Citrus Sinensis ID: 011014

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
Protein Sequence
MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHccccccccccccccEEEEcccccEEEEEcccEEEEccccEEEEEcccEEEEEcccEEcccccccccccccEEEEEcccccEEEEEccccEEEEEEcccccccccccccccccEEcccccEEEEcccccEEEEEccccEEEEEccccEEEEEEEccccccccccccccccccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEcccccccccEEEEEEcccEEEEEEEEEccEEEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccEEEccccEEEccccccccccccEEEccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEcccccccccccEEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccccccccHHHHcHHHHHHHHHHHHHHHHcccccccEcccccEEEEcccEEEEEEEccccccccccEEEEcccccEEEEEcccccEEEEEEEccccccccccccccHcEcccccEEEEcccccEEEEEccccEEEEEccccEEEEEEcccccccccccccHHHHcccccccEEEEcccccEEEEEccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccccEEccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVRNLVVFLLILVFFFggfssvsastppakIVAGIVSNVVSALVKWLWslkdspktavssssmikfeggyTVETVfegskfgmepfsvavspsgellvldsennsrpklvagspegyyghvdgrprgarmnhpkglavddrgniyiADTMNMAIRKISdtgvttiaggkwsrgvghvdgpsedakfsndfDVVYVGSSCSLLVIDRGNQAIREIQlhdddcsdnyddtfHLGIFVLVAAAFFGYMLALLQRRVQAMfsskddprtqmkrgppavapyqrppksarpplvpteddfekpeegffgsigrlvlntgstvgeiFGGLFsmfrrkpvhyqrqhqyqqrnvppstwhmqesyvipdedepppletrtptpkksyhpytikdldkrqytkqsksyyngwevdyhhgqqqqmpihhqqqqhhhrqfsphpqtyyekscetnEIVFGAvqeqdgrrEAVVIKAvdygdprynhhnirprlnymgysnsysqvy
Flexible Loop (DISEMBL)
MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSlkdspktavssssmikfeGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSrpklvagspegyyGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFsskddprtqmkrgppavapyqrppksarppLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHqyqqrnvppstWHMQESyvipdedepppletrtptpkksyhpytikdldkrqyTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGavqeqdgrrEAVVIkavdygdprynhhnirprlnymgysnsysqvy
Low Complexity Region (SEG)
MVRNlvvfllilvfffggfssvsasTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVhyqrqhqyqqrNVPPSTWHMQESYVIpdedepppletrtptpKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYhhgqqqqmpihhqqqqhhhrqfsphpqTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Disordered region (IsUnstruct)
***NLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKD*********SMIKFEGGYTVETVFEGSKFGMEPFSVAV*********************************************LAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQA*********************************************GFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQR***********************************************************KSYYNGWEVDYH***************************YYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGY********
Disordered Region (DISOPRED)
***NLVV*LLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDP***************************************FGSIGRLVLNTGSTVGEIFGGLFSMFRR********************WH**ESY****************************************************************************************IVFGA**************AVDYGDPRYNHHNIRPRLNYMGYS**Y****
Disordered Region (DISEMBL)
MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLK********SSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMF*****************APYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPV***********NVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHG************************TYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Disordered Region (DISPRO)
*VRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK***********************ARPPLV*****FEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSYSQVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
255552640	494	conserved hypothetical protein [Ricinus	0.965	0.967	0.708	0.0
449492692	516	PREDICTED: uncharacterized protein LOC10	0.985	0.945	0.655	0.0
296087695	811	unnamed protein product [Vitis vinifera]	0.985	0.601	0.696	0.0
225452518	677	PREDICTED: uncharacterized protein LOC10	0.971	0.710	0.692	1e-179
449449204	454	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.890	0.971	0.668	1e-165
147860395	527	hypothetical protein VITISV_043282 [Viti	0.931	0.874	0.635	1e-163
224102017	494	predicted protein [Populus trichocarpa]	0.959	0.961	0.615	1e-163
255560011	500	conserved hypothetical protein [Ricinus	0.911	0.902	0.630	1e-161
224140207	453	predicted protein [Populus trichocarpa]	0.864	0.944	0.665	1e-160
356573394	528	PREDICTED: uncharacterized protein LOC10	0.977	0.916	0.607	1e-159

>gi|255552640|ref|XP_002517363.1| conserved hypothetical protein [Ricinus communis] gi|223543374|gb|EEF44905.1| conserved hypothetical protein [Ricinus communis]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/507 (70%), Positives = 403/507 (79%), Gaps = 29/507 (5%)

Query: 1   MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSS 60
           M +N VVF    +    G SSVSA TPP KIV+G+VSNVVSALVKWLWSLK + KTA SS
Sbjct: 1   MCKNWVVFAFTFLVLLSGLSSVSA-TPPVKIVSGVVSNVVSALVKWLWSLKSNTKTAASS 59

Query: 61  SSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENN------------SRPK 108
            SM+KFEGGYTVETVF+GSK G+EP +V VSPSGELLVLDSEN+            SRPK
Sbjct: 60  RSMMKFEGGYTVETVFDGSKLGIEPHTVDVSPSGELLVLDSENSNIYKISTPLSRYSRPK 119

Query: 109 LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGG 168
           L+AGSPEGY GHVDGR R ARMNHPKGL VD+RGNIYIADTMNMAIRKISD GVTTIAGG
Sbjct: 120 LIAGSPEGYSGHVDGRLREARMNHPKGLTVDNRGNIYIADTMNMAIRKISDGGVTTIAGG 179

Query: 169 KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDT 228
           KW+R  GHVDGPSEDAKFSNDFD+ Y+GSSCSLLVIDRGNQAIREIQL+DDDC++ YD T
Sbjct: 180 KWTRAGGHVDGPSEDAKFSNDFDIAYIGSSCSLLVIDRGNQAIREIQLNDDDCNNQYDGT 239

Query: 229 FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPL 288
           FHLGI VLVAAAFFGYMLALLQ RVQ +FS ++DPRT MK G P +APYQRPPK  RPPL
Sbjct: 240 FHLGIAVLVAAAFFGYMLALLQWRVQTLFSPRNDPRTYMKNGTP-MAPYQRPPKPVRPPL 298

Query: 289 VPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPP 348
           VP++D+ +KP+EGFFGS+G+LVL          GGLFS FRRKP+HYQ Q QYQQ+    
Sbjct: 299 VPSDDEPDKPDEGFFGSLGKLVL----------GGLFSGFRRKPLHYQFQQQYQQQLKHS 348

Query: 349 STWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDY- 407
           + W MQES+VIPDEDEPP LETRTPT KK+Y P     ++K    KQS  YYNGW+ DY 
Sbjct: 349 NPWPMQESFVIPDEDEPPSLETRTPTSKKAY-PSMTNGVEKHYQFKQSSGYYNGWDGDYH 407

Query: 408 ---HHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDGRREAVVIK 464
                  Q QM  H +QQQHHHR ++ +P+TYYEKSCETNEIVFGAVQEQDGRREAVVIK
Sbjct: 408 QQQQMQMQVQMQQHQKQQQHHHRHYTSNPKTYYEKSCETNEIVFGAVQEQDGRREAVVIK 467

Query: 465 AVDYGDPRYNHHNIRPRLNYMGYSNSY 491
           AVDY DPRYNHHNIRPR NY+GYS+ Y
Sbjct: 468 AVDYADPRYNHHNIRPRFNYVGYSHGY 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492692|ref|XP_004159073.1| PREDICTED: uncharacterized protein LOC101226879 [Cucumis sativus]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/519 (65%), Positives = 406/519 (78%), Gaps = 31/519 (5%)

Query: 1   MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSS 60
           M R  V F L+ +  FGG SSVSA TPPAKIV G++SNVVS+LVK LWS+K S KTAVSS
Sbjct: 1   MARIWVAFALVFLLLFGGVSSVSA-TPPAKIVRGVLSNVVSSLVKKLWSMKSSAKTAVSS 59

Query: 61  SSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENN------------SRPK 108
            SM+KFE GY+VETVF+GSK G++P+SV +SPSGELL+LD+EN+            SRPK
Sbjct: 60  RSMMKFESGYSVETVFDGSKLGIDPYSVEMSPSGELLILDAENSNIHKISMPLSRFSRPK 119

Query: 109 LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGG 168
           LV+GS EGY GHVDG  R ARMNHPKGL +D+RGNIYIADTMNMAIRKISDTGVTTIAGG
Sbjct: 120 LVSGSAEGYSGHVDGHSREARMNHPKGLTLDERGNIYIADTMNMAIRKISDTGVTTIAGG 179

Query: 169 KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDT 228
           +W++G GH+DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN+AIREI+L+ DDC+  Y D+
Sbjct: 180 RWNQGSGHIDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIELNYDDCNTQYADS 239

Query: 229 FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRT---QMKRGPPAVAPYQRPP-KSA 284
            +LG+ +LVAA  FGY+LALLQRRVQAMFSS+ D      QM +  P VAPYQRPP KS 
Sbjct: 240 LNLGVVLLVAAGLFGYLLALLQRRVQAMFSSQKDQEIRSQQMMKATP-VAPYQRPPLKSV 298

Query: 285 RPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQR 344
           RP L+P+ED+ EK EEGFFGS+GRL +N+GS++ +IFGGL S FRRKP+++Q   Q+Q  
Sbjct: 299 RPSLIPSEDEPEKLEEGFFGSLGRLFVNSGSSMADIFGGLLSGFRRKPLNHQIHQQFQPV 358

Query: 345 NVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWE 404
           N  P+ W +QES+VIPDEDEPP +ET+TPT KK+Y P+  +DLD+    K ++SY++GW+
Sbjct: 359 NRHPNAWPLQESFVIPDEDEPPSIETKTPTIKKTY-PFMTQDLDRSHQFKPNRSYFSGWD 417

Query: 405 VDY------------HHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQ 452
            ++            H  Q  Q   H QQQQ+HHRQ+S  P TYYEKSCETNEIVFGAVQ
Sbjct: 418 GEFHQQQQQQQIQHHHQQQHIQHHHHQQQQQYHHRQYSAGPTTYYEKSCETNEIVFGAVQ 477

Query: 453 EQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 491
           EQDGRREA+VIKAVDYGDPRYNHHNIR R NY G  NSY
Sbjct: 478 EQDGRREAMVIKAVDYGDPRYNHHNIRARYNYTGNPNSY 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087695|emb|CBI34951.3| unnamed protein product [Vitis vinifera]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/507 (69%), Positives = 408/507 (80%), Gaps = 19/507 (3%)

Query: 2   VRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSS 61
           +RN  V L +++  FGGFSSVSAS P AKIV+GIVSNVVSALVKWLWSLK +  TA+SS 
Sbjct: 1   MRNNWVGLFLILVVFGGFSSVSASPPVAKIVSGIVSNVVSALVKWLWSLKSTTNTAISSR 60

Query: 62  SMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENN------------SRPKL 109
           S + FE GYTVETVF+GSK G+EP+S+ VS SGELLVLDSEN+            SRPKL
Sbjct: 61  SKMNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPKL 120

Query: 110 VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGK 169
           VAGSP+GY GHVDG+ R ARMNHPKGL +D+RGNIYIADTMNMAIRKISD GVTTIAGGK
Sbjct: 121 VAGSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGGK 180

Query: 170 WSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTF 229
           W RG GHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGNQAIREIQLH +DC+  Y+ +F
Sbjct: 181 WGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSF 240

Query: 230 HLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLV 289
           HLGI VLVAA FFGYMLALLQRRV AMFSS+ D  T MK+G P  + YQRP KS R PL+
Sbjct: 241 HLGIAVLVAAGFFGYMLALLQRRVAAMFSSQYDSSTPMKKGMPPES-YQRPLKSVRAPLI 299

Query: 290 PTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPS 349
           PTED++EK +EGFFGS+GRL LNTGST+ EIFGGLFS  R+KP H Q Q QY Q NV  +
Sbjct: 300 PTEDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNVHSN 359

Query: 350 TWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYY-NGWEVDYH 408
            W MQESYVIPDEDEPP +E+R PTPKK+Y P+   +++K  + +QS+++Y NGW+ +Y 
Sbjct: 360 GWPMQESYVIPDEDEPPSIESRAPTPKKTY-PFMTPEMEKTHHFRQSRTFYSNGWDGNYQ 418

Query: 409 HGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCET-NEIVFGAVQEQDGRREAVVIKAVD 467
             QQ+Q+    Q QQHH + +S +PQTYYE+SCET NEIVFGAVQEQDGRREA+VIKAVD
Sbjct: 419 QLQQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKAVD 478

Query: 468 YGDPRYNHHNIRPRLNYMGYSNSYSQV 494
           YGDP YNHHNIRPRLNYM    SYS +
Sbjct: 479 YGDPVYNHHNIRPRLNYMA---SYSHI 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452518|ref|XP_002274991.1| PREDICTED: uncharacterized protein LOC100266244 [Vitis vinifera]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 349/504 (69%), Positives = 403/504 (79%), Gaps = 23/504 (4%)

Query: 2   VRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSS 61
           +RN  V L +++  FGGFSSVSAS P AKIV+GIVSNVVSALVKWLWSLK +  TA+SS 
Sbjct: 1   MRNNWVGLFLILVVFGGFSSVSASPPVAKIVSGIVSNVVSALVKWLWSLKSTTNTAISSR 60

Query: 62  SMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENN------------SRPKL 109
           S + FE GYTVETVF+GSK G+EP+S+ VS SGELLVLDSEN+            SRPKL
Sbjct: 61  SKMNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPKL 120

Query: 110 VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGK 169
           VAGSP+GY GHVDG+ R ARMNHPKGL +D+RGNIYIADTMNMAIRKISD GVTTIAGGK
Sbjct: 121 VAGSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGGK 180

Query: 170 WSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTF 229
           W RG GHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGNQAIREIQLH +DC+  Y+ +F
Sbjct: 181 WGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSF 240

Query: 230 HLGIFVLVAAAFFGYMLALLQRRVQAMFSSK--DDPRTQMKRGPPAVAPYQRPPKSARPP 287
           HLGI VLVAA FFGYMLALLQRRV AMFSS+   DP          +  YQRP KS R P
Sbjct: 241 HLGIAVLVAAGFFGYMLALLQRRVAAMFSSQYVSDPAFF------TLQSYQRPLKSVRAP 294

Query: 288 LVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVP 347
           L+PTED++EK +EGFFGS+GRL LNTGST+ EIFGGLFS  R+KP H Q Q QY Q NV 
Sbjct: 295 LIPTEDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNVH 354

Query: 348 PSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYY-NGWEVD 406
            + W MQESYVIPDEDEPP +E+R PTPKK+Y P+   +++K  + +QS+++Y NGW+ +
Sbjct: 355 SNGWPMQESYVIPDEDEPPSIESRAPTPKKTY-PFMTPEMEKTHHFRQSRTFYSNGWDGN 413

Query: 407 YHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCET-NEIVFGAVQEQDGRREAVVIKA 465
           Y   QQ+Q+    Q QQHH + +S +PQTYYE+SCET NEIVFGAVQEQDGRREA+VIKA
Sbjct: 414 YQQLQQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKA 473

Query: 466 VDYGDPRYNHHNIRPRLNYMGYSN 489
           VDYGDP YNHHNIRPRLNYMGYS+
Sbjct: 474 VDYGDPVYNHHNIRPRLNYMGYSH 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449204|ref|XP_004142355.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209861 [Cucumis sativus]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 304/455 (66%), Positives = 361/455 (79%), Gaps = 14/455 (3%)

Query: 50  LKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENN----- 104
           +K S KTAVSS SM+KFE GY+VETVF+GSK G++P+SV +SPSGELL+LD+EN+     
Sbjct: 1   MKSSAKTAVSSRSMMKFESGYSVETVFDGSKLGIDPYSVEMSPSGELLILDAENSNIHKI 60

Query: 105 -------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI 157
                  SRPKLV+GS EGY GHVDG  R ARMNHPKGL +D+RGNIYIADTMNMAIRKI
Sbjct: 61  SMPLSRFSRPKLVSGSAEGYSGHVDGHSREARMNHPKGLTLDERGNIYIADTMNMAIRKI 120

Query: 158 SDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH 217
           SDTGVTTIAGG+W++G GH+DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN+AIREI+L+
Sbjct: 121 SDTGVTTIAGGRWNQGSGHIDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIELN 180

Query: 218 DDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPY 277
            DDC+  Y D+ +LG+ +LVAA  FGY+LALLQRRVQAMFSS+ + R+Q       VAPY
Sbjct: 181 YDDCNTQYADSLNLGVVLLVAAGLFGYLLALLQRRVQAMFSSQKEIRSQQMMKATPVAPY 240

Query: 278 QRPP-KSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQ 336
           QRPP KS RP L+P+ED+ EK EEGFFGS+GRL +N+GS++ +IFGGL S FRRKP+++Q
Sbjct: 241 QRPPLKSVRPSLIPSEDEPEKLEEGFFGSLGRLFVNSGSSMADIFGGLLSGFRRKPLNHQ 300

Query: 337 RQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQS 396
              Q+Q  N  P+ W +QES+VIPDEDEPP +ET+TPT KK+Y P+  +DLD+    K +
Sbjct: 301 IHQQFQPVNRHPNAWPLQESFVIPDEDEPPSIETKTPTIKKTY-PFMTQDLDRSHQFKPN 359

Query: 397 KSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCETNEIVFGAVQEQDG 456
            S  N     +H  Q  Q   H QQQQ+HHRQ+S  P TYYEKSCETNEIVFGAVQEQDG
Sbjct: 360 NSNNNSXIQHHHQQQHIQHHHHQQQQQYHHRQYSAGPTTYYEKSCETNEIVFGAVQEQDG 419

Query: 457 RREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 491
           RREA+VIKAVDYGDPRYNHHNIR R NY G  NSY
Sbjct: 420 RREAMVIKAVDYGDPRYNHHNIRARYNYTGNPNSY 454

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860395|emb|CAN80443.1| hypothetical protein VITISV_043282 [Vitis vinifera]

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 330/519 (63%), Positives = 385/519 (74%), Gaps = 58/519 (11%)

Query: 29  AKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSV 88
            +IV+GIVSNVVSALVKWLWSLK +  TA+SS S + FE GYTVETVF+GSK G+EP+S+
Sbjct: 11  GEIVSGIVSNVVSALVKWLWSLKSTTNTAISSXSKMNFEDGYTVETVFDGSKLGIEPYSL 70

Query: 89  AVSPSGELLVLDSENN------------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 136
            VS SGELLVLDSEN+            SRPKLVAGSP+GY GHVDG+ R ARMNHPKGL
Sbjct: 71  EVSTSGELLVLDSENSNIYKISSPLSRYSRPKLVAGSPDGYSGHVDGKLREARMNHPKGL 130

Query: 137 AVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG 196
            +D+RGNIYIADTMNMAIRKISD GVTTIAGGKW RG GHVDGPSEDAKFSNDFDVVY+G
Sbjct: 131 TMDERGNIYIADTMNMAIRKISDAGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG 190

Query: 197 SSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHL------------------------- 231
           SSCSLLVIDRGNQAIREIQLH +DC+  Y+ +FHL                         
Sbjct: 191 SSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSFHLGKLRLANFVIAITXPWLWRFMRRFS 250

Query: 232 -----GIFVLVAAAFFGYMLA-------LLQRRVQAMFSS-----KDDPRTQMKRGPPAV 274
                GI VLVAA FFGYMLA       LL    Q+ F++       D  T MK+G P  
Sbjct: 251 LIAVAGIAVLVAAGFFGYMLAYAACTLFLLMETCQSSFANSFHDKSSDSSTPMKKGMPPE 310

Query: 275 APYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVH 334
           + YQRP KS R PL+PTED++EK +EGFFGS+GRL LNTGST+ EIFGGLFS  R+KP H
Sbjct: 311 S-YQRPLKSVRAPLIPTEDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPH 369

Query: 335 YQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTK 394
            Q Q QY Q NV  + W MQESYVIPDEDEPP +E+R PTPKK+Y P+   +++K  + +
Sbjct: 370 QQIQQQYGQPNVHSNGWPMQESYVIPDEDEPPSIESRAPTPKKTY-PFMTPEMEKXHHFR 428

Query: 395 QSKSYY-NGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCET-NEIVFGAVQ 452
           QS+++Y NGW+ +Y   QQ+Q+    Q QQHH + +S +PQTYYE+SCET NEIVFGAVQ
Sbjct: 429 QSRTFYSNGWDGNYQQLQQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQ 488

Query: 453 EQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 491
           EQDGRREA+VIKAVDYGDP YNHHNIRPRLNYMGYS++Y
Sbjct: 489 EQDGRREAMVIKAVDYGDPVYNHHNIRPRLNYMGYSHAY 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102017|ref|XP_002312513.1| predicted protein [Populus trichocarpa] gi|222852333|gb|EEE89880.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 312/507 (61%), Positives = 373/507 (73%), Gaps = 32/507 (6%)

Query: 1   MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSS 60
           M +N++V   I++ FFGG +SV  +T PAKIV G+ SNVVSAL+KWLWSLK + KT +S 
Sbjct: 4   MGKNVLVLCFIMLLFFGGVTSVPTTTSPAKIVGGLFSNVVSALMKWLWSLKATTKTVISG 63

Query: 61  SSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENN------------SRPK 108
             M+KFE GYTVETVF+GSK G+EP+SV V PSGELL+LDS N+            SRPK
Sbjct: 64  RPMMKFESGYTVETVFDGSKLGIEPYSVQVLPSGELLILDSANSNIYRISASLSLYSRPK 123

Query: 109 LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGG 168
           LVAGS EGY GHVDG+ R A+MNHPKGL VDDRGNIY+ADTMNMAIRKISD GVTTIAGG
Sbjct: 124 LVAGSHEGYSGHVDGKLREAKMNHPKGLTVDDRGNIYVADTMNMAIRKISDAGVTTIAGG 183

Query: 169 KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDT 228
           KW RG  HVDG SEDA FSNDFDVVY+GSSCSLLVIDRGN+AIREIQLH DDC+  Y   
Sbjct: 184 KWGRG-SHVDGASEDANFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSG 242

Query: 229 FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPL 288
           F LGI VLVAA FFGYMLALLQRRV  + S ++     MK     + PYQ+P KS RPPL
Sbjct: 243 FPLGIAVLVAAGFFGYMLALLQRRVGMIVSPQN---VSMKMSTTGI-PYQKPIKSIRPPL 298

Query: 289 VPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPP 348
           +PTED+ EK EEG FGS+G+L +NTG++V EIFGG+   FR+KPV YQ Q+  QQ+    
Sbjct: 299 IPTEDEQEKHEEGLFGSLGKLFINTGASVMEIFGGIVPSFRKKPVSYQYQNYQQQQYQHQ 358

Query: 349 ---STWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQYTKQSKSYYNGWEV 405
              S+W +Q+S+VIPDEDEPP +E+RTPTP+K+Y P+  KD +K    +Q +S Y+GW+ 
Sbjct: 359 KQLSSWPVQDSFVIPDEDEPPSIESRTPTPRKTY-PFMSKDTEKMHQWRQGRSIYSGWDG 417

Query: 406 DYHHGQQQQMPIHHQQQQHHHRQFSPHPQTYYEKSCE-TNEIVFGAVQEQDGRREAVVIK 464
           D          +  QQ QHHHR  S  P TYYE+S E TNEIVFGAVQEQDG+ E +V K
Sbjct: 418 D----------LQQQQHQHHHRYQSSTPHTYYEQSYEKTNEIVFGAVQEQDGKYETMVTK 467

Query: 465 AVDYGDPRYNHHNIRPRLNYMGYSNSY 491
            VDYGDP++ HHNIR R N + Y+  Y
Sbjct: 468 PVDYGDPKHYHHNIRSRTNSLHYAKGY 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560011|ref|XP_002521024.1| conserved hypothetical protein [Ricinus communis] gi|223539861|gb|EEF41441.1| conserved hypothetical protein [Ricinus communis]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/476 (63%), Positives = 357/476 (75%), Gaps = 25/476 (5%)

Query: 29  AKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSV 88
           AKIV+G  SN +S  +KWLWSLK + KTA+S   M+KFEGGY VETVF+GSK G+EP+SV
Sbjct: 37  AKIVSGFFSNALSVFMKWLWSLKATSKTAISGRPMMKFEGGYNVETVFDGSKLGIEPYSV 96

Query: 89  AVSPSGELLVLDSENN------------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 136
            V P+GELL+LDS N+            SRPKLVAGSP+GY GHVDG+ R ARMNHPKGL
Sbjct: 97  EVLPNGELLILDSANSNIYRISSSLSLYSRPKLVAGSPDGYSGHVDGKHREARMNHPKGL 156

Query: 137 AVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG 196
            VDDRGNIYIAD MNMAIRKISD GVTTIAGGKW RG  HVDG SEDAKFSNDFDVVY+G
Sbjct: 157 TVDDRGNIYIADAMNMAIRKISDAGVTTIAGGKWGRGGSHVDGASEDAKFSNDFDVVYIG 216

Query: 197 SSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAM 256
           SSCSLLVIDRGN+AIREIQLH DDC+  Y+  F LG+ VLVAA FFGYMLALLQRRV  +
Sbjct: 217 SSCSLLVIDRGNRAIREIQLHFDDCAYQYESGFPLGVAVLVAAGFFGYMLALLQRRVGKI 276

Query: 257 FSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGST 316
            SS++D R  MK      +PYQ+P +S RPPL+PTED+ EK EEGFFGS+G+L  N G+ 
Sbjct: 277 VSSQND-RDAMKTSISG-SPYQKPLRSVRPPLIPTEDEQEKHEEGFFGSLGKLFANAGAC 334

Query: 317 VGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPK 376
           V EI GG+   FR+KP++YQ   Q Q+ +   STW +Q+S+VIPDEDEPP +ETRTPTPK
Sbjct: 335 VVEILGGIVPGFRKKPLNYQYLSQQQKHS---STWPVQDSFVIPDEDEPPSIETRTPTPK 391

Query: 377 KSYHPYTIKDLDKRQYTKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFSPHPQTY 436
           K+Y P+  KD +K    +Q +++Y+GW+ D+   QQQQ   HH + Q      S  P TY
Sbjct: 392 KTY-PFMSKDAEKMHQWRQGRAFYSGWDDDFQQQQQQQKHQHHHRYQ------SAIPHTY 444

Query: 437 YEKSCE-TNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 491
           YE+S E TNEIVFGAVQEQDG+REA V+K VDYGD  YN  +IR R + MGYSN +
Sbjct: 445 YEQSYEKTNEIVFGAVQEQDGKREAAVVKPVDYGDSVYNQQSIRFRTSSMGYSNGF 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140207|ref|XP_002323476.1| predicted protein [Populus trichocarpa] gi|222868106|gb|EEF05237.1| predicted protein [Populus trichocarpa]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 307/461 (66%), Positives = 358/461 (77%), Gaps = 33/461 (7%)

Query: 56  TAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNS---------- 105
           +AVSS SM+KFEGGYTVETVF+GSK G+EP+SV VSPSGELL+LDSEN++          
Sbjct: 1   SAVSSPSMMKFEGGYTVETVFDGSKLGIEPYSVEVSPSGELLLLDSENSNIYKISTQFSK 60

Query: 106 --RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTGV 162
             RPKL+ GS EGY GHVDG+ R ARMNHPKGL VD+ GNIY+ADTMNMAIRKIS D GV
Sbjct: 61  YGRPKLITGSFEGYPGHVDGKLRDARMNHPKGLTVDEGGNIYVADTMNMAIRKISTDGGV 120

Query: 163 TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 222
           TTIAGGKW+RG GHVDGPSEDAKFSNDFDVVY  SSCSLL+IDRG+QAIREIQLHDDDC+
Sbjct: 121 TTIAGGKWARGGGHVDGPSEDAKFSNDFDVVYSASSCSLLIIDRGSQAIREIQLHDDDCN 180

Query: 223 DNYDDTFHL----------GIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPP 272
             +DD FHL          G+ VLVAA FFGYMLALLQRRVQ +FSS         +GPP
Sbjct: 181 YPHDDCFHLDLDNILINIAGLAVLVAAGFFGYMLALLQRRVQILFSST------RGKGPP 234

Query: 273 AVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKP 332
             APYQ PP S RPP +P ED+  K +EG FGS+GRL+LNT STVGEIFGG+FS FRRKP
Sbjct: 235 K-APYQSPPMSVRPPFIPDEDEPVKSDEGLFGSLGRLILNTSSTVGEIFGGIFSGFRRKP 293

Query: 333 VHYQRQHQYQQRNVPPSTWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTIKDLDKRQY 392
           +HYQ Q  YQQ     +TW +Q+S+VIPDEDEPP +ETR+PT +K+Y P+  KD+++  +
Sbjct: 294 IHYQFQQHYQQPLKHSNTWPVQDSFVIPDEDEPPSIETRSPTSQKTY-PFMTKDVEQNHH 352

Query: 393 TKQSKSYYNGWEVDYHHGQQQQMPIHHQQQQHHHRQFS--PHPQTYYEKSCETNEIVFGA 450
            +Q++ YY+ W   YH  QQQQM +   +QQ         P+P+TYYEKSCETNEIVFGA
Sbjct: 353 LEQNQGYYSNWGGGYHQQQQQQMHLQRYKQQQQQHHRHYMPNPKTYYEKSCETNEIVFGA 412

Query: 451 VQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 491
           VQEQ+GRREAVVIKAVDYGDPRYNHHNIRPR NY+GYS+SY
Sbjct: 413 VQEQNGRREAVVIKAVDYGDPRYNHHNIRPRFNYVGYSDSY 453

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573394|ref|XP_003554846.1| PREDICTED: uncharacterized protein LOC100793916 [Glycine max]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 325/535 (60%), Positives = 377/535 (70%), Gaps = 51/535 (9%)

Query: 1   MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLK----DSPKT 56
           M ++  V L   V     FS  SA+ PPAK+V G+VSNVVSAL+KWLWSL       P  
Sbjct: 1   MSKSCSVLLFGFVLVLCLFSPTSATPPPAKVVTGVVSNVVSALIKWLWSLSVKSTTKPGR 60

Query: 57  AVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENN------------ 104
              S SM+KFE GY+VET+F+GS+ G+EP SV +SP+GE LVLDSEN+            
Sbjct: 61  VQHSRSMVKFESGYSVETIFDGSQLGIEPHSVKISPNGEFLVLDSENSNIYKVSGSMSRY 120

Query: 105 SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTT 164
           SRPKL+AGS EG  GH+DGRPR ARMNHPKGL VDDRGNIYIADT+NMAIRKISD GVTT
Sbjct: 121 SRPKLLAGSAEGNIGHIDGRPREARMNHPKGLTVDDRGNIYIADTLNMAIRKISDEGVTT 180

Query: 165 IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS-- 222
           IAGGK     GHVDGPSEDAKFSNDFDVVYVGSSCSLLV+DRGN AIREIQLH DDC+  
Sbjct: 181 IAGGKRGYAGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVVDRGNHAIREIQLHQDDCTSY 240

Query: 223 DNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPP- 281
           D  D++F+LGI VLVAAAFFGYMLALLQ RV+AMFSS D       R P      QRPP 
Sbjct: 241 DEDDNSFNLGIVVLVAAAFFGYMLALLQWRVRAMFSSPD------VRAPFVAQQMQRPPP 294

Query: 282 --KSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQH 339
             KS RPPL+P ED+FEK +EGFF S+GRL LN+G+ + EI GGLFS  +RK + Y +  
Sbjct: 295 TTKSVRPPLIPNEDEFEKQDEGFFVSLGRLFLNSGTCMSEILGGLFSGSKRKSLQYHQYQ 354

Query: 340 QYQQR-NVPPSTWHMQESYVIPDEDEPPP-LETRTPTPKKSYHPYTIKDLDKRQYTKQSK 397
           Q  Q  N  P+ W MQES+VIPDEDEPPP LET+TPTP+++Y P   K+L+K Q+ K S+
Sbjct: 355 QQYQYANRYPNAWPMQESFVIPDEDEPPPSLETKTPTPRETY-PIMTKELEKPQHFKPSR 413

Query: 398 SYYNGWE-VDYHHGQQQQMPIHHQQQQHH--------------------HRQFSPHPQTY 436
            Y   WE  DY    QQ    H Q QQ H                    H ++S  PQ Y
Sbjct: 414 GYLKRWEGGDYQEQHQQLQQHHQQHQQEHPKLQHQQHQQQVKLQHQHQVHTRYSSTPQGY 473

Query: 437 YEKSCETNEIVFGAVQEQDGRREAVVIKAVDYGDPRYNHHNIRPRLNYMGYSNSY 491
           YE++CETNEIVFGAVQE DGRREA+VIKAVDYGDP+Y HHNIRPRLNY+GYS+ Y
Sbjct: 474 YEQNCETNEIVFGAVQEHDGRREAMVIKAVDYGDPKYTHHNIRPRLNYVGYSHGY 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
TAIR|locus:2016189	509	AT1G70280 "AT1G70280" [Arabido	0.923	0.897	0.492	1.2e-106
TAIR|locus:2199862	545	AT1G23880 "AT1G23880" [Arabido	0.844	0.766	0.513	1e-100
TAIR|locus:2147780	754	AT5G14890 [Arabidopsis thalian	0.666	0.437	0.490	1.4e-97
TAIR|locus:2099357	493	AT3G14860 "AT3G14860" [Arabido	0.494	0.496	0.456	1.1e-53
TAIR|locus:2199872	400	AT1G23890 "AT1G23890" [Arabido	0.383	0.475	0.412	1.5e-33
UNIPROTKB|Q747P0	365	GSU3225 "NHL repeat domain lip	0.242	0.328	0.338	7.8e-06
TIGR_CMR|GSU_3225	365	GSU_3225 "NHL repeat domain pr	0.242	0.328	0.338	7.8e-06
TAIR|locus:2010728	1055	AT1G56500 [Arabidopsis thalian	0.349	0.163	0.270	0.00098

TAIR|locus:2016189 AT1G70280 "AT1G70280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 241/489 (49%), Positives = 301/489 (61%)

Query:    28 PAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFS 87
             PAKI+ G +SN  S+L+KWLWSLK + KT +++ SM+KFE GY+VETVF+GSK G+EP+S
Sbjct:    28 PAKILNGFISNHGSSLMKWLWSLKTTTKTTIATRSMVKFENGYSVETVFDGSKLGIEPYS 87

Query:    88 VAVSPSGELLVLDSENN------------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKG 135
             + V P+GELL+LDSEN+            SRP+LV GSPEGY GHVDGR R A++NHPKG
Sbjct:    88 IEVLPNGELLILDSENSNIYKISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDAKLNHPKG 147

Query:   136 LAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV 195
             L VDDRGNIY+ADT+N AIRKIS+ GVTTIAGGK  R  GHVDGPSEDAKFSNDFDVVYV
Sbjct:   148 LTVDDRGNIYVADTVNNAIRKISEGGVTTIAGGKTVRNGGHVDGPSEDAKFSNDFDVVYV 207

Query:   196 GSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQA 255
             GSSCSLLVIDRGN+AIREIQLH DDC+  Y   F LGI VLVAA FFGYMLALLQRRV +
Sbjct:   208 GSSCSLLVIDRGNKAIREIQLHFDDCAYQYGSGFPLGIAVLVAAGFFGYMLALLQRRVGS 267

Query:   256 MFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDD-FEKPEEGFFGSIGRLVLNTG 314
             + SS +D   +M    P     Q+P K +RP L+P  D+  EK EE F  S+G+LV N  
Sbjct:   268 IVSSHNDQ--EMFEADPD----QKPMKHSRPSLIPAGDEQLEKQEETFVVSLGKLVSNAW 321

Query:   315 STVGEIFGGLFSMFRRKPVXXXXXXXXXXXNVPPSTWHMQESYVIXXXXXXXXXXXXXXX 374
              +V EI     +    +                P  W +QES+VI               
Sbjct:   322 ESVMEILRKKQTGTSFQQYHGTTKQSAAFSTSTP--WPIQESFVIRDEDGPPPVEPRNPT 379

Query:   375 XKKSYHPYTIKDLDKRQYTKQSKSYYNGWEVDY------XXXXXXXXXXXXXXXXXXXXX 428
              +K+Y  +  KD +K Q  +QS+++Y+ W+ ++                           
Sbjct:   380 PRKTY-AFMSKDAEKMQQLRQSRAFYSSWDAEFPNQQQQQQKQHQKHQHQQQQQQQHRRH 438

Query:   429 XXXXXXTYYEKSCE-TNEIVFGAVQEQDGRREAVVI-KAVDYGDPRYNHHNIRPRLNYMG 486
                   TYYE+  E +NEIVFGAVQEQ  +R A    K ++ GD   N  N +  L+Y  
Sbjct:   439 YSSIPHTYYEQDSEKSNEIVFGAVQEQSSKRVAKPKPKPIESGDQMNN--NTQQNLHYRS 496

Query:   487 YSNSYSQVY 495
             +S SY   Y
Sbjct:   497 HSVSYPYGY 505

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2199862 AT1G23880 "AT1G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 230/448 (51%), Positives = 277/448 (61%)

Query:    26 TPPAKIVAGIVSNVVSALVKWLWSL--KDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGM 83
             T PAKIV   +SN  ++L+KWLWSL  K + KTAV + SM+KFE GY+VETV +GSK G+
Sbjct:    86 TSPAKIVNSFISNHGTSLLKWLWSLSFKTTTKTAVPTKSMVKFENGYSVETVLDGSKLGI 145

Query:    84 EPFSVAVSPSGELLVLDSENN------------SRPKLVAGSPEGYYGHVDGRPRGARMN 131
             EP+S+ V  +GELL+LDS+N+            SRP+LV GSPEGY GHVDGR R AR+N
Sbjct:   146 EPYSIQVLSNGELLILDSQNSNIYQISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDARLN 205

Query:   132 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFD 191
             +PKGL VDDRGNIY+ADT+N AIRKIS+ GVTTIAGGK  RG GHVDGPSEDAKFSNDFD
Sbjct:   206 NPKGLTVDDRGNIYVADTVNNAIRKISEAGVTTIAGGKMVRGGGHVDGPSEDAKFSNDFD 265

Query:   192 VVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQR 251
             VVY+GSSCSLLVIDRGNQAIREIQLH DDC+D Y   F LGI VLVAA FFGYMLALLQR
Sbjct:   266 VVYLGSSCSLLVIDRGNQAIREIQLHFDDCADQYGSGFPLGIAVLVAAVFFGYMLALLQR 325

Query:   252 RVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVL 311
             R+ ++ S   D          AV P Q P K  RPPL+ T D+ EK EE F G++   + 
Sbjct:   326 RLSSIVSYHTDQEVF-----EAV-PDQDPIKPVRPPLILTGDEQEKQEESFLGTLQIFIS 379

Query:   312 NTGSTVGEIFGGLFSMFRRKPVXXXXXXXXXXXNVPPST--WHMQESYVIXXXXXXXXXX 369
             N      E+F G+F   R+K             +   ST  W +QES+VI          
Sbjct:   380 NAWVFSVELFSGMFPGLRKKQTVGLNFNHQETKHSAFSTTSWPIQESFVIHNKDEPPPVE 439

Query:   370 XXXXXXKKSYHPYTIKDL-DKRQYTKQSKSYYNGWEVDYXXXXXXXXXXXXXXXXXXXXX 428
                    K Y P+  KD  +K Q  +QS++ Y   + ++                     
Sbjct:   440 SRNATPGKIY-PFMSKDATEKMQQLRQSRALYRSLDAEFLQEQQQEKHQQYHHRHHSTIP 498

Query:   429 XXXXXXTYYEKSCE-TNEIVFGAVQEQD 455
                   T YE+S E TNEIVFG  QEQD
Sbjct:   499 Y-----TLYEQSSEKTNEIVFGPGQEQD 521

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2147780 AT5G14890 [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
 Identities = 181/369 (49%), Positives = 238/369 (64%)

Query:    55 KTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSG-ELLVLDSENNS-------- 105
             K+ VSS SM+K+E GY +ETVF+GSK G+EP+++ VSP+G EL+VLDSEN++        
Sbjct:    63 KSGVSSRSMVKYESGYNMETVFDGSKLGIEPYAIEVSPNGGELIVLDSENSNIHKISMPL 122

Query:   106 ----RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 161
                 +PKL++GS EGY GHVDG+ + ARMN P+GLA+DDRGNIY+ADT+NMAIRKISD G
Sbjct:   123 SRYGKPKLLSGSQEGYTGHVDGKLKEARMNRPRGLAMDDRGNIYVADTINMAIRKISDDG 182

Query:   162 VTTIA-GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 220
             V+TIA GG+WS G        E  +FS+DFD++YV SSCSLLVIDRGNQ I+EIQLHD D
Sbjct:   183 VSTIAAGGRWSGG-----SKEESMRFSDDFDLIYVSSSCSLLVIDRGNQLIKEIQLHDHD 237

Query:   221 CSDNYDDT--FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD-DPRTQMKRGPPAV--A 275
             CS    DT   HLG  +LVAA FFGYMLALL RRV+++FSS   D +++     P++  A
Sbjct:   238 CSQPEPDTDSLHLGTALLVAAVFFGYMLALLVRRVRSLFSSSSHDTKSKRHVATPSMTMA 297

Query:   276 PYQRPPKSARPPLVPTEDDFEKPEEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPVXX 335
             PYQR P+  R PL+P + + EK EEGF GS+G+LV+ TGS+V E+  G  ++    P   
Sbjct:   298 PYQRYPRPVRQPLIPPQHESEK-EEGFLGSLGKLVVKTGSSVSEMMSGSRNVI--PP--- 351

Query:   336 XXXXXXXXXNVPPSTWHMQESYVIXXXXXXXXXXXXXXXXKKSYHPYTIKDLDKRQYTKQ 395
                         P+ W +QES+ I                     PY      + Q T Q
Sbjct:   352 --NFHQYHHQQEPNQWPVQESFAIPEEDGPPALEPRSGTNPDK--PYL-----RAQGTNQ 402

Query:   396 SKSYYNGWE 404
             ++SYY  ++
Sbjct:   403 NRSYYQDYD 411

GO:0005576 "extracellular region" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2099357 AT3G14860 "AT3G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 120/263 (45%), Positives = 164/263 (62%)

Query:    33 AGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSP 92
             +G +   +S+++KW  +   S K + S +++++FE GY VETV EG+  G+ P+ + VS 
Sbjct:    42 SGSLIKHMSSVLKW--TTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYKIRVSD 99

Query:    93 SGELLVLDSENN------------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD 140
              GEL  +D  N+            SR +LVAGS +G  GH DG+P  AR NHP+G+ +DD
Sbjct:   100 DGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFNHPRGVTMDD 159

Query:   141 RGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS 200
             +GN+Y+ADT+N+AIRKI D+GVTTIAGGK S   G+ DGPSEDAKFSNDFDVVYV  +CS
Sbjct:   160 KGNVYVADTLNLAIRKIGDSGVTTIAGGK-SNIAGYRDGPSEDAKFSNDFDVVYVRPTCS 218

Query:   201 LLVIDRGNQAIREIQLHDDDCSDNYDDTFHL-GIFVLVAAAFFGYMLALLQRRVQAMFSS 259
             LLVIDRGN A+R+I L ++DC    D +  L  I +++ A   GY   +LQ+     F S
Sbjct:   219 LLVIDRGNAALRQISLSEEDCDYQDDSSISLTDILLVIGAVLIGYATCMLQQGFGNSFFS 278

Query:   260 KDD--PRTQMKRGPPAVAPYQRP 280
             K      T  +   P      RP
Sbjct:   279 KTQVGSETSYEEEHPGKEKLSRP 301

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2199872 AT1G23890 "AT1G23890" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 85/206 (41%), Positives = 119/206 (57%)

Query:    61 SSMIKFEGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENN-----SRPKLVAG-- 112
             S  I  E GY V TV +G K G+ P+++   P S  L+VLDS  +     S P  V    
Sbjct:    20 SGKIVLEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVI 79

Query:   113 ---SPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGG 168
                + +G  GHVDG+   +R + P+G AVD +GN+Y+AD  N AIRKIS +G VTTIAGG
Sbjct:    80 NRFAGDGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVTTIAGG 139

Query:   169 KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD- 227
               S+  GH DGP+++A FS+DF++ +V   C LLV D GN+ IR+I L ++DC +N    
Sbjct:   140 I-SKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQINLKEEDCLENSHSN 198

Query:   228 --TFHLGIFVLVAAAFFGYMLALLQR 251
               T+ L    +V +   G  +    R
Sbjct:   199 LGTYSLWSIGIVLSCILGVAIGFAVR 224

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q747P0 GSU3225 "NHL repeat domain lipoprotein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 133 (51.9 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 45/133 (33%), Positives = 62/133 (46%)

Query:    73 ETVFEGSKFGMEP--FS----VAVSPSGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRP 125
             ET+  G   GMEP  F+    +AV   G LLV DS N+      A G P G +G     P
Sbjct:   215 ETLRIGGS-GMEPGAFNFPTDLAVMADGRLLVTDSLNSRIQIFTADGKPAGSFGEAGDTP 273

Query:   126 RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAK 185
                R   PKG+AVD  G+IY+ D+    ++   +TG   +A G      G    PS    
Sbjct:   274 --GRFTRPKGVAVDSEGHIYVCDSQQDMVQIFDETGRLLLAFGDKGSLPGQFWMPS-GIH 330

Query:   186 FSNDFDVVYVGSS 198
              +ND  ++YV  +
Sbjct:   331 IAND--MIYVSDT 341

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3225 GSU_3225 "NHL repeat domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 133 (51.9 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 45/133 (33%), Positives = 62/133 (46%)

Query:    73 ETVFEGSKFGMEP--FS----VAVSPSGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRP 125
             ET+  G   GMEP  F+    +AV   G LLV DS N+      A G P G +G     P
Sbjct:   215 ETLRIGGS-GMEPGAFNFPTDLAVMADGRLLVTDSLNSRIQIFTADGKPAGSFGEAGDTP 273

Query:   126 RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAK 185
                R   PKG+AVD  G+IY+ D+    ++   +TG   +A G      G    PS    
Sbjct:   274 --GRFTRPKGVAVDSEGHIYVCDSQQDMVQIFDETGRLLLAFGDKGSLPGQFWMPS-GIH 330

Query:   186 FSNDFDVVYVGSS 198
              +ND  ++YV  +
Sbjct:   331 IAND--MIYVSDT 341

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010728 AT1G56500 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00098, P = 0.00097
 Identities = 52/192 (27%), Positives = 79/192 (41%)

Query:    46 WLWSLKDSPKTAVSSSSMIKFEGGYTVETV-F---EGSKFG--MEPFSVAVSPSGELLVL 99
             W +S+ D      S +   +   G T +T  F    G   G  ++   +A S S  +  L
Sbjct:   707 WEYSVLDGITRVFSGNGYERNLNGSTPQTTSFAQPSGISLGPDLKEAYIADSESSSIRAL 766

Query:   100 DSENNSRPKLVAGSP---EGYY--GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAI 154
             D +      L  G P   E  +  G  DG      + HP G+   + G IY+ D+ N  I
Sbjct:   767 DLQTGGSRLLAGGDPYFSENLFKFGDNDGVGAEVLLQHPLGVLCANDGQIYLTDSYNHKI 826

Query:   155 RKISDTG--VTTIAG-GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 211
             +K+      V T+AG GK     G  DG  + A+ S    +  +  +  L V D  N  I
Sbjct:   827 KKLDPVTKRVVTLAGTGK----AGFKDGKVKGAQLSEPAGLA-ITENGRLFVADTNNSLI 881

Query:   212 REIQLHDDDCSD 223
             R I L+  + S+
Sbjct:   882 RYIDLNKGEDSE 893


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      495       420   0.00083  118 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  273 KB (2143 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.62u 0.08s 34.70t   Elapsed:  00:00:01
  Total cpu time:  34.62u 0.08s 34.70t   Elapsed:  00:00:01
  Start:  Tue May 21 09:48:52 2013   End:  Tue May 21 09:48:53 2013

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020773001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (542 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	495
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	5e-07
pfam01436	28	pfam01436, NHL, NHL repeat	1e-04

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 24/159 (15%)

Query: 84  EPFSVAVSPS-GELLVLDSENNS---------RPKLVAGSPEGY------YGHVDGRPRG 127
           +P  +++SP   EL + DSE++S           +L+AG    +      +G  DG    
Sbjct: 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800

Query: 128 ARMNHPKGLAVDDRGNIYIADTMNMAIRKI--SDTGVTTIAG-GKWSRGVGHVDGPSEDA 184
             + HP G+     G IY+AD+ N  I+K+  +   VTT+AG GK     G  DG +  A
Sbjct: 801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK----AGFKDGKALKA 856

Query: 185 KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 223
           + S    +  +G +  L V D  N  IR + L+  + ++
Sbjct: 857 QLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEAAE 894

Length = 1057

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 38.5 bits (91), Expect = 1e-04
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 131 NHPKGLAVDDRGNIYIADTMNMAIRKI 157
           N P G+AVD  G++Y+AD+ N  ++  
Sbjct: 2   NRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	495
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.78
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.74
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.41
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.35
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.34
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.23
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.73
COG3391	381	Uncharacterized conserved protein [Function unknow	98.69
COG3391	381	Uncharacterized conserved protein [Function unknow	98.65
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.64
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.4
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.38
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.35
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.35
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.33
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.25
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.17
PRK11028	330	6-phosphogluconolactonase; Provisional	98.14
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.13
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.08
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.06
PRK11028	330	6-phosphogluconolactonase; Provisional	98.03
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.79
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.6
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.54
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.36
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.33
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.32
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.11
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.09
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.07
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.0
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.95
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.88
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	96.84
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.77
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.74
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.67
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.46
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.05
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.97
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.77
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.7
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	95.63
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	95.32
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.11
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	94.72
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	94.53
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	94.41
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.99
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.72
KOG0318	603	consensus WD40 repeat stress protein/actin interac	93.7
KOG1215	877	consensus Low-density lipoprotein receptors contai	93.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	93.31
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	93.31
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.29
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	93.0
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.21
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.04
KOG1215	877	consensus Low-density lipoprotein receptors contai	91.83
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	91.77
COG3211	616	PhoX Predicted phosphatase [General function predi	91.14
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.54
COG3211	616	PhoX Predicted phosphatase [General function predi	90.4
KOG0266	456	consensus WD40 repeat-containing protein [General	89.92
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	89.17
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	89.13
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.99
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	88.79
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	88.59
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	88.17
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	87.82
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	87.81
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.55
PRK02888	635	nitrous-oxide reductase; Validated	86.35
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	86.24
KOG0266	456	consensus WD40 repeat-containing protein [General	86.05
KOG1274	933	consensus WD40 repeat protein [General function pr	83.84
KOG0318	603	consensus WD40 repeat stress protein/actin interac	82.22
KOG3567	501	consensus Peptidylglycine alpha-amidating monooxyg	81.52

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.78  E-value=3e-17  Score=191.51  Aligned_cols=230  Identities=15%  Similarity=0.201  Sum_probs=153.0

Q ss_pred             CCCCcceeec---eeeeeeeeccceEEEEeCCCCce--ecCCceeEe--cCCceEEEeecCCCCCCCceEEEEcC-CCcE
Q 011014           25 STPPAKIVAG---IVSNVVSALVKWLWSLKDSPKTA--VSSSSMIKF--EGGYTVETVFEGSKFGMEPFSVAVSP-SGEL   96 (495)
Q Consensus        25 ~~~P~~iv~~---~~~~ia~a~~~~I~~~d~~t~~~--vaG~~i~~~--~~G~~~~~~~~G~~~~~~P~GIAVd~-dG~L   96 (495)
                      ...|..++..   ...-+++..++.|+.++..+...  ++|.+....  .+|..     .....++.|.+|++++ +|.|
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~-----~~~~~ln~P~gVa~dp~~g~L  697 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKK-----GTSQVLNSPWDVCFEPVNEKV  697 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChh-----hhHhhcCCCeEEEEecCCCeE
Confidence            3446665543   22345666778888888766542  333322111  11100     0012357899999999 7899


Q ss_pred             EEEECCCCeeEEEEcCCC-------CccccccCC-CcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCC-C-cEEE
Q 011014           97 LVLDSENNSRPKLVAGSP-------EGYYGHVDG-RPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-G-VTTI  165 (495)
Q Consensus        97 yVaDs~n~~ii~ivaGs~-------~g~~G~~dG-~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~-G-V~ti  165 (495)
                      ||+|..++.+..+-..+.       .|.....++ ......|..|.||+++++|+ |||||+.|++|++||.+ | +.++
T Consensus       698 yVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~  777 (1057)
T PLN02919        698 YIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL  777 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence            999999985443322111       011111111 12235789999999999987 99999999999999954 3 5555


Q ss_pred             ecCccc-----CCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCC--------------
Q 011014          166 AGGKWS-----RGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYD--------------  226 (495)
Q Consensus       166 aGg~~G-----~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~--------------  226 (495)
                      +|+...     ...|..+|....+.|..|.+|+ ++.+|+|||+|.+|++|++|++++..+.+..+              
T Consensus       778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva-vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a  856 (1057)
T PLN02919        778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL-CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKA  856 (1057)
T ss_pred             EecccccCcccccccCCCCchhhhhccCCceee-EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccc
Confidence            553211     1123345666667899999999 68999999999999999999998877654211              


Q ss_pred             -CCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          227 -DTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       227 -~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                       ...|.||+++.  .+.+||+|..|++|+.+...+..
T Consensus       857 ~l~~P~GIavd~--dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        857 QLSEPAGLALGE--NGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             ccCCceEEEEeC--CCCEEEEECCCCEEEEEECCCCc
Confidence             12599999997  55799999999999877665543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.74  E-value=1.3e-16  Score=186.39  Aligned_cols=254  Identities=22%  Similarity=0.216  Sum_probs=162.3

Q ss_pred             eeeeeccceEEEEeCCCCce--ecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCc-EEEEECCCCeeEEEEcCCC
Q 011014           38 NVVSALVKWLWSLKDSPKTA--VSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSP  114 (495)
Q Consensus        38 ~ia~a~~~~I~~~d~~t~~~--vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~  114 (495)
                      -+++...++||.++..+...  .+|.+.....+|.     ......+..|.||+++++|. |||+|+.++++..+-..+.
T Consensus       698 yVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~-----~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg  772 (1057)
T PLN02919        698 YIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGS-----SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG  772 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEecCCccccCCCC-----ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            35566778888888766542  2222111111110     01112346899999999886 9999999995544321111


Q ss_pred             ---------------CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--cEEEecCcccCCCCCC
Q 011014          115 ---------------EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHV  177 (495)
Q Consensus       115 ---------------~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~  177 (495)
                                     ...+|..+|....+.|.+|.||++|++|+|||||++|++|++||.++  +.+++|..  . .|+.
T Consensus       773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G--~-~G~~  849 (1057)
T PLN02919        773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG--K-AGFK  849 (1057)
T ss_pred             cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC--C-cCCC
Confidence                           01223334444556899999999999999999999999999999755  77777632  1 4566


Q ss_pred             CCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee---eC--CCCCCcceEE-------EEecCcCeEEE
Q 011014          178 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS---DN--YDDTFHLGIF-------VLVAAAFFGYM  245 (495)
Q Consensus       178 dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~---~~--~~~g~P~GIA-------vd~~a~~~~yv  245 (495)
                      +|....++|+.|.+|+ ++.+|+|||+|.+|++|++|++++....   +.  .+...|.-+.       ....+.-.+.-
T Consensus       850 dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  928 (1057)
T PLN02919        850 DGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEAAEILTLELKGVQPPRPKSKSLKRLRRRSSADTQVIK  928 (1057)
T ss_pred             CCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCccceeEeeccccccCCCCcccchhhhhhcccccCceee
Confidence            7777889999999999 6889999999999999999999886541   11  1111222111       11101111222


Q ss_pred             EEccCCceEEEeeCCCCCcccccCCCCCCCCCCCCCCCC-CCCCccCCCCCCCCccCccchhhhh
Q 011014          246 LALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSA-RPPLVPTEDDFEKPEEGFFGSIGRL  309 (495)
Q Consensus       246 ~d~~~~Rv~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  309 (495)
                      ++-...+-+.+.+....+.   ..+|+.++|.+|.++.. .+.++      .++..|++.+=|+-
T Consensus       929 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  984 (1057)
T PLN02919        929 VDGVTSLEGDLQLKISLPP---GYHFSKEARSKFEVEVEPENAVD------IDPDEGTLSPDGRA  984 (1057)
T ss_pred             cCCcccccceEEEEEECCC---CCccCcCCCceeEEEeccCCceE------ecCCCceECCCCeE
Confidence            2223344446777777665   89999999999998754 23333      34455666554543

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.41  E-value=6.4e-12  Score=142.41  Aligned_cols=180  Identities=26%  Similarity=0.297  Sum_probs=124.5

Q ss_pred             cCCceEEEeecCCCCCCCceEEEEcC-CCcEEEEECCCCeeEE--------------EEcCCCC------ccccccCCCc
Q 011014           67 EGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENNSRPK--------------LVAGSPE------GYYGHVDGRP  125 (495)
Q Consensus        67 ~~G~~~~~~~~G~~~~~~P~GIAVd~-dG~LyVaDs~n~~ii~--------------ivaGs~~------g~~G~~dG~~  125 (495)
                      .+|...+...-+.....+-+.||++| +|.|||+|...+.+.+              +++|++.      ..+|+ ++.+
T Consensus       391 ~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD-GalA  469 (1899)
T KOG4659|consen  391 QDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD-GALA  469 (1899)
T ss_pred             CCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc-chhc
Confidence            34443333332323334678999999 9999999998885554              3566542      23554 4567


Q ss_pred             CccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC-cEEEecCcccCC--CCCCCC-CCcCcccCCCceEEEECCCCeE
Q 011014          126 RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRG--VGHVDG-PSEDAKFSNDFDVVYVGSSCSL  201 (495)
Q Consensus       126 ~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-V~tiaGg~~G~~--~g~~dG-~~~~a~f~~P~gVa~vd~~G~L  201 (495)
                      .+|+|..|.|||+|.+|+||+||.  .+||++|.+| |+|+.|...-..  -.|..+ ...+.++.+|+++++.+-++.|
T Consensus       470 ~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl  547 (1899)
T KOG4659|consen  470 QDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSL  547 (1899)
T ss_pred             ccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeE
Confidence            789999999999999999999995  7899999999 788866432111  111111 2455689999999976669999


Q ss_pred             EEEECCCCeEEEEECCCCc---------eeeCCCCC------------CcceEEEEecCcCeEEEEEccCCce
Q 011014          202 LVIDRGNQAIREIQLHDDD---------CSDNYDDT------------FHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       202 yVaD~gN~rI~~~d~~g~~---------~~~~~~~g------------~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      ||.|  ||.|.+|+.++..         |...+...            .+..||+-.  .+.+||++...+|+
T Consensus       548 ~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~--~G~lyvaEsD~rri  616 (1899)
T KOG4659|consen  548 LVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGT--DGALYVAESDGRRI  616 (1899)
T ss_pred             EEee--cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecC--CceEEEEeccchhh
Confidence            9999  4666666666544         43221111            277888876  77899999877654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.35  E-value=5.3e-11  Score=116.63  Aligned_cols=153  Identities=23%  Similarity=0.248  Sum_probs=105.4

Q ss_pred             CceEEEEc-CCCcEEEEECCCCeeEEEEcCCCC-ccccccCCCcCccccCCcceEEEcCCCCEEEEECCC--------CE
Q 011014           84 EPFSVAVS-PSGELLVLDSENNSRPKLVAGSPE-GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN--------MA  153 (495)
Q Consensus        84 ~P~GIAVd-~dG~LyVaDs~n~~ii~ivaGs~~-g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N--------~r  153 (495)
                      .|.|++++ ++|.|||++.....++  -..+.. ...-  ........+..|.++++|++|+|||+|...        .+
T Consensus        41 ~~~G~~~~~~~g~l~v~~~~~~~~~--d~~~g~~~~~~--~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   41 GPNGMAFDRPDGRLYVADSGGIAVV--DPDTGKVTVLA--DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             SEEEEEEECTTSEEEEEETTCEEEE--ETTTTEEEEEE--EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred             CCceEEEEccCCEEEEEEcCceEEE--ecCCCcEEEEe--eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence            39999999 7999999997655222  111110 0000  000012367899999999999999999875        56


Q ss_pred             EEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc--ee-------e
Q 011014          154 IRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD--CS-------D  223 (495)
Q Consensus       154 Irk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~--~~-------~  223 (495)
                      |.+++.++ +..+.                 ..+..|+||++..+...|||+|..+++|++|+++...  ..       .
T Consensus       117 v~~~~~~~~~~~~~-----------------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~  179 (246)
T PF08450_consen  117 VYRIDPDGKVTVVA-----------------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDF  179 (246)
T ss_dssp             EEEEETTSEEEEEE-----------------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-
T ss_pred             eEEECCCCeEEEEe-----------------cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEc
Confidence            99999887 44442                 2367899999654444799999999999999996422  11       1


Q ss_pred             CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeC
Q 011014          224 NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       224 ~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                      ....|.|.|+++|.  .+++||++..+.+|..+-..
T Consensus       180 ~~~~g~pDG~~vD~--~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  180 PGGPGYPDGLAVDS--DGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             SSSSCEEEEEEEBT--TS-EEEEEETTTEEEEEETT
T ss_pred             CCCCcCCCcceEcC--CCCEEEEEcCCCEEEEECCC
Confidence            33445799999997  77999999999999544433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.34  E-value=9.9e-11  Score=114.74  Aligned_cols=146  Identities=19%  Similarity=0.123  Sum_probs=101.3

Q ss_pred             CCCCceEEEEcCCCcEEEEECCCC-------eeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCC
Q 011014           81 FGMEPFSVAVSPSGELLVLDSENN-------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNM  152 (495)
Q Consensus        81 ~~~~P~GIAVd~dG~LyVaDs~n~-------~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~  152 (495)
                      .+..|.++++|++|+|||+|....       +.+..+....  ...     .....|..|.||+++++|+ |||+|+.++
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~--~~~-----~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG--KVT-----VVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS--EEE-----EEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC--eEE-----EEecCcccccceEECCcchheeecccccc
Confidence            567899999999999999997554       1222232221  111     1123578999999999997 999999999


Q ss_pred             EEEEEcCC--C--c---EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCC
Q 011014          153 AIRKISDT--G--V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY  225 (495)
Q Consensus       153 rIrk~d~~--G--V---~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~  225 (495)
                      +|++|+.+  +  +   .+++....              ....|-|++ +|.+|+|||++..+++|++|+++|..+....
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~pDG~~-vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~  221 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPG--------------GPGYPDGLA-VDSDGNLWVADWGGGRIVVFDPDGKLLREIE  221 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SS--------------SSCEEEEEE-EBTTS-EEEEEETTTEEEEEETTSCEEEEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCC--------------CCcCCCcce-EcCCCCEEEEEcCCCEEEEECCCccEEEEEc
Confidence            99999943  3  2   22211110              113588999 7999999999999999999999998776432


Q ss_pred             CC-CCcceEEEEecCcCeEEEEEc
Q 011014          226 DD-TFHLGIFVLVAAAFFGYMLAL  248 (495)
Q Consensus       226 ~~-g~P~GIAvd~~a~~~~yv~d~  248 (495)
                      -. ..|..+++-......||||..
T Consensus       222 ~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  222 LPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             -SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCCCEEEEEEECCCCCEEEEEeC
Confidence            22 479999995434568999863

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.23  E-value=5.6e-11  Score=134.98  Aligned_cols=188  Identities=20%  Similarity=0.272  Sum_probs=132.8

Q ss_pred             CCCCCCcceeeceeeeeeeeccceEEEEeCCCCc-eecCCceeEe-----cCCceEEEeecCCCCCCCceEEEEcC-CCc
Q 011014           23 SASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKT-AVSSSSMIKF-----EGGYTVETVFEGSKFGMEPFSVAVSP-SGE   95 (495)
Q Consensus        23 ~a~~~P~~iv~~~~~~ia~a~~~~I~~~d~~t~~-~vaG~~i~~~-----~~G~~~~~~~~G~~~~~~P~GIAVd~-dG~   95 (495)
                      +....|..|..+--.++..+....|+.+|.+.-. .+.|+.....     +.+..+     ..-.+..|+.+||+| ||.
T Consensus       472 A~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl-----~~~~leWPT~LaV~Pmdns  546 (1899)
T KOG4659|consen  472 AQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKL-----VDLQLEWPTSLAVDPMDNS  546 (1899)
T ss_pred             ceeccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccch-----hheeeecccceeecCCCCe
Confidence            4466777777777777777777777777666544 2233322221     111111     112357999999999 899


Q ss_pred             EEEEEC-------CCCeeEEEEcCCCCcc--cc---ccCCCcCccccCCcceEEEcCCCCEEEEECCC---CEEEEEcCC
Q 011014           96 LLVLDS-------ENNSRPKLVAGSPEGY--YG---HVDGRPRGARMNHPKGLAVDDRGNIYIADTMN---MAIRKISDT  160 (495)
Q Consensus        96 LyVaDs-------~n~~ii~ivaGs~~g~--~G---~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N---~rIrk~d~~  160 (495)
                      |||.|.       .+| ++++++|.+...  .+   +....+..+.+-.|..|||..+|.||||++..   ||||+++.+
T Consensus       547 l~Vld~nvvlrit~~~-rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~td  625 (1899)
T KOG4659|consen  547 LLVLDTNVVLRITVVH-RVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTD  625 (1899)
T ss_pred             EEEeecceEEEEccCc-cEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccC
Confidence            999996       344 556888887321  11   11122345677889999999999999999874   679999999


Q ss_pred             C-cEEEecCcccCCC---------CCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 011014          161 G-VTTIAGGKWSRGV---------GHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  217 (495)
Q Consensus       161 G-V~tiaGg~~G~~~---------g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~  217 (495)
                      | +..++|+++.+.|         ...+..+..++|+.|..+| +.++|.|||||.+|-||+++...
T Consensus       626 g~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~ala-VsPdg~v~IAD~gN~rIr~Vs~~  691 (1899)
T KOG4659|consen  626 GTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALA-VSPDGDVIIADSGNSRIRKVSAR  691 (1899)
T ss_pred             ceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEE-ECCCCcEEEecCCchhhhhhhhc
Confidence            9 8999997765432         1234468889999999999 79999999999999999988754

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.80  E-value=2.5e-07  Score=96.96  Aligned_cols=159  Identities=14%  Similarity=0.083  Sum_probs=101.7

Q ss_pred             CCCCCCceEEEEcCCCcEEEEECCC-----------CeeEEEE-cCCCCccccccCCCcCccccCCcceEEEcCCCCEEE
Q 011014           79 SKFGMEPFSVAVSPSGELLVLDSEN-----------NSRPKLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYI  146 (495)
Q Consensus        79 ~~~~~~P~GIAVd~dG~LyVaDs~n-----------~~ii~iv-aGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYV  146 (495)
                      ...+..|.+|++|++|+|||++..+           ..++.++ .....|..-.  -..-...+..|.||++.++| |||
T Consensus        10 ~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~--~~vfa~~l~~p~Gi~~~~~G-lyV   86 (367)
T TIGR02604        10 EPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK--SNVFAEELSMVTGLAVAVGG-VYV   86 (367)
T ss_pred             CCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce--eEEeecCCCCccceeEecCC-EEE
Confidence            3445699999999999999998632           1134333 2211111100  00112357899999999998 999


Q ss_pred             EECCCCEEEEE-cCCC-------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC----------
Q 011014          147 ADTMNMAIRKI-SDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN----------  208 (495)
Q Consensus       147 AD~~N~rIrk~-d~~G-------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN----------  208 (495)
                      ++.  .+|+++ +.+|       ..+++.+...     .+    ......+++++ ++.+|.|||++..+          
T Consensus        87 ~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~-----~~----~~~~~~~~~l~-~gpDG~LYv~~G~~~~~~~~~~~~  154 (367)
T TIGR02604        87 ATP--PDILFLRDKDGDDKADGEREVLLSGFGG-----QI----NNHHHSLNSLA-WGPDGWLYFNHGNTLASKVTRPGT  154 (367)
T ss_pred             eCC--CeEEEEeCCCCCCCCCCccEEEEEccCC-----CC----CcccccccCce-ECCCCCEEEecccCCCceeccCCC
Confidence            974  578888 4433       2233321110     00    00134578888 68999999988732          


Q ss_pred             ---------CeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          209 ---------QAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       209 ---------~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                               ..|.++++++..+.. ..+...|.|++++.  .+.+|+++..+....
T Consensus       155 ~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~--~G~l~~tdn~~~~~~  208 (367)
T TIGR02604       155 SDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS--WGDVFFCDNDDPPLC  208 (367)
T ss_pred             ccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC--CCCEEEEccCCCcee
Confidence                     579999999876543 34455699999997  567899988665543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.73  E-value=6.8e-07  Score=91.88  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=105.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECC-----------CC
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-----------NM  152 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~-----------N~  152 (495)
                      .+.++.++..|.|++++.+.. ++..-.|......   .-......+++|+.+.+|++|.+||.|..           ..
T Consensus        68 ~~~~~~~d~~g~Lv~~~~g~~-~~~~~~~~~~t~~---~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          68 FSSGALIDAGGRLIACEHGVR-LLDPDTGGKITLL---AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             cccceeecCCCeEEEEccccE-EEeccCCceeEEe---ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence            377888898999999887654 2222112110000   01112346789999999999999999987           23


Q ss_pred             EEEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC---Cc------ee
Q 011014          153 AIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD---DD------CS  222 (495)
Q Consensus       153 rIrk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g---~~------~~  222 (495)
                      +|+++++.| +..+..                ..+..|++||+..+...+|++|+..++|.+++.+.   ..      ..
T Consensus       144 ~lyr~~p~g~~~~l~~----------------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~  207 (307)
T COG3386         144 SLYRVDPDGGVVRLLD----------------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD  207 (307)
T ss_pred             eEEEEcCCCCEEEeec----------------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE
Confidence            688888766 444321                12678999995444449999999999999999872   11      11


Q ss_pred             eCCCCCCcceEEEEecCcCeEEEEEccCC-ceEEEeeCCCC
Q 011014          223 DNYDDTFHLGIFVLVAAAFFGYMLALLQR-RVQAMFSSKDD  262 (495)
Q Consensus       223 ~~~~~g~P~GIAvd~~a~~~~yv~d~~~~-Rv~~~~~s~~~  262 (495)
                      ...+.|.|-|+++|.  .+++|++...+. +|  ..|+.++
T Consensus       208 ~~~~~G~PDG~~vDa--dG~lw~~a~~~g~~v--~~~~pdG  244 (307)
T COG3386         208 FDEEPGLPDGMAVDA--DGNLWVAAVWGGGRV--VRFNPDG  244 (307)
T ss_pred             ccCCCCCCCceEEeC--CCCEEEecccCCceE--EEECCCC
Confidence            234678999999997  788997666664 88  5555553

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=7.3e-07  Score=94.02  Aligned_cols=150  Identities=21%  Similarity=0.199  Sum_probs=107.4

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCC-CEEEEEC--CCCEEEEEc
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIADT--MNMAIRKIS  158 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dG-nIYVAD~--~N~rIrk~d  158 (495)
                      ..|.+++++++|+ +||++...+ .+.++........+. -.     .-..|.++++|++| .+||+|.  +++.|.+||
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~-~v~vid~~~~~~~~~-~~-----vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid  146 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSN-TVSVIDTATNTVLGS-IP-----VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID  146 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCC-eEEEEcCcccceeeE-ee-----eccCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence            6899999999887 999998877 455554332122111 11     11289999999988 6999999  589999999


Q ss_pred             CCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCCCceee------CCCCCCcc
Q 011014          159 DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDDDCSD------NYDDTFHL  231 (495)
Q Consensus       159 ~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-LyVaD~gN~rI~~~d~~g~~~~~------~~~~g~P~  231 (495)
                      ....+.+.-...|               ..|.+++ ++++|. +||+|..+++|..|+..+..+..      ......|.
T Consensus       147 ~~t~~~~~~~~vG---------------~~P~~~a-~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~  210 (381)
T COG3391         147 AATNKVTATIPVG---------------NTPTGVA-VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPA  210 (381)
T ss_pred             CCCCeEEEEEecC---------------CCcceEE-ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCc
Confidence            7763333222211               1578888 677776 99999999999999999887763      22333599


Q ss_pred             eEEEEecCcCeEEEEEccC--CceEEE
Q 011014          232 GIFVLVAAAFFGYMLALLQ--RRVQAM  256 (495)
Q Consensus       232 GIAvd~~a~~~~yv~d~~~--~Rv~~~  256 (495)
                      +++++.. +..+|+++..+  .++.++
T Consensus       211 ~i~v~~~-g~~~yV~~~~~~~~~v~~i  236 (381)
T COG3391         211 GIAVDPD-GNRVYVANDGSGSNNVLKI  236 (381)
T ss_pred             eEEECCC-CCEEEEEeccCCCceEEEE
Confidence            9999973 45789999988  466443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=1.6e-06  Score=91.45  Aligned_cols=151  Identities=21%  Similarity=0.314  Sum_probs=108.6

Q ss_pred             CCCceEEEEcCCC-cEEEEECC--CCeeEEEEcCCCC--ccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEE
Q 011014           82 GMEPFSVAVSPSG-ELLVLDSE--NNSRPKLVAGSPE--GYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIR  155 (495)
Q Consensus        82 ~~~P~GIAVd~dG-~LyVaDs~--n~~ii~ivaGs~~--g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIr  155 (495)
                      +..|.+++++++| .+||+|..  ++ .+.++.....  ..... .|       ..|.|+++|++|+ +||+|..+++|.
T Consensus       115 G~~P~~~~~~~~~~~vYV~n~~~~~~-~vsvid~~t~~~~~~~~-vG-------~~P~~~a~~p~g~~vyv~~~~~~~v~  185 (381)
T COG3391         115 GLGPVGLAVDPDGKYVYVANAGNGNN-TVSVIDAATNKVTATIP-VG-------NTPTGVAVDPDGNKVYVTNSDDNTVS  185 (381)
T ss_pred             ccCCceEEECCCCCEEEEEecccCCc-eEEEEeCCCCeEEEEEe-cC-------CCcceEEECCCCCeEEEEecCCCeEE
Confidence            3589999999977 79999995  45 5555543221  11111 11       1689999999999 999999999999


Q ss_pred             EEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EEEEECCC--CeEEEEECCCCceeeC--CCCC-C
Q 011014          156 KISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGN--QAIREIQLHDDDCSDN--YDDT-F  229 (495)
Q Consensus       156 k~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-LyVaD~gN--~rI~~~d~~g~~~~~~--~~~g-~  229 (495)
                      +|+.++...+.+ ..+         .....+..|.+++ ++.+|. +||++.++  ++|.+++.....+...  .... .
T Consensus       186 vi~~~~~~v~~~-~~~---------~~~~~~~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~  254 (381)
T COG3391         186 VIDTSGNSVVRG-SVG---------SLVGVGTGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGA  254 (381)
T ss_pred             EEeCCCcceecc-ccc---------cccccCCCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCC
Confidence            999887544421 110         1234578999999 566665 99999988  6999999998776532  2222 6


Q ss_pred             cceEEEEecCcCeEEEEEccCCce
Q 011014          230 HLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       230 P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      |.+++++. .+.++|++....+.|
T Consensus       255 ~~~v~~~p-~g~~~yv~~~~~~~V  277 (381)
T COG3391         255 PRGVAVDP-AGKAAYVANSQGGTV  277 (381)
T ss_pred             CCceeECC-CCCEEEEEecCCCeE
Confidence            88999887 456789998887777

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.64  E-value=3.5e-08  Score=65.84  Aligned_cols=28  Identities=46%  Similarity=0.794  Sum_probs=26.7

Q ss_pred             cCCcceEEEcCCCCEEEEECCCCEEEEE
Q 011014          130 MNHPKGLAVDDRGNIYIADTMNMAIRKI  157 (495)
Q Consensus       130 f~~P~GIAVD~dGnIYVAD~~N~rIrk~  157 (495)
                      |+.|.|||+|++|+|||||++||||++|
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            6789999999999999999999999987

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.62  E-value=1.3e-06  Score=89.94  Aligned_cols=157  Identities=17%  Similarity=0.069  Sum_probs=100.8

Q ss_pred             CCCceEEEEcCCCcEEEEECCCC----------eeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCC-CEEEEECC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENN----------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIADTM  150 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~----------~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dG-nIYVAD~~  150 (495)
                      .++|.++.++++|.+||+|..+.          +.+..+.... +..     ......+..|+|||+++|| .+||+|+.
T Consensus       110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~~~-----~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-GVV-----RLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC-CEE-----EeecCcEEecCceEECCCCCEEEEEeCC
Confidence            47999999999999999998731          1122222110 000     0111237789999999999 59999999


Q ss_pred             CCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceeeCCCC-C
Q 011014          151 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSDNYDD-T  228 (495)
Q Consensus       151 N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~~g~~~~~~~~~-g  228 (495)
                      .++|.+++-+-...-.++...    .....   ..=..|-|++ +|.+|+||++-..+ .+|.+|+++|.......-+ .
T Consensus       184 ~~~i~r~~~d~~~g~~~~~~~----~~~~~---~~~G~PDG~~-vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~  255 (307)
T COG3386         184 ANRIHRYDLDPATGPIGGRRG----FVDFD---EEPGLPDGMA-VDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVK  255 (307)
T ss_pred             CCeEEEEecCcccCccCCcce----EEEcc---CCCCCCCceE-EeCCCCEEEecccCCceEEEECCCCcEEEEEECCCC
Confidence            999999984410000000000    00000   0012677788 79999999655444 5999999998887664444 5


Q ss_pred             CcceEEEEecCcCeEEEEEccCCc
Q 011014          229 FHLGIFVLVAAAFFGYMLALLQRR  252 (495)
Q Consensus       229 ~P~GIAvd~~a~~~~yv~d~~~~R  252 (495)
                      .|..+++-......+||+....+.
T Consensus       256 ~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         256 RPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             CCccceEeCCCcCEEEEEecCCCC
Confidence            677888775445688888876644

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.40  E-value=1.7e-05  Score=82.20  Aligned_cols=167  Identities=16%  Similarity=0.151  Sum_probs=103.9

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcC
Q 011014           82 GMEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD  159 (495)
Q Consensus        82 ~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~  159 (495)
                      ..+|+.+.++|+|+ |||+|.+.+++..+-.....+.... ........-..|..|+++++|+ +||+.-.++.|.+|+-
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~  221 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDY  221 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEee
Confidence            46899999999976 9999999984443322221111100 0000111235799999999986 9999999999999883


Q ss_pred             ---CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC--cee---e-CCCCCC
Q 011014          160 ---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD--DCS---D-NYDDTF  229 (495)
Q Consensus       160 ---~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~--~~~---~-~~~~g~  229 (495)
                         +| ++.+..-...  +.   +   ...-+.|.+|++..+...|||++++.+.|..|+++..  .+.   . ..+...
T Consensus       222 ~~~~g~~~~~~~~~~~--~~---~---~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~  293 (345)
T PF10282_consen  222 DPSDGSLTEIQTISTL--PE---G---FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF  293 (345)
T ss_dssp             ETTTTEEEEEEEEESC--ET---T---SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred             cccCCceeEEEEeeec--cc---c---ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC
Confidence               44 2222110000  00   0   0111478999954444579999999999999998542  222   1 233446


Q ss_pred             cceEEEEecCcCeEEEEEccCCceEEEee
Q 011014          230 HLGIFVLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       230 P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      |++++++. .+..+||++...++|..+-.
T Consensus       294 Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  294 PRHFAFSP-DGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEEEEE-T-TSSEEEEEETTTTEEEEEEE
T ss_pred             ccEEEEeC-CCCEEEEEecCCCeEEEEEE
Confidence            99999976 46789999999999954433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.38  E-value=3.1e-06  Score=88.17  Aligned_cols=142  Identities=12%  Similarity=0.121  Sum_probs=97.4

Q ss_pred             CCceEEEEcCCC-cEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECC-----------
Q 011014           83 MEPFSVAVSPSG-ELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-----------  150 (495)
Q Consensus        83 ~~P~GIAVd~dG-~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~-----------  150 (495)
                      -+|.||+++..| +|||||..-. ...+ .... +..-..........+....++.||++|.||++|+.           
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V-~p~g-~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a  191 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLG-LLKV-GPEG-GLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFA  191 (376)
T ss_pred             CCcceEEeccCCCeEEEEeccee-eEEE-CCCC-CcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEe
Confidence            489999999866 9999998765 4333 2111 11000011122245677789999999999999984           


Q ss_pred             ------CCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 011014          151 ------NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       151 ------N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                            ++|+.++|+..  ++++                 ...|..|+||++..+...+.||++...||+++-..|....
T Consensus       192 ~l~g~~~GRl~~YD~~tK~~~VL-----------------ld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~g  254 (376)
T KOG1520|consen  192 ALEGDPTGRLFRYDPSTKVTKVL-----------------LDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAG  254 (376)
T ss_pred             eecCCCccceEEecCcccchhhh-----------------hhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccC
Confidence                  34555555433  1222                 2357889999965666678999999999999999998774


Q ss_pred             e-----CCCCCCcceEEEEecCcCeEEEE
Q 011014          223 D-----NYDDTFHLGIFVLVAAAFFGYML  246 (495)
Q Consensus       223 ~-----~~~~g~P~GIAvd~~a~~~~yv~  246 (495)
                      +     .+-.|+|..|-.+.  .+..+|+
T Consensus       255 t~EvFa~~LPG~PDNIR~~~--~G~fWVa  281 (376)
T KOG1520|consen  255 TSEVFAEGLPGYPDNIRRDS--TGHFWVA  281 (376)
T ss_pred             chhhHhhcCCCCCcceeECC--CCCEEEE
Confidence            3     45789999999995  4443443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.35  E-value=1.7e-05  Score=79.67  Aligned_cols=162  Identities=14%  Similarity=0.141  Sum_probs=105.7

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEE-------------------------cCCC-------CccccccCCCc----
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLV-------------------------AGSP-------EGYYGHVDGRP----  125 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~iv-------------------------aGs~-------~g~~G~~dG~~----  125 (495)
                      +.+|++|.+++||..||+|..+. |.++-                         ++.+       .|..|..|-.-    
T Consensus       103 Ga~Phgiv~gpdg~~Witd~~~a-I~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~  181 (353)
T COG4257         103 GASPHGIVVGPDGSAWITDTGLA-IGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS  181 (353)
T ss_pred             CCCCceEEECCCCCeeEecCcce-eEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCcee
Confidence            57899999999999999999873 44331                         1100       01112111000    


Q ss_pred             --CccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEE
Q 011014          126 --RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLL  202 (495)
Q Consensus       126 --~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~Ly  202 (495)
                        ..-+=..|.||++.++|.+|++....+.|-++|+ .|...+.-..             ++.-..-..|- .|+-|.++
T Consensus       182 vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P-------------~~~~~gsRriw-sdpig~~w  247 (353)
T COG4257         182 VFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQP-------------NALKAGSRRIW-SDPIGRAW  247 (353)
T ss_pred             eeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCC-------------Ccccccccccc-cCccCcEE
Confidence              0112246889999999999999999999999994 4422111111             01111223344 78999999


Q ss_pred             EEECCCCeEEEEECCCCceeeC--CCC-CCcceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          203 VIDRGNQAIREIQLHDDDCSDN--YDD-TFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       203 VaD~gN~rI~~~d~~g~~~~~~--~~~-g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      +++.++.++.+|++....-..-  .++ -.|..+-||.  .+.++..+...+-+.  -|+.+.
T Consensus       248 ittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~--~grVW~sea~agai~--rfdpet  306 (353)
T COG4257         248 ITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR--HGRVWLSEADAGAIG--RFDPET  306 (353)
T ss_pred             EeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc--CCcEEeeccccCcee--ecCccc
Confidence            9999999999999988764432  222 2588888886  788899888888773  444443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.35  E-value=1e-05  Score=81.12  Aligned_cols=147  Identities=21%  Similarity=0.193  Sum_probs=102.5

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCC--CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSP--EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~--~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~  159 (495)
                      +..|..|+.++||.+|+++...+.+-++-..++  +.+.-   |     .=.+|+||.+++||..||+|+++ .|.+++.
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL---g-----~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dp  131 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL---G-----SGASPHGIVVGPDGSAWITDTGL-AIGRLDP  131 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEec---C-----CCCCCceEEECCCCCeeEecCcc-eeEEecC
Confidence            357999999999999999998885555432222  11110   1     12589999999999999999988 9999996


Q ss_pred             -CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEE
Q 011014          160 -TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFV  235 (495)
Q Consensus       160 -~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAv  235 (495)
                       ++ ++++.--          +....+.|+.+    +.|..|+|+++.. ++---++|+....+..  ....+-|.||++
T Consensus       132 kt~evt~f~lp----------~~~a~~nlet~----vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaPqG~gpyGi~a  196 (353)
T COG4257         132 KTLEVTRFPLP----------LEHADANLETA----VFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAPQGGGPYGICA  196 (353)
T ss_pred             cccceEEeecc----------cccCCCcccce----eeCCCccEEEeec-cccceecCcccCceeeeccCCCCCCcceEE
Confidence             44 6665211          11123344442    4799999999986 3333477777777654  334446999999


Q ss_pred             EecCcCeEEEEEccCCceE
Q 011014          236 LVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       236 d~~a~~~~yv~d~~~~Rv~  254 (495)
                      ..  .+.+|.+.+..+-+.
T Consensus       197 tp--dGsvwyaslagnaia  213 (353)
T COG4257         197 TP--DGSVWYASLAGNAIA  213 (353)
T ss_pred             CC--CCcEEEEeccccceE
Confidence            97  677899988777663

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.33  E-value=2.5e-05  Score=81.87  Aligned_cols=170  Identities=18%  Similarity=0.160  Sum_probs=96.2

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCC-------Cccc--cccCCC---cCccccCCcceEEEcCCCCEEEEECC
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSP-------EGYY--GHVDGR---PRGARMNHPKGLAVDDRGNIYIADTM  150 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~-------~g~~--G~~dG~---~~~a~f~~P~GIAVD~dGnIYVAD~~  150 (495)
                      ..+.++++++||.|||++..+........+..       .+..  -..++.   .....+.+|.||++|++|+||++|..
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence            34889999999999999875321000000000       0000  000111   11345889999999999999999987


Q ss_pred             CCEEEEEcCC------CcEEEecCc-ccCCCC---CC-------------CCCCcCcccCCCceEEEEC-------CCCe
Q 011014          151 NMAIRKISDT------GVTTIAGGK-WSRGVG---HV-------------DGPSEDAKFSNDFDVVYVG-------SSCS  200 (495)
Q Consensus       151 N~rIrk~d~~------GV~tiaGg~-~G~~~g---~~-------------dG~~~~a~f~~P~gVa~vd-------~~G~  200 (495)
                      ++....++.-      |--.+.+.. .....+   ..             .-......+..|.|+++..       =.|.
T Consensus       204 ~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~  283 (367)
T TIGR02604       204 DPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGL  283 (367)
T ss_pred             CCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCC
Confidence            6655555421      100000000 000000   00             0001112345789998763       2579


Q ss_pred             EEEEECCCCeEEEEECC--CCceee--------CCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          201 LLVIDRGNQAIREIQLH--DDDCSD--------NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       201 LyVaD~gN~rI~~~d~~--g~~~~~--------~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      ++|+|...++|..+.++  +.....        ...-+.|.+|++..  .+.|||+|+.+..++
T Consensus       284 ~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~p--DG~Lyv~d~~~~~i~  345 (367)
T TIGR02604       284 LLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGP--DGALYVSDWYDRGIE  345 (367)
T ss_pred             EEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECC--CCCEEEEEeccCccc
Confidence            99999999999999876  321211        11114688888776  678999998776664

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.25  E-value=8.9e-06  Score=90.55  Aligned_cols=155  Identities=17%  Similarity=0.142  Sum_probs=113.9

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEE-EEcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECC--CCEEEE
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM--NMAIRK  156 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~-ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~--N~rIrk  156 (495)
                      +..|.|||||. .-|||-+|+.+.+|-. .++|+.. +.-      -...|-+|.+|++|. .|+||-+|+.  |-.|-.
T Consensus      1067 L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~r-kvL------f~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIet 1139 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSER-KVL------FYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIET 1139 (1289)
T ss_pred             CCCccceeeeeccceeeeeccccchhheeecCCcee-eEE------EeecccCcceEEeecccCceeeccccccCCccee
Confidence            46899999997 5679999999884422 2344431 111      123578999999999 8899999985  667888


Q ss_pred             EcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceE
Q 011014          157 ISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGI  233 (495)
Q Consensus       157 ~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GI  233 (495)
                      .+.+|  -..+.                ..-+..|+|+.++.-+..|--+|.+|+|+-.+.++|..-.+ +...-.|.+|
T Consensus      1140 s~mDG~NrRili----------------n~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~i 1203 (1289)
T KOG1214|consen 1140 SSMDGENRRILI----------------NTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSI 1203 (1289)
T ss_pred             eccCCccceEEe----------------ecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhcccCceee
Confidence            88777  22221                12345799999766677888899999999999999865443 4555679999


Q ss_pred             EEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      .-+.   ...|.+|+.-+||.++.--...
T Consensus      1204 tsy~---~~fY~TDWk~n~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1204 TSYA---DHFYHTDWKRNGVVSVNKHSGQ 1229 (1289)
T ss_pred             eecc---ccceeeccccCceEEeeccccc
Confidence            8884   5689999999999766554444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.17  E-value=0.00025  Score=73.56  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=101.1

Q ss_pred             CCCCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCcccccc--------CCCc-CccccCCcceEEEcCCCC-EEEEEC
Q 011014           81 FGMEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHV--------DGRP-RGARMNHPKGLAVDDRGN-IYIADT  149 (495)
Q Consensus        81 ~~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~--------dG~~-~~a~f~~P~GIAVD~dGn-IYVAD~  149 (495)
                      .+..|+.|+++++|. |||+.+.... +.++.-...|..+..        .|+. ....-.+|+.+.++++|+ |||+|.
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g~-v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl  163 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGGS-VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL  163 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCCe-EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec
Confidence            457899999999876 8999987773 333321110111110        0111 123457899999999987 999999


Q ss_pred             CCCEEEEEcCC--C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC--CCcee-
Q 011014          150 MNMAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH--DDDCS-  222 (495)
Q Consensus       150 ~N~rIrk~d~~--G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~--g~~~~-  222 (495)
                      ++.+|++|+-+  +  +........             ..-..|..+++..+...+||++..++.|.+|+.+  ..... 
T Consensus       164 G~D~v~~~~~~~~~~~l~~~~~~~~-------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~  230 (345)
T PF10282_consen  164 GADRVYVYDIDDDTGKLTPVDSIKV-------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE  230 (345)
T ss_dssp             TTTEEEEEEE-TTS-TEEEEEEEEC-------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             CCCEEEEEEEeCCCceEEEeecccc-------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE
Confidence            99999999832  2  222111000             1124689999555456799999999999999988  22221 


Q ss_pred             -----eC--CCCC--CcceEEEEecCcCeEEEEEccCCceE
Q 011014          223 -----DN--YDDT--FHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       223 -----~~--~~~g--~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                           +.  ...+  .|.+|++.. .+.++||+....+.|.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  231 IQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             EEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEE
T ss_pred             EEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEE
Confidence                 11  1122  588999985 3678999999999983

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.14  E-value=0.00064  Score=69.34  Aligned_cols=162  Identities=12%  Similarity=0.102  Sum_probs=97.0

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccC-CCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcC
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVD-GRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD  159 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~d-G~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~  159 (495)
                      ..|++++++++|+ |||++...+ .+.++.-...+...... .......-..|.+++++++|. +||++...+.|.+++-
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~~~-~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~  204 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLKED-RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL  204 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCCCC-EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence            4689999999875 889998777 44444311111110000 000000124699999999987 8999998999988883


Q ss_pred             ---CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC--ce---eeCCCCCCc
Q 011014          160 ---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD--DC---SDNYDDTFH  230 (495)
Q Consensus       160 ---~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~--~~---~~~~~~g~P  230 (495)
                         .| +..+ ..- ...+....+      -..|.+|++.++...|||++++.+.|..|+.+.+  ..   ........|
T Consensus       205 ~~~~~~~~~~-~~~-~~~p~~~~~------~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p  276 (330)
T PRK11028        205 KDPHGEIECV-QTL-DMMPADFSD------TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP  276 (330)
T ss_pred             eCCCCCEEEE-EEE-ecCCCcCCC------CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence               23 2222 100 000000001      1246677743444469999999999999887432  22   112222368


Q ss_pred             ceEEEEecCcCeEEEEEccCCceE
Q 011014          231 LGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       231 ~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      .+++++. .+.++|++....+.|.
T Consensus       277 ~~~~~~~-dg~~l~va~~~~~~v~  299 (330)
T PRK11028        277 RGFNIDH-SGKYLIAAGQKSHHIS  299 (330)
T ss_pred             CceEECC-CCCEEEEEEccCCcEE
Confidence            9999886 4668999998888883

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.13  E-value=3.4e-06  Score=56.21  Aligned_cols=28  Identities=29%  Similarity=0.465  Sum_probs=25.8

Q ss_pred             cCCCceEEEECCCCeEEEEECCCCeEEEE
Q 011014          186 FSNDFDVVYVGSSCSLLVIDRGNQAIREI  214 (495)
Q Consensus       186 f~~P~gVa~vd~~G~LyVaD~gN~rI~~~  214 (495)
                      |+.|.||+ ++++|+|||+|++|+||++|
T Consensus         1 f~~P~gva-v~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVA-VDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEE-EETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEE-EeCCCCEEEEECCCCEEEEC
Confidence            67899999 57999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.08  E-value=0.0003  Score=73.60  Aligned_cols=119  Identities=14%  Similarity=0.199  Sum_probs=89.6

Q ss_pred             CCcceEEEcCCC-CEEEEECCCCEEEEEcCCC-c-EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC
Q 011014          131 NHPKGLAVDDRG-NIYIADTMNMAIRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG  207 (495)
Q Consensus       131 ~~P~GIAVD~dG-nIYVAD~~N~rIrk~d~~G-V-~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g  207 (495)
                      -+|.||+++..| +|||||.+ --+.+++..| + ..++....            ...|..-+++. ++++|.||++|..
T Consensus       115 GRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~------------G~~~kf~N~ld-I~~~g~vyFTDSS  180 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAE------------GKPFKFLNDLD-IDPEGVVYFTDSS  180 (376)
T ss_pred             CCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceecccccc------------CeeeeecCcee-EcCCCeEEEeccc
Confidence            489999999977 89999974 5688899776 3 33332211            13455667777 4669999999953


Q ss_pred             -----------------CCeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCCCc
Q 011014          208 -----------------NQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPR  264 (495)
Q Consensus       208 -----------------N~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~~~  264 (495)
                                       ++|+.++|+.++.... ..+..||.|+|+... +.++.+++...+|+.+.|-+.....
T Consensus       181 sk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d-~sfvl~~Et~~~ri~rywi~g~k~g  254 (376)
T KOG1520|consen  181 SKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPD-GSFVLVAETTTARIKRYWIKGPKAG  254 (376)
T ss_pred             cccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCC-CCEEEEEeeccceeeeeEecCCccC
Confidence                             4677777777766643 567779999999974 5678999999999999999988754

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.06  E-value=4.1e-05  Score=85.45  Aligned_cols=158  Identities=16%  Similarity=0.120  Sum_probs=116.3

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEE-EcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEcC
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~i-vaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~  159 (495)
                      .-|.||++|- +--||-+|-..+.|.+- +.|.       ......+..|..|.|||||. ..|||-+|+.+.+|-+-.-
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~-------Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~L 1097 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGA-------EPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALL 1097 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCC-------CCceeecccCCCccceeeeeccceeeeeccccchhheeec
Confidence            3477888885 55688899777644322 1121       11112345788999999998 4579999999999998888


Q ss_pred             CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC--CCCeEEEEECCCCce--eeCCCCCCcceE
Q 011014          160 TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR--GNQAIREIQLHDDDC--SDNYDDTFHLGI  233 (495)
Q Consensus       160 ~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~--gN~rI~~~d~~g~~~--~~~~~~g~P~GI  233 (495)
                      +|  .+.+.                ..-|-+|.+|+++.-.|+||-+|+  .|-.|-..+++|+.-  ..+...|+|.|+
T Consensus      1098 dG~~rkvLf----------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLPNGL 1161 (1289)
T KOG1214|consen 1098 DGSERKVLF----------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGL 1161 (1289)
T ss_pred             CCceeeEEE----------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecccCCCCCc
Confidence            88  22221                123679999997677999999997  577899999999764  347788999999


Q ss_pred             EEEecCcCeEEEEEccCCceEEEeeCCCCCc
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMFSSKDDPR  264 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~~~~~  264 (495)
                      .+|.- ...+-++|..++|+.-+..+...-|
T Consensus      1162 tfdpf-s~~LCWvDAGt~rleC~~p~g~gRR 1191 (1289)
T KOG1214|consen 1162 TFDPF-SKLLCWVDAGTKRLECTLPDGTGRR 1191 (1289)
T ss_pred             eeCcc-cceeeEEecCCcceeEecCCCCcch
Confidence            99973 3467889999999977777766544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.03  E-value=0.00031  Score=71.72  Aligned_cols=157  Identities=13%  Similarity=0.064  Sum_probs=98.4

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEc--
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKIS--  158 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d--  158 (495)
                      ..|..|+++++|+ |||+......+ .++.-...+...... .  ......|.+|+++++|+ ||++....++|.+|+  
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i-~~~~~~~~g~l~~~~-~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~  110 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRV-LSYRIADDGALTFAA-E--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLD  110 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcE-EEEEECCCCceEEee-e--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence            3688999999987 78887655533 332111111111000 0  01123699999999987 999988888888886  


Q ss_pred             CCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC-cee-------eCCCCCC
Q 011014          159 DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD-DCS-------DNYDDTF  229 (495)
Q Consensus       159 ~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~-~~~-------~~~~~g~  229 (495)
                      .+| +.......              .....|+++++..+...|||++.+.++|.+++++.. .+.       .......
T Consensus       111 ~~g~~~~~~~~~--------------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~  176 (330)
T PRK11028        111 KDGIPVAPIQII--------------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG  176 (330)
T ss_pred             CCCCCCCceeec--------------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCC
Confidence            345 21111100              012468888843344578999999999999998752 221       1112234


Q ss_pred             cceEEEEecCcCeEEEEEccCCceEEEee
Q 011014          230 HLGIFVLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       230 P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      |.++++.. .+.++|+++...+.|...-.
T Consensus       177 p~~~~~~p-dg~~lyv~~~~~~~v~v~~~  204 (330)
T PRK11028        177 PRHMVFHP-NQQYAYCVNELNSSVDVWQL  204 (330)
T ss_pred             CceEEECC-CCCEEEEEecCCCEEEEEEE
Confidence            89999985 45689999998899844443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.79  E-value=9.1e-05  Score=62.89  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=50.4

Q ss_pred             eEEEcCC-CCEEEEEC-----------------CCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEE
Q 011014          135 GLAVDDR-GNIYIADT-----------------MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVY  194 (495)
Q Consensus       135 GIAVD~d-GnIYVAD~-----------------~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~  194 (495)
                      +|+|+.+ |.||++|+                 .++|+.++|+..  +++++.                 .|..|+||++
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-----------------~L~fpNGVal   64 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-----------------GLYFPNGVAL   64 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-----------------EESSEEEEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-----------------CCCccCeEEE
Confidence            7899998 99999998                 267999999766  555543                 3678999996


Q ss_pred             ECCCCeEEEEECCCCeEEEEECCC
Q 011014          195 VGSSCSLLVIDRGNQAIREIQLHD  218 (495)
Q Consensus       195 vd~~G~LyVaD~gN~rI~~~d~~g  218 (495)
                      ..+...|+|+++..+||.++-+.|
T Consensus        65 s~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   65 SPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             -TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             cCCCCEEEEEeccCceEEEEEEeC
Confidence            444556999999999999998876

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.60  E-value=0.00088  Score=69.51  Aligned_cols=156  Identities=17%  Similarity=0.088  Sum_probs=90.2

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEc--CCCCccccccCCCcCccccCCcceEEEcCC----CCEEEEECCC-----
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDR----GNIYIADTMN-----  151 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~iva--Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~d----GnIYVAD~~N-----  151 (495)
                      ..|++|++.+||.|||++. .. .+.++.  |.......... ...........|||++++    +.|||+-+..     
T Consensus         2 ~~P~~~a~~pdG~l~v~e~-~G-~i~~~~~~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    2 NNPRSMAFLPDGRLLVAER-SG-RIWVVDKDGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             SSEEEEEEETTSCEEEEET-TT-EEEEEETTTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CCceEEEEeCCCcEEEEeC-Cc-eEEEEeCCCcCcceecccc-cccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            4799999999999999998 44 455544  22101111111 111223456789999994    8899987732     


Q ss_pred             ---CEEEEEcC-CC------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC-------------CC
Q 011014          152 ---MAIRKISD-TG------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-------------GN  208 (495)
Q Consensus       152 ---~rIrk~d~-~G------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~-------------gN  208 (495)
                         ++|.++.. ++      ..++.-+...          .......-..|+ ++++|.|||+--             ..
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----------~~~~~H~g~~l~-fgpDG~LYvs~G~~~~~~~~~~~~~~~  147 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPD----------TSSGNHNGGGLA-FGPDGKLYVSVGDGGNDDNAQDPNSLR  147 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEE-E-TTSEEEEEEB-TTTGGGGCSTTSST
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCC----------CCCCCCCCcccc-CCCCCcEEEEeCCCCCccccccccccc
Confidence               56777662 22      1222211110          011233445576 789999999842             24


Q ss_pred             CeEEEEECCCCcee--------------eCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          209 QAIREIQLHDDDCS--------------DNYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       209 ~rI~~~d~~g~~~~--------------~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      ..|.+|+++|....              +..+.-.|.+++++.. .+.+|+++......
T Consensus       148 G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~-tg~l~~~d~G~~~~  205 (331)
T PF07995_consen  148 GKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPN-TGRLWAADNGPDGW  205 (331)
T ss_dssp             TEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETT-TTEEEEEEE-SSSS
T ss_pred             ceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECC-CCcEEEEccCCCCC
Confidence            68999999986321              1223334999999984 27899999776655

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.54  E-value=0.007  Score=65.61  Aligned_cols=166  Identities=14%  Similarity=0.070  Sum_probs=95.2

Q ss_pred             CCceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCcc-ccccCCCcCccccCCcceEEEcCCC----
Q 011014           68 GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGY-YGHVDGRPRGARMNHPKGLAVDDRG----  142 (495)
Q Consensus        68 ~G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~-~G~~dG~~~~a~f~~P~GIAVD~dG----  142 (495)
                      .++.++....|   +..|++|++.+||+|||++....++..+..+..... ...............+.|||++++-    
T Consensus        18 ~~f~~~~va~G---L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~   94 (454)
T TIGR03606        18 ENFDKKVLLSG---LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEK   94 (454)
T ss_pred             CCcEEEEEECC---CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccC
Confidence            34444444443   458999999999999999985443444433222111 1111111111235678899998653    


Q ss_pred             ---CEEEEEC---------CCCEEEEEcCC--C-----cEEEe-cCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEE
Q 011014          143 ---NIYIADT---------MNMAIRKISDT--G-----VTTIA-GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLL  202 (495)
Q Consensus       143 ---nIYVAD~---------~N~rIrk~d~~--G-----V~tia-Gg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~Ly  202 (495)
                         .|||+=+         ...+|.++.-+  +     ..++. +...+             ....-..|+ ++++|.||
T Consensus        95 ~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-------------~~H~GgrI~-FgPDG~LY  160 (454)
T TIGR03606        95 GNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-------------NDHNGGRLV-FGPDGKIY  160 (454)
T ss_pred             CCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-------------CCcCCceEE-ECCCCcEE
Confidence               5999832         24678877622  1     22232 21110             112333455 68888999


Q ss_pred             EEECC--------------------------------CCeEEEEECCCCce------------eeCCCCCCcceEEEEec
Q 011014          203 VIDRG--------------------------------NQAIREIQLHDDDC------------SDNYDDTFHLGIFVLVA  238 (495)
Q Consensus       203 VaD~g--------------------------------N~rI~~~d~~g~~~------------~~~~~~g~P~GIAvd~~  238 (495)
                      |+--.                                ...|.+|+++|...            .+..+.-.|.|++++. 
T Consensus       161 Vs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-  239 (454)
T TIGR03606       161 YTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-  239 (454)
T ss_pred             EEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-
Confidence            86322                                22688999888531            1233334589999997 


Q ss_pred             CcCeEEEEEccCCc
Q 011014          239 AAFFGYMLALLQRR  252 (495)
Q Consensus       239 a~~~~yv~d~~~~R  252 (495)
                       .+.+|+++.....
T Consensus       240 -~G~Lw~~e~Gp~~  252 (454)
T TIGR03606       240 -DGTLYASEQGPNS  252 (454)
T ss_pred             -CCCEEEEecCCCC
Confidence             5678888877653

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.36  E-value=0.0046  Score=64.16  Aligned_cols=169  Identities=19%  Similarity=0.198  Sum_probs=89.4

Q ss_pred             CCceEEEEcCCCcEEEEECCCC-------------eeEEEEc-CCCCc---cccc--cCCCcCccccCCcceEEEcCC-C
Q 011014           83 MEPFSVAVSPSGELLVLDSENN-------------SRPKLVA-GSPEG---YYGH--VDGRPRGARMNHPKGLAVDDR-G  142 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~-------------~ii~iva-Gs~~g---~~G~--~dG~~~~a~f~~P~GIAVD~d-G  142 (495)
                      -.-.+|++++||.|||+-....             .++++-. |+...   ..+.  .+...-+..|.+|.++++|+. |
T Consensus       114 H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg  193 (331)
T PF07995_consen  114 HNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTG  193 (331)
T ss_dssp             S-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTT
T ss_pred             CCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCC
Confidence            3457799999999999854322             3444432 22100   0000  011112346899999999998 9


Q ss_pred             CEEEEECCCC---EEEEEcCCCcE---EEecCcc--cCCCC-CCCC-CCcCcc--c---CCCceEEEECC------CCeE
Q 011014          143 NIYIADTMNM---AIRKISDTGVT---TIAGGKW--SRGVG-HVDG-PSEDAK--F---SNDFDVVYVGS------SCSL  201 (495)
Q Consensus       143 nIYVAD~~N~---rIrk~d~~GV~---tiaGg~~--G~~~g-~~dG-~~~~a~--f---~~P~gVa~vd~------~G~L  201 (495)
                      +||++|.+..   .|.++.+.+-.   ...++..  +.... .... ......  +   ..|.++++...      .|.+
T Consensus       194 ~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~  273 (331)
T PF07995_consen  194 RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDL  273 (331)
T ss_dssp             EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEE
T ss_pred             cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcE
Confidence            9999997643   45555432200   0000000  00000 0000 000011  1   46778876533      6789


Q ss_pred             EEEECCCCeEEEEECCCCc-ee----eCCCCC-CcceEEEEecCcCeEEEEEccCCce
Q 011014          202 LVIDRGNQAIREIQLHDDD-CS----DNYDDT-FHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       202 yVaD~gN~rI~~~d~~g~~-~~----~~~~~g-~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      +|+|.+..+|..+.++... +.    .....+ .|.+|+++.  .+.|||++..+.+|
T Consensus       274 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p--DG~Lyv~~d~~G~i  329 (331)
T PF07995_consen  274 FVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP--DGALYVSDDSDGKI  329 (331)
T ss_dssp             EEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET--TSEEEEEE-TTTTE
T ss_pred             EEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC--CCeEEEEECCCCeE
Confidence            9999999999999987432 22    134444 689999997  68999999877766

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.33  E-value=0.031  Score=56.04  Aligned_cols=154  Identities=11%  Similarity=0.070  Sum_probs=80.5

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccc--c----ccCCCcCccccCCcceEEEcCC-CCEEEEECC-CCEE
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYY--G----HVDGRPRGARMNHPKGLAVDDR-GNIYIADTM-NMAI  154 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~--G----~~dG~~~~a~f~~P~GIAVD~d-GnIYVAD~~-N~rI  154 (495)
                      ..|.||++-.+|.+.+++-..+....+-........  .    ..-+.. ...=..-.|||.|+. +.+||+--. -.+|
T Consensus        65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l  143 (248)
T PF06977_consen   65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRL  143 (248)
T ss_dssp             SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred             CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence            479999999888888888656634333221110000  0    000000 000012469999996 457777322 2356


Q ss_pred             EEEcC--CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC----CC
Q 011014          155 RKISD--TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN----YD  226 (495)
Q Consensus       155 rk~d~--~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~----~~  226 (495)
                      ..++.  .+  +........         ......+..|.+|++.+..|.|||....+++|.+++.+|......    +.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~  214 (248)
T PF06977_consen  144 YEVNGFPGGFDLFVSDDQDL---------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGF  214 (248)
T ss_dssp             EEEESTT-SS--EEEE-HHH---------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTG
T ss_pred             EEEccccCccceeecccccc---------ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcc
Confidence            66653  22  222211000         012334567999998888999999999999999999999876641    11


Q ss_pred             CC------CcceEEEEecCcCeEEEEEc
Q 011014          227 DT------FHLGIFVLVAAAFFGYMLAL  248 (495)
Q Consensus       227 ~g------~P~GIAvd~~a~~~~yv~d~  248 (495)
                      .|      -|.|||+|.  .+++||+.=
T Consensus       215 ~gl~~~~~QpEGIa~d~--~G~LYIvsE  240 (248)
T PF06977_consen  215 HGLSKDIPQPEGIAFDP--DGNLYIVSE  240 (248)
T ss_dssp             GG-SS---SEEEEEE-T--T--EEEEET
T ss_pred             cCcccccCCccEEEECC--CCCEEEEcC
Confidence            12      289999997  679999875

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.32  E-value=0.0018  Score=64.82  Aligned_cols=119  Identities=14%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             CceEEEEcCC-CcEEEEECCCCeeEEEEcC---CCCccccccCC-CcCccccCCcceEEEcC-CCCEEEEECCCCEEEEE
Q 011014           84 EPFSVAVSPS-GELLVLDSENNSRPKLVAG---SPEGYYGHVDG-RPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKI  157 (495)
Q Consensus        84 ~P~GIAVd~d-G~LyVaDs~n~~ii~ivaG---s~~g~~G~~dG-~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~  157 (495)
                      .-.|||.|+. +.|||+--.+-..+.-+.+   ........... ......+..|.+|++|+ .|+|||....+++|..+
T Consensus       119 G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~  198 (248)
T PF06977_consen  119 GFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLEL  198 (248)
T ss_dssp             --EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEE
Confidence            4689999985 6688886544433333333   11111010000 00223567799999998 77899999999999999


Q ss_pred             cCCC--cEEE--ecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 011014          158 SDTG--VTTI--AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI  214 (495)
Q Consensus       158 d~~G--V~ti--aGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~  214 (495)
                      |.+|  +..+  ..+..|          ....|..|-||| +|++|+|||+.--| +..+|
T Consensus       199 d~~G~~~~~~~L~~g~~g----------l~~~~~QpEGIa-~d~~G~LYIvsEpN-lfy~f  247 (248)
T PF06977_consen  199 DRQGRVVSSLSLDRGFHG----------LSKDIPQPEGIA-FDPDGNLYIVSEPN-LFYRF  247 (248)
T ss_dssp             -TT--EEEEEE-STTGGG-----------SS---SEEEEE-E-TT--EEEEETTT-EEEEE
T ss_pred             CCCCCEEEEEEeCCcccC----------cccccCCccEEE-ECCCCCEEEEcCCc-eEEEe
Confidence            9999  3332  122111          123678999999 68999999999754 66666

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.11  E-value=0.13  Score=49.92  Aligned_cols=153  Identities=12%  Similarity=0.102  Sum_probs=89.9

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCCC
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG  161 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~G  161 (495)
                      ..|.+++++++|.++++.......+.++...........      ..-..|..++++++|. ||++-...++|+.+|...
T Consensus       115 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~  188 (300)
T TIGR03866       115 VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV------LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT  188 (300)
T ss_pred             CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE------EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence            458899999999977765544323333332110000000      0113577899999988 556655578899999543


Q ss_pred             ---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEE
Q 011014          162 ---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVL  236 (495)
Q Consensus       162 ---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd  236 (495)
                         +..+.....+    .      ...-..|.++++ +.++ .+|++...+++|.+++.....+.. ....+.+.++++.
T Consensus       189 ~~~~~~~~~~~~~----~------~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  257 (300)
T TIGR03866       189 RKVIKKITFEIPG----V------HPEAVQPVGIKL-TKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFT  257 (300)
T ss_pred             ceeeeeeeecccc----c------ccccCCccceEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEEC
Confidence               3333211100    0      001125777884 5555 568888888899999987655432 2233467888876


Q ss_pred             ecCcCeEEEEEccCCce
Q 011014          237 VAAAFFGYMLALLQRRV  253 (495)
Q Consensus       237 ~~a~~~~yv~d~~~~Rv  253 (495)
                      . .+..+|++....+.|
T Consensus       258 ~-~g~~l~~~~~~~~~i  273 (300)
T TIGR03866       258 P-DEKYLLTTNGVSNDV  273 (300)
T ss_pred             C-CCCEEEEEcCCCCeE
Confidence            5 344677776666666

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.09  E-value=0.0019  Score=54.87  Aligned_cols=66  Identities=17%  Similarity=0.198  Sum_probs=42.0

Q ss_pred             EEEEcCC-CcEEEEECCCC----------------e-eEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEE
Q 011014           87 SVAVSPS-GELLVLDSENN----------------S-RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA  147 (495)
Q Consensus        87 GIAVd~d-G~LyVaDs~n~----------------~-ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVA  147 (495)
                      +|+|+++ |.||++|+...                + .++.-..+.. .      ......|..|+|||+++|+. |+||
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~-~------~vl~~~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE-T------TVLLDGLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE-E------EEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe-E------EEehhCCCccCeEEEcCCCCEEEEE
Confidence            7899997 99999998544                1 1111111110 0      01123588999999999998 9999


Q ss_pred             ECCCCEEEEEcC
Q 011014          148 DTMNMAIRKISD  159 (495)
Q Consensus       148 D~~N~rIrk~d~  159 (495)
                      ++..+||.++--
T Consensus        75 Et~~~Ri~rywl   86 (89)
T PF03088_consen   75 ETGRYRILRYWL   86 (89)
T ss_dssp             EGGGTEEEEEES
T ss_pred             eccCceEEEEEE
Confidence            999999999853

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.07  E-value=0.086  Score=55.76  Aligned_cols=181  Identities=16%  Similarity=0.145  Sum_probs=95.2

Q ss_pred             eeeeeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCc-EEEEECCCCeeEEEEcC-C
Q 011014           36 VSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENNSRPKLVAG-S  113 (495)
Q Consensus        36 ~~~ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaG-s  113 (495)
                      +..+.....+.++.+|..+...+     ..+..|..            -+.++++.+||. +||+..++  .+.++.- +
T Consensus         7 l~~V~~~~~~~v~viD~~t~~~~-----~~i~~~~~------------~h~~~~~s~Dgr~~yv~~rdg--~vsviD~~~   67 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNKVV-----ARIPTGGA------------PHAGLKFSPDGRYLYVANRDG--TVSVIDLAT   67 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-SEE-----EEEE-STT------------EEEEEE-TT-SSEEEEEETTS--EEEEEETTS
T ss_pred             EEEEEecCCCEEEEEECCCCeEE-----EEEcCCCC------------ceeEEEecCCCCEEEEEcCCC--eEEEEECCc
Confidence            34455667788888888876544     11211111            144567778776 88887543  3444432 2


Q ss_pred             CCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCC
Q 011014          114 PEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSND  189 (495)
Q Consensus       114 ~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P  189 (495)
                      .. ......      .=..|.||++++||+ |||+....+.|.++|...   +.++..+....     +     ..-...
T Consensus        68 ~~-~v~~i~------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-----~-----~~~~Rv  130 (369)
T PF02239_consen   68 GK-VVATIK------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-----D-----GPESRV  130 (369)
T ss_dssp             SS-EEEEEE-------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T-----T-----TS---E
T ss_pred             cc-EEEEEe------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc-----c-----ccCCCc
Confidence            21 111000      013688999999998 999999999999999655   55554322110     0     011233


Q ss_pred             ceEEEECCCCeEEEEECCCCeEEEEECCCC-ce--eeCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          190 FDVVYVGSSCSLLVIDRGNQAIREIQLHDD-DC--SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       190 ~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~-~~--~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .+|...+.....+|+-...+.|..++.... ..  .......+|.+..++. .+..++++....+.+
T Consensus       131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i  196 (369)
T PF02239_consen  131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKI  196 (369)
T ss_dssp             EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEE
T ss_pred             eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccceeeeccccccee
Confidence            455533344445566677788888886553 22  1233344789998886 234556665555555

...

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.00  E-value=0.031  Score=54.39  Aligned_cols=134  Identities=10%  Similarity=0.106  Sum_probs=79.5

Q ss_pred             CCceEEEEcCCCcEE-EEECCCCeeEEEEcCC-CC--ccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEE
Q 011014           83 MEPFSVAVSPSGELL-VLDSENNSRPKLVAGS-PE--GYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKI  157 (495)
Q Consensus        83 ~~P~GIAVd~dG~Ly-VaDs~n~~ii~ivaGs-~~--g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~  157 (495)
                      ..|..++++++|..+ ++....+ .+.++.-. ..  ...-. ........-..|.+++++++|+ +|++...+++|.++
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~-~v~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~  234 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGG-TVSVIDVATRKVIKKITF-EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV  234 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCC-EEEEEEcCcceeeeeeee-cccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence            467889999998854 4433233 44554321 10  00000 0000001123578999999998 58888878899999


Q ss_pred             cCCC--c-EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceE
Q 011014          158 SDTG--V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGI  233 (495)
Q Consensus       158 d~~G--V-~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GI  233 (495)
                      |.+.  + ..+..   +               ..+.++++.+....||++....+.|.++++.+..+.. ......|.+|
T Consensus       235 d~~~~~~~~~~~~---~---------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  296 (300)
T TIGR03866       235 DAKTYEVLDYLLV---G---------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGV  296 (300)
T ss_pred             ECCCCcEEEEEEe---C---------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccccee
Confidence            9543  2 22211   0               1366777433344567777778899999999987643 3333568998


Q ss_pred             EEE
Q 011014          234 FVL  236 (495)
Q Consensus       234 Avd  236 (495)
                      ++.
T Consensus       297 ~~~  299 (300)
T TIGR03866       297 VVR  299 (300)
T ss_pred             EeC
Confidence            863

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.95  E-value=0.11  Score=53.08  Aligned_cols=153  Identities=14%  Similarity=0.170  Sum_probs=85.6

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEE--EcCCC----Cc---cccccCCCcCccccCCcceEEEcC-CCCEEEEECCC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKL--VAGSP----EG---YYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN  151 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~i--vaGs~----~g---~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N  151 (495)
                      ...|.+|+.-.+|...|+|-.......+  -+++.    ..   ..|..+.  .+..|   .|+|.|+ ++.+|||--.|
T Consensus       128 ~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k--~N~Gf---EGlA~d~~~~~l~~aKEr~  202 (316)
T COG3204         128 FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNK--KNKGF---EGLAWDPVDHRLFVAKERN  202 (316)
T ss_pred             cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCC--CCcCc---eeeecCCCCceEEEEEccC
Confidence            4689999998777777777655522222  11211    00   0111111  12223   4999999 55688875332


Q ss_pred             -CEEEEEc--CCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee----C
Q 011014          152 -MAIRKIS--DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD----N  224 (495)
Q Consensus       152 -~rIrk~d--~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~----~  224 (495)
                       -+|.+++  ++.++.-+...        ........+..-.++.+....++|+|.--..++|.+++.+|+.+..    .
T Consensus       203 P~~I~~~~~~~~~l~~~~~~~--------~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~  274 (316)
T COG3204         203 PIGIFEVTQSPSSLSVHASLD--------PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK  274 (316)
T ss_pred             CcEEEEEecCCcccccccccC--------cccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc
Confidence             3455554  11121111100        0001112234445666555678899988889999999999986542    2


Q ss_pred             CCCCC------cceEEEEecCcCeEEEEEcc
Q 011014          225 YDDTF------HLGIFVLVAAAFFGYMLALL  249 (495)
Q Consensus       225 ~~~g~------P~GIAvd~~a~~~~yv~d~~  249 (495)
                      +..|+      +.|||+|.  .+++||+.=-
T Consensus       275 g~~gL~~dipqaEGiamDd--~g~lYIvSEP  303 (316)
T COG3204         275 GNHGLSSDIPQAEGIAMDD--DGNLYIVSEP  303 (316)
T ss_pred             CCCCCcccCCCcceeEECC--CCCEEEEecC
Confidence            23332      78999997  7899988643

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.23  Score=51.77  Aligned_cols=176  Identities=17%  Similarity=0.157  Sum_probs=102.6

Q ss_pred             CCCCceEEEEcCCCc-EEEEECCCCeeEEEEc----CCCC---ccccccCCCcCccc--cCCcceEEEcCCCC-EEEEEC
Q 011014           81 FGMEPFSVAVSPSGE-LLVLDSENNSRPKLVA----GSPE---GYYGHVDGRPRGAR--MNHPKGLAVDDRGN-IYIADT  149 (495)
Q Consensus        81 ~~~~P~GIAVd~dG~-LyVaDs~n~~ii~iva----Gs~~---g~~G~~dG~~~~a~--f~~P~GIAVD~dGn-IYVAD~  149 (495)
                      .+..|+.|++|++|. ||+|.+... .+.+..    |...   +..-+ .|.....+  =.+++..-++++|+ |+|+|-
T Consensus        87 ~g~~p~yvsvd~~g~~vf~AnY~~g-~v~v~p~~~dG~l~~~v~~~~h-~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL  164 (346)
T COG2706          87 PGSPPCYVSVDEDGRFVFVANYHSG-SVSVYPLQADGSLQPVVQVVKH-TGSGPHERQESPHVHSANFTPDGRYLVVPDL  164 (346)
T ss_pred             CCCCCeEEEECCCCCEEEEEEccCc-eEEEEEcccCCccccceeeeec-CCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence            346679999999996 666666554 444432    3321   11112 11111112  33467888999995 999999


Q ss_pred             CCCEEEEEc-CCCcEEEec---CcccCCC-------------------------CCCC--C--------CCcCccc---C
Q 011014          150 MNMAIRKIS-DTGVTTIAG---GKWSRGV-------------------------GHVD--G--------PSEDAKF---S  187 (495)
Q Consensus       150 ~N~rIrk~d-~~GV~tiaG---g~~G~~~-------------------------g~~d--G--------~~~~a~f---~  187 (495)
                      +..||..|+ .+|..+.+.   -+.|.++                         .+.+  |        ......|   +
T Consensus       165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~  244 (346)
T COG2706         165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN  244 (346)
T ss_pred             CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence            999999998 566322221   1111111                         0111  1        1112223   3


Q ss_pred             CCceEEEECCCC-eEEEEECCCCeEEEEEC--CCCceee----CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCC
Q 011014          188 NDFDVVYVGSSC-SLLVIDRGNQAIREIQL--HDDDCSD----NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       188 ~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~--~g~~~~~----~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                      +-..|.+ ..+| .||++|++-+.|..|..  ++..+..    ..+.-+|++..++.+ +.+++++.-..+.|  .+|..
T Consensus       245 ~~aaIhi-s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~-g~~Liaa~q~sd~i--~vf~~  320 (346)
T COG2706         245 WAAAIHI-SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS-GRFLIAANQKSDNI--TVFER  320 (346)
T ss_pred             ceeEEEE-CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC-CCEEEEEccCCCcE--EEEEE
Confidence            3345663 4555 68999999998886664  4444332    344446999999973 56788888777777  45554


Q ss_pred             CC
Q 011014          261 DD  262 (495)
Q Consensus       261 ~~  262 (495)
                      +.
T Consensus       321 d~  322 (346)
T COG2706         321 DK  322 (346)
T ss_pred             cC
Confidence            43

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=96.84  E-value=0.04  Score=56.25  Aligned_cols=63  Identities=11%  Similarity=0.039  Sum_probs=43.0

Q ss_pred             ceEEEECCCCeEEEEECCCCeEEEEECCCCc-------eeeCCC-CCCcceEEEEecCcCeEEEEEccCCce
Q 011014          190 FDVVYVGSSCSLLVIDRGNQAIREIQLHDDD-------CSDNYD-DTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       190 ~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~-------~~~~~~-~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .+++ +|++|+||+++..++.|.+.++++..       +..... .-+|.+++++....+.+|++.-.-+|+
T Consensus       189 ~g~~-~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~  259 (287)
T PF03022_consen  189 DGMA-IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRF  259 (287)
T ss_dssp             CEEE-EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SS
T ss_pred             ceEE-ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHh
Confidence            4555 78999999999999999999999822       222333 568999999963357899988544443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.77  E-value=0.35  Score=49.89  Aligned_cols=124  Identities=17%  Similarity=0.171  Sum_probs=83.1

Q ss_pred             CCCceEEEEcC---CCcEEEEECCCCeeEEEEcCCCCcc--ccccCCCcCccccCCcceEEEcCCCCEEEE---------
Q 011014           82 GMEPFSVAVSP---SGELLVLDSENNSRPKLVAGSPEGY--YGHVDGRPRGARMNHPKGLAVDDRGNIYIA---------  147 (495)
Q Consensus        82 ~~~P~GIAVd~---dG~LyVaDs~n~~ii~ivaGs~~g~--~G~~dG~~~~a~f~~P~GIAVD~dGnIYVA---------  147 (495)
                      +.--.|+|+..   ...||.+|..+. +|.++.++..-.  .|....+...+. ..|.+|..- .|+|||+         
T Consensus       137 gavYkGLAi~~~~~~~~LYaadF~~g-~IDVFd~~f~~~~~~g~F~DP~iPag-yAPFnIqni-g~~lyVtYA~qd~~~~  213 (336)
T TIGR03118       137 GNVYKGLAVGPTGGGDYLYAANFRQG-RIDVFKGSFRPPPLPGSFIDPALPAG-YAPFNVQNL-GGTLYVTYAQQDADRN  213 (336)
T ss_pred             cceeeeeEEeecCCCceEEEeccCCC-ceEEecCccccccCCCCccCCCCCCC-CCCcceEEE-CCeEEEEEEecCCccc
Confidence            34456788764   356999999766 788887765311  111111111222 357888665 5789996         


Q ss_pred             ----ECCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEEC-----CCCeEEEEECCCCeEEEEEC
Q 011014          148 ----DTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG-----SSCSLLVIDRGNQAIREIQL  216 (495)
Q Consensus       148 ----D~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd-----~~G~LyVaD~gN~rI~~~d~  216 (495)
                          ..+..-|-+||.+|  +..++.               ...|+.|++|++.+     -.|.|+|...+.++|-.||+
T Consensus       214 d~v~G~G~G~VdvFd~~G~l~~r~as---------------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~  278 (336)
T TIGR03118       214 DEVAGAGLGYVNVFTLNGQLLRRVAS---------------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP  278 (336)
T ss_pred             ccccCCCcceEEEEcCCCcEEEEecc---------------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence                13456899999999  555633               23699999999532     25789999999999999998


Q ss_pred             C-CCceee
Q 011014          217 H-DDDCSD  223 (495)
Q Consensus       217 ~-g~~~~~  223 (495)
                      . |..+..
T Consensus       279 ~sG~~~g~  286 (336)
T TIGR03118       279 QSGAQLGQ  286 (336)
T ss_pred             CCCceeee
Confidence            6 555543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.74  E-value=0.04  Score=54.79  Aligned_cols=83  Identities=16%  Similarity=0.207  Sum_probs=58.8

Q ss_pred             ccCCcceEEEcCCCC-EEEEECCCCEEEEEc---CCC-c---EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe
Q 011014          129 RMNHPKGLAVDDRGN-IYIADTMNMAIRKIS---DTG-V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS  200 (495)
Q Consensus       129 ~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d---~~G-V---~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~  200 (495)
                      ++.-|.||+.|.+-. .|+.|+.|..|..++   +.| +   ..+.-.....          .-.--.|-|++ +|.+|+
T Consensus       156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~----------~~e~~~PDGm~-ID~eG~  224 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ----------PFESLEPDGMT-IDTEGN  224 (310)
T ss_pred             hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC----------CcCCCCCCcce-EccCCc
Confidence            455688999998654 999999999996666   444 1   2222211111          00113688898 689999


Q ss_pred             EEEEECCCCeEEEEECCCCcee
Q 011014          201 LLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       201 LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                      |||+-.+..+|+++++....+.
T Consensus       225 L~Va~~ng~~V~~~dp~tGK~L  246 (310)
T KOG4499|consen  225 LYVATFNGGTVQKVDPTTGKIL  246 (310)
T ss_pred             EEEEEecCcEEEEECCCCCcEE
Confidence            9999999999999999886543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.67  E-value=0.081  Score=54.44  Aligned_cols=163  Identities=12%  Similarity=0.039  Sum_probs=85.3

Q ss_pred             CCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccc-------cccCCCcCccccCCcceEEEcCCCCEEEEECCCC
Q 011014           80 KFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYY-------GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM  152 (495)
Q Consensus        80 ~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~-------G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~  152 (495)
                      ..+.+|+||++.|.|-+||+|.... ...+..+.+....       ....+......-..|+||.+......-|+-....
T Consensus        20 p~L~N~WGia~~p~~~~WVadngT~-~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~   98 (336)
T TIGR03118        20 PGLRNAWGLSYRPGGPFWVANTGTG-TATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT   98 (336)
T ss_pred             ccccccceeEecCCCCEEEecCCcc-eEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence            3456899999999999999999887 6666666521111       1111111122335699999986544334332211


Q ss_pred             --EEEEEc-CCC-cEEEecCcccC----C-CCCCCCCCcCcccCCCceEEEE--CCCCeEEEEECCCCeEEEEECCCCce
Q 011014          153 --AIRKIS-DTG-VTTIAGGKWSR----G-VGHVDGPSEDAKFSNDFDVVYV--GSSCSLLVIDRGNQAIREIQLHDDDC  221 (495)
Q Consensus       153 --rIrk~d-~~G-V~tiaGg~~G~----~-~g~~dG~~~~a~f~~P~gVa~v--d~~G~LyVaD~gN~rI~~~d~~g~~~  221 (495)
                        ....|. .+| |+-....-.-.    . .-.+++.  .....  .|+|+.  .....||.+|..|++|.+||..-..+
T Consensus        99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~--~gavY--kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~  174 (336)
T TIGR03118        99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ--QGNVY--KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP  174 (336)
T ss_pred             cceeEEEEeCCceEEeecCcCCcccccccEEEEccCC--Cccee--eeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence              111222 333 22221100000    0 0000000  00011  244432  22568999999999999998666543


Q ss_pred             ee---CCCC----C-CcceEEEEecCcCeEEEEEccC
Q 011014          222 SD---NYDD----T-FHLGIFVLVAAAFFGYMLALLQ  250 (495)
Q Consensus       222 ~~---~~~~----g-~P~GIAvd~~a~~~~yv~d~~~  250 (495)
                      ..   ....    | -|.+|...   +..+||+=-.+
T Consensus       175 ~~~g~F~DP~iPagyAPFnIqni---g~~lyVtYA~q  208 (336)
T TIGR03118       175 PLPGSFIDPALPAGYAPFNVQNL---GGTLYVTYAQQ  208 (336)
T ss_pred             cCCCCccCCCCCCCCCCcceEEE---CCeEEEEEEec
Confidence            32   1112    2 28888777   56788876554

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.46  E-value=0.24  Score=51.59  Aligned_cols=164  Identities=16%  Similarity=0.220  Sum_probs=99.5

Q ss_pred             CCceEEEEcCCC-cEEEEECC--CCeeEEE-EcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEE
Q 011014           83 MEPFSVAVSPSG-ELLVLDSE--NNSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKI  157 (495)
Q Consensus        83 ~~P~GIAVd~dG-~LyVaDs~--n~~ii~i-vaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~  157 (495)
                      .+|.-|++++++ .||+....  ..++... +++.. |..-..+-  ....-..|..|++|++|. ||+|....+.|.++
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~--~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNR--QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeec--cccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            489999999987 58888755  2222221 12110 11000000  011224579999999995 88998888887776


Q ss_pred             c--CCC-c----EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCceee-----C
Q 011014          158 S--DTG-V----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDCSD-----N  224 (495)
Q Consensus       158 d--~~G-V----~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~~~~-----~  224 (495)
                      -  .+| +    .++....        .|+.....=..++..- +++++ .|+++|-+..||..|+++...+..     .
T Consensus       117 p~~~dG~l~~~v~~~~h~g--------~~p~~rQ~~~h~H~a~-~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v  187 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTG--------SGPHERQESPHVHSAN-FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV  187 (346)
T ss_pred             EcccCCccccceeeeecCC--------CCCCccccCCccceee-eCCCCCEEEEeecCCceEEEEEcccCcccccccccc
Confidence            5  667 2    3332211        1122222223355555 56666 789999999999999998544431     2


Q ss_pred             CCCCCcceEEEEecCcCeEEEEEccCCceEEEeeC
Q 011014          225 YDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       225 ~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                      ....-|+=|++-. .+.+.|+..=+++.|-..-.+
T Consensus       188 ~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         188 KPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             CCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEc
Confidence            2222488888886 456899999999999433333

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.05  E-value=1.9  Score=43.75  Aligned_cols=146  Identities=14%  Similarity=0.060  Sum_probs=84.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--  161 (495)
                      .-.||++- ++.||..-..++.....-..+. ...+...-      -..-+|||.|. ..||++|. +.+|+.+|+..  
T Consensus        91 FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl-~~~~~~~y------~~EGWGLt~dg-~~Li~SDG-S~~L~~~dP~~f~  160 (264)
T PF05096_consen   91 FGEGITIL-GDKLYQLTWKEGTGFVYDPNTL-KKIGTFPY------PGEGWGLTSDG-KRLIMSDG-SSRLYFLDPETFK  160 (264)
T ss_dssp             -EEEEEEE-TTEEEEEESSSSEEEEEETTTT-EEEEEEE-------SSS--EEEECS-SCEEEE-S-SSEEEEE-TTT-S
T ss_pred             cceeEEEE-CCEEEEEEecCCeEEEEccccc-eEEEEEec------CCcceEEEcCC-CEEEEECC-ccceEEECCcccc
Confidence            46788887 5688888887773333322222 11111000      01457999774 47999996 89999999765  


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee------------CC---
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD------------NY---  225 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~------------~~---  225 (495)
                       +.++.-...|.            ....=+.+-++  +|.||---+..++|.+||+....+..            ..   
T Consensus       161 ~~~~i~V~~~g~------------pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~  226 (264)
T PF05096_consen  161 EVRTIQVTDNGR------------PVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSR  226 (264)
T ss_dssp             EEEEEE-EETTE------------E---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST
T ss_pred             eEEEEEEEECCE------------ECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccc
Confidence             33332211110            11222344444  67999999999999999999988742            01   


Q ss_pred             --CCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          226 --DDTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       226 --~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                        ....-.|||.|.. ...+|||.-+=.++-
T Consensus       227 ~~~~dVLNGIAyd~~-~~~l~vTGK~Wp~ly  256 (264)
T PF05096_consen  227 QPDDDVLNGIAYDPE-TDRLFVTGKLWPKLY  256 (264)
T ss_dssp             --TTS-EEEEEEETT-TTEEEEEETT-SEEE
T ss_pred             cccCCeeEeEeEeCC-CCEEEEEeCCCCceE
Confidence              1235789999974 457899986655543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.97  E-value=0.2  Score=51.29  Aligned_cols=123  Identities=13%  Similarity=0.171  Sum_probs=78.9

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCc---CccccCCcceEEEcC-CCCEEEEECCCCEEEEE
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRP---RGARMNHPKGLAVDD-RGNIYIADTMNMAIRKI  157 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~---~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~  157 (495)
                      ..-.|+|.|+ ++.+||+--.|-..+..+.++............   ..-.+..-.|+.+|+ +|.|+|---..+++..+
T Consensus       181 ~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Ev  260 (316)
T COG3204         181 KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEV  260 (316)
T ss_pred             cCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEE
Confidence            3457999998 566899887776555555555433332211111   112255667899997 77899988889999999


Q ss_pred             cCCC--cEE--EecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 011014          158 SDTG--VTT--IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  217 (495)
Q Consensus       158 d~~G--V~t--iaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~  217 (495)
                      |.+|  +..  +.+|..|          .....-.+.||+ .|++|+|||+..- +.-.+|.++
T Consensus       261 d~~G~~~~~lsL~~g~~g----------L~~dipqaEGia-mDd~g~lYIvSEP-nlfy~F~~~  312 (316)
T COG3204         261 DLSGEVIELLSLTKGNHG----------LSSDIPQAEGIA-MDDDGNLYIVSEP-NLFYRFTPQ  312 (316)
T ss_pred             ecCCCeeeeEEeccCCCC----------CcccCCCcceeE-ECCCCCEEEEecC-CcceecccC
Confidence            9888  222  2233222          123456788999 7999999998754 455566544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.77  E-value=0.43  Score=50.33  Aligned_cols=81  Identities=14%  Similarity=0.075  Sum_probs=56.6

Q ss_pred             CcceEEEcCCCC-EEEEEC---------CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCC
Q 011014          132 HPKGLAVDDRGN-IYIADT---------MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS  198 (495)
Q Consensus       132 ~P~GIAVD~dGn-IYVAD~---------~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~  198 (495)
                      .|.|+ +.+||. ||||.+         ....|.+||...   +..+.-+..          ........|..+++.++.
T Consensus        48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~----------p~~~~~~~~~~~~ls~dg  116 (352)
T TIGR02658        48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG----------PRFLVGTYPWMTSLTPDN  116 (352)
T ss_pred             CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC----------chhhccCccceEEECCCC
Confidence            78897 888876 999999         889999999655   333321110          011224567778844444


Q ss_pred             CeEEEEECC-CCeEEEEECCCCceee
Q 011014          199 CSLLVIDRG-NQAIREIQLHDDDCSD  223 (495)
Q Consensus       199 G~LyVaD~g-N~rI~~~d~~g~~~~~  223 (495)
                      ..|||++.. .+.|-++|+....+..
T Consensus       117 k~l~V~n~~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658       117 KTLLFYQFSPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CEEEEecCCCCCEEEEEECCCCcEEE
Confidence            479999976 9999999999876643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.70  E-value=0.084  Score=52.60  Aligned_cols=76  Identities=12%  Similarity=0.052  Sum_probs=57.3

Q ss_pred             ccCCCceEEEECCCCeEEEEECCCCeEEEEE--CCCCceee-----------CCCCCCcceEEEEecCcCeEEEEEccCC
Q 011014          185 KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ--LHDDDCSD-----------NYDDTFHLGIFVLVAAAFFGYMLALLQR  251 (495)
Q Consensus       185 ~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d--~~g~~~~~-----------~~~~g~P~GIAvd~~a~~~~yv~d~~~~  251 (495)
                      ++.-|++|+...+....|+.|+.|..|..++  ..+..+..           .-+.-.|.|+++|.  .+++||+.+...
T Consensus       156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~--eG~L~Va~~ng~  233 (310)
T KOG4499|consen  156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT--EGNLYVATFNGG  233 (310)
T ss_pred             hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc--CCcEEEEEecCc
Confidence            3456788887666778999999999996555  65544421           12334699999997  889999999999


Q ss_pred             ceEEEeeCCCC
Q 011014          252 RVQAMFSSKDD  262 (495)
Q Consensus       252 Rv~~~~~s~~~  262 (495)
                      +|+++..+...
T Consensus       234 ~V~~~dp~tGK  244 (310)
T KOG4499|consen  234 TVQKVDPTTGK  244 (310)
T ss_pred             EEEEECCCCCc
Confidence            99877766543

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=95.63  E-value=0.76  Score=47.73  Aligned_cols=181  Identities=13%  Similarity=0.158  Sum_probs=94.1

Q ss_pred             eeeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCC--
Q 011014           38 NVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPE--  115 (495)
Q Consensus        38 ~ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~--  115 (495)
                      .++.+...+||.+....+....+..--.++.-|.......+.  ...-++|++ .++.+|+..+.-+ ++-++.....  
T Consensus        60 ~l~~~t~~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TG--didiHdia~-~~~~l~fVNT~fS-CLatl~~~~SF~  135 (335)
T TIGR03032        60 SLTLGTRYQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTG--DIDAHDLAL-GAGRLLFVNTLFS-CLATVSPDYSFV  135 (335)
T ss_pred             eEEEEEcceeEEcccccccccccccCCCCCeEEeeeeeeecc--Ccchhheee-cCCcEEEEECcce-eEEEECCCCccc
Confidence            355677789998833333322222211222222222211111  125678899 5788999888666 5555543321  


Q ss_pred             --ccccccCCCcCccccCCcceEEEcCCCCEEEEECCCC---EEEEEc-CCC--cEEEecCcccCCCCCCCCCCcCcccC
Q 011014          116 --GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM---AIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFS  187 (495)
Q Consensus       116 --g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~---rIrk~d-~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~  187 (495)
                        -+.-+...-.. .-=++-+|+|+++..--||+--...   .=++=. .+|  +--+..+.           .-..-|.
T Consensus       136 P~WkPpFIs~la~-eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~e-----------vl~~GLs  203 (335)
T TIGR03032       136 PLWKPPFISKLAP-EDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGE-----------VVASGLS  203 (335)
T ss_pred             cccCCccccccCc-cCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCC-----------EEEcCcc
Confidence              11111111111 1124556999985444887632210   000000 111  11111000           0001144


Q ss_pred             CCceEEEECCCCeEEEEECCCCeEEEEECC-CCceeeCCCCCCcceEEEE
Q 011014          188 NDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCSDNYDDTFHLGIFVL  236 (495)
Q Consensus       188 ~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~-g~~~~~~~~~g~P~GIAvd  236 (495)
                      .|.+--.  -+|.|||+|.+.+.|..++++ |.......-.|+|.|++..
T Consensus       204 mPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~  251 (335)
T TIGR03032       204 MPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA  251 (335)
T ss_pred             CCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee
Confidence            5555443  468999999999999999998 6655556677899999999

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=95.32  E-value=0.7  Score=49.53  Aligned_cols=164  Identities=14%  Similarity=0.094  Sum_probs=94.8

Q ss_pred             ceEEEEcCCCcEEEEECCC-------C------eeEEEEcCCCCcccc-ccCCC---cCccccCCcceEEEcCC-CCEEE
Q 011014           85 PFSVAVSPSGELLVLDSEN-------N------SRPKLVAGSPEGYYG-HVDGR---PRGARMNHPKGLAVDDR-GNIYI  146 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n-------~------~ii~ivaGs~~g~~G-~~dG~---~~~a~f~~P~GIAVD~d-GnIYV  146 (495)
                      -..|++++||.|||+-..+       +      .++++-.   .+... +.++.   .-...+.+|.|+++++. |.||+
T Consensus       179 g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~---a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~  255 (399)
T COG2133         179 GGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDR---AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT  255 (399)
T ss_pred             cccEEECCCCcEEEEeCCCCCcccccCccccccceeeecc---CcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence            3569999999999986555       1      1122210   01100 00111   11335789999999995 99999


Q ss_pred             EECCCCEEEEEcCCCcEEEe-cCcccCC--------CC--CCCCCCcCccc----------CCCceEEEECCC------C
Q 011014          147 ADTMNMAIRKISDTGVTTIA-GGKWSRG--------VG--HVDGPSEDAKF----------SNDFDVVYVGSS------C  199 (495)
Q Consensus       147 AD~~N~rIrk~d~~GV~tia-Gg~~G~~--------~g--~~dG~~~~a~f----------~~P~gVa~vd~~------G  199 (495)
                      +|.+...+  +-.+.+..+. |+..|-.        .+  ..+ +...+.+          ..|.++++-+.+      +
T Consensus       256 ~e~g~d~~--~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~-~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~  332 (399)
T COG2133         256 TEHGPDAL--RGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPD-GTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRG  332 (399)
T ss_pred             EecCCCcc--cCcccccccccCCccCCceeccCcccCccccCC-CcccccccCCceeeccccccceeEEecCCcCccccC
Confidence            99887555  2222222221 1111100        00  001 1111111          345788866554      7


Q ss_pred             eEEEEECCCCeEEEEECCCC---ceee---CCCCCCcceEEEEecCcCeEEEEEcc-CCceEEE
Q 011014          200 SLLVIDRGNQAIREIQLHDD---DCSD---NYDDTFHLGIFVLVAAAFFGYMLALL-QRRVQAM  256 (495)
Q Consensus       200 ~LyVaD~gN~rI~~~d~~g~---~~~~---~~~~g~P~GIAvd~~a~~~~yv~d~~-~~Rv~~~  256 (495)
                      .+||+-.+.-.+...+++++   ....   ....|.|.++++..  .+.+||++-. +.+|-++
T Consensus       333 ~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~--DGallv~~D~~~g~i~Rv  394 (399)
T COG2133         333 DLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAP--DGALLVLTDQGDGRILRV  394 (399)
T ss_pred             cEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECC--CCeEEEeecCCCCeEEEe
Confidence            89999998888888999997   2221   22447999999997  6778888777 5466444

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.11  E-value=0.24  Score=53.89  Aligned_cols=111  Identities=8%  Similarity=-0.053  Sum_probs=67.3

Q ss_pred             ccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC-c-EEEecCcccCCCCCCCCCCcCcccCCCceEEEE------CCCCe
Q 011014          129 RMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV------GSSCS  200 (495)
Q Consensus       129 ~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-V-~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v------d~~G~  200 (495)
                      .|..|++|++.++|+|||++...++|++++.++ . ..+.+... .        ........+.+|++.      ..++.
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~-v--------~~~~ge~GLlglal~PdF~~~~~n~~   98 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPE-I--------VNDAQHNGLLGLALHPDFMQEKGNPY   98 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCc-e--------eccCCCCceeeEEECCCccccCCCcE
Confidence            478999999999999999998889999998654 2 33322110 0        001123466788843      23457


Q ss_pred             EEEEEC---------CCCeEEEEECCCC--ce-----ee--CCCCC--CcceEEEEecCcCeEEEEEccC
Q 011014          201 LLVIDR---------GNQAIREIQLHDD--DC-----SD--NYDDT--FHLGIFVLVAAAFFGYMLALLQ  250 (495)
Q Consensus       201 LyVaD~---------gN~rI~~~d~~g~--~~-----~~--~~~~g--~P~GIAvd~~a~~~~yv~d~~~  250 (495)
                      |||+-+         ...+|.++.++..  .+     ..  ....+  .-..|+++.  .+.|||+-...
T Consensus        99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP--DG~LYVs~GD~  166 (454)
T TIGR03606        99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP--DGKIYYTIGEQ  166 (454)
T ss_pred             EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC--CCcEEEEECCC
Confidence            999842         2568988887632  11     11  11111  233455554  55788877665

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=94.72  E-value=0.31  Score=53.99  Aligned_cols=81  Identities=21%  Similarity=0.412  Sum_probs=53.8

Q ss_pred             ccccCCcceEEEcC-CCCEEEEECCCC-------------------EEEEEcCCC---------cEE-EecCcccCCCCC
Q 011014          127 GARMNHPKGLAVDD-RGNIYIADTMNM-------------------AIRKISDTG---------VTT-IAGGKWSRGVGH  176 (495)
Q Consensus       127 ~a~f~~P~GIAVD~-dGnIYVAD~~N~-------------------rIrk~d~~G---------V~t-iaGg~~G~~~g~  176 (495)
                      ...|.+|.||++++ +|.|||+-+.|.                   +|.++..++         ..+ +.++........
T Consensus       346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~  425 (524)
T PF05787_consen  346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN  425 (524)
T ss_pred             cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence            45899999999998 688999988776                   788888543         111 112211100011


Q ss_pred             CCCCCcCcccCCCceEEEECCCCeEEEEECCC
Q 011014          177 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  208 (495)
Q Consensus       177 ~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN  208 (495)
                      .........|+.|-.|+ ++.+|+|||+.-++
T Consensus       426 ~~~~~~~~~f~sPDNL~-~d~~G~LwI~eD~~  456 (524)
T PF05787_consen  426 GSNKCDDNGFASPDNLA-FDPDGNLWIQEDGG  456 (524)
T ss_pred             ccCcccCCCcCCCCceE-ECCCCCEEEEeCCC
Confidence            12234456799999999 68899999886433

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=94.53  E-value=0.33  Score=53.87  Aligned_cols=81  Identities=19%  Similarity=0.249  Sum_probs=49.8

Q ss_pred             CCCCceEEEEcC-CCcEEEEECCCC-------------------eeEEEEcCCC-------C----ccccc-------cC
Q 011014           81 FGMEPFSVAVSP-SGELLVLDSENN-------------------SRPKLVAGSP-------E----GYYGH-------VD  122 (495)
Q Consensus        81 ~~~~P~GIAVd~-dG~LyVaDs~n~-------------------~ii~ivaGs~-------~----g~~G~-------~d  122 (495)
                      .+.+|.+|++++ +|.|||+-+.+.                   .++++.....       .    -..|.       ..
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            457999999998 689999987665                   2333321110       0    00010       01


Q ss_pred             CCcCccccCCcceEEEcCCCCEEEEECC-CCE--EEEEcCCC
Q 011014          123 GRPRGARMNHPKGLAVDDRGNIYIADTM-NMA--IRKISDTG  161 (495)
Q Consensus       123 G~~~~a~f~~P~GIAVD~dGnIYVAD~~-N~r--Irk~d~~G  161 (495)
                      .......|..|-+|++|++|+|||+.-. ++.  |.-...+|
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G  469 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDG  469 (524)
T ss_pred             CcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccC
Confidence            1123567999999999999999998543 332  34444555

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=94.41  E-value=0.59  Score=49.34  Aligned_cols=73  Identities=14%  Similarity=0.186  Sum_probs=50.9

Q ss_pred             Ccce---EEEcCCCC-EEEE-EC--------CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEE
Q 011014          132 HPKG---LAVDDRGN-IYIA-DT--------MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV  195 (495)
Q Consensus       132 ~P~G---IAVD~dGn-IYVA-D~--------~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v  195 (495)
                      +|.|   ||++++|+ |||+ ..        ..+.|.+||...   +..+.-|                  ..|.+|++.
T Consensus       246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG------------------~~~~~iavS  307 (352)
T TIGR02658       246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG------------------HEIDSINVS  307 (352)
T ss_pred             CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC------------------CceeeEEEC
Confidence            5666   99998754 9995 32        236999999554   4444221                  267888854


Q ss_pred             CCCC-eEEEEECCCCeEEEEECCCCcee
Q 011014          196 GSSC-SLLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       196 d~~G-~LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                      .+.. .||+++..++.|.+||.......
T Consensus       308 ~Dgkp~lyvtn~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       308 QDAKPLLYALSTGDKTLYIFDAETGKEL  335 (352)
T ss_pred             CCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence            4444 68889989999999998876543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.99  E-value=0.11  Score=36.31  Aligned_cols=33  Identities=36%  Similarity=0.442  Sum_probs=28.7

Q ss_pred             ccCCcceEEEcCC-CCEEEEECCCCEEEEEcCCC
Q 011014          129 RMNHPKGLAVDDR-GNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus       129 ~f~~P~GIAVD~d-GnIYVAD~~N~rIrk~d~~G  161 (495)
                      .+..|.|||+|.. +.||.+|...+.|.+.+-+|
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            5678999999995 56999999999999988766

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.72  E-value=11  Score=40.20  Aligned_cols=114  Identities=15%  Similarity=0.198  Sum_probs=65.2

Q ss_pred             ccCCcceEEEc---CCCCEEE--EECCCCEEEEEc----CCC-c-----EEEecCcccCCCCCCCCCCcCcccCCCceEE
Q 011014          129 RMNHPKGLAVD---DRGNIYI--ADTMNMAIRKIS----DTG-V-----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV  193 (495)
Q Consensus       129 ~f~~P~GIAVD---~dGnIYV--AD~~N~rIrk~d----~~G-V-----~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa  193 (495)
                      .+..|.|+|+-   .+|.+|+  .+. ++++..+-    .+| +     ..+.                  .-+.+.+++
T Consensus       154 ~~~e~yGlcly~~~~~g~~ya~v~~k-~G~~~Qy~L~~~~~g~v~~~lVR~f~------------------~~sQ~EGCV  214 (381)
T PF02333_consen  154 DLSEPYGLCLYRSPSTGALYAFVNGK-DGRVEQYELTDDGDGKVSATLVREFK------------------VGSQPEGCV  214 (381)
T ss_dssp             SSSSEEEEEEEE-TTT--EEEEEEET-TSEEEEEEEEE-TTSSEEEEEEEEEE-------------------SS-EEEEE
T ss_pred             ccccceeeEEeecCCCCcEEEEEecC-CceEEEEEEEeCCCCcEeeEEEEEec------------------CCCcceEEE
Confidence            46678899984   2566554  443 45555443    344 2     2221                  113678888


Q ss_pred             EECCCCeEEEEECCCCeEEEEECCCCc------eeeCCCCCC---cceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          194 YVGSSCSLLVIDRGNQAIREIQLHDDD------CSDNYDDTF---HLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       194 ~vd~~G~LyVaD~gN~rI~~~d~~g~~------~~~~~~~g~---P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      ++|..|.|||++. +.-|++++.+-+.      +....+.++   ..||++-.+..+.+|+..+.|..-.-.++..+.
T Consensus       215 VDDe~g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  215 VDDETGRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EETTTTEEEEEET-TTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EecccCCEEEecC-ccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            8899999999996 4799999987432      112233333   679999765555555544444443336666554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=93.70  E-value=10  Score=41.80  Aligned_cols=160  Identities=19%  Similarity=0.177  Sum_probs=95.0

Q ss_pred             ecCCceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEE
Q 011014           66 FEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIY  145 (495)
Q Consensus        66 ~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIY  145 (495)
                      ...|.+....+.|....+.-.+++.+..|+|+....++.  ++++.....+.....-    ...=.+|.|+|+.++|.+.
T Consensus       347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~--l~~~~~~~~~~t~~~~----~~lg~QP~~lav~~d~~~a  420 (603)
T KOG0318|consen  347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT--LRVISLKDNGYTKSEV----VKLGSQPKGLAVLSDGGTA  420 (603)
T ss_pred             EecCCccccccccccccceEEEEeecCCCcEEEEecCCe--EEEEecccCcccccce----eecCCCceeEEEcCCCCEE
Confidence            333333333333444445677899988899999988887  3333221112211100    0112579999999998766


Q ss_pred             EEECCCCEEEEEc-CCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee--
Q 011014          146 IADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS--  222 (495)
Q Consensus       146 VAD~~N~rIrk~d-~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~--  222 (495)
                      |.-... .|..+. ..+++++--+                  ..|.++| +..+++....--....|+.+++.|....  
T Consensus       421 vv~~~~-~iv~l~~~~~~~~~~~~------------------y~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~~l~ee  480 (603)
T KOG0318|consen  421 VVACIS-DIVLLQDQTKVSSIPIG------------------YESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGDELKEE  480 (603)
T ss_pred             EEEecC-cEEEEecCCcceeeccc------------------cccceEE-EcCCCCEEEEecccceEEEEEecCCcccce
Confidence            554433 344444 5556666211                  2566777 6778877777766778999999996632  


Q ss_pred             --eCCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          223 --DNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       223 --~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                        ...-.+-+..|+...   ..-|.++...+|..
T Consensus       481 ~~~~~h~a~iT~vaySp---d~~yla~~Da~rkv  511 (603)
T KOG0318|consen  481 AKLLEHRAAITDVAYSP---DGAYLAAGDASRKV  511 (603)
T ss_pred             eeeecccCCceEEEECC---CCcEEEEeccCCcE
Confidence              233445567777765   23466666666663

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=93.60  E-value=1.2  Score=52.11  Aligned_cols=146  Identities=17%  Similarity=0.139  Sum_probs=106.2

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEE-cCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECC-CCEEEEEc
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM-NMAIRKIS  158 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~iv-aGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~-N~rIrk~d  158 (495)
                      ..|.++|+|- .+++|-+|..+..+.... .|+. ...      .....+..|..+++|+ .|.+|.+|.+ ..+|.+-.
T Consensus       480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~-~~v------l~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~  552 (877)
T KOG1215|consen  480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS-RKV------LVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERAS  552 (877)
T ss_pred             cccCcEEEEeccCCceecccCCceeEEEEccCCc-eeE------EEecCCCCccceeeccccCeeEEecCCCCchhhhhc
Confidence            4799999997 788999999888332222 2332 111      1112347899999999 8889999998 55788877


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC-eEEEEECCCCcee--eCCCCCCcceE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ-AIREIQLHDDDCS--DNYDDTFHLGI  233 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~-rI~~~d~~g~~~~--~~~~~g~P~GI  233 (495)
                      .+|  ..++..                ..+..|+++++.-.+..+|-+|.... .|..++.+|..-.  .......|.++
T Consensus       553 ~dg~~~~~l~~----------------~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~  616 (877)
T KOG1215|consen  553 LDGSERAVLVT----------------NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGL  616 (877)
T ss_pred             CCCCCceEEEe----------------CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEeccccCCCceEE
Confidence            888  333321                11568999997777889999999888 7999999997653  34455579999


Q ss_pred             EEEecCcCeEEEEEccCCceE
Q 011014          234 FVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~  254 (495)
                      ++-   ...+|.++...+-+.
T Consensus       617 ~~~---~~~iyw~d~~~~~~~  634 (877)
T KOG1215|consen  617 SVF---EDYIYWTDWSNRAIS  634 (877)
T ss_pred             EEe---cceeEEeeccccceE
Confidence            998   578999999887553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=93.31  E-value=2.7  Score=44.49  Aligned_cols=70  Identities=19%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             cceEEEcCCCC-EEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC
Q 011014          133 PKGLAVDDRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  208 (495)
Q Consensus       133 P~GIAVD~dGn-IYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN  208 (495)
                      +.++++.+||+ +||+.. .+.|.++|..-   +.++.-|                  ..|.++++..+...|||++...
T Consensus        39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G------------------~~~~~i~~s~DG~~~~v~n~~~   99 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG------------------GNPRGIAVSPDGKYVYVANYEP   99 (369)
T ss_dssp             EEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S------------------SEEEEEEE--TTTEEEEEEEET
T ss_pred             eeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC------------------CCcceEEEcCCCCEEEEEecCC
Confidence            45688889887 999986 57999999433   5666332                  2578888544445789999999


Q ss_pred             CeEEEEECCCCce
Q 011014          209 QAIREIQLHDDDC  221 (495)
Q Consensus       209 ~rI~~~d~~g~~~  221 (495)
                      +.|..||..+...
T Consensus       100 ~~v~v~D~~tle~  112 (369)
T PF02239_consen  100 GTVSVIDAETLEP  112 (369)
T ss_dssp             TEEEEEETTT--E
T ss_pred             CceeEeccccccc
Confidence            9999999887554

...

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=93.31  E-value=0.31  Score=35.35  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=32.6

Q ss_pred             CeEEEEECCCC-eEEEEECCCCceee--CCCCCCcceEEEE
Q 011014          199 CSLLVIDRGNQ-AIREIQLHDDDCSD--NYDDTFHLGIFVL  236 (495)
Q Consensus       199 G~LyVaD~gN~-rI~~~d~~g~~~~~--~~~~g~P~GIAvd  236 (495)
                      ++||-+|.+.+ .|.+.+++|.....  ......|.|||||
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD   41 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD   41 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence            57999999999 99999999988654  4556679999998

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.29  E-value=0.21  Score=51.01  Aligned_cols=59  Identities=22%  Similarity=0.347  Sum_probs=45.7

Q ss_pred             CcceEEEcCCCCEEEEECCCCEEEEEcCCC------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECC--CCeEEE
Q 011014          132 HPKGLAVDDRGNIYIADTMNMAIRKISDTG------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS--SCSLLV  203 (495)
Q Consensus       132 ~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~--~G~LyV  203 (495)
                      .-.|+++|++|+||++|..++.|.++++++      +.+++-              ..-.|.+|.++. ++.  +|.|||
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--------------d~~~l~~pd~~~-i~~~~~g~L~v  251 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--------------DPRTLQWPDGLK-IDPEGDGYLWV  251 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---------------CC-GSSEEEEE-E-T--TS-EEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE--------------cCceeeccceee-eccccCceEEE
Confidence            346999999999999999999999999877      445532              112488999999 677  899999


Q ss_pred             EE
Q 011014          204 ID  205 (495)
Q Consensus       204 aD  205 (495)
                      .-
T Consensus       252 ~s  253 (287)
T PF03022_consen  252 LS  253 (287)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=93.00  E-value=1.4  Score=47.38  Aligned_cols=124  Identities=23%  Similarity=0.360  Sum_probs=76.0

Q ss_pred             CCceEEEEcCC-CcEEEEECCCCee-----EEE-EcCCCCc----cccc-cCCC-----cCcccc----------CCcce
Q 011014           83 MEPFSVAVSPS-GELLVLDSENNSR-----PKL-VAGSPEG----YYGH-VDGR-----PRGARM----------NHPKG  135 (495)
Q Consensus        83 ~~P~GIAVd~d-G~LyVaDs~n~~i-----i~i-vaGs~~g----~~G~-~dG~-----~~~a~f----------~~P~G  135 (495)
                      -+|.|+++++. |.||++|.+....     +.. -.|...|    ++|. .++.     ...+.+          -.|.|
T Consensus       239 RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsG  318 (399)
T COG2133         239 RNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSG  318 (399)
T ss_pred             CCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccce
Confidence            68999999995 9999999887311     111 1122111    0010 0110     001111          23579


Q ss_pred             EEEcC-C------CCEEEEECCCCEEEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC
Q 011014          136 LAVDD-R------GNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG  207 (495)
Q Consensus       136 IAVD~-d------GnIYVAD~~N~rIrk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g  207 (495)
                      |++-. +      |.+||+--+.-.+...+.+| ...+..+...   +  +.      ...|.+|+ +..||.|||+|-.
T Consensus       319 maFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~---~--d~------~gR~~dV~-v~~DGallv~~D~  386 (399)
T COG2133         319 MAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLS---G--DL------GGRPRDVA-VAPDGALLVLTDQ  386 (399)
T ss_pred             eEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEe---c--CC------CCcccceE-ECCCCeEEEeecC
Confidence            99984 2      78999998887788888777 2333211110   0  00      14899998 7999999999877


Q ss_pred             -CCeEEEEECCC
Q 011014          208 -NQAIREIQLHD  218 (495)
Q Consensus       208 -N~rI~~~d~~g  218 (495)
                       |.+|.++...+
T Consensus       387 ~~g~i~Rv~~~~  398 (399)
T COG2133         387 GDGRILRVSYAG  398 (399)
T ss_pred             CCCeEEEecCCC
Confidence             67999998754

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.21  E-value=12  Score=38.63  Aligned_cols=113  Identities=16%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             CcceEEEcCCCCEEEEECCC------CEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EE
Q 011014          132 HPKGLAVDDRGNIYIADTMN------MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LL  202 (495)
Q Consensus       132 ~P~GIAVD~dGnIYVAD~~N------~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-Ly  202 (495)
                      -+.||+++.+|.+||++-+.      ++|++|+.+|  +..+.- ....... ..+......=....+|+ +..+|. ||
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~v-P~~~~~~-~~~~~~~~~N~G~E~la-~~~dG~~l~  162 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPV-PAAFLPD-ANGTSGRRNNRGFEGLA-VSPDGRTLF  162 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEcc-ccccccc-cCccccccCCCCeEEEE-ECCCCCEEE
Confidence            78899998899999999999      9999999888  333310 1000000 00000011112345677 566666 77


Q ss_pred             EEECCC---------------CeEEEEECCC-C-c---eeeCCC------CC-CcceEEEEecCcCeEEEEEcc
Q 011014          203 VIDRGN---------------QAIREIQLHD-D-D---CSDNYD------DT-FHLGIFVLVAAAFFGYMLALL  249 (495)
Q Consensus       203 VaD~gN---------------~rI~~~d~~g-~-~---~~~~~~------~g-~P~GIAvd~~a~~~~yv~d~~  249 (495)
                      ++-...               .||.+++... . .   ..+...      .+ .+..|+...  ...++|.+..
T Consensus       163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~--d~~lLvLER~  234 (326)
T PF13449_consen  163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP--DGRLLVLERD  234 (326)
T ss_pred             EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC--CCcEEEEEcc
Confidence            764322               5777888764 1 1   122211      12 245555554  4557888876

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.04  E-value=0.23  Score=41.93  Aligned_cols=31  Identities=16%  Similarity=0.435  Sum_probs=27.4

Q ss_pred             cccCCcceEEEcCCCC-EEEEECCCCEEEEEc
Q 011014          128 ARMNHPKGLAVDDRGN-IYIADTMNMAIRKIS  158 (495)
Q Consensus       128 a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d  158 (495)
                      ..|..|.||++|++++ |||||...+.|+++.
T Consensus        51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~   82 (86)
T PF01731_consen   51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYK   82 (86)
T ss_pred             ccCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence            3578999999999765 999999999999886

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=91.83  E-value=2.8  Score=49.15  Aligned_cols=156  Identities=13%  Similarity=0.100  Sum_probs=105.4

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEcCCC
Q 011014           84 EPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        84 ~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      ....+.++. ++.+|-+|.....+-...........      ........|.|+|+|- .+++|-+|..+..|.+.+.+|
T Consensus       438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~------~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g  511 (877)
T KOG1215|consen  438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECE------LCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDG  511 (877)
T ss_pred             cceEEEEEecCCEEEEEeccCCeEeeeccCCCccce------EeccCccccCcEEEEeccCCceecccCCceeEEEEccC
Confidence            344444443 45688888766534333221110111      1223567899999998 678999999999999999666


Q ss_pred             --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC-CCeEEEEECCCCceee--CCCCCCcceEEEE
Q 011014          162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSD--NYDDTFHLGIFVL  236 (495)
Q Consensus       162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g-N~rI~~~d~~g~~~~~--~~~~g~P~GIAvd  236 (495)
                        ..++++.                .+..|..+++....|.+|.+|++ ..+|-+-.++|.....  ..+...|.|+++|
T Consensus       512 ~~~~vl~~~----------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d  575 (877)
T KOG1215|consen  512 SSRKVLVSK----------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTID  575 (877)
T ss_pred             CceeEEEec----------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEE
Confidence              3444332                13578888877779999999998 5689999999977654  2335689999999


Q ss_pred             ecCcCeEEEEEccCC-ceEEEeeCCCC
Q 011014          237 VAAAFFGYMLALLQR-RVQAMFSSKDD  262 (495)
Q Consensus       237 ~~a~~~~yv~d~~~~-Rv~~~~~s~~~  262 (495)
                      .. ..-+|.+|...+ -+.+.......
T Consensus       576 ~~-~~~~yw~d~~~~~~i~~~~~~g~~  601 (877)
T KOG1215|consen  576 YE-TDRLYWADAKLDYTIESANMDGQN  601 (877)
T ss_pred             ee-cceeEEEcccCCcceeeeecCCCc
Confidence            85 456788888877 46555555444

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=91.77  E-value=0.51  Score=32.88  Aligned_cols=36  Identities=14%  Similarity=0.063  Sum_probs=31.5

Q ss_pred             ccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 011014          185 KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  220 (495)
Q Consensus       185 ~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~  220 (495)
                      .+..|.++++....+.||.+|...+.|.+.+.+|..
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~   42 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN   42 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence            467899999777788999999999999999998854

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=91.14  E-value=1.8  Score=48.04  Aligned_cols=69  Identities=22%  Similarity=0.321  Sum_probs=45.4

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCC----------------eeEEEEcCCC--C---------ccccc---cC----CCcC
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENN----------------SRPKLVAGSP--E---------GYYGH---VD----GRPR  126 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~----------------~ii~ivaGs~--~---------g~~G~---~d----G~~~  126 (495)
                      ..+|.+|++.+ .|++|++.+.|.                .+++++..+.  .         -..|.   ..    ....
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            47999999998 688999998766                2344443221  0         00111   01    1112


Q ss_pred             ccccCCcceEEEcCCCCEEEEECC
Q 011014          127 GARMNHPKGLAVDDRGNIYIADTM  150 (495)
Q Consensus       127 ~a~f~~P~GIAVD~dGnIYVAD~~  150 (495)
                      ...|+.|-+|++|+.|+|||+--+
T Consensus       496 ~~~f~~PDnl~fD~~GrLWi~TDg  519 (616)
T COG3211         496 ANWFNSPDNLAFDPWGRLWIQTDG  519 (616)
T ss_pred             cccccCCCceEECCCCCEEEEecC
Confidence            356999999999999999998544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.54  E-value=5.1  Score=41.48  Aligned_cols=127  Identities=21%  Similarity=0.288  Sum_probs=70.8

Q ss_pred             CCceEEEEcCCCcEEEEECCC------CeeEEEEc-CCCCccc---ccc----CCCcCccccCCcceEEEcCCCC-EEEE
Q 011014           83 MEPFSVAVSPSGELLVLDSEN------NSRPKLVA-GSPEGYY---GHV----DGRPRGARMNHPKGLAVDDRGN-IYIA  147 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n------~~ii~iva-Gs~~g~~---G~~----dG~~~~a~f~~P~GIAVD~dGn-IYVA  147 (495)
                      ..+.||++.++|.+||++-..      +.+.++-. |......   ...    .+......=....|||+.++|. ||++
T Consensus        85 ~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   85 LDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             CChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            378899998899999999988      75555432 2221111   000    0000000112356999999999 8876


Q ss_pred             E-------CC--------CCEEEEEcCC--C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC-
Q 011014          148 D-------TM--------NMAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-  207 (495)
Q Consensus       148 D-------~~--------N~rIrk~d~~--G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g-  207 (495)
                      =       ..        ..||.+++..  |  ...++--.        +.+.....-..+.++++ -+++.|+|.++. 
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~l--------d~~~~~~~~~~isd~~a-l~d~~lLvLER~~  235 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPL--------DPPPTAPGDNGISDIAA-LPDGRLLVLERDF  235 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeC--------CccccccCCCCceeEEE-ECCCcEEEEEccC
Confidence            2       11        1577888843  3  22221100        00000013456777885 456679999987 


Q ss_pred             ------CCeEEEEECCC
Q 011014          208 ------NQAIREIQLHD  218 (495)
Q Consensus       208 ------N~rI~~~d~~g  218 (495)
                            ..+|+++++..
T Consensus       236 ~~~~~~~~ri~~v~l~~  252 (326)
T PF13449_consen  236 SPGTGNYKRIYRVDLSD  252 (326)
T ss_pred             CCCccceEEEEEEEccc
Confidence                  34677777664

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=90.40  E-value=1.2  Score=49.30  Aligned_cols=81  Identities=21%  Similarity=0.232  Sum_probs=52.6

Q ss_pred             CccccCCcceEEEcC-CCCEEEEECCCC----------------EEEEEcC-CC----------cEEEecCcccCCCCCC
Q 011014          126 RGARMNHPKGLAVDD-RGNIYIADTMNM----------------AIRKISD-TG----------VTTIAGGKWSRGVGHV  177 (495)
Q Consensus       126 ~~a~f~~P~GIAVD~-dGnIYVAD~~N~----------------rIrk~d~-~G----------V~tiaGg~~G~~~g~~  177 (495)
                      ....|.+|.+|++.+ .|.+|++.+.|.                +|.++-+ ++          ++..+|.......+..
T Consensus       412 GAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~  491 (616)
T COG3211         412 GATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS  491 (616)
T ss_pred             CCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence            456899999999998 778999999876                3555542 22          2333332221111111


Q ss_pred             CCCCcCcccCCCceEEEECCCCeEEEEECCC
Q 011014          178 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  208 (495)
Q Consensus       178 dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN  208 (495)
                       .......|+.|-+|+ +|+.|+|||+.-++
T Consensus       492 -~~~~~~~f~~PDnl~-fD~~GrLWi~TDg~  520 (616)
T COG3211         492 -ANINANWFNSPDNLA-FDPWGRLWIQTDGS  520 (616)
T ss_pred             -cCcccccccCCCceE-ECCCCCEEEEecCC
Confidence             112225699999999 79999999986544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.92  E-value=19  Score=38.96  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=74.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-C-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-G-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G-  161 (495)
                      .-.++++.++|.+.++-+... .+++.+-...+..-..    ..+.-..-..++++++|+++++=...+.|+.++-. | 
T Consensus       205 ~v~~~~fs~d~~~l~s~s~D~-tiriwd~~~~~~~~~~----l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  205 GVSDVAFSPDGSYLLSGSDDK-TLRIWDLKDDGRNLKT----LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             ceeeeEECCCCcEEEEecCCc-eEEEeeccCCCeEEEE----ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence            346788889998666655444 6666543111111000    01122344799999999999999999999999944 4 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  220 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~  220 (495)
                       +.++.+-..                 .-.+++ +..+++++++-...+.|+.+|..+..
T Consensus       280 ~~~~l~~hs~-----------------~is~~~-f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  280 CVRKLKGHSD-----------------GISGLA-FSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             EEEeeeccCC-----------------ceEEEE-ECCCCCEEEEcCCCccEEEEECCCCc
Confidence             455533211                 123445 67888888777789999999999888

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=89.17  E-value=29  Score=39.99  Aligned_cols=145  Identities=16%  Similarity=0.140  Sum_probs=90.8

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCcccc--ccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYG--HVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G--~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~  159 (495)
                      ...-..++..|||.+.++-.... .+++..-.. |.+-  +.+      .=..-+++.+..+|+..++-+..++||.+|-
T Consensus       350 ~~~i~~l~YSpDgq~iaTG~eDg-KVKvWn~~S-gfC~vTFte------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDl  421 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATGAEDG-KVKVWNTQS-GFCFVTFTE------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDL  421 (893)
T ss_pred             ccceeeEEECCCCcEEEeccCCC-cEEEEeccC-ceEEEEecc------CCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence            34567889999999999887776 566654322 1111  100      1122358899999999999999999999994


Q ss_pred             -CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEE-CCCCeEEEEECCCCcee-eCCCCCCc-ceE
Q 011014          160 -TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID-RGNQAIREIQLHDDDCS-DNYDDTFH-LGI  233 (495)
Q Consensus       160 -~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD-~gN~rI~~~d~~g~~~~-~~~~~g~P-~GI  233 (495)
                       .+  ..|+..             ....+|   .+|+ +|++|.|.+|- ..+-.|.+.+..++... ...+.--| .++
T Consensus       422 kRYrNfRTft~-------------P~p~Qf---scva-vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l  484 (893)
T KOG0291|consen  422 KRYRNFRTFTS-------------PEPIQF---SCVA-VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL  484 (893)
T ss_pred             cccceeeeecC-------------CCceee---eEEE-EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee
Confidence             44  455532             112334   3566 78888887765 46668888888776553 22222233 456


Q ss_pred             EEEecCcCeEEEEEccCCce
Q 011014          234 FVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv  253 (495)
                      ++..  .+...++..+..-|
T Consensus       485 ~f~~--~~~~LaS~SWDkTV  502 (893)
T KOG0291|consen  485 SFSP--DGSLLASGSWDKTV  502 (893)
T ss_pred             EEcc--ccCeEEeccccceE
Confidence            6665  33445555555555

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=89.13  E-value=0.73  Score=32.84  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=18.1

Q ss_pred             CCceEEEEcCCCcEEEEECCC
Q 011014           83 MEPFSVAVSPSGELLVLDSEN  103 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n  103 (495)
                      ..+.+|++|++|+|||+-..+
T Consensus        13 ~~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             eeEEEEEECCCCCEEEEEeec
Confidence            469999999999999997644

SBBP stands for Seven Bladed Beta Propeller.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.99  E-value=1.1  Score=31.27  Aligned_cols=40  Identities=15%  Similarity=0.230  Sum_probs=29.4

Q ss_pred             CCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEE
Q 011014          197 SSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVL  236 (495)
Q Consensus       197 ~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd  236 (495)
                      ..+.|||++.+.+.|.+|++....... ..-...|.+|+++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            356799999999999999987655433 3333468888763

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=88.79  E-value=0.35  Score=34.52  Aligned_cols=19  Identities=42%  Similarity=0.772  Sum_probs=16.6

Q ss_pred             CCcceEEEcCCCCEEEEEC
Q 011014          131 NHPKGLAVDDRGNIYIADT  149 (495)
Q Consensus       131 ~~P~GIAVD~dGnIYVAD~  149 (495)
                      ..+.+||+|.+|||||+=.
T Consensus        13 ~~~~~IavD~~GNiYv~G~   31 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGY   31 (38)
T ss_pred             eeEEEEEECCCCCEEEEEe
Confidence            3688999999999999854

SBBP stands for Seven Bladed Beta Propeller.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=88.59  E-value=13  Score=38.59  Aligned_cols=117  Identities=15%  Similarity=0.101  Sum_probs=75.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCC-----CCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGS-----PEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS  158 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs-----~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d  158 (495)
                      .+--+|.||+|-|+.+-.++. .|++.+-.     +...+.-.+     .....=++|-+.++|...+.-+.++-|..+|
T Consensus       142 ~~pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~-----~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD  215 (311)
T KOG1446|consen  142 GRPIAAFDPEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITD-----NDEAEWTDLEFSPDGKSILLSTNASFIYLLD  215 (311)
T ss_pred             CCcceeECCCCcEEEEecCCC-eEEEEEecccCCCCceeEccCC-----CCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence            344578899998888887777 67765422     222222111     2333445999999999666666688889998


Q ss_pred             -CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 011014          159 -DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  221 (495)
Q Consensus       159 -~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~  221 (495)
                       -+|  +.++.+-..              ..+.|.+-+ ..+++..+++-.++++|.+.+++....
T Consensus       216 Af~G~~~~tfs~~~~--------------~~~~~~~a~-ftPds~Fvl~gs~dg~i~vw~~~tg~~  266 (311)
T KOG1446|consen  216 AFDGTVKSTFSGYPN--------------AGNLPLSAT-FTPDSKFVLSGSDDGTIHVWNLETGKK  266 (311)
T ss_pred             ccCCcEeeeEeeccC--------------CCCcceeEE-ECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence             567  566644221              123444444 567788888888889999998876543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=88.17  E-value=13  Score=40.05  Aligned_cols=147  Identities=12%  Similarity=0.075  Sum_probs=88.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEE---cCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLV---AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT  160 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~iv---aGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~  160 (495)
                      .-.+|++.+||.|..+..... .-++.   .|..+   -..+|     ....-.+|+++++|....+-+..+.++++|-.
T Consensus       305 ~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtgr~i---m~L~g-----H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  305 GVFSIAFQPDGSLAATGGLDS-LGRVWDLRTGRCI---MFLAG-----HIKEILSVAFSPNGYHLATGSSDNTCKVWDLR  375 (459)
T ss_pred             ccceeEecCCCceeeccCccc-hhheeecccCcEE---EEecc-----cccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence            456889999999888754333 11111   11110   00011     23344599999999999998888888888854


Q ss_pred             C---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCCCCcceEEEEe
Q 011014          161 G---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLV  237 (495)
Q Consensus       161 G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~g~P~GIAvd~  237 (495)
                      +   +.+|.+-                 -+--..|.+....|+.+++-...+.+...+..+..+...-..--..=+++|.
T Consensus       376 ~r~~ly~ipAH-----------------~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di  438 (459)
T KOG0272|consen  376 MRSELYTIPAH-----------------SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI  438 (459)
T ss_pred             ccccceecccc-----------------cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe
Confidence            4   6777331                 1233556765568889999999999999988776664321111134455555


Q ss_pred             cCcCeEEEEEccCCceEEEe
Q 011014          238 AAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       238 ~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      ...+...++....+-+ |+|
T Consensus       439 s~d~~~i~t~s~DRT~-KLW  457 (459)
T KOG0272|consen  439 SPDSQAIATSSFDRTI-KLW  457 (459)
T ss_pred             ccCCceEEEeccCcee-eec
Confidence            4444434454444433 554

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=87.82  E-value=2  Score=36.29  Aligned_cols=33  Identities=18%  Similarity=0.112  Sum_probs=27.9

Q ss_pred             cCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 011014          186 FSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  218 (495)
Q Consensus       186 f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g  218 (495)
                      |..|+||++......|||++...+.|+++..+.
T Consensus        53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            678999996555678999999999999998653

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=87.81  E-value=22  Score=32.72  Aligned_cols=143  Identities=15%  Similarity=0.107  Sum_probs=74.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCCC-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~G-  161 (495)
                      ....+++++++.++++...+. .+.++.-..........     ..-.....++++++|+ |+++.. ++.|+.++... 
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~  209 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDG-TIKLWDLRTGKCVATLT-----GHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTG  209 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCC-cEEEEEccccccceeEe-----cCccccceEEECCCcCEEEEecC-CCcEEEEECCCC
Confidence            456777887777666655333 34443221000000000     0112456889999885 555544 78899998543 


Q ss_pred             --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee-e-CCCCCCcceEEEEe
Q 011014          162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS-D-NYDDTFHLGIFVLV  237 (495)
Q Consensus       162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~-~-~~~~g~P~GIAvd~  237 (495)
                        +..+.+                 .-.....++ ..+++.++++...++.|+.++....... . ....+....+++..
T Consensus       210 ~~~~~~~~-----------------~~~~i~~~~-~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~  271 (289)
T cd00200         210 KCLGTLRG-----------------HENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP  271 (289)
T ss_pred             ceecchhh-----------------cCCceEEEE-EcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC
Confidence              222211                 011344566 4555777777766788998888754332 2 22222345666664


Q ss_pred             cCcCeEEEEEccCCce
Q 011014          238 AAAFFGYMLALLQRRV  253 (495)
Q Consensus       238 ~a~~~~yv~d~~~~Rv  253 (495)
                        .+...++...++.+
T Consensus       272 --~~~~l~~~~~d~~i  285 (289)
T cd00200         272 --DGKRLASGSADGTI  285 (289)
T ss_pred             --CCCEEEEecCCCeE
Confidence              33344555555444

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.55  E-value=37  Score=33.86  Aligned_cols=72  Identities=13%  Similarity=0.057  Sum_probs=42.8

Q ss_pred             CCCEEEEECCCCEEEEEcCC-C-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 011014          141 RGNIYIADTMNMAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  216 (495)
Q Consensus       141 dGnIYVAD~~N~rIrk~d~~-G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~  216 (495)
                      +|.||.-=....+|.+++++ | |....--. +-   ...-.....+.+-++|||+++..+.+|++-..=-.+..+..
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS-~L---~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~  258 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLS-GL---LKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKL  258 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEcc-CC---chhcCccccccccccceeecCcCCeEEEecCcCceeEEEEe
Confidence            57777776778899999954 4 32221110 00   00001122346789999988888899998765455555443

>PRK02888 nitrous-oxide reductase; Validated

Probab=86.35  E-value=6.3  Score=44.64  Aligned_cols=72  Identities=10%  Similarity=-0.023  Sum_probs=54.2

Q ss_pred             CCCceEEEECCCCeEEEEECCCCeEEEEECCCCc------------eeeCCCCCC-cceEEEEecCcCeEEEEEccCCce
Q 011014          187 SNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD------------CSDNYDDTF-HLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       187 ~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~------------~~~~~~~g~-P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .+|+||.+.++...+||+....+.|.+||.....            +......|. |.-.++|.  .++.|++-++.+-|
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg--~G~aytslf~dsqv  398 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG--RGNAYTTLFLDSQI  398 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC--CCCEEEeEeeccee
Confidence            4799999544444689999999999999988733            223444454 99999986  56899999999999


Q ss_pred             EEEeeCC
Q 011014          254 QAMFSSK  260 (495)
Q Consensus       254 ~~~~~s~  260 (495)
                      .+....+
T Consensus       399 ~kwn~~~  405 (635)
T PRK02888        399 VKWNIEA  405 (635)
T ss_pred             EEEehHH
Confidence            7765443

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=86.24  E-value=1.7  Score=31.41  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=29.2

Q ss_pred             CCEEEEECCCC-EEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEE
Q 011014          142 GNIYIADTMNM-AIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVY  194 (495)
Q Consensus       142 GnIYVAD~~N~-rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~  194 (495)
                      |+||-+|...+ +|.+.+.+|  ..++.-                ..+..|.+||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~----------------~~l~~P~giaV   40 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVIS----------------DDLQHPEGIAV   40 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEE----------------SSTSSEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEE----------------CCCCCcCEEEE
Confidence            57999999999 999999888  455532                13779999994

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.05  E-value=51  Score=35.73  Aligned_cols=152  Identities=13%  Similarity=0.095  Sum_probs=90.1

Q ss_pred             eEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC---
Q 011014           86 FSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG---  161 (495)
Q Consensus        86 ~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G---  161 (495)
                      ..+.+.++|..+++-.... .+++..-.. +.. ..... ....-..-.++++.++|.+.++=.....|+++|. +.   
T Consensus       163 ~~~~fs~~g~~l~~~~~~~-~i~~~~~~~-~~~-~~~~~-l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~  238 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDG-LIRIWKLEG-IKS-NLLRE-LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN  238 (456)
T ss_pred             EEEEEcCCCCeEEEccCCC-cEEEeeccc-ccc-hhhcc-ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence            3466788888755443333 444332110 000 00000 0112233459999999998888888899999984 33   


Q ss_pred             cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEEEecC
Q 011014          162 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVAA  239 (495)
Q Consensus       162 V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAvd~~a  239 (495)
                      +.++.|-                 ...-++++ +.++|+++++-...+.|+..+..+..|..  ....+.=.++++..  
T Consensus       239 ~~~l~gH-----------------~~~v~~~~-f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~--  298 (456)
T KOG0266|consen  239 LKTLKGH-----------------STYVTSVA-FSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP--  298 (456)
T ss_pred             EEEecCC-----------------CCceEEEE-ecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC--
Confidence            5666432                 12336777 56667999999999999999998866653  22222224455554  


Q ss_pred             cCeEEEEEccCCceEEEeeCCCC
Q 011014          240 AFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       240 ~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      .+...++......| .+|....+
T Consensus       299 d~~~l~s~s~d~~i-~vwd~~~~  320 (456)
T KOG0266|consen  299 DGNLLVSASYDGTI-RVWDLETG  320 (456)
T ss_pred             CCCEEEEcCCCccE-EEEECCCC
Confidence            66666666666666 56666554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=83.84  E-value=48  Score=38.99  Aligned_cols=111  Identities=17%  Similarity=0.215  Sum_probs=64.7

Q ss_pred             ceEEEEcCCCc-EEEEECCCCeeEEEEcC-CCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCC
Q 011014           85 PFSVAVSPSGE-LLVLDSENNSRPKLVAG-SPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG  161 (495)
Q Consensus        85 P~GIAVd~dG~-LyVaDs~n~~ii~ivaG-s~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d-~~G  161 (495)
                      -+.|++|++|+ |++++++.  .++++.+ +.....-..+-   ..  ..-.+|+.+  ++.+++-+.++.|.++. +++
T Consensus        16 ~t~i~~d~~gefi~tcgsdg--~ir~~~~~sd~e~P~ti~~---~g--~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   16 LTLICYDPDGEFICTCGSDG--DIRKWKTNSDEEEPETIDI---SG--ELVSSIACY--SNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             eEEEEEcCCCCEEEEecCCC--ceEEeecCCcccCCchhhc---cC--ceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence            56889999998 44444433  4444432 22110000000   00  011244444  45777777788888877 443


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  221 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~  221 (495)
                       -.++                 .++|..|-.++.++.+|...++-...-.|..++.+....
T Consensus        87 ~~~~i-----------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~  130 (933)
T KOG1274|consen   87 EEDTI-----------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ  130 (933)
T ss_pred             Cccce-----------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch
Confidence             1111                 245677777777889999998888888888888776443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=82.22  E-value=89  Score=34.82  Aligned_cols=153  Identities=14%  Similarity=0.051  Sum_probs=88.5

Q ss_pred             CCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014           80 KFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        80 ~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~  159 (495)
                      .++..|.++|+.++|.+.|+-...+ ++.+-....  .+-. +      --..|.++|+.++++..+.-....+|+++.-
T Consensus       403 ~lg~QP~~lav~~d~~~avv~~~~~-iv~l~~~~~--~~~~-~------~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl  472 (603)
T KOG0318|consen  403 KLGSQPKGLAVLSDGGTAVVACISD-IVLLQDQTK--VSSI-P------IGYESSAVAVSPDGSEVAVGGQDGKVHVYSL  472 (603)
T ss_pred             ecCCCceeEEEcCCCCEEEEEecCc-EEEEecCCc--ceee-c------cccccceEEEcCCCCEEEEecccceEEEEEe
Confidence            4568999999999987777665555 322221211  1000 0      1236889999999987777666677887775


Q ss_pred             CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCCCC----cceE
Q 011014          160 TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTF----HLGI  233 (495)
Q Consensus       160 ~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~g~----P~GI  233 (495)
                      +|  ....+-.              ...-..++.|++ .+++..+++---+..|..++....+..+ ..-+|    =.++
T Consensus       473 ~g~~l~ee~~~--------------~~h~a~iT~vay-Spd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~FHtakI~~~  536 (603)
T KOG0318|consen  473 SGDELKEEAKL--------------LEHRAAITDVAY-SPDGAYLAAGDASRKVVLYDVASREVKT-NRWAFHTAKINCV  536 (603)
T ss_pred             cCCcccceeee--------------ecccCCceEEEE-CCCCcEEEEeccCCcEEEEEcccCceec-ceeeeeeeeEEEE
Confidence            55  1111000              011124677885 5566555554467899999988877632 22222    2344


Q ss_pred             EEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      |...  ......+..+...|  ++.+-..
T Consensus       537 aWsP--~n~~vATGSlDt~V--iiysv~k  561 (603)
T KOG0318|consen  537 AWSP--NNKLVATGSLDTNV--IIYSVKK  561 (603)
T ss_pred             EeCC--CceEEEeccccceE--EEEEccC
Confidence            4443  33455666666666  5555554

>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]

Probab=81.52  E-value=3.2  Score=45.04  Aligned_cols=129  Identities=14%  Similarity=0.052  Sum_probs=89.3

Q ss_pred             cccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEE
Q 011014          128 ARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID  205 (495)
Q Consensus       128 a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD  205 (495)
                      .-|.-|.|..+|.+|+.+++|-.-|.++++.+.-  +....|+.      ...+ .....|..|..++ +.+++-++|+|
T Consensus       165 ~vlqvhyg~t~df~~~~d~TgV~mH~t~kp~pkla~~~L~l~~~------tvp~-~~~~~f~~~tsc~-v~~n~~ihvfa  236 (501)
T KOG3567|consen  165 FVLQVHYGLTIDFDGNYDVTGVGMHQTEKPQPKLAKTMLLLGDG------TVPG-EGTKHFETPTSCA-VEENGPIHVFA  236 (501)
T ss_pred             eEEEeccccccCCCCCcccccceeeeeccCCchhhceEEeecCC------ccCC-CCccccCCCceEE-EecCcceeeEE
Confidence            3577899999999999999999999999998543  33332321      1111 2345688889998 68899999999


Q ss_pred             C-CCCeEEEEECCCCceee-------CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCCCc
Q 011014          206 R-GNQAIREIQLHDDDCSD-------NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPR  264 (495)
Q Consensus       206 ~-gN~rI~~~d~~g~~~~~-------~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~~~  264 (495)
                      . -|-+|......|..+..       .-+.-.|.-..+...-...+-|++..|.|++-++.+..+-+
T Consensus       237 ~r~hTh~Lgk~vsG~lv~q~~~g~w~~ig~r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s~~~~r  303 (501)
T KOG3567|consen  237 YRCHTHILGKVVSGYLVAQKHEGHWTLIGRRDPQLPQLFEPVNHIVCVADGDNQRVRCFFQSLGRNR  303 (501)
T ss_pred             eeeeehhhcceeeeeEeeeccCcceeeccccCCCchhhhcCCCcceeeecCCceEEEEEEccCCcCc
Confidence            6 45577777777766431       11122466666665445467889999999987777744443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	495
1rwi_B	270	Extracellular Domain Of Mycobacterium Tuberculosis		2e-04
1rwi_B	270	Extracellular Domain Of Mycobacterium Tuberculosis		8e-04

>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd Length = 270

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 63  MIKFEGGYTVETV--FEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGH 120
           ++    G   +TV  F+G  +   P  +AV   G + V D  NN   KL AGS       
Sbjct: 89  VVTLAAGSNNQTVLPFDGLNY---PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP 145
Query: 121 VDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI 157
             G      +N P G+AVD+ GN+Y+ DT N  + K+
Sbjct: 146 FTG------LNDPDGVAVDNSGNVYVTDTDNNRVVKL 176

>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd Length = 270

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 63  MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVD 122
           ++K   G T  TV   +    +P  +AV  +G + V D  NN    L AGS        D
Sbjct: 48  VVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFD 105
Query: 123 GRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSE 182
           G      +N+P+GLAVD +G +Y+AD  N  + K        +A G  ++ V    G   
Sbjct: 106 G------LNYPEGLAVDTQGAVYVADRGNNRVVK--------LAAGSKTQTVLPFTG--- 148
Query: 183 DAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 220
                ND D V V +S ++ V D  N  + +++   ++
Sbjct: 149 ----LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	495
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	4e-32
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	7e-19
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	3e-17
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	5e-14
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-31
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	1e-07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	9e-05
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-04
3kya_A	496	Putative phosphatase; structural genomics, joint c	7e-25
3kya_A	496	Putative phosphatase; structural genomics, joint c	6e-15
3kya_A	496	Putative phosphatase; structural genomics, joint c	1e-04
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	5e-17
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-16
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	5e-16
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	5e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-10
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	5e-09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	6e-11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	7e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-04
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	9e-10
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	9e-10
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-09
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	6e-07
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	4e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-09
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	2e-09
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	2e-09
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	4e-07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-05
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	9e-04

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score =  126 bits (318), Expect = 4e-32
 Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 15/141 (10%)

Query: 85  PFSVAVSPSGELLVLDSENNS--------RPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 136
           P+ +         + D   +S          +   GS        DG    A    P G+
Sbjct: 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSA-TQKTVQDGLREEALFAQPNGM 328

Query: 137 AVDDRGNIYIADTM-NMAIRKI--SDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV 193
            VD+ GN YI D      +RK+   D  V+T+AG +       +DG   +A F+  +D+ 
Sbjct: 329 TVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG-QVDVA-SQIDGTPLEATFNYPYDIC 386

Query: 194 YVGSSCSLLVIDRGNQAIREI 214
                    + +   +AIR+ 
Sbjct: 387 -YDGEGGYWIAEAWGKAIRKY 406

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 87.7 bits (217), Expect = 7e-19
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 6/148 (4%)

Query: 78  GSKFGMEPFSVAVSPSGELL-VLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 136
           GS F  +  +VA+  + E L  +DS  N     V          ++          P  +
Sbjct: 214 GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLI 273

Query: 137 AVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV 195
                 N Y++D    ++ KI+  G      G    +     DG  E+A F+    +  V
Sbjct: 274 YYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQK--TVQDGLREEALFAQPNGMT-V 330

Query: 196 GSSCSLLVIDR-GNQAIREIQLHDDDCS 222
               +  ++D      +R++ + D   S
Sbjct: 331 DEDGNFYIVDGFKGYCLRKLDILDGYVS 358

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 83.1 bits (205), Expect = 3e-17
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 84  EPFSVAVSPSGELLVLDSENNSR----------PKLVAGSPEGYYGHVDGRPRGARMNHP 133
           +P  + V   G   ++D                   VAG        +DG P  A  N+P
Sbjct: 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV-DVASQIDGTPLEATFNYP 382

Query: 134 KGLAVDDRGNIYIADTMNMAIRKIS 158
             +  D  G  +IA+    AIRK +
Sbjct: 383 YDICYDGEGGYWIAEAWGKAIRKYA 407

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 72.7 bits (178), Expect = 5e-14
 Identities = 28/180 (15%), Positives = 50/180 (27%), Gaps = 42/180 (23%)

Query: 53  SPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSG-----ELLVLDSENNSRP 107
            P   V+  S +  EG    + + +GS FG +   V V            V+  +NN+  
Sbjct: 13  DPNQPVTVESFMPVEGKLREKVIVKGSNFGTDKSKVKVYFVDEAAERLSTVIGIDNNTLY 72

Query: 108 KLV------------------------------------AGSPEGYYGHVDGRPRGARMN 131
            L                                     +GS     G+ DG    A+  
Sbjct: 73  CLAPRQLPGGNRIKVIVDGKEVTTDGTFKYEQAQNVSTISGSA-SKDGNDDGDLASAKFK 131

Query: 132 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFD 191
           +  G+A      +      +  +R IS             +G        +   +S  ++
Sbjct: 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE 191

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score =  124 bits (312), Expect = 3e-31
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 27/189 (14%)

Query: 56  TAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELL-VLDSENN---------- 104
            + ++  + +++      T     +     F +   PSG    ++    +          
Sbjct: 243 NSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK 302

Query: 105 ----SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLA---------VDDRGNIYIADTMN 151
               + P +V G   G    VDG  + ARM+ P+              D  + Y  D  N
Sbjct: 303 TKRLTTPYIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN 361

Query: 152 MAIRKISDTG-VTTIAGGKWSRGVGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ 209
             IR ++  G VTT AG   +   G+ DG   ++A+F++   +VY        + DR N+
Sbjct: 362 HCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR 421

Query: 210 AIREIQLHD 218
            IR+I   +
Sbjct: 422 RIRKIGYEE 430

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 29/166 (17%), Positives = 44/166 (26%), Gaps = 16/166 (9%)

Query: 54  PKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGS 113
           P   V  S     EGG     +  G  FG +   + V+  G+   +          V   
Sbjct: 14  PNKPVVISEFSPKEGGLGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVV-- 71

Query: 114 PEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRG 173
                      P  A     K   ++D G        N          VTT  G  +   
Sbjct: 72  -----------PAKAYDGDIKLSILNDEGEEIANTEANEKFVYQKKMLVTTFLGTMYDGN 120

Query: 174 --VGHVDGP-SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 216
                 DGP  +   F     + +   + + L +       R I  
Sbjct: 121 TKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDF 166

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 43.9 bits (103), Expect = 9e-05
 Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 9/67 (13%)

Query: 110 VAGSPEGYYGH---VDGRPRG-ARMNHPKGLAVDDRGN--IYIADTMNMAIRKISDTG-- 161
             G+           DG             L+ D + +  +Y+    +   R I      
Sbjct: 112 FLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQH-PTRLIDFEKEY 170

Query: 162 VTTIAGG 168
           V+T+  G
Sbjct: 171 VSTVYSG 177

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 21/157 (13%), Positives = 44/157 (28%), Gaps = 27/157 (17%)

Query: 63  MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLV--LDSENNSRPKLVAGSPEGYYGH 120
           +I FE    V TV+ G     +  ++  +   + ++   D  NN RP     + E  +  
Sbjct: 163 LIDFEKE-YVSTVYSGLS---KVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKV 218

Query: 121 VDGRPRGARMNHPKGLAVDDR-GNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHV 177
           +       +  +  G       G +Y        + +   T    T +            
Sbjct: 219 ITE---LTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI--------- 266

Query: 178 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 214
                      +F + +  S     ++      I   
Sbjct: 267 ------QDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score =  106 bits (265), Expect = 7e-25
 Identities = 39/192 (20%), Positives = 59/192 (30%), Gaps = 32/192 (16%)

Query: 56  TAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSR--------- 106
                S     +                  F + + P+G+       NN           
Sbjct: 283 IKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342

Query: 107 ------PKLVAGSPEGYYGHVDGRPRGARMNHP--------KGLAVDDRGNIYIADTMNM 152
                 P    G      G+ D     ARMN+P             ++  + Y  D +N 
Sbjct: 343 KKEFITPYNFVGGY-KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNF 401

Query: 153 AIRKISDTG-VTTIAGGKWSRG------VGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVI 204
            +RK++  G V+T AG   S         G  DG   E A+F +   +VY        V 
Sbjct: 402 CVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVH 461

Query: 205 DRGNQAIREIQL 216
           D+    IR I +
Sbjct: 462 DQVGHTIRTISM 473

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 76.1 bits (186), Expect = 6e-15
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 25/124 (20%)

Query: 83  MEPFSVAVSPSGELLVLDSENNSRPKL--------VAGSPE-------GYYGHVDGRPRG 127
           ++          +   +D  N    K+         AG            +G  DG  R 
Sbjct: 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLRE 439

Query: 128 -ARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAK 185
            AR     GL  DD     Y+ D +   IR IS      +AG +        + P +++ 
Sbjct: 440 VARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDE--------NIPEDEST 491

Query: 186 FSND 189
             ++
Sbjct: 492 VESN 495

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 17/172 (9%), Positives = 39/172 (22%), Gaps = 22/172 (12%)

Query: 64  IKFEGGYTVETVFEGSKFGME-PFSVAVSPSGELLVLDSEN-------------NSRPKL 109
           I  +    + +    +        S+A +   E    ++E              +    +
Sbjct: 167 IDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYI 225

Query: 110 VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIADTMNMAIRKIS-DTGVTTIAG 167
           +  + +G +         A      G  +    G +Y        + ++       TI  
Sbjct: 226 IKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN 285

Query: 168 G-----KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 214
           G                    A  S +F +    +          N      
Sbjct: 286 GGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS 337

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 80.0 bits (198), Expect = 5e-17
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 28/161 (17%)

Query: 54  PKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGS 113
           P  + + +S      G TV   F G  F + P  VAV  +G + V       R   +A  
Sbjct: 2   PSWSPTQAS------GQTVLP-FTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATG 54

Query: 114 PEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRG 173
                           +  P+GLAVD  G +Y+ D  N  +   + +   T+        
Sbjct: 55  -----STGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF----- 104

Query: 174 VGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 214
                        +    +  V +  ++ V DRGN  + ++
Sbjct: 105 ----------DGLNYPEGLA-VDTQGAVYVADRGNNRVVKL 134

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 29/166 (17%)

Query: 65  KFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGR 124
           K   G   +TV   +    +P  VAV  SG + V D++NN   KL     E     V   
Sbjct: 133 KLAAGSKTQTVLPFTGLN-DPDGVAVDNSGNVYVTDTDNNRVVKL---EAESNNQVVLP- 187

Query: 125 PRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI-SDTGVTTIAGGKWSRGVGHVDGPSED 183
                +  P G+AVD+ G +Y+ +     + K+ + +  +T+           ++ P   
Sbjct: 188 --FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF------TGLNTPLA- 238

Query: 184 AKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTF 229
                    V V S  ++ V DRGN  + ++        +++    
Sbjct: 239 ---------VAVDSDRTVYVADRGNDRVVKL-----TSLEHHHHHH 270

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 77.3 bits (191), Expect = 5e-16
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 25/152 (16%)

Query: 64  IKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDG 123
           +K   G T  TV   +    +P  +AV  +G + V D  N         + +        
Sbjct: 49  VKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP---- 103

Query: 124 RPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSE 182
                 +N+P+GLAVD +G +Y+AD  N  + K++  +   T+                 
Sbjct: 104 ---FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-------------- 146

Query: 183 DAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 214
               ++   V  V +S ++ V D  N  + ++
Sbjct: 147 -TGLNDPDGVA-VDNSGNVYVTDTDNNRVVKL 176

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 21/144 (14%)

Query: 71  TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARM 130
                ++    G  P  + +     L   +++NNS   +   +  G              
Sbjct: 134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS---IGRITNTGKLEEYPL---PTNA 187

Query: 131 NHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDF 190
             P G+   + G ++  + M   I +I+ TG  +               P          
Sbjct: 188 AAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIP-----TPNARPHA-------- 234

Query: 191 DVVYVGSSCSLLVIDRGNQAIREI 214
             +  G +  +   + G   I  I
Sbjct: 235 --ITAGKNSEIWFTEWGANQIGRI 256

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 23/142 (16%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHP 133
             FE      +   + VS  G++   ++  N   KL   S +G +            + P
Sbjct: 53  KEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKL---SKKGGFTEYPL---PQPDSGP 106

Query: 134 KGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDV 192
            G+     G+I+        I K++ D  +                      K S    +
Sbjct: 107 YGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDL---------------PNKGSYPAFI 151

Query: 193 VYVGSSCSLLVIDRGNQAIREI 214
             +GS  +L   +  N +I  I
Sbjct: 152 T-LGSDNALWFTENQNNSIGRI 172

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 17/145 (11%), Positives = 47/145 (32%), Gaps = 23/145 (15%)

Query: 71  TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARM 130
              T +   +    P+ +    +G++       +   ++   + +G     D   +G+  
Sbjct: 92  GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGD---RIGKLTADGTIYEYDLPNKGSY- 147

Query: 131 NHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSND 189
             P  + +     ++  +  N +I +I++TG +             +   P         
Sbjct: 148 --PAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLP------TNAAAPVG------- 192

Query: 190 FDVVYVGSSCSLLVIDRGNQAIREI 214
              +  G+  +L  ++     I  I
Sbjct: 193 ---ITSGNDGALWFVEIMGNKIGRI 214

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 23/131 (17%)

Query: 85  PFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNI 144
           P+ +  S  G++     + N   K+ +    G     +     A+      L V   G+I
Sbjct: 22  PYGITSSEDGKVWFTQHKAN---KISSLDQSGRIKEFEVPTPDAK---VMCLIVSSLGDI 75

Query: 145 YIADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLV 203
           +  +     I K+S   G T                       S  + +   G +  +  
Sbjct: 76  WFTENGANKIGKLSKKGGFTEYPLP---------------QPDSGPYGIT-EGLNGDIWF 119

Query: 204 IDRGNQAIREI 214
                  I ++
Sbjct: 120 TQLNGDRIGKL 130

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 6/91 (6%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHP 133
             +        P  +     G L  ++   N   ++         G +           P
Sbjct: 179 EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT------GEISEYDIPTPNARP 232

Query: 134 KGLAVDDRGNIYIADTMNMAIRKISDTGVTT 164
             +       I+  +     I +I++     
Sbjct: 233 HAITAGKNSEIWFTEWGANQIGRITNDNTIQ 263

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 17/141 (12%), Positives = 41/141 (29%), Gaps = 21/141 (14%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHP 133
             +E    G  P  + +     L   +++NN+  ++   +  G              + P
Sbjct: 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI---TESGDITEFKI---PTPASGP 185

Query: 134 KGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV 193
            G+   +   ++  + +   I +I+ +G  T                            +
Sbjct: 186 VGITKGNDDALWFVEIIGNKIGRITTSGEITEFKI--PTPNARPHA-------------I 230

Query: 194 YVGSSCSLLVIDRGNQAIREI 214
             G+   L   + G   I  +
Sbjct: 231 TAGAGIDLWFTEWGANKIGRL 251

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 23/142 (16%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHP 133
           T +       +   + +S  GE+   ++  N   ++   + +G              + P
Sbjct: 48  TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRI---TKKGIIKEYTL---PNPDSAP 101

Query: 134 KGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDV 192
            G+     G+I+  +     I +I+D G +                      K S    +
Sbjct: 102 YGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELP---------------NKGSYPSFI 146

Query: 193 VYVGSSCSLLVIDRGNQAIREI 214
             +GS  +L   +  N AI  I
Sbjct: 147 T-LGSDNALWFTENQNNAIGRI 167

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 21/130 (16%)

Query: 85  PFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNI 144
           P+ + VS  G++ +   + N    +   + +G    +   P          L +   G +
Sbjct: 17  PYGITVSDKGKVWITQHKANMISCI---NLDG---KITEYPLPTPDAKVMCLTISSDGEV 70

Query: 145 YIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI 204
           +  +     I +I+  G+                 P+     S  + +   G +  +   
Sbjct: 71  WFTENAANKIGRITKKGIIKE-----------YTLPNP---DSAPYGIT-EGPNGDIWFT 115

Query: 205 DRGNQAIREI 214
           +     I  I
Sbjct: 116 EMNGNRIGRI 125

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 8/91 (8%), Positives = 24/91 (26%), Gaps = 6/91 (6%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHP 133
           T F+       P  +       L  ++   N   ++         G +           P
Sbjct: 174 TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS------GEITEFKIPTPNARP 227

Query: 134 KGLAVDDRGNIYIADTMNMAIRKISDTGVTT 164
             +      +++  +     I +++   +  
Sbjct: 228 HAITAGAGIDLWFTEWGANKIGRLTSNNIIE 258

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 74  TVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHP 133
           T F+       P ++      +L   +   N   +L +         ++  P   +   P
Sbjct: 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN------NIIEEYPIQIKSAEP 269

Query: 134 KGLAVDDRGNIYIADTMNMAIRKISDTGVTT 164
            G+  D    I+ A   +  I K++      
Sbjct: 270 HGICFDG-ETIWFAMECD-KIGKLTLIKDNM 298

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 59.1 bits (143), Expect = 9e-10
 Identities = 18/146 (12%), Positives = 38/146 (26%), Gaps = 30/146 (20%)

Query: 77  EGSKFGMEPFSVAVSPSGELLVLDSENN---------------------SRPKLVAGSPE 115
                G +   VA+     L++    ++                         ++   P 
Sbjct: 19  VYLLPG-QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN 77

Query: 116 GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-----VTTIAGGKW 170
                +           P GL++D  GN ++ D     + K+         +      + 
Sbjct: 78  N--AEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP 135

Query: 171 SRGVGHVDGPSEDAKFSNDFDVVYVG 196
                H   P++ A        V+V 
Sbjct: 136 GSDQNHFCQPTDVA-VEPSTGAVFVS 160

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 59.1 bits (143), Expect = 9e-10
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 23/140 (16%)

Query: 85  PFSVAVSPSGELLVLDSENN---------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKG 135
           P  +++   G   V D   +             L+        G             P  
Sbjct: 93  PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNH-----FCQPTD 147

Query: 136 LAVD-DRGNIYIADTM-NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDV 192
           +AV+   G ++++D   N  I + S +G   T  G + S             +FS    +
Sbjct: 148 VAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESS------GSSPRPGQFSVPHSL 201

Query: 193 VYVGSSCSLLVIDRGNQAIR 212
             V     L V DR N  I+
Sbjct: 202 ALVPHLDQLCVADRENGRIQ 221

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 10/101 (9%)

Query: 67  EGGYTVETVFEGSKFGMEPFS------VAVSPSGELLVLDSENNSRPKLVAGSPEGYYGH 120
           +    V  +   S FG   F+         + +G+    D E       V     G    
Sbjct: 226 DTKEFVREIKHAS-FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQ--GFVMNFSSGEIID 282

Query: 121 VDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 161
           V   P     + P  +   + G +YI D     + K + T 
Sbjct: 283 VFK-PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 15/131 (11%)

Query: 85  PFSVAVSPS-GELLVLDSENN--SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR 141
           P S+A+ P   +L V D EN      K           H         +++  G      
Sbjct: 198 PHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257

Query: 142 GNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL 201
           G  Y  D   +    ++ +    I    +     H D P +          +      ++
Sbjct: 258 GKPYFGDQEPVQGFVMNFSSGEII--DVFKPVRKHFDMPHD----------IVASEDGTV 305

Query: 202 LVIDRGNQAIR 212
            + D     + 
Sbjct: 306 YIGDAHTNTVW 316

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 11/108 (10%), Positives = 23/108 (21%), Gaps = 12/108 (11%)

Query: 116 GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGV- 174
                +D            G+A+D + N+ I    +      S                 
Sbjct: 9   HVEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEE 68

Query: 175 ----------GHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 212
                       +   S    F     +  + +  +  V D     + 
Sbjct: 69  DTILVIDPNNAEILQSSGKNLFYLPHGLS-IDTDGNYWVTDVALHQVF 115

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 78  GSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLA 137
           G+     P  V V   G ++V++ +     +++     G   H  G      +  P G+ 
Sbjct: 116 GATILQHPRGVTVDNKGRIIVVECKVM---RVIIFDQNGNVLHKFGCS--KHLEFPNGVV 170

Query: 138 VDDRGNIYIADTMNMAIRKISDTG--VTTIAG 167
           V+D+  I+I+D     ++  +  G  +  I G
Sbjct: 171 VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG 202

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 24/133 (18%)

Query: 83  MEPFSVAVSPSGELLVL-DSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR 141
           + P  VAV  +   +++ +     +  +   +  G +    G      + HP+G+ VD++
Sbjct: 77  LYPNRVAVVRNSGDIIVTERSPTHQ--IQIYNQYGQFVRKFGATI---LQHPRGVTVDNK 131

Query: 142 GNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC 199
           G I + +   M +      G  +    G        H++ P+           V V    
Sbjct: 132 GRIIVVECKVMRVIIFDQNGNVLHKF-GCS-----KHLEFPN----------GVVVNDKQ 175

Query: 200 SLLVIDRGNQAIR 212
            + + D     ++
Sbjct: 176 EIFISDNRAHCVK 188

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 24/141 (17%)

Query: 71  TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARM 130
            V   F  SK    P  V V+   E+ + D+  +        + EG Y    G       
Sbjct: 152 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF---NYEGQYLRQIGGEG--IT 206

Query: 131 NHPKGLAVDDRGNIYIADTMNMA-IRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFS 187
           N+P G+ ++  G I IAD  N   +   +  G  ++ +                +     
Sbjct: 207 NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK------VKHAQCFD----- 255

Query: 188 NDFDVVYVGSSCSLLVIDRGN 208
                V +    S+++  +  
Sbjct: 256 -----VALMDDGSVVLASKDY 271

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 16/68 (23%), Positives = 29/68 (42%)

Query: 129 RMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSN 188
           +   P G+AV+ + +I +ADT N  I+     G      G+  +    +  P+  A   N
Sbjct: 28  QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN 87

Query: 189 DFDVVYVG 196
             D++   
Sbjct: 88  SGDIIVTE 95

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 28/144 (19%)

Query: 77  EGSKFGM--EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGR--PRGARMNH 132
            G   G   EP  VAV+   +++V D+ N+   ++     EG +    G    R +++ +
Sbjct: 22  FGVMEGQFTEPSGVAVNAQNDIIVADTNNH---RIQIFDKEGRFKFQFGECGKRDSQLLY 78

Query: 133 PKGLAVDDRGN--IYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSN 188
           P  +AV       I    +    I+  +  G  V          G   +  P        
Sbjct: 79  PNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF-------GATILQHPRG------ 125

Query: 189 DFDVVYVGSSCSLLVIDRGNQAIR 212
               V V +   ++V++     + 
Sbjct: 126 ----VTVDNKGRIIVVECKVMRVI 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 52/464 (11%), Positives = 108/464 (23%), Gaps = 139/464 (29%)

Query: 35  IVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGS-KFGMEPFSV-AVSP 92
           +  + VS  ++  W+L    +  V      KF     VE V   + KF M P       P
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQ-----KF-----VEEVLRINYKFLMSPIKTEQRQP 105

Query: 93  SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA-DTMN 151
           S    +   +   R +L   +      +V    R       +   ++ R    +  D + 
Sbjct: 106 SMMTRMYIEQ---RDRLYNDNQVFAKYNV---SRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 152 ------MAIRKISDTGVTTIAGGK--WSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL-- 201
                 +A+       V      K  W   + + + P    +           +  S   
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 202 ------LVIDRGNQAIREIQLH----------DDDCSDNYDDTFHLGIFVLVAAAFFGYM 245
                 L I      +R +              +  +    + F+L   +L+        
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-------- 270

Query: 246 LALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPLVPTEDDFEKPE-EGFFG 304
                       +++             V  +     +    L          E +    
Sbjct: 271 ------------TTRF----------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 305 ---------------SIGRLVLNTGSTVGEIFGGLFSMFRRKPVHYQRQHQYQQRNVPPS 349
                          +     L   S + E         R     +     ++  N    
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRL---SIIAE-------SIRDGLATWDN---WKHVNCDKL 355

Query: 350 TWHMQESYVIPDEDEPPPLETRTPTPKKSYHPYTI--KDL-----------------DKR 390
           T  ++ S      +   P E R     K +   ++                      D  
Sbjct: 356 TTIIESSL-----NVLEPAEYR-----KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 391 QYTKQ--SKSYYNGWEVDYH---HGQQQQMPIHHQQQQHHHRQF 429
               +    S       +          ++ +  + +   HR  
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 67  EGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPR 126
           +G   +    EG     +   +A + +G+L+      +S P +     +G    +   P 
Sbjct: 61  DGNQQIHATVEG-----KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD 115

Query: 127 GARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 161
              +N   G+          AD+   AI  I    
Sbjct: 116 AIFLN---GITPLSDTQYLTADSYRGAIWLIDVVQ 147

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Length = 255

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 5/139 (3%)

Query: 19  FSSVSASTPPAKIVAGIVSNVVSALVKWLWSLK-DSPKTAVSSSSMIKFEGGYTVETVFE 77
              +      +    G      S      W  K  +P      + ++     +  +    
Sbjct: 107 LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL 166

Query: 78  GSKFGMEPFS-VAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRG--ARMNHP 133
             +F ++  S    +     LLVL  E+ +  ++           +    RG    +   
Sbjct: 167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQA 226

Query: 134 KGLAVDDRGNIYIADTMNM 152
           +G+A+D  GNIYI    N 
Sbjct: 227 EGVAMDASGNIYIVSEPNR 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	495
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.78
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.76
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.72
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.64
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.62
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.61
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.58
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.58
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.58
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.57
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.56
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.56
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.56
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.54
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.54
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.53
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.52
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.52
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.52
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.5
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.43
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.36
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.35
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.34
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.34
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.33
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.32
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.29
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.19
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.16
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.15
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.1
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.08
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.06
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.06
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.05
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.05
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.04
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.03
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.02
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.02
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.97
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.94
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.91
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.91
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.82
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.81
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.79
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.78
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.74
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.73
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.71
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.65
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.6
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.59
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.58
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.46
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.44
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.4
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.37
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.35
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.31
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.21
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.17
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.14
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.14
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.13
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.12
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.07
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.01
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.84
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.83
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.61
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.61
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.57
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.56
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.55
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.52
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.45
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.43
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.4
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.34
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.34
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.26
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.26
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.25
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.13
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.13
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.1
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.1
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.08
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.08
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.07
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.95
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.8
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	96.74
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.7
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.67
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.57
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.54
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.42
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.41
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.36
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.33
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.32
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.3
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.2
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.98
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.92
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.37
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	95.29
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.25
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.09
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.97
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.86
3ow8_A	321	WD repeat-containing protein 61; structural genomi	94.76
3ow8_A	321	WD repeat-containing protein 61; structural genomi	94.61
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.42
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.01
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	93.94
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	93.88
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	93.83
4a2l_A	795	BT_4663, two-component system sensor histidine kin	93.75
2ece_A	462	462AA long hypothetical selenium-binding protein;	93.65
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	93.56
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	93.39
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	93.32
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	93.16
3v9f_A	781	Two-component system sensor histidine kinase/RESP	93.01
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	92.31
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	92.28
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.19
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	91.99
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	91.29
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	91.24
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	90.62
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	90.32
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	90.3
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	90.24
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	90.07
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	89.72
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	89.62
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	89.4
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	89.15
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	88.6
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	88.5
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	87.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	87.94
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	87.64
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	87.61
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	87.43
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	86.98
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	86.76
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	86.31
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	86.17
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	86.04
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	85.85
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	85.34
3ott_A	758	Two-component system sensor histidine kinase; beta	84.99
3ott_A	758	Two-component system sensor histidine kinase; beta	84.82
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	84.6
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	83.23
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	83.14
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	82.91
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	82.8
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	82.77
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	81.75
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	81.69
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	81.49
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	81.02
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	80.99
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	80.77
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	80.23
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	80.11

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=3.3e-20  Score=199.17  Aligned_cols=140  Identities=25%  Similarity=0.317  Sum_probs=113.8

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEE-cCCC------------CccccccCCCcCccccCCcc-eEEEc-------C
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLV-AGSP------------EGYYGHVDGRPRGARMNHPK-GLAVD-------D  140 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~iv-aGs~------------~g~~G~~dG~~~~a~f~~P~-GIAVD-------~  140 (495)
                      ..|.+||++++|+ |||+|+.+|++.++- .+..            .+..|+.||.+..++|+.|. |+++|       .
T Consensus       310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~  389 (496)
T 3kya_A          310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE  389 (496)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSC
T ss_pred             CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccC
Confidence            4699999999998 899999999666642 2211            14456667878889999999 89998       6


Q ss_pred             CCCEEEEECCCCEEEEEcCCC-cEEEecCcc------cCCCCCCCC-CCcCcccCCCceEEEECC-CCeEEEEECCCCeE
Q 011014          141 RGNIYIADTMNMAIRKISDTG-VTTIAGGKW------SRGVGHVDG-PSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAI  211 (495)
Q Consensus       141 dGnIYVAD~~N~rIrk~d~~G-V~tiaGg~~------G~~~g~~dG-~~~~a~f~~P~gVa~vd~-~G~LyVaD~gN~rI  211 (495)
                      +|+|||||+.|||||+|+++| ++|++|...      +..+|+.+| ++..++|+.|.+|+ ++. +|+|||+|.+|+||
T Consensus       390 ~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa-vd~~~g~lyVaD~~N~rI  468 (496)
T 3kya_A          390 EYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV-YDDVKEMFYVHDQVGHTI  468 (496)
T ss_dssp             CEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE-EETTTTEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEE-EECCCCEEEEEeCCCCEE
Confidence            899999999999999999999 899998532      122366677 78899999999999 566 49999999999999


Q ss_pred             EEEECCCCceee
Q 011014          212 REIQLHDDDCSD  223 (495)
Q Consensus       212 ~~~d~~g~~~~~  223 (495)
                      |+|+++++.|.-
T Consensus       469 rki~~~~~~~~~  480 (496)
T 3kya_A          469 RTISMEQEENVA  480 (496)
T ss_dssp             EEEEECCCC---
T ss_pred             EEEECCCCcccc
Confidence            999999988753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.78  E-value=7.5e-18  Score=177.46  Aligned_cols=167  Identities=14%  Similarity=0.098  Sum_probs=124.9

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCc--cccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEE
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEG--YYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKI  157 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g--~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~  157 (495)
                      +..|.+|++|+ +|+|||+|..++++.++-..+...  .... .+     ....+.+||+|++|+ |||+|..+++|+++
T Consensus       227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~-~~-----~~~~~~~ia~dpdG~~LYvad~~~~~I~~~  300 (433)
T 4hw6_A          227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM-MD-----TKGSNFHIVWHPTGDWAYIIYNGKHCIYRV  300 (433)
T ss_dssp             CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE-CS-----CCSSCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec-cC-----CCCCcccEEEeCCCCEEEEEeCCCCEEEEE
Confidence            46899999999 899999999998555443221211  1111 11     123456899999998 99999999999998


Q ss_pred             cCC---C----cEEEecCcccCCCCCCCCCCcCcccCCCceEEEE--------CCCCeEEEEECCCCeEEEEECCCCcee
Q 011014          158 SDT---G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV--------GSSCSLLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       158 d~~---G----V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v--------d~~G~LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                      +.+   +    +.+++|.. +. .|+.+|+...++|+.|.+|+++        +.+|+|||+|++|++|++|+++|....
T Consensus       301 ~~d~~~~~~~~~~~~ag~~-g~-~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t  378 (433)
T 4hw6_A          301 DYNRETGKLAVPYIVCGQH-SS-PGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTT  378 (433)
T ss_dssp             EBCTTTCCBCCCEEEEECT-TC-CCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEE
T ss_pred             eCCCCCcccCcEEEEEecC-CC-CccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEEE
Confidence            854   3    35777642 21 4566788888999999999943        899999999999999999999884433


Q ss_pred             eCCC------------------CCCcceEEEE-ecCcCeEEEEEccCCceEEEee
Q 011014          223 DNYD------------------DTFHLGIFVL-VAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       223 ~~~~------------------~g~P~GIAvd-~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      ..+.                  ...|.|||++ .  .+.+||+|..|+||+++..
T Consensus       379 ~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~--~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          379 YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK--RKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT--TTEEEEEEGGGTEEEEEEE
T ss_pred             EEeCCCCCccccCCCccccccEeCCCcEEEEECC--CCEEEEEeCCCCEEEEEec
Confidence            2110                  1249999999 5  6789999999999988754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.78  E-value=2.5e-18  Score=181.12  Aligned_cols=134  Identities=25%  Similarity=0.356  Sum_probs=107.8

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeeEEEE-cCC-C-----------CccccccCCCcCccccCCcceEEE---------cC
Q 011014           84 EPFSVAVSPSGE-LLVLDSENNSRPKLV-AGS-P-----------EGYYGHVDGRPRGARMNHPKGLAV---------DD  140 (495)
Q Consensus        84 ~P~GIAVd~dG~-LyVaDs~n~~ii~iv-aGs-~-----------~g~~G~~dG~~~~a~f~~P~GIAV---------D~  140 (495)
                      .+.+|+++++|+ |||+|..++++.++- .+. .           .+..|..+|....++|+.|.|||+         |.
T Consensus       274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~  353 (433)
T 4hw6_A          274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED  353 (433)
T ss_dssp             SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred             CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence            567899999998 999999999665543 111 0           133445566666789999999999         99


Q ss_pred             CCCEEEEECCCCEEEEEcCCC-cEEEecCcccCCCCCCCC-CCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 011014          141 RGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDG-PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  217 (495)
Q Consensus       141 dGnIYVAD~~N~rIrk~d~~G-V~tiaGg~~G~~~g~~dG-~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~  217 (495)
                      +|+|||||+.|+||++|+++| +++++|.......|+.+| ....++|+.|.+|++...+|+|||+|.+|+||++|+++
T Consensus       354 ~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          354 EYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            999999999999999999999 888988543222456677 77788999999999533899999999999999999975

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=3.5e-18  Score=183.51  Aligned_cols=177  Identities=14%  Similarity=0.073  Sum_probs=127.8

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEEcC-------CCCc-ccc--ccCC---C-cCccccCCcceEEEcCCCC-EEE
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLVAG-------SPEG-YYG--HVDG---R-PRGARMNHPKGLAVDDRGN-IYI  146 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaG-------s~~g-~~G--~~dG---~-~~~a~f~~P~GIAVD~dGn-IYV  146 (495)
                      ..|.+|++++ +|+|||+|..++.+.++-..       +... ...  ...|   . .....-..|.+||+|++|+ |||
T Consensus       247 ~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYv  326 (496)
T 3kya_A          247 KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYF  326 (496)
T ss_dssp             SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEE
Confidence            5799999999 78999999999865555322       1110 000  0000   0 0001124688999999999 899


Q ss_pred             EECCCCEEEEEcCCC-c------EEEecCcccCCCCCCCCCCcCcccCCCc-eEEEEC-------CCCeEEEEECCCCeE
Q 011014          147 ADTMNMAIRKISDTG-V------TTIAGGKWSRGVGHVDGPSEDAKFSNDF-DVVYVG-------SSCSLLVIDRGNQAI  211 (495)
Q Consensus       147 AD~~N~rIrk~d~~G-V------~tiaGg~~G~~~g~~dG~~~~a~f~~P~-gVa~vd-------~~G~LyVaD~gN~rI  211 (495)
                      ||+.+|+|++++.++ .      ++++|....  .|+.||++..++|+.|. +++ ++       .+|+|||+|++||||
T Consensus       327 aD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~--~G~~DG~~~~a~f~~P~~gv~-vd~~~~~~~~~g~lyVaD~~N~rI  403 (496)
T 3kya_A          327 GVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ--SGYRDDVGTEARMNNPCQGVF-VKNPDYTGEEEYDFYFVDRLNFCV  403 (496)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEEBTTB--CCCBCCBGGGCBCSSEEEEEE-EECTTCCSSCCEEEEEEEGGGTEE
T ss_pred             EeCCCCEEEEEecCCCcceecccEEecCCCCC--CcccCCcccccccCCCeEEEE-EccccccccCCCeEEEEECCCCEE
Confidence            999999999988665 1      577774222  45668999999999999 666 65       689999999999999


Q ss_pred             EEEECCCCceeeCC-------------C-----------CCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCCC
Q 011014          212 REIQLHDDDCSDNY-------------D-----------DTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDP  263 (495)
Q Consensus       212 ~~~d~~g~~~~~~~-------------~-----------~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~~  263 (495)
                      |+|+++|......+             +           ...|.|||+|.. .+.|||+|..||||+++....+.+
T Consensus       404 r~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~-~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          404 RKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV-KEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             EEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT-TTEEEEEETTTTEEEEEEECCCC-
T ss_pred             EEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC-CCEEEEEeCCCCEEEEEECCCCcc
Confidence            99999884432110             0           123999999962 278999999999999988877754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=1.6e-16  Score=158.61  Aligned_cols=214  Identities=18%  Similarity=0.202  Sum_probs=139.2

Q ss_pred             ceeeeeeeeccceEEEEeCCCCce------------------ecCCceeEecC--CceEEEeecCCCCCCCceEEEEcCC
Q 011014           34 GIVSNVVSALVKWLWSLKDSPKTA------------------VSSSSMIKFEG--GYTVETVFEGSKFGMEPFSVAVSPS   93 (495)
Q Consensus        34 ~~~~~ia~a~~~~I~~~d~~t~~~------------------vaG~~i~~~~~--G~~~~~~~~G~~~~~~P~GIAVd~d   93 (495)
                      +.+..++.+..+.+|..+......                  ...+.+..+..  |.....  .+...+..|.+|+++++
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~--~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS--SGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE--ECTTTCSSEEEEEECTT
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec--cCCCccCCceEEEECCC
Confidence            445566666667777766554210                  00112333332  332222  23344568999999999


Q ss_pred             CcEEEEECCCCeeEEEEc-CC--CCcccccc--CCCcCccccCCcceEEEcC-CCCEEEEEC-CCCEEEEEcCCC--cEE
Q 011014           94 GELLVLDSENNSRPKLVA-GS--PEGYYGHV--DGRPRGARMNHPKGLAVDD-RGNIYIADT-MNMAIRKISDTG--VTT  164 (495)
Q Consensus        94 G~LyVaDs~n~~ii~iva-Gs--~~g~~G~~--dG~~~~a~f~~P~GIAVD~-dGnIYVAD~-~N~rIrk~d~~G--V~t  164 (495)
                      |+|||+|..++++.++-. |.  .....+..  .| .....|..|.+||+|+ +|+|||||+ .+++|++|+.+|  +.+
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g-~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG-SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC-CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC-CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEE
Confidence            999999999985444322 22  11112210  11 1135789999999999 899999997 799999999988  333


Q ss_pred             EecCcccCCCCCCCCCCcCcccCCCceEEEECCC-CeEEEEECCCCeEEEEECC-CCceeeC------------------
Q 011014          165 IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS-CSLLVIDRGNQAIREIQLH-DDDCSDN------------------  224 (495)
Q Consensus       165 iaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~-G~LyVaD~gN~rI~~~d~~-g~~~~~~------------------  224 (495)
                      + +. .+.     ......+.|..|.+|+ ++++ |+|||+|.++++|++|+++ |......                  
T Consensus       181 ~-~~-~g~-----~~~~~~~~~~~p~gia-~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~  252 (329)
T 3fvz_A          181 W-GE-ESS-----GSSPRPGQFSVPHSLA-LVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGF  252 (329)
T ss_dssp             E-CE-ECC-----SSSCCTTEESCEEEEE-EETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTE
T ss_pred             e-cc-CCC-----CCCCCCcccCCCcEEE-EECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCE
Confidence            3 21 111     0112346789999999 5665 9999999999999999998 4332110                  


Q ss_pred             ------------------------------------CCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCC
Q 011014          225 ------------------------------------YDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       225 ------------------------------------~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                                                          .....|.+|+++.  .+.+||++..++||+++..+.
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~--dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE--DGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT--TSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC--CCCEEEEECCCCEEEEEeCCc
Confidence                                                1122488999986  458999999999997665543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=2e-17  Score=173.87  Aligned_cols=168  Identities=15%  Similarity=0.060  Sum_probs=125.2

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCc-cccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEc
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEG-YYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKIS  158 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g-~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d  158 (495)
                      +..|.+|++++ +|+|||+|..++++.++-...... ....      ......|.|||+|++|+ |||+|..+++|++|+
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~------~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~  298 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT------IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSD  298 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE------CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE------cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEe
Confidence            46899999999 899999999999655554322111 1111      01225799999999999 999999999999999


Q ss_pred             CCC-------cEEEecCcccCCCCCCCCCCcCcccCCCc-eEEEE-------CCCCeEEEEECCCCeEEEEECCCCceee
Q 011014          159 DTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDF-DVVYV-------GSSCSLLVIDRGNQAIREIQLHDDDCSD  223 (495)
Q Consensus       159 ~~G-------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~-gVa~v-------d~~G~LyVaD~gN~rI~~~d~~g~~~~~  223 (495)
                      .++       +.+++|.. +. .|+.+|....++|+.|. ++++.       |.+|+|||+|++|++|++|+++|.....
T Consensus       299 ~d~~~~~~~~~~~~ag~~-g~-~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~  376 (430)
T 3tc9_A          299 YDWKTKRLTTPYIVCGQQ-GA-KDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTF  376 (430)
T ss_dssp             EETTTTEECCCEEEEECT-TC-BCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEE
T ss_pred             CCcccccccceEEEeccC-CC-CCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEE
Confidence            664       45677642 11 34557777788999999 77733       5679999999999999999998854332


Q ss_pred             CC-------C-----------CCCcceEEEEecCcCeEEEEEccCCceEEEee
Q 011014          224 NY-------D-----------DTFHLGIFVLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       224 ~~-------~-----------~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      .+       +           ...|.|||++. ..+++||+|..|+||+++..
T Consensus       377 ~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~-~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          377 AGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE-ERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EECCTTSSSSCBCEETTTTCBCSSEEEEEEET-TTTEEEEEEGGGTEEEEEEE
T ss_pred             EeCCCCCCCcccCCCchhhcEeCCCcEEEEEC-CCCEEEEEECCCCeEEEEcc
Confidence            11       1           12599999995 24689999999999988754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=5.1e-17  Score=170.70  Aligned_cols=133  Identities=29%  Similarity=0.420  Sum_probs=105.5

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEE-cCCC------------CccccccCCCcCccccCCcc-eEEE--------c
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLV-AGSP------------EGYYGHVDGRPRGARMNHPK-GLAV--------D  139 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~iv-aGs~------------~g~~G~~dG~~~~a~f~~P~-GIAV--------D  139 (495)
                      ..|.+|+++++|+ |||+|..++++.++- .+..            .+..|..+|....++|+.|. |+++        |
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D  349 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS  349 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence            4799999999999 999999999555542 2220            12334445555678999999 9999        4


Q ss_pred             CCCCEEEEECCCCEEEEEcCCC-cEEEecCcc-cCCCCCCCC-CCcCcccCCCceEEEECC-CCeEEEEECCCCeEEEEE
Q 011014          140 DRGNIYIADTMNMAIRKISDTG-VTTIAGGKW-SRGVGHVDG-PSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREIQ  215 (495)
Q Consensus       140 ~dGnIYVAD~~N~rIrk~d~~G-V~tiaGg~~-G~~~g~~dG-~~~~a~f~~P~gVa~vd~-~G~LyVaD~gN~rI~~~d  215 (495)
                      ++|+|||||++|+||++|+++| +.+++|... +. .|+.+| +...++|+.|.+|++ ++ +|.|||+|.+|+||++|+
T Consensus       350 ~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~-~G~~dG~~~~~~~~~~P~giav-d~~~g~lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          350 DEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGT-SGYNDGDLRQEARFNHPEGIVY-DEERECFFIGDRENRRIRKIG  427 (430)
T ss_dssp             CCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSS-SSCBCEETTTTCBCSSEEEEEE-ETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCC-CcccCCCchhhcEeCCCcEEEE-ECCCCEEEEEECCCCeEEEEc
Confidence            6799999999999999999999 888887422 22 355566 678889999999994 65 799999999999999999


Q ss_pred             CC
Q 011014          216 LH  217 (495)
Q Consensus       216 ~~  217 (495)
                      ++
T Consensus       428 ~e  429 (430)
T 3tc9_A          428 YE  429 (430)
T ss_dssp             EC
T ss_pred             cC
Confidence            76

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.72  E-value=1.4e-16  Score=165.91  Aligned_cols=167  Identities=17%  Similarity=0.167  Sum_probs=122.6

Q ss_pred             CCCCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCc-cccc--cCCCcCccccCCcc-eEEEcC-CCCEEEEECCCCEE
Q 011014           81 FGMEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEG-YYGH--VDGRPRGARMNHPK-GLAVDD-RGNIYIADTMNMAI  154 (495)
Q Consensus        81 ~~~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g-~~G~--~dG~~~~a~f~~P~-GIAVD~-dGnIYVAD~~N~rI  154 (495)
                      .+..|.+|++++ +|+|||+|. ++.+.++-..+... ....  ..+    ..-..|. +|++|+ +|+|||+|..+++|
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g----~~~~~P~~~ia~~p~~g~lyv~d~~~~~I  291 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSG----SLGTNPGPYLIYYFVDSNFYMSDQNLSSV  291 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCS----CCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred             hcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccC----CCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence            346899999999 899999886 44344443222111 1100  011    1123477 999999 68999999999999


Q ss_pred             EEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC-CCCeEEEEECCCCceee-CCC-----
Q 011014          155 RKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHDDDCSD-NYD-----  226 (495)
Q Consensus       155 rk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~-gN~rI~~~d~~g~~~~~-~~~-----  226 (495)
                      ++++.+| +.+++|....  .|+.+|....++|+.|.+|+ ++++|+|||+|. +|++|++|++....+.+ .+.     
T Consensus       292 ~~~~~~g~~~~~~g~~~~--~g~~dg~~~~~~~~~P~gia-~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g  368 (409)
T 3hrp_A          292 YKITPDGECEWFCGSATQ--KTVQDGLREEALFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVAS  368 (409)
T ss_dssp             EEECTTCCEEEEEECTTC--CSCBCEEGGGCBCSSEEEEE-ECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBS
T ss_pred             EEEecCCCEEEEEeCCCC--CCcCCCcccccEeCCCeEEE-EeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCC
Confidence            9999888 7777764311  45667777788999999999 789999999999 99999999944333332 111     


Q ss_pred             ----------CCCcceEEEEecCcCeEEEEEccCCceEEEe
Q 011014          227 ----------DTFHLGIFVLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       227 ----------~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                                ...|.|||++.  .+.+||++..++||+++.
T Consensus       369 ~~~g~~~~~~~~~P~giavd~--~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          369 QIDGTPLEATFNYPYDICYDG--EGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             CCCBSTTTCCBSSEEEEEECS--SSEEEEEESTTCEEEEEE
T ss_pred             cCCCChhceEeCCceEEEEcC--CCCEEEEECCCCeEEEEE
Confidence                      23599999997  479999999999998864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.71  E-value=2.7e-16  Score=163.72  Aligned_cols=132  Identities=25%  Similarity=0.372  Sum_probs=105.3

Q ss_pred             CCce-EEEEcC-CCcEEEEECCCCeeEEEEc-CCCC------ccccccCCCcCccccCCcceEEEcCCCCEEEEEC-CCC
Q 011014           83 MEPF-SVAVSP-SGELLVLDSENNSRPKLVA-GSPE------GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT-MNM  152 (495)
Q Consensus        83 ~~P~-GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~------g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~-~N~  152 (495)
                      ..|. +|++++ +|+|||+|..++++.++-. |...      +..|..+|....++|+.|.|||+|++|+|||||+ .|+
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~  345 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY  345 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence            4577 999999 6999999999995544321 2110      1234445555567899999999999999999999 999


Q ss_pred             EEEEEc-CCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 011014          153 AIRKIS-DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  217 (495)
Q Consensus       153 rIrk~d-~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~  217 (495)
                      +|++|+ .+| +.+++|....  .|+.+|....++|+.|.+|+ ++.+|+|||+|.+|++|++|+++
T Consensus       346 ~I~~~~~~~G~v~~~~g~~~~--~g~~~g~~~~~~~~~P~gia-vd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          346 CLRKLDILDGYVSTVAGQVDV--ASQIDGTPLEATFNYPYDIC-YDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEEEEETTTTEEEEEEECTTC--BSCCCBSTTTCCBSSEEEEE-ECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EEEEEECCCCEEEEEeCCCCC--CCcCCCChhceEeCCceEEE-EcCCCCEEEEECCCCeEEEEEeC
Confidence            999999 888 7888874322  45667777888999999999 68889999999999999999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.70  E-value=6.2e-16  Score=154.29  Aligned_cols=165  Identities=15%  Similarity=0.168  Sum_probs=119.7

Q ss_pred             CCCCceEEEEcCCCcEEEEECCCCe-----------------------eEEEEcCCCCccccccCCCcCccccCCcceEE
Q 011014           81 FGMEPFSVAVSPSGELLVLDSENNS-----------------------RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLA  137 (495)
Q Consensus        81 ~~~~P~GIAVd~dG~LyVaDs~n~~-----------------------ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIA  137 (495)
                      .+..|.+||+|++|+|||+|..+++                       .+.++.... +..-...   ....|..|.|||
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~---~~~~~~~p~gia   97 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-AEILQSS---GKNLFYLPHGLS   97 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-CCEEEEE---CTTTCSSEEEEE
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-CeEEecc---CCCccCCceEEE
Confidence            4568999999999999999998852                       233433210 1110001   124688999999


Q ss_pred             EcCCCCEEEEECCCCEEEEEcCCC----cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECC-CCeEEEEEC-CCCeE
Q 011014          138 VDDRGNIYIADTMNMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDR-GNQAI  211 (495)
Q Consensus       138 VD~dGnIYVAD~~N~rIrk~d~~G----V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~-~G~LyVaD~-gN~rI  211 (495)
                      +|++|+|||+|..+++|++++.+|    +.++ +.. +. .|     .....|..|.+|+ +++ +|+|||+|. .+++|
T Consensus        98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~-~~~-~~-~g-----~~~~~~~~P~~ia-~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLIL-GRS-MQ-PG-----SDQNHFCQPTDVA-VEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCSSCCSEEE-SBT-TB-CC-----CSTTCCSSEEEEE-ECTTTCCEEEEECSSCCEE
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEe-ccc-CC-CC-----CCccccCCCcEEE-EeCCCCeEEEEeCCCCCeE
Confidence            999999999999999999999887    3444 211 11 11     1235788999999 576 899999996 89999


Q ss_pred             EEEECCCCceeeCC-----------CCCCcceEEEEecCcCeEEEEEccCCceEEEeeC
Q 011014          212 REIQLHDDDCSDNY-----------DDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       212 ~~~d~~g~~~~~~~-----------~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                      ++|+.+|..+....           ....|.||+++.. ++.+||++..++||+.+-..
T Consensus       169 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          169 VQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETT
T ss_pred             EEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECC
Confidence            99999998765422           1124999999962 37899999999999654443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.64  E-value=5.5e-14  Score=143.31  Aligned_cols=149  Identities=17%  Similarity=0.116  Sum_probs=115.3

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCC-CEEEEEc
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN-MAIRKIS  158 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N-~rIrk~d  158 (495)
                      ..|.|||+|. +|+||++|..++++..+-. |.....       .....+..|.|||+|+ +|.||++|..+ ++|.+++
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~-------l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV-------LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE-------EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            5799999996 7899999999884444322 221111       1123578999999997 78899999998 9999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIF  234 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIA  234 (495)
                      .+|  ..++..                ..+..|++|++...++.||++|..+++|.+++++|.....  ....+.|.||+
T Consensus       189 ~dG~~~~~~~~----------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gia  252 (349)
T 3v64_C          189 MDGSGRRIIAD----------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT  252 (349)
T ss_dssp             TTSCSCEESCC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred             CCCCCcEEEEE----------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEE
Confidence            888  333311                1367899999544789999999999999999999966432  34466899999


Q ss_pred             EEecCcCeEEEEEccCCceEEEe
Q 011014          235 VLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      ++   ...+|++++.+++|.++.
T Consensus       253 v~---~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          253 VF---EDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EE---TTEEEEEETTTTEEEEEE
T ss_pred             EE---CCEEEEecCCCCeEEEEE
Confidence            96   578999999999997665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.62  E-value=7.1e-14  Score=144.36  Aligned_cols=148  Identities=17%  Similarity=0.137  Sum_probs=115.0

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEEc--CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCC-CEEEEE
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN-MAIRKI  157 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~iva--Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N-~rIrk~  157 (495)
                      ..|.|||+|+ +|+||++|..+++ +.++.  |.....       .....|..|.|||+|+ .|.||++|..+ ++|.++
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~-I~~~~~dg~~~~~-------l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~  230 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSR-IEVANLDGAHRKV-------LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS  230 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTE-EEECBTTSCSCEE-------EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCe-EEEEeCCCCceEE-------eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence            5799999996 7899999999884 44432  221111       1123578999999996 77899999998 999999


Q ss_pred             cCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceE
Q 011014          158 SDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGI  233 (495)
Q Consensus       158 d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GI  233 (495)
                      +.+|  ..++..                ..+..|++|++...++.|||+|..+++|++++++|.....  ....+.|.||
T Consensus       231 ~~dG~~~~~~~~----------------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gi  294 (386)
T 3v65_B          231 SMDGSGRRIIAD----------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI  294 (386)
T ss_dssp             ETTSCSCEEEEC----------------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEE
T ss_pred             eCCCCCcEEEEE----------------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEE
Confidence            9888  444422                1366899999644789999999999999999999866432  3446689999


Q ss_pred             EEEecCcCeEEEEEccCCceEEEe
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      +++   ...+|++++.+++|.++.
T Consensus       295 av~---~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          295 TVF---EDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEE---TTEEEEEETTTTEEEEEE
T ss_pred             EEE---CCEEEEeeCCCCeEEEEE
Confidence            996   568999999999997665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.62  E-value=1e-13  Score=140.11  Aligned_cols=150  Identities=16%  Similarity=0.093  Sum_probs=115.0

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECC-CCEEEEEc
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM-NMAIRKIS  158 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~-N~rIrk~d  158 (495)
                      ..|.|||+|. +|+||++|..++++..+-. |......       ....+..|.|||+|+ .|.||++|.+ +++|.+++
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-------~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~  151 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  151 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE-------EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence            4799999996 8899999999884443322 2211111       124678999999997 6889999976 79999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIF  234 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIA  234 (495)
                      .+|  ..++..                ..+..|++|++...++.||++|..+++|.+++++|.....  ....+.|.||+
T Consensus       152 ~dG~~~~~~~~----------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla  215 (318)
T 3sov_A          152 MDGSSRFIIIN----------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT  215 (318)
T ss_dssp             TTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE
T ss_pred             cCCCCeEEEEE----------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE
Confidence            988  444421                1367899999644689999999999999999999866543  33566899999


Q ss_pred             EEecCcCeEEEEEccCCceEEEee
Q 011014          235 VLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      ++   +..+|+++..+++|..+.-
T Consensus       216 v~---~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          216 LF---EDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             EE---TTEEEEEETTTTEEEEEET
T ss_pred             Ee---CCEEEEEecCCCeEEEEEC
Confidence            98   4689999999999965543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.61  E-value=1.7e-13  Score=142.43  Aligned_cols=151  Identities=13%  Similarity=0.071  Sum_probs=115.2

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECC-CCEEEEEc
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM-NMAIRKIS  158 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~-N~rIrk~d  158 (495)
                      +..|.|||||. .++||++|..++++ .++.-.+.....     .....|..|.|||+|+ .|.||++|.+ +++|.+++
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I-~~~~~~g~~~~~-----l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~  231 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTV-SVADTKGVKRKT-----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  231 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEE-EEECTTTCSEEE-----EEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred             CCCcccEEEEecCCceEEEECCCCeE-EEEeCCCCceEE-----EEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence            35899999997 89999999999844 444322111000     1123678999999997 7889999987 58999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC----CCCCCcce
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN----YDDTFHLG  232 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~----~~~g~P~G  232 (495)
                      .+|  ..++..                ..+..|++|++...++.||++|..+++|++++++|......    .....|.|
T Consensus       232 ~dG~~~~~~~~----------------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~g  295 (400)
T 3p5b_L          232 LNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  295 (400)
T ss_dssp             TTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEE
T ss_pred             CCCCccEEEEE----------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEE
Confidence            988  444421                13679999996557899999999999999999999765431    23457999


Q ss_pred             EEEEecCcCeEEEEEccCCceEEEe
Q 011014          233 IFVLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       233 IAvd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      |+++   +..+|++|+.+++|..+.
T Consensus       296 l~v~---~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          296 LAVF---EDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EEEE---TTEEEEEESSSCSEEEEE
T ss_pred             EEEe---CCEEEEecCCCCeEEEEE
Confidence            9997   568999999999996664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.61  E-value=1.7e-13  Score=137.28  Aligned_cols=150  Identities=14%  Similarity=0.080  Sum_probs=113.7

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCC-CEEEEE
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN-MAIRKI  157 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N-~rIrk~  157 (495)
                      +..|.|||+|. +|+||++|..++++..+-. |......       ....+..|.|||+|+ .|.||++|.++ ++|.++
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-------~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~  148 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  148 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE-------EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEE
Confidence            35799999995 7899999999885443321 2211111       113578999999997 78899999986 899999


Q ss_pred             cCCC-c-EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC----CCCCCcc
Q 011014          158 SDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN----YDDTFHL  231 (495)
Q Consensus       158 d~~G-V-~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~----~~~g~P~  231 (495)
                      +.+| . .++..                ..+..|++|++...++.||++|..+++|.+++++|......    ...+.|.
T Consensus       149 ~~dG~~~~~~~~----------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~  212 (316)
T 1ijq_A          149 GLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF  212 (316)
T ss_dssp             ETTSCCEEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEE
T ss_pred             cCCCCCeEEEEE----------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcE
Confidence            9888 3 33321                14678999996546889999999999999999999665431    2345799


Q ss_pred             eEEEEecCcCeEEEEEccCCceEEEe
Q 011014          232 GIFVLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       232 GIAvd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      ||+++   +..+|+++..+++|..+.
T Consensus       213 giav~---~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          213 SLAVF---EDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             EEEEE---TTEEEEEETTTTEEEEEE
T ss_pred             EEEEE---CCEEEEEECCCCeEEEEe
Confidence            99998   478999999999996554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=1.5e-13  Score=130.43  Aligned_cols=149  Identities=22%  Similarity=0.229  Sum_probs=113.3

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCCc
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGV  162 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~GV  162 (495)
                      ..|.+|+++++|+|||+|..++.+..+..++......      ....+..|.+|++|++|+|||+|..+++|.+++.++.
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            5799999999999999998877555553333211110      1234678999999999999999999999999998772


Q ss_pred             EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCC--CCCcceEEEEecCc
Q 011014          163 TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYD--DTFHLGIFVLVAAA  240 (495)
Q Consensus       163 ~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~--~g~P~GIAvd~~a~  240 (495)
                      ......              ...+..|.+|+ ++.+|+|||++..+++|.++++++........  ...|.+|+++.  .
T Consensus       182 ~~~~~~--------------~~~~~~p~~i~-~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~--~  244 (270)
T 1rwi_B          182 NQVVLP--------------FTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS--D  244 (270)
T ss_dssp             CEEECC--------------CSSCCSEEEEE-ECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT--T
T ss_pred             ceEeec--------------ccCCCCceEEE-ECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC--C
Confidence            221110              11246899999 78899999999999999999999876654332  34699999996  4


Q ss_pred             CeEEEEEccCCceE
Q 011014          241 FFGYMLALLQRRVQ  254 (495)
Q Consensus       241 ~~~yv~d~~~~Rv~  254 (495)
                      +.+|+++..+++|.
T Consensus       245 g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          245 RTVYVADRGNDRVV  258 (270)
T ss_dssp             CCEEEEEGGGTEEE
T ss_pred             CCEEEEECCCCEEE
Confidence            57999999999994

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.58  E-value=4.9e-13  Score=128.94  Aligned_cols=150  Identities=17%  Similarity=0.156  Sum_probs=111.5

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECC--CCEEEEE
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM--NMAIRKI  157 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~--N~rIrk~  157 (495)
                      ..|.+|++|+ .|+|||+|..++++..+-. |......       ....+..|.+|++|+ .|+|||+|..  +++|.++
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~-------~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE-------EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence            5899999998 5789999998885444322 2211111       112467899999998 6889999987  7899999


Q ss_pred             cCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceEE
Q 011014          158 SDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIF  234 (495)
Q Consensus       158 d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIA  234 (495)
                      +.+|  ..++..                ..+..|.+|++....+.|||+|..+++|.+|++++..... ......|.||+
T Consensus       152 ~~dg~~~~~~~~----------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~  215 (267)
T 1npe_A          152 HMDGTNRRILAQ----------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVT  215 (267)
T ss_dssp             ETTSCCCEEEEC----------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEE
T ss_pred             ecCCCCcEEEEE----------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEE
Confidence            9887  333321                1356899999544468999999999999999999865432 23456799999


Q ss_pred             EEecCcCeEEEEEccCCceEEEee
Q 011014          235 VLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      ++   +..+||++..+++|..+-.
T Consensus       216 ~d---~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          216 SY---GKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             EE---TTEEEEEETTTTEEEEEET
T ss_pred             Ee---CCEEEEEECCCCeEEEEeC
Confidence            98   4789999999999954433

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.58  E-value=2.7e-13  Score=130.61  Aligned_cols=150  Identities=15%  Similarity=0.231  Sum_probs=113.2

Q ss_pred             CCCceEEEE-cCCCcEEEEECC-CCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014           82 GMEPFSVAV-SPSGELLVLDSE-NNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        82 ~~~P~GIAV-d~dG~LyVaDs~-n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~  159 (495)
                      +..|.+|++ +++|+|||++.. ++ .+.++.....-....     ....+..|.+|++|++|+|||+|..+++|++++.
T Consensus        76 ~~~p~~i~~~~~~g~l~v~~~~~~~-~i~~~d~~g~~~~~~-----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  149 (286)
T 1q7f_A           76 LLYPNRVAVVRNSGDIIVTERSPTH-QIQIYNQYGQFVRKF-----GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ  149 (286)
T ss_dssp             BSSEEEEEEETTTTEEEEEECGGGC-EEEEECTTSCEEEEE-----CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             ccCceEEEEEcCCCeEEEEcCCCCC-EEEEECCCCcEEEEe-----cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC
Confidence            357999999 589999999975 55 555554222111000     1124678999999999999999999999999998


Q ss_pred             CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCC---CCcceEE
Q 011014          160 TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD---TFHLGIF  234 (495)
Q Consensus       160 ~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~---g~P~GIA  234 (495)
                      +|  +.++ +.              ...+..|.+|+ ++.+|+|||+|..+++|+++++++..+......   ..|.+|+
T Consensus       150 ~g~~~~~~-~~--------------~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~  213 (286)
T 1q7f_A          150 NGNVLHKF-GC--------------SKHLEFPNGVV-VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVG  213 (286)
T ss_dssp             TSCEEEEE-EC--------------TTTCSSEEEEE-ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEE
T ss_pred             CCCEEEEe-CC--------------CCccCCcEEEE-ECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEE
Confidence            88  3333 11              12356799999 788999999999999999999998876553333   4699999


Q ss_pred             EEecCcCeEEEEEccCC-ceEE
Q 011014          235 VLVAAAFFGYMLALLQR-RVQA  255 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~-Rv~~  255 (495)
                      ++.  .+.+||++..++ +|..
T Consensus       214 ~d~--~G~l~v~~~~~~~~i~~  233 (286)
T 1q7f_A          214 INS--NGEILIADNHNNFNLTI  233 (286)
T ss_dssp             ECT--TCCEEEEECSSSCEEEE
T ss_pred             ECC--CCCEEEEeCCCCEEEEE
Confidence            997  568999999886 8843

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.58  E-value=2.6e-13  Score=153.21  Aligned_cols=150  Identities=14%  Similarity=0.094  Sum_probs=113.7

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCC-CEEEEE
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN-MAIRKI  157 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N-~rIrk~  157 (495)
                      +..|.|||||. .++||++|..++++.++-. |......       ....|..|.|||||+ .|.|||+|.++ ++|.++
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l-------~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEE-------EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence            45899999997 4589999999985444322 2211111       123578899999998 58999999986 899999


Q ss_pred             cCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC----CCCCCcc
Q 011014          158 SDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN----YDDTFHL  231 (495)
Q Consensus       158 d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~----~~~g~P~  231 (495)
                      +.+|  +.++..                ..|..|++|++...++.|||+|..+++|++++++|......    .....|.
T Consensus       543 ~~dG~~~~~lv~----------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~  606 (791)
T 3m0c_C          543 GLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF  606 (791)
T ss_dssp             ETTSCCEEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEE
T ss_pred             ecCCCceEEEEe----------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCC
Confidence            9988  344421                24679999996558899999999999999999999775432    2233578


Q ss_pred             eEEEEecCcCeEEEEEccCCceEEEe
Q 011014          232 GIFVLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       232 GIAvd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      ||+++   +..||++|..+++|.++.
T Consensus       607 glav~---~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          607 SLAVF---EDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             EEEEE---TTEEEEEETTTTEEEEEE
T ss_pred             EEEEe---CCEEEEEECCCCEEEEEe
Confidence            88886   568999999999997664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.58  E-value=2.9e-13  Score=137.93  Aligned_cols=156  Identities=13%  Similarity=0.059  Sum_probs=119.4

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEc
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKIS  158 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d  158 (495)
                      +..|.+|++|+ ++.||++|..++++.++.. |+.....       ....+..|.|||+|. .|+||++|..+++|.+++
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~  144 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN  144 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE-------EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence            34799999995 7889999999886655542 2211111       123467899999996 788999999999999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceeeC--CCCCCcceE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSDN--YDDTFHLGI  233 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~~g~~~~~~--~~~g~P~GI  233 (495)
                      .+|  ..++..                ..+..|.+|++...+|.||++|.++ ++|.+++++|......  .....|.||
T Consensus       145 ~dG~~~~~l~~----------------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl  208 (349)
T 3v64_C          145 LDGAHRKVLLW----------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL  208 (349)
T ss_dssp             TTSCSCEEEEC----------------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEE
T ss_pred             CCCCceEEEEe----------------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceE
Confidence            888  344421                2367899999544689999999998 9999999999776543  345579999


Q ss_pred             EEEecCcCeEEEEEccCCceEEEeeCCC
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                      |+|.. +..+|++|..+++|..+-.+..
T Consensus       209 a~d~~-~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          209 TIDYA-GRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EEETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred             EEeCC-CCEEEEEECCCCEEEEEeCCCC
Confidence            99952 5789999999999976665543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.57  E-value=2.3e-13  Score=140.50  Aligned_cols=155  Identities=13%  Similarity=0.069  Sum_probs=118.5

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEc
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKIS  158 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d  158 (495)
                      +..|.||++|+ ++.||++|..++++.++.. |+.....       ....+..|.|||+|. .|+||++|..+++|.+++
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~  187 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN  187 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE-------ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE-------EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence            34799999995 7889999999886655542 2211111       123567899999996 788999999999999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceee--CCCCCCcceE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSD--NYDDTFHLGI  233 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~~g~~~~~--~~~~g~P~GI  233 (495)
                      .+|  ..++..                ..+..|.+|++...+|.||++|.++ ++|.+++++|.....  ......|.||
T Consensus       188 ~dg~~~~~l~~----------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl  251 (386)
T 3v65_B          188 LDGAHRKVLLW----------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL  251 (386)
T ss_dssp             TTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             CCCCceEEeec----------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeE
Confidence            888  344421                2367899999554789999999998 999999999976544  3445579999


Q ss_pred             EEEecCcCeEEEEEccCCceEEEeeCC
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                      |+|.. +..+|++|..+++|..+-.+.
T Consensus       252 avd~~-~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          252 TIDYA-GRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEGG-GTEEEEEETTTTEEEEECTTS
T ss_pred             EEeCC-CCEEEEEECCCCEEEEEeCCC
Confidence            99942 578999999999996665544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.56  E-value=4.3e-13  Score=147.49  Aligned_cols=151  Identities=13%  Similarity=0.144  Sum_probs=116.9

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEc--CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCC-CEEEE
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN-MAIRK  156 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~iva--Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N-~rIrk  156 (495)
                      +..|.|||||. .++||++|..++++ .++.  |+.....       ....|+.|.+||+|+ +|.||++|.++ .+|.+
T Consensus       391 ~~~p~GlAvD~~~~~lY~tD~~~~~I-~v~~~~G~~~~~l-------~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r  462 (619)
T 3s94_A          391 IAHPDGIAVDWVARNLYWTDTGTDRI-EVTRLNGTMRKIL-------ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIER  462 (619)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEE-EEEETTSCSCEEE-------ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CCCcCceEEecccCcEEEEeCCCCcE-EEEeCCCCeEEEE-------EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEE
Confidence            35899999996 78999999998844 4442  3221111       123689999999998 59999999875 89999


Q ss_pred             EcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcce
Q 011014          157 ISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLG  232 (495)
Q Consensus       157 ~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~G  232 (495)
                      ++.+|  ..++..                ..|..|+||++...++.||++|.++++|.+++++|.....  ......|.|
T Consensus       463 ~~~dG~~~~~l~~----------------~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~g  526 (619)
T 3s94_A          463 AALDGSDRVVLVN----------------TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFG  526 (619)
T ss_dssp             EETTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCC
T ss_pred             EccCCCccEEEEe----------------CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEE
Confidence            99888  444421                2477999999655689999999999999999999977543  345567999


Q ss_pred             EEEEecCcCeEEEEEccCCceEEEeeC
Q 011014          233 IFVLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       233 IAvd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                      ||++   +..+|++|..+++|..+--.
T Consensus       527 lav~---~~~ly~tD~~~~~I~~~~k~  550 (619)
T 3s94_A          527 FTLL---GDYVYWTDWQRRSIERVHKR  550 (619)
T ss_dssp             EEEE---TTEEEEECTTSSCEEEEESS
T ss_pred             EEEE---CCEEEEeecCCCeEEEEEcC
Confidence            9998   45899999999999665433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.56  E-value=2.9e-13  Score=140.66  Aligned_cols=161  Identities=16%  Similarity=0.081  Sum_probs=119.3

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEc
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKIS  158 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d  158 (495)
                      +..|.+|++|+ ++.||++|..++++.++.. |.. . .+. ........+..|.|||+|. .++||++|..+++|.+++
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~-~-~~~-~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~  187 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH-G-VSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  187 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CC-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCC-C-CCc-ceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEe
Confidence            35899999997 7889999999986555532 211 0 000 0011123578999999997 789999999999999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC-CCeEEEEECCCCceee--CCCCCCcceE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSD--NYDDTFHLGI  233 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g-N~rI~~~d~~g~~~~~--~~~~g~P~GI  233 (495)
                      .+|  ..++..                ..+..|.+|++....|.||++|.+ +++|.+++++|.....  ......|.||
T Consensus       188 ~~g~~~~~l~~----------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~gl  251 (400)
T 3p5b_L          188 TKGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  251 (400)
T ss_dssp             TTTCSEEEEEE----------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             CCCCceEEEEe----------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEE
Confidence            888  344421                136789999965568999999987 5899999999977543  3445679999


Q ss_pred             EEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      |+|.. +..+|++|..+++|..+-.+...
T Consensus       252 avd~~-~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          252 TLDLL-SGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             EEETT-TTEEEEEETTTTEEEEEETTSCC
T ss_pred             EEEeC-CCEEEEEECCCCEEEEEeCCCCc
Confidence            99953 56899999999999766655443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.56  E-value=4.2e-13  Score=134.44  Aligned_cols=159  Identities=15%  Similarity=0.052  Sum_probs=117.3

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEc
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKIS  158 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d  158 (495)
                      +..|.||++|+ ++.||++|..++++.++-. |...+..   ........+..|.|||+|. .|+|||+|..+++|.+++
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~---~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~  105 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  105 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc---cEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence            35799999997 5789999999885555532 2100000   0001123578999999995 788999999999999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceee--CCCCCCcceE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSD--NYDDTFHLGI  233 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~~g~~~~~--~~~~g~P~GI  233 (495)
                      .+|  ..++..                ..+..|.+|++...+|.||++|.++ ++|.+++++|.....  ......|.||
T Consensus       106 ~~g~~~~~~~~----------------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gl  169 (316)
T 1ijq_A          106 TKGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  169 (316)
T ss_dssp             TTSSSEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             CCCCceEEEEE----------------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEE
Confidence            888  344421                1356899999544689999999986 899999999977543  2345679999


Q ss_pred             EEEecCcCeEEEEEccCCceEEEeeCC
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                      ++|.. +..+|++|..+++|..+-.+.
T Consensus       170 a~d~~-~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          170 TLDLL-SGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEETT-TTEEEEEETTTTEEEEEETTS
T ss_pred             EEecc-CCEEEEEECCCCeEEEEecCC
Confidence            99952 568999999999997666554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.54  E-value=3.2e-13  Score=130.06  Aligned_cols=155  Identities=18%  Similarity=0.229  Sum_probs=116.1

Q ss_pred             CCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCC--CccccccCCCcCccccCCcceEEE-cCCCCEEEEECC-CCEEEE
Q 011014           81 FGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSP--EGYYGHVDGRPRGARMNHPKGLAV-DDRGNIYIADTM-NMAIRK  156 (495)
Q Consensus        81 ~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~--~g~~G~~dG~~~~a~f~~P~GIAV-D~dGnIYVAD~~-N~rIrk  156 (495)
                      .+..|.+|+++++|+|||+|..++ .+.++....  ....+. .+ .....+..|.+|++ +++|+|||+|.. +++|++
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~-~i~~~d~~g~~~~~~~~-~~-~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNH-RIQIFDKEGRFKFQFGE-CG-KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGT-EEEEECTTSCEEEEECC-BS-SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCC-EEEEECCCCcEEEEecc-cC-CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            346899999999999999998887 444443222  111111 11 12346788999999 589999999975 899999


Q ss_pred             EcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC---CCCCCcc
Q 011014          157 ISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN---YDDTFHL  231 (495)
Q Consensus       157 ~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~---~~~g~P~  231 (495)
                      ++.+|  +.++ +.               ..+..|.+|+ ++.+|+|||+|..+++|+++++++......   .....|.
T Consensus       105 ~d~~g~~~~~~-~~---------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~  167 (286)
T 1q7f_A          105 YNQYGQFVRKF-GA---------------TILQHPRGVT-VDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPN  167 (286)
T ss_dssp             ECTTSCEEEEE-CT---------------TTCSCEEEEE-ECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEE
T ss_pred             ECCCCcEEEEe-cC---------------ccCCCceEEE-EeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcE
Confidence            99888  3333 11               1356799999 688999999999999999999998766543   3334699


Q ss_pred             eEEEEecCcCeEEEEEccCCceEEEe
Q 011014          232 GIFVLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       232 GIAvd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      +|+++.  .+.+||++..+++|..+-
T Consensus       168 ~i~~~~--~g~l~v~~~~~~~i~~~~  191 (286)
T 1q7f_A          168 GVVVND--KQEIFISDNRAHCVKVFN  191 (286)
T ss_dssp             EEEECS--SSEEEEEEGGGTEEEEEE
T ss_pred             EEEECC--CCCEEEEECCCCEEEEEc
Confidence            999997  567999999999995543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.54  E-value=4.2e-13  Score=151.56  Aligned_cols=161  Identities=15%  Similarity=0.056  Sum_probs=119.8

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcCC-CCEEEEECCCCEEEEEc
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIADTMNMAIRKIS  158 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~d-GnIYVAD~~N~rIrk~d  158 (495)
                      +..|.+|++|. ++.||++|..++++.++.. |..  ..+. ........|..|.|||||.. ++|||+|..+++|++++
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~--~~~~-~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH--GVSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCC--CCcc-eeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence            45799999997 7889999999885555432 211  0000 01112236889999999975 58999999999999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceee--CCCCCCcceE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSD--NYDDTFHLGI  233 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~~g~~~~~--~~~~g~P~GI  233 (495)
                      .+|  +.++..                ..|..|.+|++....|.||++|.++ ++|.+++++|.....  ......|.||
T Consensus       500 ldG~~~~~l~~----------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GL  563 (791)
T 3m0c_C          500 TKGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  563 (791)
T ss_dssp             TTSSSEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             CCCCeEEEEEe----------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEE
Confidence            888  344422                1366899999655679999999987 899999999987654  3344579999


Q ss_pred             EEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      |||.. ...||++|..+++|..+-.+...
T Consensus       564 avD~~-~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          564 TLDLL-SGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEETT-TTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEecC-CCeEEEEeCCCCcEEEEecCCCc
Confidence            99952 57899999999999776665544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.53  E-value=1.6e-12  Score=123.36  Aligned_cols=150  Identities=25%  Similarity=0.255  Sum_probs=111.2

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      +..|.+|+++++|+|||++. ++ .+..+..........     ....+..|.+|++|++|+|||+|..+++|.+++...
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~-~i~~~d~~~~~~~~~-----~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  138 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NN-RVVTLAAGSNNQTVL-----PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS  138 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TT-EEEEECTTCSCCEEC-----CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred             cCCcceeEECCCCCEEEEcC-CC-EEEEEeCCCceEeee-----ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC
Confidence            35799999999999999998 55 444443221111000     112457899999999999999999999999997554


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC--CCCCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YDDTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~--~~~g~P~GIAvd~~  238 (495)
                       ......               ...+..|.+|+ ++.+|+|||+|..+++|.++++++......  .....|.+|+++. 
T Consensus       139 ~~~~~~~---------------~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-  201 (270)
T 1rwi_B          139 KTQTVLP---------------FTGLNDPDGVA-VDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-  201 (270)
T ss_dssp             CSCEECC---------------CCSCCSCCCEE-ECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-
T ss_pred             ceeEeec---------------cccCCCceeEE-EeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-
Confidence             222210               12356799999 688999999999999999999998776543  2335699999996 


Q ss_pred             CcCeEEEEEccCCceEEE
Q 011014          239 AAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv~~~  256 (495)
                       .+.+||++..+++|..+
T Consensus       202 -~g~l~v~~~~~~~v~~~  218 (270)
T 1rwi_B          202 -AGTVYVTEHNTNQVVKL  218 (270)
T ss_dssp             -TCCEEEEETTTSCEEEE
T ss_pred             -CCCEEEEECCCCcEEEE
Confidence             45899999999999544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.52  E-value=6.3e-13  Score=128.16  Aligned_cols=152  Identities=13%  Similarity=0.068  Sum_probs=113.0

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEcCC
Q 011014           84 EPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISDT  160 (495)
Q Consensus        84 ~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~~  160 (495)
                      .|.+|++|+ +++||++|..++.+.++-. |......       ....+..|.+|++|+ .|+|||+|..+++|.+++.+
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-------~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~  109 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI-------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD  109 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE-------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE-------EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence            699999998 5789999998885544432 2211110       112567999999998 57899999999999999988


Q ss_pred             C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC--CCeEEEEECCCCceee--CCCCCCcceEE
Q 011014          161 G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG--NQAIREIQLHDDDCSD--NYDDTFHLGIF  234 (495)
Q Consensus       161 G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g--N~rI~~~d~~g~~~~~--~~~~g~P~GIA  234 (495)
                      |  ..++..                ..+..|.+|++...++.|||+|.+  +++|.+++++|.....  ......|.||+
T Consensus       110 g~~~~~~~~----------------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia  173 (267)
T 1npe_A          110 GTQRRVLFD----------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLT  173 (267)
T ss_dssp             SCSCEEEEC----------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEE
T ss_pred             CCCEEEEEE----------------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEE
Confidence            7  344421                125689999954447999999987  7899999999876433  23456799999


Q ss_pred             EEecCcCeEEEEEccCCceEEEeeC
Q 011014          235 VLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                      ++. .+..+|+++..+++|..+-.+
T Consensus       174 ~d~-~~~~lyv~d~~~~~I~~~~~~  197 (267)
T 1npe_A          174 FDA-FSSQLCWVDAGTHRAECLNPA  197 (267)
T ss_dssp             EET-TTTEEEEEETTTTEEEEEETT
T ss_pred             EcC-CCCEEEEEECCCCEEEEEecC
Confidence            996 246899999999999655443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.52  E-value=1.6e-12  Score=143.28  Aligned_cols=150  Identities=12%  Similarity=0.143  Sum_probs=115.2

Q ss_pred             CCCceEEEEcCC-CcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCC--EEEEE
Q 011014           82 GMEPFSVAVSPS-GELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNM--AIRKI  157 (495)
Q Consensus        82 ~~~P~GIAVd~d-G~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~--rIrk~  157 (495)
                      +..|.|||+|.. ++||++|+.++ .+.+..-.+  ..-   .......+..|.+||+|+ +|.||++|.+++  +|.++
T Consensus       388 ~~~p~glAvD~~~~nLY~td~~~~-~I~v~~~~G--~~~---~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~  461 (628)
T 4a0p_A          388 EIQPYDLSIDIYSRYIYWTCEATN-VINVTRLDG--RSV---GVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERA  461 (628)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTT-EEEEEETTS--CEE---EEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred             cCCcceEEeeccCCeEEEEcCCCC-EEEEEECCC--CeE---EEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEE
Confidence            458999999984 78999999888 444432221  110   001123578999999999 899999999987  79999


Q ss_pred             cCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC--CCCCCcceE
Q 011014          158 SDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YDDTFHLGI  233 (495)
Q Consensus       158 d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~--~~~g~P~GI  233 (495)
                      +.+|  ..++..                ..+..|++|++...++.||++|..+++|.+++++|......  .....|.||
T Consensus       462 ~~dG~~~~~l~~----------------~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~gl  525 (628)
T 4a0p_A          462 ALDGTEREVLFF----------------SGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGL  525 (628)
T ss_dssp             ETTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             eCCCCCcEEEEe----------------ccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEE
Confidence            9988  455522                13679999996555789999999999999999999776543  345579999


Q ss_pred             EEEecCcCeEEEEEccCCceEEE
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                      |++   +..+|++|..+++|..+
T Consensus       526 av~---~~~ly~tD~~~~~i~~~  545 (628)
T 4a0p_A          526 TVF---ENWLYWIDKQQQMIEKI  545 (628)
T ss_dssp             EEE---TTEEEEEETTTTEEEEE
T ss_pred             EEE---CCEEEEEECCCCeEEEE
Confidence            998   47999999999999543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.52  E-value=2e-12  Score=142.42  Aligned_cols=148  Identities=16%  Similarity=0.115  Sum_probs=114.5

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEE-cCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECC-CCEEEEEc
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM-NMAIRKIS  158 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~iv-aGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~-N~rIrk~d  158 (495)
                      ..|.|||||. .|+||++|..++++..+- .|+.....       ....|..|.+||+|+ +|.||++|.+ +.+|.+++
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l-------~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~  152 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL-------VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA  152 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE-------ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE-------EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence            4799999996 688999999998444432 23221111       124678999999997 8999999987 88999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFV  235 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAv  235 (495)
                      .+|  +.++..                 .+..|++|++...++.||++|..+++|.+++++|..... ......|.||++
T Consensus       153 ~dG~~~~~l~~-----------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav  215 (628)
T 4a0p_A          153 MDGSERTTLVP-----------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQ  215 (628)
T ss_dssp             TTSCSCEEEEC-----------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEE
T ss_pred             CCCCceEEEEC-----------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEE
Confidence            888  555531                 256899999655579999999999999999999965533 334557999999


Q ss_pred             EecCcCeEEEEEccCCceEEEe
Q 011014          236 LVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       236 d~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      +   +..+|++|+.+++|..+-
T Consensus       216 ~---~~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          216 Y---QDYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             E---TTEEEEEETTTTEEEEEE
T ss_pred             E---CCEEEEecCCCCEEEEEE
Confidence            9   468999999999996554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.50  E-value=2.6e-12  Score=129.72  Aligned_cols=155  Identities=13%  Similarity=0.026  Sum_probs=117.6

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEcCC
Q 011014           84 EPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISDT  160 (495)
Q Consensus        84 ~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~~  160 (495)
                      .|.+|++|+ +|.||++|..++++.++.. |+...      .......|..|.|||+|. .|+||++|..+++|.+++.+
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d  109 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD  109 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence            688999987 6889999999886555532 22100      001123577899999996 88999999999999999988


Q ss_pred             C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC-CCeEEEEECCCCceee--CCCCCCcceEEE
Q 011014          161 G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSD--NYDDTFHLGIFV  235 (495)
Q Consensus       161 G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g-N~rI~~~d~~g~~~~~--~~~~g~P~GIAv  235 (495)
                      |  ..++..                ..+..|.+|++....|.||++|.+ +++|.+++++|.....  ......|.|||+
T Consensus       110 G~~~~~l~~----------------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglav  173 (318)
T 3sov_A          110 GSLRKVLFW----------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTL  173 (318)
T ss_dssp             SCSCEEEEC----------------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             CCcEEEEEe----------------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEE
Confidence            8  344421                236789999955468999999986 7999999999976543  344567999999


Q ss_pred             EecCcCeEEEEEccCCceEEEeeCCC
Q 011014          236 LVAAAFFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       236 d~~a~~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                      |.. +..+|++|..+++|..+-.+..
T Consensus       174 d~~-~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          174 DYE-EQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             ETT-TTEEEEEETTTTEEEEEETTSC
T ss_pred             ecc-CCEEEEEECCCCEEEEEcCCCC
Confidence            952 5689999999999977666543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.50  E-value=9.7e-13  Score=144.66  Aligned_cols=159  Identities=19%  Similarity=0.180  Sum_probs=122.5

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEc
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKIS  158 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d  158 (495)
                      +..|.+|++|+ +|.||++|..++++.++.. |+.....       ....+..|.|||+|. .++||++|..+++|.+++
T Consensus       348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v-------~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~  420 (619)
T 3s94_A          348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFV-------VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR  420 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEE-------EECCCCCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence            35799999997 7889999998886655542 3221111       123578999999996 788999999999999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceee--CCCCCCcceE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSD--NYDDTFHLGI  233 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~~g~~~~~--~~~~g~P~GI  233 (495)
                      .+|  ..++..                ..|..|.+|++.+..|.||++|.++ .+|.+++++|.....  ......|.||
T Consensus       421 ~~G~~~~~l~~----------------~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~Gl  484 (619)
T 3s94_A          421 LNGTMRKILIS----------------EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGL  484 (619)
T ss_dssp             TTSCSCEEEEC----------------TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             CCCCeEEEEEE----------------CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeee
Confidence            888  445532                1478999999655579999999875 899999999976543  3456689999


Q ss_pred             EEEecCcCeEEEEEccCCceEEEeeCCCCCc
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMFSSKDDPR  264 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~~~~~  264 (495)
                      |+|.. ...||++|..++||..+..+....+
T Consensus       485 alD~~-~~~LY~aD~~~~~I~~~~~dG~~~~  514 (619)
T 3s94_A          485 ALDYD-EGKIYWGDAKTDKIEVMNTDGTGRR  514 (619)
T ss_dssp             EEETT-TTEEEEEETTTTEEEEEESSSCCCE
T ss_pred             EEccc-CCEEEEEECCCCEEEEEecCCCceE
Confidence            99963 5689999999999987776655433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=4.3e-11  Score=114.22  Aligned_cols=151  Identities=11%  Similarity=0.125  Sum_probs=112.5

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      ...|.+|+++++|+|||++..++.+..+ ....  ..-...   ....+..|.+|++|++|+|||++..+++|.+++.+|
T Consensus       103 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~-~~~g--~~~~~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g  176 (300)
T 2qc5_A          103 DSGPYGITEGLNGDIWFTQLNGDRIGKL-TADG--TIYEYD---LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTG  176 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEE-CTTS--CEEEEE---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC
T ss_pred             CCCCccceECCCCCEEEEccCCCeEEEE-CCCC--CEEEcc---CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCC
Confidence            3579999999999999999877744443 3221  111000   011356899999999999999999999999999877


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAvd~~  238 (495)
                       +..+..               ...+..|.+|+ ++.+|+|||++..+++|.++++++.....  ......|.+|+++. 
T Consensus       177 ~~~~~~~---------------~~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-  239 (300)
T 2qc5_A          177 KLEEYPL---------------PTNAAAPVGIT-SGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGK-  239 (300)
T ss_dssp             CEEEEEC---------------SSTTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECS-
T ss_pred             cEEEeeC---------------CCCCCCcceEE-ECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECC-
Confidence             433321               11246789998 68899999999999999999997765543  22345699999996 


Q ss_pred             CcCeEEEEEccCCceEEE
Q 011014          239 AAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv~~~  256 (495)
                       .+.+|+++..+++|..+
T Consensus       240 -~g~l~v~~~~~~~i~~~  256 (300)
T 2qc5_A          240 -NSEIWFTEWGANQIGRI  256 (300)
T ss_dssp             -TTCEEEEETTTTEEEEE
T ss_pred             -CCCEEEeccCCCeEEEE
Confidence             56799999988999544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.43  E-value=3.8e-11  Score=114.57  Aligned_cols=149  Identities=13%  Similarity=0.195  Sum_probs=110.5

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      +..|.+|+++++|+|||++..++.+..+ ....  ......   ....+..|.+|++|++|+|||++..+++|.+++.+|
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~-~~~g--~~~~~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g  218 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRI-TNTG--KLEEYP---LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG  218 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEE-CTTC--CEEEEE---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEE-CCCC--cEEEee---CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC
Confidence            4579999999999999999987744444 2221  111101   112457899999999999999999999999999877


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAvd~~  238 (495)
                       +..+...               ..+..|.+|+ ++.+|+|||++.++++|.+|++++.....  ......|.+|+++. 
T Consensus       219 ~~~~~~~~---------------~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-  281 (300)
T 2qc5_A          219 EISEYDIP---------------TPNARPHAIT-AGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGK-  281 (300)
T ss_dssp             CEEEEECS---------------STTCCEEEEE-ECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECT-
T ss_pred             cEEEEECC---------------CCCCCceEEE-ECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCC-
Confidence             3333210               1246789998 78899999999999999999997765443  22345699999996 


Q ss_pred             CcCeEEEEEccCCceEEE
Q 011014          239 AAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv~~~  256 (495)
                       .+.+|+++. + +|..+
T Consensus       282 -~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          282 -DGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             -TSCEEEECS-S-EEEEE
T ss_pred             -CCCEEEEcc-C-ceEEe
Confidence             567999988 6 88544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.39  E-value=1.2e-12  Score=145.69  Aligned_cols=151  Identities=13%  Similarity=0.072  Sum_probs=110.4

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCC-CEEEEEc
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN-MAIRKIS  158 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N-~rIrk~d  158 (495)
                      +..|.|||||. .|+|||+|..++++ .++...+.....     .....+..|.|||||+ .|.||++|.++ ++|.+++
T Consensus       452 ~~~P~glavD~~~g~LY~tD~~~~~I-~v~d~dg~~~~~-----l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~  525 (699)
T 1n7d_A          452 IQAPDGLAVDWIHSNIYWTDSVLGTV-SVADTKGVKRKT-----LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  525 (699)
T ss_dssp             C--CCCEECCCSSSBCEECCTTTSCE-EEEBSSSCCEEE-----ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred             CCCcceEEEEeeCCcEEEEeccCCeE-EEEecCCCceEE-----EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence            35799999994 78999999988844 444322111000     1123578899999998 68899999876 8999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC----CCCCCcce
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN----YDDTFHLG  232 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~----~~~g~P~G  232 (495)
                      .+|  ..++..                ..|..|++|++....+.|||+|..+++|.+++++|......    ...+.|.|
T Consensus       526 ~dG~~~~~l~~----------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~g  589 (699)
T 1n7d_A          526 LNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  589 (699)
T ss_dssp             SSSCCCCEESC----------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCC
T ss_pred             CCCCCeeEEEe----------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceE
Confidence            887  333311                24678999995335789999999999999999998654432    23457999


Q ss_pred             EEEEecCcCeEEEEEccCCceEEEe
Q 011014          233 IFVLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       233 IAvd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      |+++.   ..+|++++.+++|..+.
T Consensus       590 lavd~---~~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          590 LAVFE---DKVFWTDIINEAIFSAN  611 (699)
T ss_dssp             CEEET---TEEEEECSTTTCEEEEE
T ss_pred             eEEEC---CEEEEEeCCCCeEEEEE
Confidence            99994   58999999999996553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.36  E-value=6.8e-12  Score=124.37  Aligned_cols=143  Identities=13%  Similarity=0.055  Sum_probs=100.2

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCC---------
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN---------  151 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N---------  151 (495)
                      ..|.||++++ +|+|||+|..+. +.. +.-.. +..-..........+..|.+|++|+ +|+|||+|..+         
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~-i~~-~d~~~-g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYH-LSV-VGSEG-GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTE-EEE-ECTTC-EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCC-EEE-EeCCC-CEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence            4799999997 899999998754 433 32111 1100000001123578899999999 99999999763         


Q ss_pred             --------CEEEEEcCC-C-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc
Q 011014          152 --------MAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD  220 (495)
Q Consensus       152 --------~rIrk~d~~-G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~  220 (495)
                              ++|.+++.+ + +..+..                 .+..|++|+ ++++| .|||+|..+++|++|++++..
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~~~~~~~-----------------~~~~p~gia-~~~dg~~lyv~d~~~~~I~~~~~~~~~  218 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKETTLLLK-----------------ELHVPGGAE-VSADSSFVLVAEFLSHQIVKYWLEGPK  218 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTEEEEEEE-----------------EESCCCEEE-ECTTSSEEEEEEGGGTEEEEEESSSTT
T ss_pred             ehcccCCCceEEEEeCCCCEEEEecc-----------------CCccCcceE-ECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence                    679999975 4 343321                 356899999 67776 599999999999999998632


Q ss_pred             e----eeCCCCCCcceEEEEecCcCeEEEEEcc
Q 011014          221 C----SDNYDDTFHLGIFVLVAAAFFGYMLALL  249 (495)
Q Consensus       221 ~----~~~~~~g~P~GIAvd~~a~~~~yv~d~~  249 (495)
                      .    ......| |.||++|.  .+++||++..
T Consensus       219 ~~~~~~~~~~~g-P~gi~~d~--~G~l~va~~~  248 (322)
T 2fp8_A          219 KGTAEVLVKIPN-PGNIKRNA--DGHFWVSSSE  248 (322)
T ss_dssp             TTCEEEEEECSS-EEEEEECT--TSCEEEEEEE
T ss_pred             CCccceEEeCCC-CCCeEECC--CCCEEEEecC
Confidence            1    1112345 99999997  5689999976

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.35  E-value=3.8e-12  Score=141.74  Aligned_cols=161  Identities=15%  Similarity=0.058  Sum_probs=116.0

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEc-CCCCEEEEECCCCEEEEEcC
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVD-DRGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD-~dGnIYVAD~~N~rIrk~d~  159 (495)
                      +..|.+|++++ ++.||++|..++++.++-.....  .+..........|..|.||||| ..|+|||+|..+++|.+++.
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~--~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH--GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  482 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCC--C-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCC--CCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence            45799999997 67899999998866655322100  0000111122357789999999 57899999999999999998


Q ss_pred             CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceee--CCCCCCcceEE
Q 011014          160 TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSD--NYDDTFHLGIF  234 (495)
Q Consensus       160 ~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~~g~~~~~--~~~~g~P~GIA  234 (495)
                      +|  +.++..                ..+..|.+|++....|.||++|.++ ++|.+++++|.....  ......|.|||
T Consensus       483 dg~~~~~l~~----------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGla  546 (699)
T 1n7d_A          483 KGVKRKTLFR----------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  546 (699)
T ss_dssp             SSCCEEEECC----------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEE
T ss_pred             CCCceEEEEe----------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEE
Confidence            88  344421                1356899999433578999999886 899999999866433  23456799999


Q ss_pred             EEecCcCeEEEEEccCCceEEEeeCCC
Q 011014          235 VLVAAAFFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                      +|.. +..||+++..+++|..+-.+..
T Consensus       547 vd~~-~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          547 LDLL-SGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             ECTT-TCCEEEEETTTTEEEEECSSSS
T ss_pred             Eecc-CCEEEEEecCCCeEEEEccCCC
Confidence            9952 4689999999999976665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.34  E-value=4e-10  Score=107.35  Aligned_cols=151  Identities=11%  Similarity=0.172  Sum_probs=110.8

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      ...|.+|+++++|+|||++..++.+..+ ....  ..-...   .......|.+|++|++|+|||++..++.|.+++.+|
T Consensus        98 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~-d~~g--~~~~~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g  171 (299)
T 2z2n_A           98 DSAPYGITEGPNGDIWFTEMNGNRIGRI-TDDG--KIREYE---LPNKGSYPSFITLGSDNALWFTENQNNAIGRITESG  171 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEE-CTTC--CEEEEE---CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC
T ss_pred             CCCceeeEECCCCCEEEEecCCceEEEE-CCCC--CEEEec---CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCC
Confidence            4579999999999999999877744443 2221  111000   011356899999999999999999999999999877


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAvd~~  238 (495)
                       +..+...               ..+..|.+|+ ++.+|.|||++..++.|.++++.+.....  ......|.+|+++. 
T Consensus       172 ~~~~~~~~---------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-  234 (299)
T 2z2n_A          172 DITEFKIP---------------TPASGPVGIT-KGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGA-  234 (299)
T ss_dssp             CEEEEECS---------------STTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECS-
T ss_pred             cEEEeeCC---------------CCCCcceeEE-ECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECC-
Confidence             4433211               1245788998 68889999999999999999996654433  22335699999996 


Q ss_pred             CcCeEEEEEccCCceEEE
Q 011014          239 AAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv~~~  256 (495)
                       .+.+|+++..+++|..+
T Consensus       235 -~g~l~v~~~~~~~i~~~  251 (299)
T 2z2n_A          235 -GIDLWFTEWGANKIGRL  251 (299)
T ss_dssp             -TTCEEEEETTTTEEEEE
T ss_pred             -CCCEEEeccCCceEEEE
Confidence             56799999888999544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.34  E-value=1.2e-11  Score=122.62  Aligned_cols=164  Identities=10%  Similarity=0.099  Sum_probs=113.0

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCC-Cccccc---------cCCC---cCccccCCcceEEEcC-CCCEEEE
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSP-EGYYGH---------VDGR---PRGARMNHPKGLAVDD-RGNIYIA  147 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~-~g~~G~---------~dG~---~~~a~f~~P~GIAVD~-dGnIYVA  147 (495)
                      +..|.+|++|++|++|++|..++++.++-..+. ......         .+|.   .....+..|.||++|+ +|+|||+
T Consensus        18 ~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           18 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             SSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             cCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            357999999999996667777775555422211 111110         0010   0112456899999997 8999999


Q ss_pred             ECCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECC-CCeEEEEECCC----------------
Q 011014          148 DTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGN----------------  208 (495)
Q Consensus       148 D~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~-~G~LyVaD~gN----------------  208 (495)
                      |.. +.|++++.++  +.+++....            ...+..|++|+ ++. +|+|||+|..+                
T Consensus        98 d~~-~~i~~~d~~~g~~~~~~~~~~------------~~~~~~p~~i~-~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~  163 (322)
T 2fp8_A           98 DCY-YHLSVVGSEGGHATQLATSVD------------GVPFKWLYAVT-VDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK  163 (322)
T ss_dssp             ETT-TEEEEECTTCEECEEEESEET------------TEECSCEEEEE-ECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred             ECC-CCEEEEeCCCCEEEEecccCC------------CCcccccceEE-EecCCCEEEEECCcccccccccceehcccCC
Confidence            986 5699999774  566643211            13577899999 688 99999999763                


Q ss_pred             -CeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCC
Q 011014          209 -QAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       209 -~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                       ++|.++++++..+.. ......|.||+++.. +..+||++..++||..+....
T Consensus       164 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d-g~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          164 TGRLIKYDPSTKETTLLLKELHVPGGAEVSAD-SSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             CEEEEEEETTTTEEEEEEEEESCCCEEEECTT-SSEEEEEEGGGTEEEEEESSS
T ss_pred             CceEEEEeCCCCEEEEeccCCccCcceEECCC-CCEEEEEeCCCCeEEEEECCC
Confidence             689999998665443 334457999999962 346999999999997665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.33  E-value=5.4e-10  Score=106.45  Aligned_cols=150  Identities=13%  Similarity=0.185  Sum_probs=108.6

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      +..|.+|+++++|+|||++..++.+..+-. +  +..-...   ....+..|.+|++|++|+|||++..+++|.+++.+|
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~--g~~~~~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g  213 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITE-S--GDITEFK---IPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSG  213 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECT-T--CCEEEEE---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C--CcEEEee---CCCCCCcceeEEECCCCCEEEEccCCceEEEECCCC
Confidence            457999999999999999987774444422 2  1111100   112456899999999999999999999999999877


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAvd~~  238 (495)
                       +..+...               ..+..|.+|+ ++.+|+|||++..+++|.++++++.....  ......|.++++ . 
T Consensus       214 ~~~~~~~~---------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~-  275 (299)
T 2z2n_A          214 EITEFKIP---------------TPNARPHAIT-AGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-D-  275 (299)
T ss_dssp             CEEEEECS---------------STTCCEEEEE-ECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-C-
T ss_pred             cEEEEECC---------------CCCCCceeEE-ECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-c-
Confidence             4333110               1245789998 68899999999999999999997654333  223346999999 4 


Q ss_pred             CcCeEEEEEccCCceEEEe
Q 011014          239 AAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv~~~~  257 (495)
                       .+.+|+++. .+++..+.
T Consensus       276 -~g~l~v~~~-~~~l~~~~  292 (299)
T 2z2n_A          276 -GETIWFAME-CDKIGKLT  292 (299)
T ss_dssp             -SSCEEEEET-TTEEEEEE
T ss_pred             -CCCEEEEec-CCcEEEEE
Confidence             678999987 56775443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.32  E-value=3e-10  Score=112.20  Aligned_cols=156  Identities=13%  Similarity=-0.007  Sum_probs=105.7

Q ss_pred             CCceEEEEcCCCcEEEEECCCCe--eEEEEcCCCC-ccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014           83 MEPFSVAVSPSGELLVLDSENNS--RPKLVAGSPE-GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~--ii~ivaGs~~-g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~  159 (495)
                      ..|.+|+++++|+|||+|..+++  +..+...+.. ......      .....|.|++++.++++||+|..+++|++++.
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~  145 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDV  145 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC------TTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC------CCccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence            37999999999999999976543  4444322211 111110      12456789999888889999999999999997


Q ss_pred             CC----cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC-ce---eeCCCCCCcc
Q 011014          160 TG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD-DC---SDNYDDTFHL  231 (495)
Q Consensus       160 ~G----V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~-~~---~~~~~~g~P~  231 (495)
                      ++    +....+.  .. ..     .....|..|++|.  .+.+.|||+|..+++|++|+.++. ..   ........|.
T Consensus       146 ~~~~~~v~~~~~~--~~-~~-----~~~~~~~~pngis--~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~  215 (306)
T 2p4o_A          146 VQPSGSIWLEHPM--LA-RS-----NSESVFPAANGLK--RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNID  215 (306)
T ss_dssp             TTTEEEEEEECGG--GS-CS-----STTCCSCSEEEEE--EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCS
T ss_pred             CCCcEeEEEECCc--cc-cc-----cccCCCCcCCCcC--cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCC
Confidence            64    2222111  00 00     1123577899983  345689999999999999998852 11   1111235799


Q ss_pred             eEEEEecCcCeEEEEEccCCceEEE
Q 011014          232 GIFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       232 GIAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                      ||++|.  .+++||++..+++|..+
T Consensus       216 gi~vd~--dG~l~va~~~~~~V~~~  238 (306)
T 2p4o_A          216 DFAFDV--EGNLYGATHIYNSVVRI  238 (306)
T ss_dssp             SEEEBT--TCCEEEECBTTCCEEEE
T ss_pred             CeEECC--CCCEEEEeCCCCeEEEE
Confidence            999997  56899999999999554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.29  E-value=2e-10  Score=113.48  Aligned_cols=151  Identities=15%  Similarity=0.050  Sum_probs=105.2

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCC--EEEEEc-C
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM--AIRKIS-D  159 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~--rIrk~d-~  159 (495)
                      ..|.+|+++++|+|||+|..++++.++ .... .......      .-..|.||++|++|+|||||..++  +|.+++ .
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~-d~~g-~~~~~~~------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~  103 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSI-TPDG-NQQIHAT------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS  103 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEE-CTTC-CEEEEEE------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEE-CCCC-ceEEEEe------CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC
Confidence            479999999999999999988855444 3211 1100000      013699999999999999997754  588887 5


Q ss_pred             CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc--ee---------e-CCC
Q 011014          160 TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD--CS---------D-NYD  226 (495)
Q Consensus       160 ~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~--~~---------~-~~~  226 (495)
                      +| +..++...               ....|.+++ +..++.+||+|..+++|+++++++..  +.         . ...
T Consensus       104 ~g~~~~~~~~~---------------~~~~~~g~~-~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~  167 (306)
T 2p4o_A          104 DGTVETLLTLP---------------DAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV  167 (306)
T ss_dssp             TSCEEEEEECT---------------TCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred             CCeEEEEEeCC---------------CccccCccc-ccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence            66 55554321               123467777 57788999999999999999987642  21         0 122


Q ss_pred             CCCcceEEEEecCcCeEEEEEccCCceEEEeeCC
Q 011014          227 DTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       227 ~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                      ...|.||..|   +..+|+++..+++|..+-.+.
T Consensus       168 ~~~pngis~d---g~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          168 FPAANGLKRF---GNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             SCSEEEEEEE---TTEEEEEETTTTEEEEEEBCT
T ss_pred             CCcCCCcCcC---CCEEEEEeCCCCEEEEEEeCC
Confidence            3368999544   568999999999997665544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.19  E-value=8.5e-10  Score=106.93  Aligned_cols=148  Identities=14%  Similarity=0.127  Sum_probs=104.3

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEEC-------------
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT-------------  149 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~-------------  149 (495)
                      ..|.+|+++++|+|||++..++++..+-..+..-.. . ........++.|.+|++|++|+|||+|.             
T Consensus        69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~-~-~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES-I-ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE-E-ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred             CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE-E-eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence            469999999999999999887744443221211100 0 0001123567899999999999999986             


Q ss_pred             ----CCCEEEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC--CCc--
Q 011014          150 ----MNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH--DDD--  220 (495)
Q Consensus       150 ----~N~rIrk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~--g~~--  220 (495)
                          ..++|.+++.+| +..+..                 .+..|.+|+ ++++|.++|+|..+++|++++++  |..  
T Consensus       147 ~~~~~~~~l~~~~~~g~~~~~~~-----------------~~~~~~gi~-~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~  208 (296)
T 3e5z_A          147 EMELPGRWVFRLAPDGTLSAPIR-----------------DRVKPNGLA-FLPSGNLLVSDTGDNATHRYCLNARGETEY  208 (296)
T ss_dssp             CCCSSSCEEEEECTTSCEEEEEC-----------------CCSSEEEEE-ECTTSCEEEEETTTTEEEEEEECSSSCEEE
T ss_pred             cccCCCcEEEEECCCCCEEEeec-----------------CCCCCccEE-ECCCCCEEEEeCCCCeEEEEEECCCCcCcC
Confidence                246899999877 444422                 245788998 68888877999999999999985  332  


Q ss_pred             -e-eeCCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          221 -C-SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       221 -~-~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                       . ......+.|.+|++|.  .+++||+.  +++|.
T Consensus       209 ~~~~~~~~~~~p~~i~~d~--~G~l~v~~--~~~v~  240 (296)
T 3e5z_A          209 QGVHFTVEPGKTDGLRVDA--GGLIWASA--GDGVH  240 (296)
T ss_dssp             EEEEECCSSSCCCSEEEBT--TSCEEEEE--TTEEE
T ss_pred             CCeEeeCCCCCCCeEEECC--CCCEEEEc--CCeEE
Confidence             1 1123456799999997  66899999  77884

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.16  E-value=1.5e-09  Score=110.59  Aligned_cols=171  Identities=12%  Similarity=0.062  Sum_probs=103.5

Q ss_pred             CCceEEEEcCC----CcEEEEECCC-----CeeEEEEcCCC-Cccc-cccCCCc-CccccCCcceEEEcCCCCEEEEECC
Q 011014           83 MEPFSVAVSPS----GELLVLDSEN-----NSRPKLVAGSP-EGYY-GHVDGRP-RGARMNHPKGLAVDDRGNIYIADTM  150 (495)
Q Consensus        83 ~~P~GIAVd~d----G~LyVaDs~n-----~~ii~ivaGs~-~g~~-G~~dG~~-~~a~f~~P~GIAVD~dGnIYVAD~~  150 (495)
                      ..|.||+++++    |.|||++..+     +++.++-.... .... -...+.. .......|.+|+++++|+|||++..
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~  154 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGE  154 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence            57999999997    8999999854     43444322111 0000 0000000 0124567899999999999999742


Q ss_pred             -------------CCEEEEEcCCCcEEEecCcccCCCCCCCCC---CcCcccCCCceEEEECC-CCeEEEEECCCCe---
Q 011014          151 -------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGP---SEDAKFSNDFDVVYVGS-SCSLLVIDRGNQA---  210 (495)
Q Consensus       151 -------------N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~---~~~a~f~~P~gVa~vd~-~G~LyVaD~gN~r---  210 (495)
                                   .++|.+|+.+|. ...+..    .....+.   .-..-+.+|.+++ +++ +|.|||+|.++++   
T Consensus       155 ~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~np----f~~~~~~~~~i~a~G~rnp~g~a-~d~~~g~l~v~d~g~~~~~~  228 (352)
T 2ism_A          155 VYERELAQDLASLGGKILRLTPEGE-PAPGNP----FLGRRGARPEVYSLGHRNPQGLA-WHPKTGELFSSEHGPSGEQG  228 (352)
T ss_dssp             TTCGGGGGCTTCSSSEEEEECTTSS-BCTTCT----TTTCTTSCTTEEEECCSEECCCE-ECTTTCCEEEEEECC-----
T ss_pred             CCCCccccCCCCCceEEEEEcCCCC-CCCCCc----ccCCCCCCccEEEEcCCCcccEE-EECCCCCEEEEEcCCCCCCC
Confidence                         368999998871 000100    0000000   0111257899999 566 8999999998887   


Q ss_pred             -----EEEEECCCCc----e-------------eeCCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          211 -----IREIQLHDDD----C-------------SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       211 -----I~~~d~~g~~----~-------------~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                           |..+...++.    |             ........|.|+++.   .+.+|+++...+||..+-++...
T Consensus       229 ~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~---~G~l~v~~~~~~~v~~v~~~~~~  299 (352)
T 2ism_A          229 YGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF---RGDLYVAGLRGQALLRLVLEGER  299 (352)
T ss_dssp             -CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE---TTEEEEEETTTTEEEEEEEEEET
T ss_pred             CCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE---CCEEEEEECCCCEEEEEEECCCC
Confidence                 7777654311    0             011122358999995   56899999999999777666543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.15  E-value=1.6e-09  Score=105.06  Aligned_cols=154  Identities=12%  Similarity=0.028  Sum_probs=111.3

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-C
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-T  160 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~  160 (495)
                      ..|.|++++++|+ ||++|..+.++..+-..+......        .....|.+|++|++|+|||++..+++|.+++. +
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEM--------HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEE--------SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEE--------CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            4699999999998 999998887554443322111111        12346899999999999999999999999996 6


Q ss_pred             C-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC-----------------CCCeEEEEECCCCcee
Q 011014          161 G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-----------------GNQAIREIQLHDDDCS  222 (495)
Q Consensus       161 G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~-----------------gN~rI~~~d~~g~~~~  222 (495)
                      | +..+.....            ...+..|.+|+ ++++|+|||+|.                 .+++|.++++++....
T Consensus       100 g~~~~~~~~~~------------~~~~~~~~~i~-~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  166 (296)
T 3e5z_A          100 GEWESIADSFE------------GKKLNSPNDVC-LAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSA  166 (296)
T ss_dssp             CCEEEEECEET------------TEECCCCCCEE-ECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEE
T ss_pred             CcEEEEeeccC------------CCCCCCCCCEE-ECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEE
Confidence            7 444432111            12466899999 789999999985                 2469999999866554


Q ss_pred             eCCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeC
Q 011014          223 DNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       223 ~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                      .......|.||+++.  .+.+++++...++|..+-..
T Consensus       167 ~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          167 PIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             EECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEEC
T ss_pred             eecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEEC
Confidence            455667899999986  33334999999999655443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.10  E-value=2.9e-09  Score=104.33  Aligned_cols=149  Identities=13%  Similarity=0.051  Sum_probs=102.1

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCC-ccccccCCCcCccccCCcceEEEcCCCCEEEEECC-----------
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPE-GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-----------  150 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~-g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~-----------  150 (495)
                      ..|.+|+++++|+|||+.  ++++..+-..+.. .......   ....++.|.+|++|++|+|||++..           
T Consensus        54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~---~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~  128 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVD---NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH  128 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECC---TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred             CceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecC---CCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence            368999999999999997  3434433322211 1111100   1123567899999999999999843           


Q ss_pred             CCEEEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECC--CCcee----
Q 011014          151 NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH--DDDCS----  222 (495)
Q Consensus       151 N~rIrk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~--g~~~~----  222 (495)
                      ..+|.+++.+| +..+..                 .+..|++++ +++++ .|||+|..+++|++++.+  +..+.    
T Consensus       129 ~~~l~~~d~~g~~~~~~~-----------------~~~~pngi~-~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~  190 (297)
T 3g4e_A          129 QGALYSLFPDHHVKKYFD-----------------QVDISNGLD-WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS  190 (297)
T ss_dssp             CEEEEEECTTSCEEEEEE-----------------EESBEEEEE-ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE
T ss_pred             CcEEEEEECCCCEEEEee-----------------ccccccceE-EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE
Confidence            45899999877 444321                 245789999 46665 699999999999999864  22221    


Q ss_pred             --e-CCCCCCcceEEEEecCcCeEEEEEccCCceEEE
Q 011014          223 --D-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       223 --~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                        . ....+.|.|+++|.  .+++||+....++|..+
T Consensus       191 ~~~~~~~~~~p~g~~~d~--~G~lwva~~~~~~v~~~  225 (297)
T 3g4e_A          191 VYKLEKEEQIPDGMCIDA--EGKLWVACYNGGRVIRL  225 (297)
T ss_dssp             EEECCGGGCEEEEEEEBT--TSCEEEEEETTTEEEEE
T ss_pred             EEECCCCCCCCCeeEECC--CCCEEEEEcCCCEEEEE
Confidence              1 22346899999997  56899999999998443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.08  E-value=4.1e-09  Score=103.44  Aligned_cols=153  Identities=12%  Similarity=0.024  Sum_probs=109.1

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      ..+.|++++++|+ ||++|..++++.++-. ... ..-.      ...-..|.|+++|++|+|||++..+++|.+++.+|
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~------~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g  116 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVL------LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG  116 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEE------EESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEE------eCCCCccceeeECCCCCEEEEECCCCEEEEECCCC
Confidence            3688999999988 9999998885555532 211 1000      01124689999999999999999999999999888


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC-----------------CCCeEEEEECCCCce-e
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-----------------GNQAIREIQLHDDDC-S  222 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~-----------------gN~rI~~~d~~g~~~-~  222 (495)
                       +.+++....            ...++.|++|+ ++++|+|||+|.                 ..+.|.++++++..+ .
T Consensus       117 ~~~~~~~~~~------------~~~~~~~~~i~-~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~  183 (305)
T 3dr2_A          117 QAHLLVGRYA------------GKRLNSPNDLI-VARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR  183 (305)
T ss_dssp             CEEEEECEET------------TEECSCCCCEE-ECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred             CEEEEEeccC------------CCccCCCCCEE-ECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence             555543211            13467899999 799999999984                 246899999864433 3


Q ss_pred             eCCCCCCcceEEEEecCcCeEEEEEccC-----CceEEEee
Q 011014          223 DNYDDTFHLGIFVLVAAAFFGYMLALLQ-----RRVQAMFS  258 (495)
Q Consensus       223 ~~~~~g~P~GIAvd~~a~~~~yv~d~~~-----~Rv~~~~~  258 (495)
                      .. ....|.|++++.. +..+|+++...     ++|..+-.
T Consensus       184 ~~-~~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          184 MA-DLDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             EE-EESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEE
T ss_pred             Ee-cCCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEe
Confidence            33 5557999999862 44689999873     77754433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.06  E-value=6.8e-09  Score=101.68  Aligned_cols=146  Identities=8%  Similarity=-0.023  Sum_probs=100.4

Q ss_pred             CCCceEEEEcCCCcEEEEECCCC----------eeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENN----------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM  150 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~----------~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~  150 (495)
                      ...|.+|++|++|+|||++....          ..+..+...  +...     .....+..|.||+++++|+ |||+|+.
T Consensus        97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~-----~~~~~~~~pngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A           97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--HHVK-----KYFDQVDISNGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--SCEE-----EEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred             CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--CCEE-----EEeeccccccceEEcCCCCEEEEecCC
Confidence            35689999999999999985322          123333211  1100     0122467899999999996 9999999


Q ss_pred             CCEEEEEc---CCC-cE---EEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC-CCcee
Q 011014          151 NMAIRKIS---DTG-VT---TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCS  222 (495)
Q Consensus       151 N~rIrk~d---~~G-V~---tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~-g~~~~  222 (495)
                      +++|++|+   .+| +.   .++...              .....|.+++ +|.+|+|||++.++++|.+|+++ |....
T Consensus       170 ~~~i~~~~~d~~~G~~~~~~~~~~~~--------------~~~~~p~g~~-~d~~G~lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          170 SYSVDAFDYDLQTGQISNRRSVYKLE--------------KEEQIPDGMC-IDAEGKLWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             GTEEEEEEECTTTCCEEEEEEEEECC--------------GGGCEEEEEE-EBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred             CCcEEEEeccCCCCcccCcEEEEECC--------------CCCCCCCeeE-ECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence            99999997   345 21   121100              0123688998 79999999999999999999998 66554


Q ss_pred             eCCCC-CCcceEEEEecCcCeEEEEEcc
Q 011014          223 DNYDD-TFHLGIFVLVAAAFFGYMLALL  249 (495)
Q Consensus       223 ~~~~~-g~P~GIAvd~~a~~~~yv~d~~  249 (495)
                      ..... ..|..+++.......+||+...
T Consensus       235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          235 TVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            43333 4688999874345689998864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.06  E-value=3.3e-09  Score=104.14  Aligned_cols=151  Identities=17%  Similarity=0.194  Sum_probs=104.2

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEEC------------
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT------------  149 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~------------  149 (495)
                      ..|.++++|++|+|||++..++++..+-. |........    .....++.|.+|++|++|+|||+|.            
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~----~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~  161 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGR----YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCP  161 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECE----ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCC
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEec----cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccc
Confidence            46999999999999999988774444322 221000011    1123578899999999999999984            


Q ss_pred             -----CCCEEEEEcC-CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCC-----CeEEEEEC
Q 011014          150 -----MNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGN-----QAIREIQL  216 (495)
Q Consensus       150 -----~N~rIrk~d~-~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN-----~rI~~~d~  216 (495)
                           ..+.|.+++. +| +..+.                  .+..|++++ ++.++ .|||+|..+     ++|++++.
T Consensus       162 ~~~~~~~~~v~~~d~~~g~~~~~~------------------~~~~p~gl~-~spdg~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          162 ADPELAHHSVYRLPPDGSPLQRMA------------------DLDHPNGLA-FSPDEQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             CCCSSSCEEEEEECSSSCCCEEEE------------------EESSEEEEE-ECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred             cccccCCCeEEEEcCCCCcEEEEe------------------cCCCCcceE-EcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence                 1367999996 45 54442                  134688999 56666 599999974     89999998


Q ss_pred             CCCcee-----eCCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          217 HDDDCS-----DNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       217 ~g~~~~-----~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      ++..+.     .....+.|.||++|.  .+++|++.  ..+|  ..++.++
T Consensus       223 ~~~~l~~~~~~~~~~~~~pdgi~~d~--~G~lwv~~--~~gv--~~~~~~g  267 (305)
T 3dr2_A          223 RDGALHDRRHFASVPDGLPDGFCVDR--GGWLWSSS--GTGV--CVFDSDG  267 (305)
T ss_dssp             ETTEEEEEEEEECCSSSCCCSEEECT--TSCEEECC--SSEE--EEECTTS
T ss_pred             cCCCccCCeEEEECCCCCCCeEEECC--CCCEEEec--CCcE--EEECCCC
Confidence            764321     123456899999997  66799988  4566  4455443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.05  E-value=3.8e-09  Score=101.92  Aligned_cols=150  Identities=12%  Similarity=0.098  Sum_probs=103.5

Q ss_pred             CCceEEEEcCC-CcEEEEECCCCeeEEEEcCCCCcccccc-CCCcCccccCCcceEEEcCCCCEEEEECCC---------
Q 011014           83 MEPFSVAVSPS-GELLVLDSENNSRPKLVAGSPEGYYGHV-DGRPRGARMNHPKGLAVDDRGNIYIADTMN---------  151 (495)
Q Consensus        83 ~~P~GIAVd~d-G~LyVaDs~n~~ii~ivaGs~~g~~G~~-dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N---------  151 (495)
                      ..|.+|+++++ |+|||++..+ ++..+ ....  ..... ........+..|.+|++|++|+|||++..+         
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~-~l~~~-d~~g--~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRL-GLLVV-QTDG--TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTT-EEEEE-ETTS--CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCceEEEecCCCcEEEEECCC-CEEEE-eCCC--CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            47999999999 9999999865 34443 2221  11110 000011245679999999999999999865         


Q ss_pred             ------CEEEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEEC----CCC-eEEEEECCCCeEEEEECCC-
Q 011014          152 ------MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG----SSC-SLLVIDRGNQAIREIQLHD-  218 (495)
Q Consensus       152 ------~rIrk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd----~~G-~LyVaD~gN~rI~~~d~~g-  218 (495)
                            ++|.+++.+| +..+..                 .+..|.++++ +    .+| .|||+|..+++|.++++++ 
T Consensus       147 ~~~~~~~~l~~~~~~g~~~~~~~-----------------~~~~~~~i~~-~~~~d~dg~~l~v~~~~~~~i~~~~~~~~  208 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTDGQMIQVDT-----------------AFQFPNGIAV-RHMNDGRPYQLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             TTSSSCEEEEEECTTSCEEEEEE-----------------EESSEEEEEE-EECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred             cccCCCCeEEEECCCCCEEEecc-----------------CCCCcceEEE-ecccCCCCCEEEEEECCCCeEEEEECCCC
Confidence                  6899999777 333321                 2346788884 5    666 7999999999999999752 


Q ss_pred             Cce------eeC-CCC-CCcceEEEEecCcCeEEEEEccCCceEEE
Q 011014          219 DDC------SDN-YDD-TFHLGIFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       219 ~~~------~~~-~~~-g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                      ...      ... ... +.|.+|++|.  .+++|+++..+++|..+
T Consensus       209 g~~~~~~~~~~~~~~~~~~p~~i~~d~--~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          209 AKIENKKVWGHIPGTHEGGADGMDFDE--DNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             TEEEEEEEEEECCCCSSCEEEEEEEBT--TCCEEEEEETTTEEEEE
T ss_pred             CccccceEEEECCCCCCCCCCceEECC--CCCEEEEEcCCCEEEEE
Confidence            221      112 222 6799999996  56899999988899543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.05  E-value=4e-09  Score=105.79  Aligned_cols=172  Identities=14%  Similarity=0.047  Sum_probs=106.8

Q ss_pred             CCCCceEEEEcCCCcEEEEECCC-----CeeEEEEcCCC--CccccccCCCcCccccCCcceEEEcC-CCCEEEEEC---
Q 011014           81 FGMEPFSVAVSPSGELLVLDSEN-----NSRPKLVAGSP--EGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADT---  149 (495)
Q Consensus        81 ~~~~P~GIAVd~dG~LyVaDs~n-----~~ii~ivaGs~--~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~---  149 (495)
                      .+..|.+|++|++|+|||+|..+     .++..+-..+.  ...... ... .......|.+|++|+ +|.+||+|.   
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~-~~~-~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYL-PPP-ITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEEC-CTT-TSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEEC-Chh-hcccccccceEEEecCCCEEEEEcCccC
Confidence            35689999999999999999873     43433322221  111111 000 012335789999996 578999999   


Q ss_pred             CCCEEEEEcCC-C-cEEEecCcccCCC----CCCCCC-----CcCc----ccCCCceEEEECCCC-eEEEEECCCCeEEE
Q 011014          150 MNMAIRKISDT-G-VTTIAGGKWSRGV----GHVDGP-----SEDA----KFSNDFDVVYVGSSC-SLLVIDRGNQAIRE  213 (495)
Q Consensus       150 ~N~rIrk~d~~-G-V~tiaGg~~G~~~----g~~dG~-----~~~a----~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~  213 (495)
                      .++.|.+++.. | +..+..+..+...    -..+|.     ....    ....|++|+ ++++| .||+++..+++|.+
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia-~s~dg~~ly~~~~~~~~l~~  221 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV-LDAENEWLYLSPMHSTSMYR  221 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE-ECTTSCEEEEEESSCSEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE-eccCCCEEEEEeCCCCeEEE
Confidence            89999999954 5 3333222100000    000110     0000    114688999 56666 79999999999999


Q ss_pred             EECC----CCc--------eeeCCCCCCcceEEEEecCcCeEEEEEccCCceEEEe
Q 011014          214 IQLH----DDD--------CSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       214 ~d~~----g~~--------~~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      ++.+    +..        +...+..+.|.||++|.  .+++|+++..+++|..+-
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~--~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK--DHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT--TCCEEEEEGGGTEEEEEE
T ss_pred             EEHHHhcCCCCChhhhhcceEecccCCCCceEEECC--CCCEEEEccCCCeEEEEE
Confidence            9853    110        11122345899999997  578999999999995443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.04  E-value=3.8e-09  Score=101.95  Aligned_cols=158  Identities=10%  Similarity=0.071  Sum_probs=106.8

Q ss_pred             CCceEEEEcCCCcEEEE-------ECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCC-CCEEEEECCCCEE
Q 011014           83 MEPFSVAVSPSGELLVL-------DSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIADTMNMAI  154 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVa-------Ds~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~d-GnIYVAD~~N~rI  154 (495)
                      ..|.+++++++|+|||+       |..++++..+-..+..-. -... .........|.+|++|++ |+|||++..+ +|
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~l   94 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICK-PEVNGYGGIPAGCQCDRDANQLFVADMRL-GL   94 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEEC-CEETTEECCEEEEEECSSSSEEEEEETTT-EE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEe-cccCCCCCCCceEEEecCCCcEEEEECCC-CE
Confidence            47999999999999999       766664443321221100 0000 000012357999999999 9999999854 89


Q ss_pred             EEEcCCC-cEEE-ecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC---------------CeEEEEECC
Q 011014          155 RKISDTG-VTTI-AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN---------------QAIREIQLH  217 (495)
Q Consensus       155 rk~d~~G-V~ti-aGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN---------------~rI~~~d~~  217 (495)
                      .+++.+| +..+ ....            ....+..|.+|+ ++.+|+|||++..+               ++|.+++++
T Consensus        95 ~~~d~~g~~~~~~~~~~------------~~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (314)
T 1pjx_A           95 LVVQTDGTFEEIAKKDS------------EGRRMQGCNDCA-FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD  161 (314)
T ss_dssp             EEEETTSCEEECCSBCT------------TSCBCBCCCEEE-ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred             EEEeCCCCEEEEEeccC------------CCccccCCcCEE-ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence            9999777 3333 2110            012356789998 68999999999876               689999988


Q ss_pred             CCceeeCCCCCCcceEEEE----ecCcCeEEEEEccCCceEEEe
Q 011014          218 DDDCSDNYDDTFHLGIFVL----VAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       218 g~~~~~~~~~g~P~GIAvd----~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      +...........|.+++++    . .+..+|+++..+++|..+-
T Consensus       162 g~~~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~  204 (314)
T 1pjx_A          162 GQMIQVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYD  204 (314)
T ss_dssp             SCEEEEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEE
T ss_pred             CCEEEeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEE
Confidence            6544333344568999998    5 2337899999999996554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.03  E-value=3.1e-09  Score=108.31  Aligned_cols=155  Identities=14%  Similarity=0.131  Sum_probs=101.5

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcCC----CCEEEEECCC-----
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDR----GNIYIADTMN-----  151 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~d----GnIYVAD~~N-----  151 (495)
                      +..|.+|+++++|.|||+|.. . .+.++. |.... .....  .....+..|.|||++++    |.|||+++.+     
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~-g-~I~~i~~g~~~~-~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERP-G-RIRLFREGRLST-YAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETT-T-EEEEEETTEEEE-EEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCeEEEEeCC-C-eEEEEECCCccE-eecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            348999999999999999987 4 444443 32111 11001  11224678999999997    8899999865     


Q ss_pred             CEEEEEcCCC--c---EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC-------------CCeEEE
Q 011014          152 MAIRKISDTG--V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-------------NQAIRE  213 (495)
Q Consensus       152 ~rIrk~d~~G--V---~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g-------------N~rI~~  213 (495)
                      ++|.+++.++  +   .++..+..          ........|.+|+ ++++|.|||++..             +++|.+
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p----------~~~~~~h~~~~l~-~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~r  173 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIP----------ARPHGLHSGGRIA-FGPDGMLYVTTGEVYERELAQDLASLGGKILR  173 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEC----------CCTTCCCCCCCEE-ECTTSCEEEECCCTTCGGGGGCTTCSSSEEEE
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCC----------CCCCCCcCCceEE-ECCCCCEEEEECCCCCCccccCCCCCceEEEE
Confidence            8999999543  1   22211100          0012356788998 7899999999742             368999


Q ss_pred             EECCCCce--------------eeCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          214 IQLHDDDC--------------SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       214 ~d~~g~~~--------------~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      |+++|...              .+..+...|.||+++.. .+.+|+++..++++
T Consensus       174 i~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~-~g~l~v~d~g~~~~  226 (352)
T 2ism_A          174 LTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPK-TGELFSSEHGPSGE  226 (352)
T ss_dssp             ECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTT-TCCEEEEEECC---
T ss_pred             EcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECC-CCCEEEEEcCCCCC
Confidence            99998321              11223345999999963 35799999998885

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.02  E-value=1.4e-08  Score=101.90  Aligned_cols=160  Identities=11%  Similarity=0.040  Sum_probs=104.4

Q ss_pred             CCceEEEEcCCCcEEEEECCC----CeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECC-----CCE
Q 011014           83 MEPFSVAVSPSGELLVLDSEN----NSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-----NMA  153 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n----~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~-----N~r  153 (495)
                      ..|.+|+++++|+|||+....    .++..+-.|........ . ......|..|.||++|++|+|||+|.+     .++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~-~-~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQ-S-GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCC-C-SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCc-c-cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            379999999999999997421    12333322211100000 0 112347899999999999999999987     589


Q ss_pred             EEEEcCC-C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC---CCCeEEEEECCCCce-eeCCC
Q 011014          154 IRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR---GNQAIREIQLHDDDC-SDNYD  226 (495)
Q Consensus       154 Irk~d~~-G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~---gN~rI~~~d~~g~~~-~~~~~  226 (495)
                      |.+||.+ |  +.++......           ......|++|++...++.+||+|.   .++.|.++++.+... .....
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~-----------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPI-----------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTT-----------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred             EEEEECCCCeEEEEEECChhh-----------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence            9999954 5  3444221100           012357899995335789999999   899999999875332 21111


Q ss_pred             ------------------------------CCCcceEEEEecCcCeEEEEEccCCceEEE
Q 011014          227 ------------------------------DTFHLGIFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       227 ------------------------------~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                                                    ...|.||+++. .+..+|+++...+++-.+
T Consensus       164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEE
T ss_pred             CCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEE
Confidence                                          01268899986 245799999988888433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.02  E-value=5.6e-09  Score=106.78  Aligned_cols=164  Identities=17%  Similarity=0.096  Sum_probs=107.6

Q ss_pred             CceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCC----CCE
Q 011014           69 GYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR----GNI  144 (495)
Q Consensus        69 G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~d----GnI  144 (495)
                      ++.++....+   +..|.+|+++++|.|||+|.. . .+.++............  .....+..|.|||++++    |.|
T Consensus        18 ~~~~~~va~~---l~~P~~ia~~pdG~l~V~e~~-g-~I~~~d~~G~~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~l   90 (354)
T 3a9g_A           18 KFKISEVASD---LEVPWSIAPLGGGRYLVTERP-G-RLVLISPSGKKLVASFD--VANVGEAGLLGLALHPEFPKKSWV   90 (354)
T ss_dssp             CEEEEEEECS---CSCEEEEEEEETTEEEEEETT-T-EEEEECSSCEEEEEECC--CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred             CeEEEEEeCC---CCCCeEEEEcCCCeEEEEeCC-C-EEEEEeCCCceEeeccc--eeecCCCceeeEEeCCCCCcCCEE
Confidence            3444444432   458999999999999999987 3 45555432210111101  11223567999999996    899


Q ss_pred             EEEECC---C----CEEEEEcCCC-------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC---
Q 011014          145 YIADTM---N----MAIRKISDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG---  207 (495)
Q Consensus       145 YVAD~~---N----~rIrk~d~~G-------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g---  207 (495)
                      ||+++.   +    ++|.+++.++       ..++..+..            ......|.+|+ ++++|.|||++..   
T Consensus        91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~------------~~~~h~~~~l~-~~pDG~Lyvt~G~~~~  157 (354)
T 3a9g_A           91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP------------GAYIHNGGRIR-FGPDGMLYITTGDAAD  157 (354)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE------------CCSSCCCCCEE-ECTTSCEEEECCCTTC
T ss_pred             EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC------------CCCCcCCceEE-ECCCCcEEEEECCCCC
Confidence            999974   4    7999998443       122211100            11345788898 7999999999632   


Q ss_pred             ----------CCeEEEEECCCCc---------eeeCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          208 ----------NQAIREIQLHDDD---------CSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       208 ----------N~rI~~~d~~g~~---------~~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                                +++|.+|+++|..         -.+..+...|.||++|.. .+.+|+++...++.
T Consensus       158 ~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~-~g~l~v~d~g~~~~  221 (354)
T 3a9g_A          158 PRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRA-SGVMVATEHGPVGH  221 (354)
T ss_dssp             GGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTT-TCCEEEEECCSSSC
T ss_pred             CccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCC-CCCEEEEecCCCCC
Confidence                      3689999999862         122334456999999963 35799999988774

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.97  E-value=4.5e-08  Score=97.59  Aligned_cols=143  Identities=10%  Similarity=0.041  Sum_probs=98.6

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECC-CCEEEEEcCC
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-NMAIRKISDT  160 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~-N~rIrk~d~~  160 (495)
                      ..|.+|+++++|.|||++..++ .+.++. .+. .............++..|.+|++ .++.|||++.+ ++.|.+||..
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~-~v~~iD~~t~-~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDY-RIFIINPKTY-EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCS-EEEEEETTTT-EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred             CCCcEEEEeCCCeEEEEECCCC-eEEEEECCCC-eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence            5799999988899999996555 344443 222 11111010011235568999999 47899999984 8999999955


Q ss_pred             -C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC----------CeEEEEECCCCcee-eC--
Q 011014          161 -G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN----------QAIREIQLHDDDCS-DN--  224 (495)
Q Consensus       161 -G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN----------~rI~~~d~~g~~~~-~~--  224 (495)
                       +  +.++..+                  ..|.+++ ++++|.+||++.++          +.|.+|++.+..+. ..  
T Consensus       161 t~~~~~~i~~g------------------~~p~~i~-~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~  221 (328)
T 3dsm_A          161 TDKVVDELTIG------------------IQPTSLV-MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF  221 (328)
T ss_dssp             TTEEEEEEECS------------------SCBCCCE-ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEEEcC------------------CCccceE-EcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence             4  3444211                  2578888 68899999999886          89999999876654 22  


Q ss_pred             CCCCCcceEEEEecCcCeEEEEEc
Q 011014          225 YDDTFHLGIFVLVAAAFFGYMLAL  248 (495)
Q Consensus       225 ~~~g~P~GIAvd~~a~~~~yv~d~  248 (495)
                      .....|.+++++. .+..+|+++.
T Consensus       222 ~~g~~p~~la~~~-d~~~lyv~~~  244 (328)
T 3dsm_A          222 KLGDWPSEVQLNG-TRDTLYWINN  244 (328)
T ss_dssp             CTTCCCEEEEECT-TSCEEEEESS
T ss_pred             CCCCCceeEEEec-CCCEEEEEcc
Confidence            1123799999995 2568899875

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.94  E-value=1.6e-08  Score=104.31  Aligned_cols=147  Identities=12%  Similarity=0.036  Sum_probs=101.4

Q ss_pred             CCceEEEEcC--CC--cEEEEECCC-CeeEEEEc---CCC-CccccccCCCcCccccCCcceEEEcCCCCEEEEEC----
Q 011014           83 MEPFSVAVSP--SG--ELLVLDSEN-NSRPKLVA---GSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT----  149 (495)
Q Consensus        83 ~~P~GIAVd~--dG--~LyVaDs~n-~~ii~iva---Gs~-~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~----  149 (495)
                      .+|+||.+..  +|  +|||++... ...+.++.   ++. ........+    ..|+.|+++++|++|.+||++.    
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g----~~~~~pND~~v~~~G~fyvt~~~~ft  187 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH----KLLPSVNDIVAVGPEHFYATNDHYFI  187 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC----TTCSSEEEEEEEETTEEEEEESCSCS
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc----CCCCCCceEEEeCCCCEEecCCcEeC
Confidence            4899999955  45  599999873 22444432   221 011111122    3789999999999999999975    


Q ss_pred             -------------CCCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEE
Q 011014          150 -------------MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQ  215 (495)
Q Consensus       150 -------------~N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d  215 (495)
                                   ...+|.+++++.++.++.                 .+..|+||++ ++++ .|||+|+..++|++|+
T Consensus       188 d~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~-----------------~l~~pNGia~-spDg~~lYvadt~~~~I~~~~  249 (355)
T 3sre_A          188 DPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-----------------GFDFANGINI-SPDGKYVYIAELLAHKIHVYE  249 (355)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECTTCCEEEEE-----------------EESSEEEEEE-CTTSSEEEEEEGGGTEEEEEE
T ss_pred             CcccccchhhccCCccEEEEEECCeEEEeec-----------------CCcccCcceE-CCCCCEEEEEeCCCCeEEEEE
Confidence                         246788888755555532                 3668999995 5555 8999999999999999


Q ss_pred             CCCC-cee---eCCCCCCcceEEEEecCc-CeEEEEEccC-Cce
Q 011014          216 LHDD-DCS---DNYDDTFHLGIFVLVAAA-FFGYMLALLQ-RRV  253 (495)
Q Consensus       216 ~~g~-~~~---~~~~~g~P~GIAvd~~a~-~~~yv~d~~~-~Rv  253 (495)
                      .+.. ...   .....+.|.|+++|.  . +++|+++..+ .+|
T Consensus       250 ~~~~g~l~~~~~~~~~g~PDGi~vD~--e~G~lwva~~~~g~~v  291 (355)
T 3sre_A          250 KHANWTLTPLRVLSFDTLVDNISVDP--VTGDLWVGCHPNGMRI  291 (355)
T ss_dssp             ECTTSCEEEEEEEECSSEEEEEEECT--TTCCEEEEEESCHHHH
T ss_pred             ECCCCcEecCEEEeCCCCCceEEEeC--CCCcEEEEecCCceEE
Confidence            8642 221   123357899999995  3 6899988644 455

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.91  E-value=1e-07  Score=94.99  Aligned_cols=148  Identities=16%  Similarity=0.044  Sum_probs=100.6

Q ss_pred             CceEEEEcCCCcEEEEECC-CCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCC----------C
Q 011014           84 EPFSVAVSPSGELLVLDSE-NNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN----------M  152 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~-n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N----------~  152 (495)
                      .|.+|++ .++.|||++.. .+ .+.++.-..........      .-..|.+|++|++|++||++.++          +
T Consensus       132 ~p~~i~~-~~~~lyv~~~~~~~-~v~viD~~t~~~~~~i~------~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~  203 (328)
T 3dsm_A          132 STEQMVQ-YGKYVYVNCWSYQN-RILKIDTETDKVVDELT------IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAP  203 (328)
T ss_dssp             BCCCEEE-ETTEEEEEECTTCC-EEEEEETTTTEEEEEEE------CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCC
T ss_pred             CcceEEE-ECCEEEEEcCCCCC-EEEEEECCCCeEEEEEE------cCCCccceEEcCCCCEEEEECCCccCCccccCCc
Confidence            8999999 47899999984 55 45554322101111101      12368999999999999999876          8


Q ss_pred             EEEEEcCCC--c-EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee---CC-
Q 011014          153 AIRKISDTG--V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD---NY-  225 (495)
Q Consensus       153 rIrk~d~~G--V-~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~---~~-  225 (495)
                      +|.+||...  + .++.- ..               -..|.++++..+.+.|||++.   .|.+|++.+..+..   .. 
T Consensus       204 ~v~~id~~t~~v~~~~~~-~~---------------g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~  264 (328)
T 3dsm_A          204 SLYRIDAETFTVEKQFKF-KL---------------GDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEF  264 (328)
T ss_dssp             EEEEEETTTTEEEEEEEC-CT---------------TCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCC
T ss_pred             eEEEEECCCCeEEEEEec-CC---------------CCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecC
Confidence            999999654  3 23311 00               026899995445678999986   89999998765432   11 


Q ss_pred             CCCCcceEEEEecCcCeEEEEE----ccCCceEEEeeCCC
Q 011014          226 DDTFHLGIFVLVAAAFFGYMLA----LLQRRVQAMFSSKD  261 (495)
Q Consensus       226 ~~g~P~GIAvd~~a~~~~yv~d----~~~~Rv~~~~~s~~  261 (495)
                      ....|.||+++. .++.+||++    ..+++|  .+|+.+
T Consensus       265 ~~~~p~gi~vdp-~~g~lyva~~~~y~~~~~V--~v~d~~  301 (328)
T 3dsm_A          265 RDTKYYGLTVNP-NNGEVYVADAIDYQQQGIV--YRYSPQ  301 (328)
T ss_dssp             CSSCEEEEEECT-TTCCEEEEECTTSSSEEEE--EEECTT
T ss_pred             CCCceEEEEEcC-CCCeEEEEcccccccCCEE--EEECCC
Confidence            135799999984 256899999    778888  455544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.91  E-value=2.2e-07  Score=90.90  Aligned_cols=149  Identities=14%  Similarity=0.083  Sum_probs=102.2

Q ss_pred             CCceEEEEcCCCcEEEEECCC----CeeEEEEcCCCCcccc-ccCCCcCccccCCcceEEEcCCCCEEEEECC------C
Q 011014           83 MEPFSVAVSPSGELLVLDSEN----NSRPKLVAGSPEGYYG-HVDGRPRGARMNHPKGLAVDDRGNIYIADTM------N  151 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n----~~ii~ivaGs~~g~~G-~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~------N  151 (495)
                      ..|.+|+++++|+|||++..+    .+ +.++.-.. +... ....   ......|.+|++|++|+|||++..      +
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~-i~~~d~~~-~~~~~~~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGG-IFAATENG-DNLQDIIED---LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCE-EEEECTTS-CSCEEEECS---SSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCce-EEEEeCCC-CEEEEEEcc---CccCCcccceEECCCCCEEEEeccccccCCC
Confidence            479999999999999999766    43 33443211 1100 0000   012357899999999999999975      4


Q ss_pred             CEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECC--CCcee----
Q 011014          152 MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH--DDDCS----  222 (495)
Q Consensus       152 ~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~--g~~~~----  222 (495)
                      .+|.+++.++  +..+..                 .+..|.+++ ++++| .|||++..+++|++++++  +....    
T Consensus       162 ~~l~~~~~~~~~~~~~~~-----------------~~~~~~~i~-~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~  223 (333)
T 2dg1_A          162 GGVYYVSPDFRTVTPIIQ-----------------NISVANGIA-LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA  223 (333)
T ss_dssp             EEEEEECTTSCCEEEEEE-----------------EESSEEEEE-ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE
T ss_pred             ceEEEEeCCCCEEEEeec-----------------CCCcccceE-ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc
Confidence            7899999764  333321                 134578888 57777 599999989999999984  33321    


Q ss_pred             ----eCCCCCCcceEEEEecCcCeEEEEEccCCceEEE
Q 011014          223 ----DNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       223 ----~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                          ...+...|.+|++|.  .+++|+++..+++|..+
T Consensus       224 ~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~v~~~  259 (333)
T 2dg1_A          224 TIPYYFTGHEGPDSCCIDS--DDNLYVAMYGQGRVLVF  259 (333)
T ss_dssp             EEEEECCSSSEEEEEEEBT--TCCEEEEEETTTEEEEE
T ss_pred             eEEEecCCCCCCCceEECC--CCCEEEEEcCCCEEEEE
Confidence                112224799999997  56899999888888443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.82  E-value=3.9e-07  Score=89.40  Aligned_cols=143  Identities=13%  Similarity=0.075  Sum_probs=101.6

Q ss_pred             CceEEEEcCCCcEEEEECC-CCeeEEEEcCCC--CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014           84 EPFSVAVSPSGELLVLDSE-NNSRPKLVAGSP--EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT  160 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~-n~~ii~ivaGs~--~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~  160 (495)
                      ...++++.++|+++|++.. +. ++..+.-.+  ....+. ++ .....+..|.+++++.+|+++|++..+++|..||.+
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~-~v~~vd~~Gk~l~~~~~-~~-~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPS-TILEVNMKGEVLSKTEF-ET-GIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTE-EEEEECTTSCEEEEEEE-CC-SCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cccccEECCCCCEEEEecCCCC-EEEEEeCCCCEEEEEec-cC-CCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            4567888899999999988 55 444443222  111221 11 112345578899999999999999999999999988


Q ss_pred             C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC-CCceeeCC-------CCCCc
Q 011014          161 G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCSDNY-------DDTFH  230 (495)
Q Consensus       161 G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~-g~~~~~~~-------~~g~P  230 (495)
                      |  +.++...                  ..|.+++ ...+|+++|++..+++|..|+++ |+.+-...       ....|
T Consensus       155 G~~~w~~~~~------------------~~~~~~~-~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~  215 (276)
T 3no2_A          155 GQLLNSVKLS------------------GTPFSSA-FLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV  215 (276)
T ss_dssp             SCEEEEEECS------------------SCCCEEE-ECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEE
T ss_pred             CCEEEEEECC------------------CCcccee-EcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccc
Confidence            9  3443211                  2467777 57889999999999999999999 66653311       12248


Q ss_pred             ceEEEEecCcCeEEEEEccC
Q 011014          231 LGIFVLVAAAFFGYMLALLQ  250 (495)
Q Consensus       231 ~GIAvd~~a~~~~yv~d~~~  250 (495)
                      .+++++.  .+++||++...
T Consensus       216 ~~~~~~~--~G~i~v~~~~g  233 (276)
T 3no2_A          216 AQLFPLQ--NGGLYICNWQG  233 (276)
T ss_dssp             EEEEECT--TSCEEEEEECT
T ss_pred             ccceEcC--CCCEEEEeccC
Confidence            9999997  77899999643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.81  E-value=6.9e-07  Score=91.26  Aligned_cols=170  Identities=13%  Similarity=0.080  Sum_probs=103.5

Q ss_pred             CCceEEEEcCC----CcEEEEECC---C----CeeEEEEcCCCCcccc----ccCCCcCccccCCcceEEEcCCCCEEEE
Q 011014           83 MEPFSVAVSPS----GELLVLDSE---N----NSRPKLVAGSPEGYYG----HVDGRPRGARMNHPKGLAVDDRGNIYIA  147 (495)
Q Consensus        83 ~~P~GIAVd~d----G~LyVaDs~---n----~~ii~ivaGs~~g~~G----~~dG~~~~a~f~~P~GIAVD~dGnIYVA  147 (495)
                      ..|.|||++++    |.|||++..   +    +++.++-.....+...    -.++. .......|.+|+++++|+|||+
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~-~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGI-PGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEE-ECCSSCCCCCEEECTTSCEEEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcC-CCCCCcCCceEEECCCCcEEEE
Confidence            46999999996    899999874   2    3344432211100000    00000 1123557899999999999999


Q ss_pred             ECC-------------CCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECC-CCeEEEEECCCCe---
Q 011014          148 DTM-------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQA---  210 (495)
Q Consensus       148 D~~-------------N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~-~G~LyVaD~gN~r---  210 (495)
                      +..             +++|.+|+.+|.  +..   +  ..+.....-..-+.+|.+|+ +++ +|.|||+|.+.++   
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~--~p~---~--npf~~~~i~a~G~rnp~Gla-~d~~~g~l~v~d~g~~~~de  223 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKILRVDEEGR--PPA---D--NPFPNSPIWSYGHRNPQGID-WHRASGVMVATEHGPVGHDE  223 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEEEECTTSC--CCT---T--SSSTTCCEEEECCSCCCEEE-ECTTTCCEEEEECCSSSCCE
T ss_pred             ECCCCCCccccCCCCCCeEEEEEcCCCC--CCC---C--CCCCCCcEEEEccCCcceEE-EeCCCCCEEEEecCCCCCcE
Confidence            642             368999998872  000   0  00000000111267899999 566 8999999998865   


Q ss_pred             EEEEECCCCc----e-------------eeC-CCCCCcceEEEEec-----CcCeEEEEEccCCceEEEeeCCC
Q 011014          211 IREIQLHDDD----C-------------SDN-YDDTFHLGIFVLVA-----AAFFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       211 I~~~d~~g~~----~-------------~~~-~~~g~P~GIAvd~~-----a~~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                      |..+...++.    |             ... .....|.|+++..+     ..+.+|+++....||..+-+...
T Consensus       224 i~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          224 VNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             EEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred             EEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence            7776643311    0             011 22335999999422     25689999999999977766543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.79  E-value=3.5e-07  Score=89.76  Aligned_cols=151  Identities=13%  Similarity=-0.000  Sum_probs=105.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECC-CCEEEEEcCCC-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-NMAIRKISDTG-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~-N~rIrk~d~~G-  161 (495)
                      .+.+++++++|+|||+.  ++ .+..+.-++.-..-...+     .-....++++.++|+++|+|.. +++|..|+++| 
T Consensus        38 ~~~~~~~~pdG~ilvs~--~~-~V~~~d~~G~~~W~~~~~-----~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk  109 (276)
T 3no2_A           38 ECNSVAATKAGEILFSY--SK-GAKMITRDGRELWNIAAP-----AGCEMQTARILPDGNALVAWCGHPSTILEVNMKGE  109 (276)
T ss_dssp             CCCEEEECTTSCEEEEC--BS-EEEEECTTSCEEEEEECC-----TTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSC
T ss_pred             CCcCeEECCCCCEEEeC--CC-CEEEECCCCCEEEEEcCC-----CCccccccEECCCCCEEEEecCCCCEEEEEeCCCC
Confidence            58899999999999943  44 344443332111111000     0012457888999999999998 99999999999 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCCCCcceEEEEecCc
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAA  240 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~g~P~GIAvd~~a~  240 (495)
                       +..+.... +          ....+..|.+++ ...+|+++|++..+++|..|+++|+.+-.....+.|.+++++.  .
T Consensus       110 ~l~~~~~~~-~----------~~~~~~~~~~v~-~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~--~  175 (276)
T 3no2_A          110 VLSKTEFET-G----------IERPHAQFRQIN-KNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLD--N  175 (276)
T ss_dssp             EEEEEEECC-S----------CSSGGGSCSCCE-ECTTSCEEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECT--T
T ss_pred             EEEEEeccC-C----------CCcccccccCce-ECCCCCEEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcC--C
Confidence             33432110 0          012344677787 6889999999999999999999988776544456788888875  6


Q ss_pred             CeEEEEEccCCceEEE
Q 011014          241 FFGYMLALLQRRVQAM  256 (495)
Q Consensus       241 ~~~yv~d~~~~Rv~~~  256 (495)
                      ++++|++..++||..+
T Consensus       176 g~~~v~~~~~~~v~~~  191 (276)
T 3no2_A          176 GDCLVACGDAHCFVQL  191 (276)
T ss_dssp             SCEEEECBTTSEEEEE
T ss_pred             CCEEEEeCCCCeEEEE
Confidence            7889999999999433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.78  E-value=2.6e-07  Score=94.49  Aligned_cols=122  Identities=18%  Similarity=0.046  Sum_probs=82.0

Q ss_pred             cCCcceEEEcCCCCEEEEECCC-CEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC
Q 011014          130 MNHPKGLAVDDRGNIYIADTMN-MAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  208 (495)
Q Consensus       130 f~~P~GIAVD~dGnIYVAD~~N-~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN  208 (495)
                      +..|.+|++|++||+||+|+.. ..|.+++++|....++....         ........++||++.++...|+|++. .
T Consensus       136 ~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~---------~~~~~~~G~nGIv~~pdg~~Liv~~~-~  205 (334)
T 2p9w_A          136 PFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES---------GNGGQRPGYSGITFDPHSNKLIAFGG-P  205 (334)
T ss_dssp             CEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC---------CCSSSCCSCSEEEEETTTTEEEEESS-S
T ss_pred             ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC---------CCcccccCcceEEEeCCCCEEEEEcC-C
Confidence            3458899999999999999999 99999999993222111100         01123457899997655557788888 9


Q ss_pred             CeEEEEECCCCce--eeC---C---CCCCcceE-EEEecCcCeEEEEEccCCceEEEeeCCCCCc
Q 011014          209 QAIREIQLHDDDC--SDN---Y---DDTFHLGI-FVLVAAAFFGYMLALLQRRVQAMFSSKDDPR  264 (495)
Q Consensus       209 ~rI~~~d~~g~~~--~~~---~---~~g~P~GI-Avd~~a~~~~yv~d~~~~Rv~~~~~s~~~~~  264 (495)
                      ++|.+|++.....  .-.   +   ....|.|| ++.. .+..++|++..+.++  .++|+++-+
T Consensus       206 g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~-~G~vllV~~~~~~~~--~l~S~DgW~  267 (334)
T 2p9w_A          206 RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV-GNESVLVGARAPYAI--SFRSWDNWK  267 (334)
T ss_dssp             SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE-TTEEEEEEEETTEEE--EEECSSTTS
T ss_pred             CeEEEEcCCCCcceeecccccCCcccccCccccccccc-CCEEEEEEcCCCCEE--EEECCCCcc
Confidence            9999999885333  111   1   12247886 5554 234559999887765  667766644

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.78  E-value=3.4e-07  Score=89.53  Aligned_cols=154  Identities=10%  Similarity=0.068  Sum_probs=105.2

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCC----CEEEEEc
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN----MAIRKIS  158 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N----~rIrk~d  158 (495)
                      ..|.+++++++|+||+++..+..+ .++.-.. +..-...    ...-..|.+|++|++|+|||++..+    +.|.+++
T Consensus        45 ~~~~~~~~~~~g~l~~~~~~~~~i-~~~d~~~-~~~~~~~----~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           45 LQLEGLNFDRQGQLFLLDVFEGNI-FKINPET-KEIKRPF----VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEE-EEECTTT-CCEEEEE----ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             ccccCcEECCCCCEEEEECCCCEE-EEEeCCC-CcEEEEe----eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            368999999999999999877744 4443211 1100000    0012468999999999999999877    7999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC------CCeEEEEECCCCceee-CCCCCC
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG------NQAIREIQLHDDDCSD-NYDDTF  229 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g------N~rI~~~d~~g~~~~~-~~~~g~  229 (495)
                      .++  +..+....              .....|.+|+ ++++|+|||++..      +..|.++++++..+.. ......
T Consensus       119 ~~~~~~~~~~~~~--------------~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  183 (333)
T 2dg1_A          119 ENGDNLQDIIEDL--------------STAYCIDDMV-FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV  183 (333)
T ss_dssp             TTSCSCEEEECSS--------------SSCCCEEEEE-ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS
T ss_pred             CCCCEEEEEEccC--------------ccCCcccceE-ECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCc
Confidence            766  44232110              0124688888 6889999999975      5789999988754432 223346


Q ss_pred             cceEEEEecCcCeEEEEEccCCceEEEee
Q 011014          230 HLGIFVLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       230 P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      |.+++++.. +..+|+++...++|..+-.
T Consensus       184 ~~~i~~~~d-g~~l~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          184 ANGIALSTD-EKVLWVTETTANRLHRIAL  211 (333)
T ss_dssp             EEEEEECTT-SSEEEEEEGGGTEEEEEEE
T ss_pred             ccceEECCC-CCEEEEEeCCCCeEEEEEe
Confidence            899999862 3468999988888855444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.74  E-value=3.4e-06  Score=81.92  Aligned_cols=152  Identities=16%  Similarity=0.201  Sum_probs=97.6

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEcC-CCC--ccccccCCC-cCccccCCcceEEEcCCCC-EEEEEC-CCCEEE
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAG-SPE--GYYGHVDGR-PRGARMNHPKGLAVDDRGN-IYIADT-MNMAIR  155 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaG-s~~--g~~G~~dG~-~~~a~f~~P~GIAVD~dGn-IYVAD~-~N~rIr  155 (495)
                      ..|.+++++++|+ |||++..++ .+.++.. +..  .......+. ........|.+++++++|+ |||++. .+++|.
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNS-AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTT-EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCC-EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            3689999999987 999998777 4444432 221  111110110 0011123488999999987 999994 478899


Q ss_pred             EEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee---C---CC
Q 011014          156 KISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD---N---YD  226 (495)
Q Consensus       156 k~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~---~---~~  226 (495)
                      ++|...   +.++...                 -..|.++++......||+++. ++.|..+++....+..   .   ..
T Consensus       168 ~~d~~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~  229 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQNT-----------------GKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGK  229 (353)
T ss_dssp             EEETTTTEEEEEECCC-----------------CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSS
T ss_pred             EEcCCCCceEEEecCC-----------------CCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCC
Confidence            999654   3333100                 124677885445556888876 6889999988766542   1   12


Q ss_pred             CCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          227 DTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       227 ~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      ...+.+++++.. +..+|+++...+.|.
T Consensus       230 ~~~~~~~~~s~d-g~~l~~~~~~~~~v~  256 (353)
T 3vgz_A          230 EHFFINISLDTA-RQRAFITDSKAAEVL  256 (353)
T ss_dssp             CCCEEEEEEETT-TTEEEEEESSSSEEE
T ss_pred             CcccceEEECCC-CCEEEEEeCCCCEEE
Confidence            335788999863 456899998888884

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.73  E-value=3e-07  Score=93.71  Aligned_cols=167  Identities=10%  Similarity=-0.019  Sum_probs=104.1

Q ss_pred             CCceEEEeecCCCCCCCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCc--cccccCCCcCccccCCcceEEEcC----
Q 011014           68 GGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEG--YYGHVDGRPRGARMNHPKGLAVDD----  140 (495)
Q Consensus        68 ~G~~~~~~~~G~~~~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g--~~G~~dG~~~~a~f~~P~GIAVD~----  140 (495)
                      +|+.++....+   +..|.+|+++++|+ |||++.. . .+.++......  ...... .........|.|||+++    
T Consensus         6 ~g~~~~~va~~---l~~P~~i~~~pdG~~l~V~e~~-G-~i~~~~~~g~~~~~~~~~~-~v~~~g~~g~~gia~~pdf~~   79 (353)
T 2g8s_A            6 ATVNVEVLQDK---LDHPWALAFLPDNHGMLITLRG-G-ELRHWQAGKGLSAPLSGVP-DVWAHGQGGLLDVVLAPDFAQ   79 (353)
T ss_dssp             CCSEEEEEEEE---ESSEEEEEECSTTCCEEEEETT-T-EEEEEETTTEECCCCBSCC-CCCCSTTCSEEEEEECTTHHH
T ss_pred             CCcEEEEEECC---CCCcEEEEEcCCCCEEEEEeCC-c-eEEEEeCCCceeeEecCCc-ccccCCCCCceeEEECCCCCC
Confidence            45555544432   45899999999999 9999985 3 45554322100  011000 01112235678999998    


Q ss_pred             CCCEEEEECC-------CCEEEEEcCCC-------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC
Q 011014          141 RGNIYIADTM-------NMAIRKISDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR  206 (495)
Q Consensus       141 dGnIYVAD~~-------N~rIrk~d~~G-------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~  206 (495)
                      +|.|||+++.       .++|.+++.++       ..++.-+.          +........+.+|+ ++++|.|||+..
T Consensus        80 ~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~----------p~~~~~~h~~~~l~-~~pdG~Lyv~~G  148 (353)
T 2g8s_A           80 SRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQM----------PKLSTGNHFGGRLV-FDGKGYLFIALG  148 (353)
T ss_dssp             HCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECS----------SCCBSSSCCCCCEE-ECSSSEEEEEEC
T ss_pred             CCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEEC----------CCCCCCcccCccEE-ECCCCcEEEEEC
Confidence            5899999875       56898887321       12221110          00112345678888 789999999963


Q ss_pred             C-------------CCeEEEEECCCCce--------------eeCCCCCCcceEEEEecCcCeEEEEEccCCc
Q 011014          207 G-------------NQAIREIQLHDDDC--------------SDNYDDTFHLGIFVLVAAAFFGYMLALLQRR  252 (495)
Q Consensus       207 g-------------N~rI~~~d~~g~~~--------------~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~R  252 (495)
                      .             .++|.+|+++|...              .+..+...|.|+++|.. .+.+|+++...+.
T Consensus       149 d~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~-~g~l~~~d~g~~~  220 (353)
T 2g8s_A          149 ENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPW-SNALWLNEHGPRG  220 (353)
T ss_dssp             CTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETT-TTEEEEEEECSBS
T ss_pred             CCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECC-CCCEEEEecCCCC
Confidence            3             35899999998621              12233345999999963 4689999987653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.71  E-value=6.1e-07  Score=92.20  Aligned_cols=156  Identities=16%  Similarity=0.096  Sum_probs=100.5

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCc-cccccCCCcCccccCCcceEEEcC----CCCEEEEEC--CCCEE
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEG-YYGHVDGRPRGARMNHPKGLAVDD----RGNIYIADT--MNMAI  154 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g-~~G~~dG~~~~a~f~~P~GIAVD~----dGnIYVAD~--~N~rI  154 (495)
                      +..|++|++.+||.|||++....++..+-...... ....... ........|.|||+++    +|.|||+.+  ..++|
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~-v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPG-VSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT-CCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCc-eeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            34899999999999999998555344432222111 0110010 1122456789999997    488999865  46789


Q ss_pred             EEEcCCC----------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEE-------------CCCCeE
Q 011014          155 RKISDTG----------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID-------------RGNQAI  211 (495)
Q Consensus       155 rk~d~~G----------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD-------------~gN~rI  211 (495)
                      .++..++          ..++.-+..          .  ........|+ ++.+|.|||+.             ...++|
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p----------~--~~~H~g~~l~-fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~I  176 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIP----------K--GVIHNGGRIA-FGPDKMLYAGTGESGDTGLSQDRKSLGGKI  176 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEEC----------C--CSSCCCCCEE-ECTTSCEEEECBCTTCGGGTTCTTCSTTCE
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCC----------C--CCCccCcccc-CCCCCCEEEEECCCCCCccccCCCCCCCEE
Confidence            9987332          222221100          0  1234566788 79999999994             235899


Q ss_pred             EEEECCCCce---------eeCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          212 REIQLHDDDC---------SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       212 ~~~d~~g~~~---------~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .+|+++|...         .+..+...|.|++++.  .+.+|+++......
T Consensus       177 lRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp--~G~L~~~d~g~~~~  225 (347)
T 3das_A          177 LRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDD--KQRLFASEFGQDTW  225 (347)
T ss_dssp             EEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECT--TCCEEEEECCSSSC
T ss_pred             EEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECC--CCCEEEEecCCCCC
Confidence            9999998621         2334445699999997  47899999876553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.65  E-value=5.5e-07  Score=95.31  Aligned_cols=169  Identities=11%  Similarity=0.062  Sum_probs=106.2

Q ss_pred             cCCceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCc-cc-cccCCCcCccccCCcceEEEcC----
Q 011014           67 EGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEG-YY-GHVDGRPRGARMNHPKGLAVDD----  140 (495)
Q Consensus        67 ~~G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g-~~-G~~dG~~~~a~f~~P~GIAVD~----  140 (495)
                      ..++.++....+   +..|++|+++++|.|||++....++..+....... .. ...+..........+.|||+++    
T Consensus        14 ~~gf~~~~~a~~---l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~   90 (454)
T 1cru_A           14 SENFDKKVILSN---LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKN   90 (454)
T ss_dssp             CTTSCEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTT
T ss_pred             CCCeEEEEEECC---CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCc
Confidence            445666655543   45899999999999999998765344443222111 01 1101000001234566999998    


Q ss_pred             CCCEEEEECC------------CCEEEEEcCC---C-c---EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeE
Q 011014          141 RGNIYIADTM------------NMAIRKISDT---G-V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL  201 (495)
Q Consensus       141 dGnIYVAD~~------------N~rIrk~d~~---G-V---~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~L  201 (495)
                      +|.|||+++.            .++|.+++.+   + +   .++.-+..            ......+.+|+ ++.+|.|
T Consensus        91 ~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p------------~~~~H~~~~l~-f~pDG~L  157 (454)
T 1cru_A           91 NPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP------------SSKDHQSGRLV-IGPDQKI  157 (454)
T ss_dssp             SCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC------------CCSSCCEEEEE-ECTTSCE
T ss_pred             CCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCC------------CCCCCCCCeEe-ECCCCeE
Confidence            7889999974            4689988732   1 1   22321100            01245688898 7999999


Q ss_pred             EEEEC--C------------------------------CCeEEEEECCCCc------------eeeCCCCCCcceEEEEe
Q 011014          202 LVIDR--G------------------------------NQAIREIQLHDDD------------CSDNYDDTFHLGIFVLV  237 (495)
Q Consensus       202 yVaD~--g------------------------------N~rI~~~d~~g~~------------~~~~~~~g~P~GIAvd~  237 (495)
                      ||+..  +                              ..+|.+|+++|..            -.+..+...|.|++++.
T Consensus       158 yv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp  237 (454)
T 1cru_A          158 YYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP  237 (454)
T ss_dssp             EEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT
T ss_pred             EEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC
Confidence            99843  2                              3689999999862            12234445699999997


Q ss_pred             cCcCeEEEEEccCCce
Q 011014          238 AAAFFGYMLALLQRRV  253 (495)
Q Consensus       238 ~a~~~~yv~d~~~~Rv  253 (495)
                        .+.+|+++......
T Consensus       238 --~G~L~~~d~g~~~~  251 (454)
T 1cru_A          238 --NGKLLQSEQGPNSD  251 (454)
T ss_dssp             --TSCEEEEEECSSSC
T ss_pred             --CCCEEEEecCCCCC
Confidence              47899999876533

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.61  E-value=1.7e-06  Score=86.08  Aligned_cols=146  Identities=13%  Similarity=0.049  Sum_probs=98.0

Q ss_pred             CCceEEEEcCCCcEEEEECCC-----CeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEE
Q 011014           83 MEPFSVAVSPSGELLVLDSEN-----NSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRK  156 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n-----~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk  156 (495)
                      ..+.++++|++|++||++...     ...+..+. .  +..-.     ....+..|.+|+++++|+ |||+|+.+++|.+
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~--g~~~~-----~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K--GKVTK-----LFADISIPNSICFSPDGTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T--TEEEE-----EEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C--CcEEE-----eeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence            468899999999999998632     12333333 2  11110     011345688999999996 9999999999999


Q ss_pred             EcC---CC-c----EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCC-CC
Q 011014          157 ISD---TG-V----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY-DD  227 (495)
Q Consensus       157 ~d~---~G-V----~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~-~~  227 (495)
                      ++.   +| .    ..+....              .....|.+++ +|.+|+|||++.++++|.++++++....... ..
T Consensus       206 ~d~~~~~Gl~~~~~~~~~~~~--------------~~~~~p~gi~-~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~  270 (326)
T 2ghs_A          206 VPLDARTGLPTGKAEVFIDST--------------GIKGGMDGSV-CDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPG  270 (326)
T ss_dssp             EEBCTTTCCBSSCCEEEEECT--------------TSSSEEEEEE-ECTTSCEEEEEETTTEEEEECTTCCEEEEEECSC
T ss_pred             EEcccccCCcccCceEEEECC--------------CCCCCCCeeE-ECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCC
Confidence            984   34 1    1221100              0113577888 7999999999998899999999887654432 22


Q ss_pred             CCcceEEEEecCcCeEEEEEccCC
Q 011014          228 TFHLGIFVLVAAAFFGYMLALLQR  251 (495)
Q Consensus       228 g~P~GIAvd~~a~~~~yv~d~~~~  251 (495)
                      ..|.+++++...+..+||+.....
T Consensus       271 ~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          271 KQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             CCcEEEEEecCCCCEEEEEecCCC
Confidence            358888887333457888876553

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.60  E-value=1e-06  Score=87.68  Aligned_cols=148  Identities=10%  Similarity=0.016  Sum_probs=98.6

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCC-ccccccCCCcCccccCCcceEEEcCCCCEEEEECC------CCEEE
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPE-GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM------NMAIR  155 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~-g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~------N~rIr  155 (495)
                      ..|.+|+++++|++||+..  +++..+-..+.. .......   .....+.|.++++|++|+|||++..      ..+|.
T Consensus        90 ~~v~~i~~~~dg~l~v~~~--~gl~~~d~~~g~~~~~~~~~---~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIASD--DGLFLRDTATGVLTLHAELE---SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SCEEEEEEEETTEEEEEET--TEEEEEETTTCCEEEEECSS---TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred             CcceEEEEeCCCeEEEEEC--CCEEEEECCCCcEEEEeeCC---CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence            3689999999999999973  333333221211 0111000   0112456889999999999999863      46899


Q ss_pred             EEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECC--CC-ce-----e-e-
Q 011014          156 KISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH--DD-DC-----S-D-  223 (495)
Q Consensus       156 k~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~--g~-~~-----~-~-  223 (495)
                      +++ +| +..+..                 .+..|++++ .+.+| .|||+|..+++|.+++.+  +. .+     . . 
T Consensus       165 ~~~-~g~~~~~~~-----------------~~~~~~~i~-~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~  225 (326)
T 2ghs_A          165 HVA-KGKVTKLFA-----------------DISIPNSIC-FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS  225 (326)
T ss_dssp             EEE-TTEEEEEEE-----------------EESSEEEEE-ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             EEe-CCcEEEeeC-----------------CCcccCCeE-EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC
Confidence            998 67 433321                 123577888 56666 699999999999999975  32 21     1 1 


Q ss_pred             CCCCCCcceEEEEecCcCeEEEEEccCCceEEE
Q 011014          224 NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       224 ~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                      ....+.|.|+++|.  .+++||+...+++|..+
T Consensus       226 ~~~~~~p~gi~~d~--~G~lwva~~~~~~v~~~  256 (326)
T 2ghs_A          226 TGIKGGMDGSVCDA--EGHIWNARWGEGAVDRY  256 (326)
T ss_dssp             TTSSSEEEEEEECT--TSCEEEEEETTTEEEEE
T ss_pred             CCCCCCCCeeEECC--CCCEEEEEeCCCEEEEE
Confidence            22346799999996  56899999888888544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.59  E-value=2.6e-06  Score=83.61  Aligned_cols=165  Identities=16%  Similarity=0.137  Sum_probs=104.5

Q ss_pred             CCceEEEEcCCCcEEEEECC-CCeeEEEEcC-CCC-ccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEc
Q 011014           83 MEPFSVAVSPSGELLVLDSE-NNSRPKLVAG-SPE-GYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKIS  158 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~-n~~ii~ivaG-s~~-g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d  158 (495)
                      ..|.+|++++||.||+++.. ....+.++.- ... .....     .......|.+|+++++|+ ||+++..++.|.+++
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~-----~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNT-----VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEE-----EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeee-----eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            47999999999999999863 2334444321 110 01110     011245799999999998 999998888888888


Q ss_pred             --CCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC-CCceee-----CCCCCC
Q 011014          159 --DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCSD-----NYDDTF  229 (495)
Q Consensus       159 --~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~-g~~~~~-----~~~~g~  229 (495)
                        .+| ...+.....   .+  .++........|.+++ ++++|.||+++.++++|+.++++ +..+..     ......
T Consensus       115 ~~~~g~~~~~~~~~~---~~--~~p~~~~~~~~~~~~~-~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~  188 (347)
T 3hfq_A          115 IAADGALTLTDTVQH---SG--HGPRPEQDGSHIHYTD-LTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFG  188 (347)
T ss_dssp             ECTTSCEEEEEEEEC---CC--CCSSTTCSSCCEEEEE-ECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCC
T ss_pred             eCCCCCeeecceeec---CC--CCCCccccCCCceEEE-ECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCC
Confidence              445 332221100   00  0111122345678888 67888899999999999999987 332221     222235


Q ss_pred             cceEEEEecCcCeEEEEEccCCceEEEeeC
Q 011014          230 HLGIFVLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       230 P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                      |.+++++.. +..+|+++...++|......
T Consensus       189 p~~~~~spd-g~~l~v~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          189 PRHLVFSPD-GQYAFLAGELSSQIASLKYD  217 (347)
T ss_dssp             EEEEEECTT-SSEEEEEETTTTEEEEEEEE
T ss_pred             CceEEECCC-CCEEEEEeCCCCEEEEEEec
Confidence            888999862 34689999988888544433

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.58  E-value=1.2e-06  Score=86.10  Aligned_cols=161  Identities=14%  Similarity=0.135  Sum_probs=100.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcC---
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD---  159 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~---  159 (495)
                      .|.+++++++|+||+++..++ .+.++.-...+....... .....-..|.+|+++++|+ |||++..+++|.+++.   
T Consensus       142 ~~~~~~~spdg~l~v~~~~~~-~v~~~~~~~~g~~~~~~~-~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~  219 (347)
T 3hfq_A          142 HIHYTDLTPDNRLAVIDLGSD-KVYVYNVSDAGQLSEQSV-LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ  219 (347)
T ss_dssp             CEEEEEECTTSCEEEEETTTT-EEEEEEECTTSCEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CceEEEECCCCcEEEEeCCCC-EEEEEEECCCCcEEEeee-EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            478899999999999998877 344332111111110000 0000123688999999998 9999999999988873   


Q ss_pred             CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCCC-c---eeeC-CCCCCcce
Q 011014          160 TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDD-D---CSDN-YDDTFHLG  232 (495)
Q Consensus       160 ~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-LyVaD~gN~rI~~~d~~g~-~---~~~~-~~~g~P~G  232 (495)
                      +| +..+......  .      ........|.+++ ++++|. |||++..++.|.+++++.. .   +... .....|.+
T Consensus       220 ~g~~~~~~~~~~~--~------~~~~~~~~~~~i~-~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~  290 (347)
T 3hfq_A          220 TGAFTQLGIVKTI--P------ADYTAHNGAAAIR-LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRD  290 (347)
T ss_dssp             TTEEEEEEEEESS--C------TTCCSCCEEEEEE-ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCE
T ss_pred             CCceEEeeeeeec--C------CCCCCCCcceeEE-ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCe
Confidence            35 2222110000  0      0011124688898 577775 8999999999999998632 1   1122 22346999


Q ss_pred             EEEEecCcCeEEEEEccCCceEEE
Q 011014          233 IFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       233 IAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                      ++++. .+..+|+++...++|...
T Consensus       291 ~~~sp-dg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          291 FDLDP-TEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEE
T ss_pred             EEECC-CCCEEEEEEcCCCcEEEE
Confidence            99986 345789999988888433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.46  E-value=2.1e-06  Score=87.67  Aligned_cols=166  Identities=10%  Similarity=-0.004  Sum_probs=104.4

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEEcCCC-CccccccCCCc-CccccCCcceEEE---cCCCCEEE-EEC------
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLVAGSP-EGYYGHVDGRP-RGARMNHPKGLAV---DDRGNIYI-ADT------  149 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~-~g~~G~~dG~~-~~a~f~~P~GIAV---D~dGnIYV-AD~------  149 (495)
                      ..|.+++.|+ +|.+||++-.+..+..+-.... .-.. ..++.. ......+|.||.+   |++|.|+| +|.      
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            4799999986 7889999988885655533211 0011 111100 0112346789999   78999998 663      


Q ss_pred             ------CCCEEEEEcCC----C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEEC
Q 011014          150 ------MNMAIRKISDT----G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQL  216 (495)
Q Consensus       150 ------~N~rIrk~d~~----G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~  216 (495)
                            +.+.|.+||.+    |  +..+ ....-. .+..  ......+..+.+|+ +|.+|++||+|... ..|.++++
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~-~~~~--~~~g~~~~~~nDva-vD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQ-DEFE--KKAGKRPFGVVQSA-QDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHH-HHHH--HHHSSCCEEEEEEE-ECTTSCEEEEEEESSCEEEEECT
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEe-cCcccc-cccc--ccccccccCCceeE-ECCCCCEEEeCCCCCCeEEEEeC
Confidence                  46889999955    5  3332 210000 0000  00001244688999 79999999999999 99999999


Q ss_pred             CCCceee---CCC----CCCcceEEEEecCcCeEEEEEccCCceEEE
Q 011014          217 HDDDCSD---NYD----DTFHLGIFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       217 ~g~~~~~---~~~----~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                      +|.....   ...    .-.+.||++... +..+++.+. .+|+.++
T Consensus       167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pd-g~~Liv~~~-~g~L~~f  211 (334)
T 2p9w_A          167 DGKTVSTFAWESGNGGQRPGYSGITFDPH-SNKLIAFGG-PRALTAF  211 (334)
T ss_dssp             TSCCEEEEEECCCCSSSCCSCSEEEEETT-TTEEEEESS-SSSEEEE
T ss_pred             CCCEEeeeeecCCCcccccCcceEEEeCC-CCEEEEEcC-CCeEEEE
Confidence            9985542   111    113789999962 456777777 8999433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.44  E-value=6e-05  Score=73.07  Aligned_cols=150  Identities=11%  Similarity=0.103  Sum_probs=98.5

Q ss_pred             ceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCC-C
Q 011014           85 PFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-G  161 (495)
Q Consensus        85 P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~-G  161 (495)
                      |.+++++++|+ ||+++......+.++.............     .-..|.+++++++|+ ||+++. ++.|.++|.. +
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~  216 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-----TGKMSTGLALDSEGKRLYTTNA-DGELITIDTADN  216 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-----CCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTT
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-----CCCccceEEECCCCCEEEEEcC-CCeEEEEECCCC
Confidence            89999999887 8999854343555554322111111110     113588999999987 888876 7899999954 4


Q ss_pred             --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCCCCcceEEEEecC
Q 011014          162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAA  239 (495)
Q Consensus       162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~g~P~GIAvd~~a  239 (495)
                        +..+..+..             .....|.++++..+.+.||+++..++.|.++++....+......+.|.+++++.. 
T Consensus       217 ~~~~~~~~~~~-------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~d-  282 (353)
T 3vgz_A          217 KILSRKKLLDD-------------GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPA-  282 (353)
T ss_dssp             EEEEEEECCCS-------------SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETT-
T ss_pred             eEEEEEEcCCC-------------CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCC-
Confidence              333322111             1123577788555555699999999999999997766543323345788888763 


Q ss_pred             cCeEEEEEccCCceE
Q 011014          240 AFFGYMLALLQRRVQ  254 (495)
Q Consensus       240 ~~~~yv~d~~~~Rv~  254 (495)
                      +..+|+++...++|.
T Consensus       283 g~~l~v~~~~~~~v~  297 (353)
T 3vgz_A          283 RNEAYVTHRQAGKVS  297 (353)
T ss_dssp             TTEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCeEE
Confidence            346899998888884

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.40  E-value=3.2e-06  Score=86.03  Aligned_cols=173  Identities=10%  Similarity=0.059  Sum_probs=101.4

Q ss_pred             CCceEEEEcCCCcEEEEECCC-------------CeeEEEEc-CCC-Cc--ccccc--CCCcCccccCCcceEEEcC-CC
Q 011014           83 MEPFSVAVSPSGELLVLDSEN-------------NSRPKLVA-GSP-EG--YYGHV--DGRPRGARMNHPKGLAVDD-RG  142 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n-------------~~ii~iva-Gs~-~g--~~G~~--dG~~~~a~f~~P~GIAVD~-dG  142 (495)
                      ..|.+|++++||.|||+....             .+++++-. |+. .+  ..+..  ....-...+.+|.||++|+ +|
T Consensus       130 h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g  209 (353)
T 2g8s_A          130 HFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSN  209 (353)
T ss_dssp             CCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTT
T ss_pred             ccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCC
Confidence            458899999999999997432             24555532 221 00  00000  0011123578899999999 89


Q ss_pred             CEEEEECCCC---EEEEEcCCCcE---EEecCcc--cCCCC-----CCCCCCc-C---cccCCCceEEEECC------CC
Q 011014          143 NIYIADTMNM---AIRKISDTGVT---TIAGGKW--SRGVG-----HVDGPSE-D---AKFSNDFDVVYVGS------SC  199 (495)
Q Consensus       143 nIYVAD~~N~---rIrk~d~~GV~---tiaGg~~--G~~~g-----~~dG~~~-~---a~f~~P~gVa~vd~------~G  199 (495)
                      +||++|.+.+   +|.++...+-.   .+.++..  +....     ...+... .   .....|.++++...      +|
T Consensus       210 ~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g  289 (353)
T 2g8s_A          210 ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQ  289 (353)
T ss_dssp             EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTT
T ss_pred             CEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCC
Confidence            9999998753   56665543310   0011100  00000     0000000 0   00136888885432      58


Q ss_pred             eEEEEECCCCeEEEEECCCCcee----eC-CCCCCcceEEEEecCcCeEEEE-EccCCceEEEe
Q 011014          200 SLLVIDRGNQAIREIQLHDDDCS----DN-YDDTFHLGIFVLVAAAFFGYML-ALLQRRVQAMF  257 (495)
Q Consensus       200 ~LyVaD~gN~rI~~~d~~g~~~~----~~-~~~g~P~GIAvd~~a~~~~yv~-d~~~~Rv~~~~  257 (495)
                      .+||+|..+++|.++++++....    .. ...+.|.+|+++.  .+.+||+ +..+.||.++.
T Consensus       290 ~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p--dG~lyv~td~~~g~I~ri~  351 (353)
T 2g8s_A          290 KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP--DGYLYVLTDESSGELLKVS  351 (353)
T ss_dssp             EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT--TSCEEEEECSTTEEEEEEE
T ss_pred             cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC--CCcEEEEEeCCCCEEEEEe
Confidence            99999999999999999875322    12 2235799999986  5679997 55677776553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.37  E-value=1.9e-05  Score=78.07  Aligned_cols=162  Identities=10%  Similarity=0.115  Sum_probs=100.7

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeeEEEEc-CCCCc----c-cccc--CCCcCccccCCcceEEEcCCCC-EEEEECCCCE
Q 011014           84 EPFSVAVSPSGE-LLVLDSENNSRPKLVA-GSPEG----Y-YGHV--DGRPRGARMNHPKGLAVDDRGN-IYIADTMNMA  153 (495)
Q Consensus        84 ~P~GIAVd~dG~-LyVaDs~n~~ii~iva-Gs~~g----~-~G~~--dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~r  153 (495)
                      .|++++++++|+ ||+++..++ .+.++. ....+    . .-..  ........-..|.+++++++|+ |||++..+++
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~-~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  234 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTD-QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT  234 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTT-EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred             cceEEEECCCCCEEEEEeCCCC-EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence            357899999997 999998777 334332 11111    0 0000  0000011235688999999997 9999988999


Q ss_pred             EEEEcC-CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECC-CCeEEEEECC--CCc---eeeC
Q 011014          154 IRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRG-NQAIREIQLH--DDD---CSDN  224 (495)
Q Consensus       154 Irk~d~-~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~g-N~rI~~~d~~--g~~---~~~~  224 (495)
                      |.+++. +| +..+.....           ....+..|.+|+ ++++| .|||++.+ ++.|..++.+  +..   +...
T Consensus       235 v~v~~~~~g~~~~~~~~~~-----------~~~~~~~~~~i~-~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~  302 (361)
T 3scy_A          235 VIAFRYADGMLDEIQTVAA-----------DTVNAQGSGDIH-LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ  302 (361)
T ss_dssp             EEEEEEETTEEEEEEEEES-----------CSSCCCCEEEEE-ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEEEecCCceEEeEEEec-----------CCCCCCCcccEE-ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence            999984 44 322211100           011245678888 56666 58899998 8899998875  222   2222


Q ss_pred             CCCCCcceEEEEecCcCeEEEEEccCCceEEEeeC
Q 011014          225 YDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       225 ~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                      .....|.+++++. .+..+|+++...++|.....+
T Consensus       303 ~~g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          303 LTGIHPRNFIITP-NGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             ECSSCCCEEEECT-TSCEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCCceEEECC-CCCEEEEEECCCCCEEEEEEE
Confidence            2244699999986 345789999888888543333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.35  E-value=3.4e-05  Score=76.36  Aligned_cols=154  Identities=12%  Similarity=-0.024  Sum_probs=101.4

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      ..+.|++++ .+.||+++..++ .+.++. .+. ...+...-    . ...+.||+.| .+.|||+| +.++|.++|+..
T Consensus        66 ~fgeGi~~~-g~~lyv~t~~~~-~v~viD~~t~-~v~~~i~~----g-~~~g~glt~D-g~~l~vs~-gs~~l~viD~~t  135 (266)
T 2iwa_A           66 YFGEGLTLL-NEKLYQVVWLKN-IGFIYDRRTL-SNIKNFTH----Q-MKDGWGLATD-GKILYGSD-GTSILYEIDPHT  135 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEETTCS-EEEEEETTTT-EEEEEEEC----C-SSSCCEEEEC-SSSEEEEC-SSSEEEEECTTT
T ss_pred             cceEEEEEe-CCEEEEEEecCC-EEEEEECCCC-cEEEEEEC----C-CCCeEEEEEC-CCEEEEEC-CCCeEEEEECCC
Confidence            356788887 468999998887 444443 222 11111100    0 1134566655 34699999 688999999766


Q ss_pred             ---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CC------------
Q 011014          162 ---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NY------------  225 (495)
Q Consensus       162 ---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~------------  225 (495)
                         +.++.-+..+            .-+..|+++.+.  +|.||++....+.|.+||+....+.. ..            
T Consensus       136 ~~v~~~I~Vg~~~------------~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~  201 (266)
T 2iwa_A          136 FKLIKKHNVKYNG------------HRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEG  201 (266)
T ss_dssp             CCEEEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTT
T ss_pred             CcEEEEEEECCCC------------cccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccc
Confidence               4555322111            124568888865  57999999999999999998866532 11            


Q ss_pred             --CCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCC
Q 011014          226 --DDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       226 --~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                        ....|.|||++.+ +..+||+.....+|..+-+...
T Consensus       202 ~~~~~v~nGIa~~~~-~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          202 FRDIDVLNGIAWDQE-NKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             CTTCCCEEEEEEETT-TTEEEEEETTCSEEEEEEEEEC
T ss_pred             ccccCceEEEEEcCC-CCEEEEECCCCCeEEEEEEecc
Confidence              1135799999964 4579999999999966655443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.31  E-value=1.1e-05  Score=83.01  Aligned_cols=115  Identities=10%  Similarity=0.062  Sum_probs=80.8

Q ss_pred             CCcceEEEcC--CC--CEEEEECC--CCEE--EEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeE
Q 011014          131 NHPKGLAVDD--RG--NIYIADTM--NMAI--RKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL  201 (495)
Q Consensus       131 ~~P~GIAVD~--dG--nIYVAD~~--N~rI--rk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~L  201 (495)
                      .+|.||.+..  +|  +|||+|..  +.+|  .+++.++ ..+++..-.            ...|+.|++++ ++++|.+
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~------------g~~~~~pND~~-v~~~G~f  178 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR------------HKLLPSVNDIV-AVGPEHF  178 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC------------CTTCSSEEEEE-EEETTEE
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc------------cCCCCCCceEE-EeCCCCE
Confidence            4899999955  35  59999987  4554  4555655 444332111            12588999999 6889999


Q ss_pred             EEEEC-----------------CCCeEEEEECCCCceeeCCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCC
Q 011014          202 LVIDR-----------------GNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       202 yVaD~-----------------gN~rI~~~d~~g~~~~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                      ||++.                 ..++|.++++. .......+..+|.|||+.. .+..+||++...++|.......
T Consensus       179 yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-~~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          179 YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-DVRVVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-CCEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred             EecCCcEeCCcccccchhhccCCccEEEEEECC-eEEEeecCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECC
Confidence            99875                 34689999874 2222244566899999986 3458999999999996665553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.21  E-value=3.4e-05  Score=74.58  Aligned_cols=155  Identities=14%  Similarity=0.144  Sum_probs=97.0

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcC
Q 011014           82 GMEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD  159 (495)
Q Consensus        82 ~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~  159 (495)
                      ...|.+++++++|+ ||+++...+..+.++.-...+........ ....-..|.+++++++|+ |||++..++.|++++.
T Consensus       127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~  205 (331)
T 3u4y_A          127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVANLIGNSIGILET  205 (331)
T ss_dssp             CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence            35789999999996 99999876641333321111111000000 001124589999999998 9999999999999995


Q ss_pred             C-C-c-EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCCCceee----CCC---CC
Q 011014          160 T-G-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDDDCSD----NYD---DT  228 (495)
Q Consensus       160 ~-G-V-~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-LyVaD~gN~rI~~~d~~g~~~~~----~~~---~g  228 (495)
                      . + + ..+.--.               .-..|.+++ ++++|. |||++.+.+.|.++++.+..+..    ...   ..
T Consensus       206 ~~~~~~~~~~~~~---------------~~~~~~~~~-~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  269 (331)
T 3u4y_A          206 QNPENITLLNAVG---------------TNNLPGTIV-VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP  269 (331)
T ss_dssp             SSTTSCEEEEEEE---------------CSSCCCCEE-ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred             CCCcccceeeecc---------------CCCCCceEE-ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC
Confidence            4 3 2 1111000               013677888 566766 89999988999999998766521    111   11


Q ss_pred             C----cceEEEEecCcCeEEEEEccCCceE
Q 011014          229 F----HLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       229 ~----P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      .    ..++++.. .+..+|+++...+.|.
T Consensus       270 ~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~  298 (331)
T 3u4y_A          270 RPLFGANQMALNK-TETKLFISANISRELK  298 (331)
T ss_dssp             GGGTTCCCEEECT-TSSEEEEEETTTTEEE
T ss_pred             CCcccccceEECC-CCCEEEEecCCCCcEE
Confidence            1    13467775 3457889888888883

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.17  E-value=0.00018  Score=71.22  Aligned_cols=149  Identities=11%  Similarity=0.004  Sum_probs=97.8

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEcC-CCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVAG-SPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--  161 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~ivaG-s~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--  161 (495)
                      ..||+++ ++.||+++..++ .+.+++. +. ...+...-.      ..+.|++.| .+.||++|. .++|.++|+..  
T Consensus        89 geGit~~-g~~ly~ltw~~~-~v~v~D~~t~-~~~~ti~~~------~eG~glt~d-g~~L~~SdG-s~~i~~iDp~T~~  157 (262)
T 3nol_A           89 GEGISDW-KDKIVGLTWKNG-LGFVWNIRNL-RQVRSFNYD------GEGWGLTHN-DQYLIMSDG-TPVLRFLDPESLT  157 (262)
T ss_dssp             EEEEEEE-TTEEEEEESSSS-EEEEEETTTC-CEEEEEECS------SCCCCEEEC-SSCEEECCS-SSEEEEECTTTCS
T ss_pred             eeEEEEe-CCEEEEEEeeCC-EEEEEECccC-cEEEEEECC------CCceEEecC-CCEEEEECC-CCeEEEEcCCCCe
Confidence            4678887 468999998877 4444442 22 111111100      145688877 457999995 89999999765  


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee---C-----------CC
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD---N-----------YD  226 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~---~-----------~~  226 (495)
                       +.++.-+..|            ..+..++.+.++  +|.||+.....+.|.+||+....+..   .           ..
T Consensus       158 v~~~I~V~~~g------------~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~  223 (262)
T 3nol_A          158 PVRTITVTAHG------------EELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSP  223 (262)
T ss_dssp             EEEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSS
T ss_pred             EEEEEEeccCC------------ccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCc
Confidence             4555322111            123455667754  67999999999999999998876532   1           11


Q ss_pred             CCCcceEEEEecCcCeEEEEEccCCceEEEeeC
Q 011014          227 DTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       227 ~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                      ...|.|||.|.. ...+||+.-+=.++-.+-+.
T Consensus       224 ~~vlNGIA~dp~-~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          224 IDVLNGIAWDKE-HHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             CCCEEEEEEETT-TTEEEEEETTCSEEEEEEEE
T ss_pred             CCceEEEEEcCC-CCEEEEECCCCCceEEEEEe
Confidence            235899999974 46899999877777555443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.14  E-value=0.00013  Score=74.93  Aligned_cols=154  Identities=12%  Similarity=0.099  Sum_probs=93.2

Q ss_pred             CceEEEEcCCCcEEEEECC-------------CCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEEC
Q 011014           84 EPFSVAVSPSGELLVLDSE-------------NNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT  149 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~-------------n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~  149 (495)
                      ....|++++||.|||+...             ..+++++-. |+...-.-+.+...-...+.+|.||++|++|.||++|.
T Consensus       141 ~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          141 NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred             cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEec
Confidence            4566999999999999432             124455432 22000000001111233578999999999999999998


Q ss_pred             CCC---EEEEEcCCCcEEEecCcccCCCCCCCCCC-------cCccc----CCCceEEEECCCCeEEEEECCCCeEEEEE
Q 011014          150 MNM---AIRKISDTGVTTIAGGKWSRGVGHVDGPS-------EDAKF----SNDFDVVYVGSSCSLLVIDRGNQAIREIQ  215 (495)
Q Consensus       150 ~N~---rIrk~d~~GV~tiaGg~~G~~~g~~dG~~-------~~a~f----~~P~gVa~vd~~G~LyVaD~gN~rI~~~d  215 (495)
                      +..   +|.++...+       ..|-  .+..|..       -...+    ..|.|+++.  +|.+|+++..+.+|.++.
T Consensus       221 g~~~~deln~i~~G~-------nyGw--P~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~~~~l~~v~  289 (347)
T 3das_A          221 GQDTWDELNAIKPGD-------NYGW--PEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLRGERLWRIP  289 (347)
T ss_dssp             CSSSCEEEEEECTTC-------BCCT--TTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEESTTCSEEEEE
T ss_pred             CCCCCceeeEEcCCC-------EecC--CcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeeccccCCEEEEEE
Confidence            753   444443322       1111  0000100       00011    367899964  579999999999999999


Q ss_pred             CCCCce-----ee-CCCCCCcceEEEEecCcCeEEEEEccC
Q 011014          216 LHDDDC-----SD-NYDDTFHLGIFVLVAAAFFGYMLALLQ  250 (495)
Q Consensus       216 ~~g~~~-----~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~  250 (495)
                      +++...     .. ....+.|.+|+++.  .+.|||+....
T Consensus       290 ~~~~~~~~~~e~~l~~~~gR~~dv~~~p--DG~lyv~td~~  328 (347)
T 3das_A          290 LKGTAAAADPQAFLEGEYGRLRTVAPAG--GDKLWLVTSNT  328 (347)
T ss_dssp             EETTEESSCCEEESTTTSSCEEEEEEEE--TTEEEEEECTT
T ss_pred             ecCCceecceEEeecCCCCCccEEEECC--CCcEEEEEcCC
Confidence            876532     11 23456899999997  67899987643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.14  E-value=9.4e-05  Score=73.20  Aligned_cols=145  Identities=8%  Similarity=-0.037  Sum_probs=93.5

Q ss_pred             CceEEEEcCCCcEEEEEC--CCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014           84 EPFSVAVSPSGELLVLDS--ENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT  160 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs--~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~  160 (495)
                      .|.||+++++|.||++..  +.+ .+.++. .+.. ......-    ..-..+.||+++ .+.||+++..+++|.++|.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s-~v~~iD~~tg~-v~~~i~l----~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRS-SVRQVALQTGK-VENIHKM----DDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTC-EEEEEETTTCC-EEEEEEC----CTTCCEEEEEEE-TTEEEEEETTCSEEEEEETT
T ss_pred             CcccEEEeCCCeEEEECCCCCCC-EEEEEECCCCC-EEEEEec----CCCcceEEEEEe-CCEEEEEEecCCEEEEEECC
Confidence            589999999899999975  344 444443 2221 1111000    012345688888 45899999999999999965


Q ss_pred             C---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee---CCCCC----Cc
Q 011014          161 G---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD---NYDDT----FH  230 (495)
Q Consensus       161 G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~---~~~~g----~P  230 (495)
                      .   +.++.-+ .                ..+.+++  .+.+.|||+| +.++|.+||+.+.....   .+..+    .|
T Consensus        95 t~~v~~~i~~g-~----------------~~g~glt--~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~  154 (266)
T 2iwa_A           95 TLSNIKNFTHQ-M----------------KDGWGLA--TDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRL  154 (266)
T ss_dssp             TTEEEEEEECC-S----------------SSCCEEE--ECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             CCcEEEEEECC-C----------------CCeEEEE--ECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence            4   4555221 0                1235555  3457899999 68899999998855432   11112    46


Q ss_pred             ceEEEEecCcCeEEEEEccCCceEEEee
Q 011014          231 LGIFVLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       231 ~GIAvd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      .++...   .+.+|+.....+.|..+-.
T Consensus       155 nele~~---dg~lyvn~~~~~~V~vID~  179 (266)
T 2iwa_A          155 NELEYI---NGEVWANIWQTDCIARISA  179 (266)
T ss_dssp             EEEEEE---TTEEEEEETTSSEEEEEET
T ss_pred             eeEEEE---CCEEEEecCCCCeEEEEEC
Confidence            788777   3479999988888844433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.13  E-value=0.00024  Score=69.49  Aligned_cols=152  Identities=13%  Similarity=0.028  Sum_probs=99.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--  161 (495)
                      ...||+++ ++.||+++..++ .+.+++.......+...-.      ..+.|++.| .+.||++|. .++|.++|+..  
T Consensus        66 fgeGi~~~-~~~ly~ltw~~~-~v~v~D~~tl~~~~ti~~~------~~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t~~  135 (243)
T 3mbr_X           66 FGAGIVAW-RDRLIQLTWRNH-EGFVYDLATLTPRARFRYP------GEGWALTSD-DSHLYMSDG-TAVIRKLDPDTLQ  135 (243)
T ss_dssp             CEEEEEEE-TTEEEEEESSSS-EEEEEETTTTEEEEEEECS------SCCCEEEEC-SSCEEEECS-SSEEEEECTTTCC
T ss_pred             ceeEEEEe-CCEEEEEEeeCC-EEEEEECCcCcEEEEEeCC------CCceEEeeC-CCEEEEECC-CCeEEEEeCCCCe
Confidence            34677877 478999998887 4444443211111111100      146788876 468999995 89999999765  


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee----C-----------C
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD----N-----------Y  225 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~----~-----------~  225 (495)
                       +.++.-+..+            ..+...+.+.++  +|.||+..+..+.|.+||+....+..    .           .
T Consensus       136 ~~~~I~V~~~g------------~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~  201 (243)
T 3mbr_X          136 QVGSIKVTAGG------------RPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDS  201 (243)
T ss_dssp             EEEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCT
T ss_pred             EEEEEEEccCC------------cccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCC
Confidence             4455322111            123445566644  77999999999999999998876532    0           1


Q ss_pred             CCCCcceEEEEecCcCeEEEEEccCCceEEEeeCC
Q 011014          226 DDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       226 ~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                      ....|.|||.|.. ...+||+..+=.++-.+-+..
T Consensus       202 ~~~vlNGIA~d~~-~~~lfVTGK~wp~~~~v~~~~  235 (243)
T 3mbr_X          202 TNDVLNGIAFDAE-HDRLFVTGKRWPMLYEIRLTP  235 (243)
T ss_dssp             TSSCEEEEEEETT-TTEEEEEETTCSEEEEEEECC
T ss_pred             cCCceEEEEEcCC-CCEEEEECCCCCcEEEEEEec
Confidence            1236899999974 468999998877776665544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.12  E-value=0.0003  Score=69.16  Aligned_cols=158  Identities=9%  Similarity=0.083  Sum_probs=98.1

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCc-c-ccccC-CCcCccccCCcceEEEcCCC-CEEEEECC-CCEEEEE
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEG-Y-YGHVD-GRPRGARMNHPKGLAVDDRG-NIYIADTM-NMAIRKI  157 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g-~-~G~~d-G~~~~a~f~~P~GIAVD~dG-nIYVAD~~-N~rIrk~  157 (495)
                      ..+.||+++++|.++|++-.++++..+-...... . ..... .......=....|||+|+++ .|||+--. ..+|..+
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            4799999999999999998887444332121100 0 00000 00000001123799999977 58887644 3478888


Q ss_pred             c--CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC----CCCC-
Q 011014          158 S--DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN----YDDT-  228 (495)
Q Consensus       158 d--~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~----~~~g-  228 (495)
                      +  ..+  ++.+.. ..         ......+..+.+|++.+..+.|||....+++|..+|++|......    +..| 
T Consensus       150 ~g~~~~~~l~i~~~-~~---------~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l  219 (255)
T 3qqz_A          150 NGLLSSNELHISKD-KA---------LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGL  219 (255)
T ss_dssp             ESTTCSSCCEEEEC-HH---------HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGC
T ss_pred             cccccCCceeeecc-hh---------hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCc
Confidence            7  111  222210 00         000123457899998888999999999999999999999876541    1111 


Q ss_pred             -----CcceEEEEecCcCeEEEEEccCCce
Q 011014          229 -----FHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       229 -----~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                           -|.|||+|.  .+++||++=-| ++
T Consensus       220 ~~~~~qpEGia~d~--~G~lyIvsE~n-~~  246 (255)
T 3qqz_A          220 SHNIKQAEGVAMDA--SGNIYIVSEPN-RF  246 (255)
T ss_dssp             SSCCCSEEEEEECT--TCCEEEEETTT-EE
T ss_pred             ccccCCCCeeEECC--CCCEEEEcCCc-eE
Confidence                 389999998  56899996553 55

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.07  E-value=0.00011  Score=72.97  Aligned_cols=148  Identities=13%  Similarity=-0.007  Sum_probs=96.6

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC---
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG---  161 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G---  161 (495)
                      ..||+++ .+.||+++..++ .+.+++.......+...-.      ..++|++.| .+.||++| +.++|.++|+..   
T Consensus        98 geGit~~-g~~Ly~ltw~~~-~v~V~D~~Tl~~~~ti~~~------~eGwGLt~D-g~~L~vSd-Gs~~l~~iDp~T~~v  167 (268)
T 3nok_A           98 AEGLASD-GERLYQLTWTEG-LLFTWSGMPPQRERTTRYS------GEGWGLCYW-NGKLVRSD-GGTMLTFHEPDGFAL  167 (268)
T ss_dssp             EEEEEEC-SSCEEEEESSSC-EEEEEETTTTEEEEEEECS------SCCCCEEEE-TTEEEEEC-SSSEEEEECTTTCCE
T ss_pred             eeEEEEe-CCEEEEEEccCC-EEEEEECCcCcEEEEEeCC------CceeEEecC-CCEEEEEC-CCCEEEEEcCCCCeE
Confidence            4678887 468999998877 4455443211111111100      135788877 35799999 599999999765   


Q ss_pred             cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee---C------------CC
Q 011014          162 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD---N------------YD  226 (495)
Q Consensus       162 V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~---~------------~~  226 (495)
                      +.++.-+..+            ..+..++.+.++  +|.||+..+..+.|.+||+....+..   .            ..
T Consensus       168 ~~~I~V~~~g------------~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~  233 (268)
T 3nok_A          168 VGAVQVKLRG------------QPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNP  233 (268)
T ss_dssp             EEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCT
T ss_pred             EEEEEeCCCC------------cccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCc
Confidence            4444322111            124456777754  67999999999999999998876531   0            12


Q ss_pred             CCCcceEEEEecCcCeEEEEEccCCceEEEe
Q 011014          227 DTFHLGIFVLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       227 ~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      ...|.|||.|.. ...+|||..+=.++-.+-
T Consensus       234 ~~vlNGIA~dp~-~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          234 EAVLNGIAVEPG-SGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             TCCEEEEEECTT-TCCEEEEETTCSEEEEEE
T ss_pred             CCceEEEEEcCC-CCEEEEeCCCCCceEEEE
Confidence            236899999974 457899987766664443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.01  E-value=0.00033  Score=68.82  Aligned_cols=125  Identities=11%  Similarity=0.104  Sum_probs=80.0

Q ss_pred             ceEEEEcCCC-cEEEEECCCCeeEEEEcCCCCc--cccccCCC-cCccccCCcceEEEcC-CCCEEEEECCCCEEEEEcC
Q 011014           85 PFSVAVSPSG-ELLVLDSENNSRPKLVAGSPEG--YYGHVDGR-PRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        85 P~GIAVd~dG-~LyVaDs~n~~ii~ivaGs~~g--~~G~~dG~-~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~  159 (495)
                      ..|||+|+++ .||++.-.....+..+.|-..+  .....+.. .....+..+.+|++|+ .|++||....+++|..+|.
T Consensus       123 ~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~  202 (255)
T 3qqz_A          123 FEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL  202 (255)
T ss_dssp             CEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC
Confidence            4999999976 6999875544334444432111  00000000 0112456789999998 7889999999999999999


Q ss_pred             CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 011014          160 TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  218 (495)
Q Consensus       160 ~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g  218 (495)
                      +| +....--..|.     .  .....+..|.||+ +|.+|+|||+...| .+++|...+
T Consensus       203 ~g~~~~~~~L~~g~-----~--~l~~~~~qpEGia-~d~~G~lyIvsE~n-~~y~f~~~~  253 (255)
T 3qqz_A          203 VGEVIGEMSLTKGS-----R--GLSHNIKQAEGVA-MDASGNIYIVSEPN-RFYRFTPQS  253 (255)
T ss_dssp             TCCEEEEEECSTTG-----G--GCSSCCCSEEEEE-ECTTCCEEEEETTT-EEEEEEC--
T ss_pred             CCCEEEEEEcCCcc-----C--CcccccCCCCeeE-ECCCCCEEEEcCCc-eEEEEEecC
Confidence            99 32222211111     0  1123578999999 79999999998765 999998754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.85  E-value=0.00037  Score=66.78  Aligned_cols=158  Identities=15%  Similarity=0.088  Sum_probs=96.6

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccC-CCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcC
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVD-GRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD  159 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~d-G~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~  159 (495)
                      ..|.+++++++|+ ||+++..++ .+.++.-...+...... .......-..|.+++++++|+ ||+++..+++|.+++.
T Consensus       129 ~~~~~~~~s~dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~  207 (343)
T 1ri6_A          129 DGCHSANISPDNRTLWVPALKQD-RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  207 (343)
T ss_dssp             TTBCCCEECTTSSEEEEEEGGGT-EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             CCceEEEECCCCCEEEEecCCCC-EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            4689999999986 888885555 34443211101100000 000000114688999999998 9999988999999995


Q ss_pred             C---C-cE---EEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECC--CCce---eeCCC
Q 011014          160 T---G-VT---TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLH--DDDC---SDNYD  226 (495)
Q Consensus       160 ~---G-V~---tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~--g~~~---~~~~~  226 (495)
                      +   | +.   .+.....+           ......|.+++ ++++| .||+++..++.|.+++++  +...   .....
T Consensus       208 ~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~i~-~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~  275 (343)
T 1ri6_A          208 KDPHGNIECVQTLDMMPEN-----------FSDTRWAADIH-ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT  275 (343)
T ss_dssp             SCTTSCCEEEEEEECSCTT-----------CCSCCCEEEEE-ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred             cCCCCcEEEEeeccccCcc-----------ccccCCccceE-ECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence            3   3 22   22111100           11134567788 46655 789999999999999987  3222   12222


Q ss_pred             CCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          227 DTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       227 ~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      .+.|.+++++.. +..+|+++...+.|.
T Consensus       276 ~~~~~~~~~s~d-g~~l~~~~~~~~~v~  302 (343)
T 1ri6_A          276 ETQPRGFNVDHS-GKYLIAAGQKSHHIS  302 (343)
T ss_dssp             SSSCCCEEECTT-SSEEEEECTTTCEEE
T ss_pred             CCccceEEECCC-CCEEEEecCCCCeEE
Confidence            334899999862 456888887777884

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.84  E-value=0.00049  Score=68.66  Aligned_cols=166  Identities=16%  Similarity=0.044  Sum_probs=96.6

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEc-C-CCCcc-ccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEE
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVA-G-SPEGY-YGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKI  157 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~iva-G-s~~g~-~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~  157 (495)
                      ..|.++++++||+ ||++|..++ .+.++. . ++.-. ......   ...-..|.+++++++|+ |||++..++.|.++
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~-~v~~~~~~~~g~~~~~~~~~~---~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~  220 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTAN-KLWTHRKLASGEVELVGSVDA---PDPGDHPRWVAMHPTGNYLYALMEAGNRICEY  220 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTT-EEEEEEECTTSCEEEEEEEEC---SSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CcceEEEECCCCCEEEEEcCCCC-EEEEEEECCCCCEEEeeeEec---CCCCCCCCEeEECCCCCEEEEEECCCCeEEEE
Confidence            5799999999997 889998766 444432 1 11100 011000   00124699999999996 89999888888887


Q ss_pred             c--C-CC-cE----EEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCC-----eEEEEECC-CCcee
Q 011014          158 S--D-TG-VT----TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQ-----AIREIQLH-DDDCS  222 (495)
Q Consensus       158 d--~-~G-V~----tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~-----rI~~~d~~-g~~~~  222 (495)
                      +  . +| +.    ++.....+. .+. .++  ......|.++++++++| .||+++++.+     +|.+++.+ ...+.
T Consensus       221 ~~~~~~g~~~~~~~~~~~~~~~~-~g~-~~~--~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          221 VIDPATHMPVYTHHSFPLIPPGI-PDR-DPE--TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTC-CCB-CTT--TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             EEeCCCCcEEEccceEEcCCCCc-CCc-ccc--cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence            5  2 45 22    121111000 000 000  00112577887235555 6899998766     89998874 22232


Q ss_pred             e----C-CCCCCcceEEEEec--CcCeEEEEEccCCceEEE
Q 011014          223 D----N-YDDTFHLGIFVLVA--AAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       223 ~----~-~~~g~P~GIAvd~~--a~~~~yv~d~~~~Rv~~~  256 (495)
                      .    . .....|.++++...  .+..+|+++...++|...
T Consensus       297 ~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~  337 (365)
T 1jof_A          297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence            1    2 22335888888763  356789998877888433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.84  E-value=0.0023  Score=63.06  Aligned_cols=143  Identities=17%  Similarity=0.313  Sum_probs=93.0

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCCC
Q 011014           84 EPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG  161 (495)
Q Consensus        84 ~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~G  161 (495)
                      .+.+++++++|. ||++...++ .++++.............      -..+.+++++++|+ ||++....+.|+++|...
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~-~i~v~d~~~~~~~~~~~~------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~  105 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSN-DVSIIDTATNNVIATVPA------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGT-EEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CcceEEECCCCCEEEEECCCCC-eEEEEECCCCeEEEEEEC------CCCccceEECCCCCEEEEEECCCCEEEEEECCC
Confidence            588999999987 678876555 555554321011000010      12678999999988 889998889999999554


Q ss_pred             ---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEE
Q 011014          162 ---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVL  236 (495)
Q Consensus       162 ---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd  236 (495)
                         +.++..+                  ..+.+++ ..++| .||++...++.|+.+++....+.. ......|.++++.
T Consensus       106 ~~~~~~~~~~------------------~~~~~~~-~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  166 (391)
T 1l0q_A          106 NTVAGTVKTG------------------KSPLGLA-LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT  166 (391)
T ss_dssp             TEEEEEEECS------------------SSEEEEE-ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEEC
T ss_pred             CeEEEEEeCC------------------CCcceEE-ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEEC
Confidence               3333211                  1456777 45555 577999999999999988766543 2223456777776


Q ss_pred             ecCcCeEEEEEccCCce
Q 011014          237 VAAAFFGYMLALLQRRV  253 (495)
Q Consensus       237 ~~a~~~~yv~d~~~~Rv  253 (495)
                      . .+..+|++....+.|
T Consensus       167 ~-dg~~l~~~~~~~~~v  182 (391)
T 1l0q_A          167 P-DGTKVYVANFDSMSI  182 (391)
T ss_dssp             T-TSSEEEEEETTTTEE
T ss_pred             C-CCCEEEEEeCCCCEE
Confidence            4 234567777766666

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.83  E-value=0.00076  Score=65.00  Aligned_cols=140  Identities=14%  Similarity=0.249  Sum_probs=86.6

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeeEEEEcCC-CCc--cccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEE
Q 011014           82 GMEPFSVAVSPSGE-LLVLDSENNSRPKLVAGS-PEG--YYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRK  156 (495)
Q Consensus        82 ~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs-~~g--~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk  156 (495)
                      +..|.+++++++|+ |||++..++ .+.++.-. ..-  ......      .-..|.+++++++|+ |||++...+.|.+
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~-~v~v~d~~~~~~~~~~~~~~------~~~~~~~~~~spdg~~l~v~~~~~~~i~~  247 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGN-SIGILETQNPENITLLNAVG------TNNLPGTIVVSRDGSTVYVLTESTVDVFN  247 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTT-EEEEEECSSTTSCEEEEEEE------CSSCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEeCCCC-eEEEEECCCCcccceeeecc------CCCCCceEEECCCCCEEEEEEcCCCEEEE
Confidence            35799999999997 999998777 44444321 111  011101      125788999999999 9999988889999


Q ss_pred             EcCC-C-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCCCCcceEE
Q 011014          157 ISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIF  234 (495)
Q Consensus       157 ~d~~-G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~g~P~GIA  234 (495)
                      ++.. | +..+.....+.   ..+    ........++++.++...|||+...++.|.+++..+..+.........-+++
T Consensus       248 ~d~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~  320 (331)
T 3u4y_A          248 FNQLSGTLSFVKSFGHGL---LID----PRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIA  320 (331)
T ss_dssp             EETTTTEEEEEEEEECCC---CCC----CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEE
T ss_pred             EECCCCceeeeccccccc---ccC----CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeE
Confidence            9954 4 32222111000   000    0111222557743344468999999999999999988876644333334444


Q ss_pred             E
Q 011014          235 V  235 (495)
Q Consensus       235 v  235 (495)
                      +
T Consensus       321 ~  321 (331)
T 3u4y_A          321 I  321 (331)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.81  E-value=0.00049  Score=65.96  Aligned_cols=148  Identities=11%  Similarity=0.074  Sum_probs=95.4

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEc-C--CCC-ccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEE
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVA-G--SPE-GYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRK  156 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~iva-G--s~~-g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk  156 (495)
                      ..|.+|+++++|+ ||+++..+. .+.++. .  +.. ........      -..|.+|+++++|+ ||+++..++.|.+
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~i~~  110 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEF-RVLAYRIAPDDGALTFAAESAL------PGSLTHISTDHQGQFVFVGSYNAGNVSV  110 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTT-EEEEEEECTTTCCEEEEEEEEC------SSCCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCceEEECCCCCEEEEeecCCC-eEEEEEecCCCCceeecccccc------CCCCcEEEEcCCCCEEEEEecCCCeEEE
Confidence            3689999999998 888887655 444422 1  110 00110000      12789999999998 8899988889999


Q ss_pred             EcC-CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC-Ccee------e-C
Q 011014          157 ISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD-DDCS------D-N  224 (495)
Q Consensus       157 ~d~-~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g-~~~~------~-~  224 (495)
                      ++. +|  ...+....               ....|.+++ ++++| .||+++..++.|+.+++.. ..+.      . .
T Consensus       111 ~d~~~~~~~~~~~~~~---------------~~~~~~~~~-~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  174 (343)
T 1ri6_A          111 TRLEDGLPVGVVDVVE---------------GLDGCHSAN-ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT  174 (343)
T ss_dssp             EEEETTEEEEEEEEEC---------------CCTTBCCCE-ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             EECCCCcccccccccc---------------CCCCceEEE-ECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc
Confidence            885 33  11111000               112477788 45555 6999998889999999876 3331      1 2


Q ss_pred             CCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          225 YDDTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       225 ~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      .....|.+++++.. +..+|+++....+|.
T Consensus       175 ~~~~~~~~~~~~pd-g~~l~~~~~~~~~i~  203 (343)
T 1ri6_A          175 VEGAGPRHMVFHPN-EQYAYCVNELNSSVD  203 (343)
T ss_dssp             STTCCEEEEEECTT-SSEEEEEETTTTEEE
T ss_pred             CCCCCcceEEECCC-CCEEEEEeCCCCEEE
Confidence            22346888998863 446899988888884

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.81  E-value=0.0027  Score=62.40  Aligned_cols=159  Identities=13%  Similarity=0.107  Sum_probs=95.8

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccc------cCC--Cc-CccccCCcceEEEcCCCC-EEEEECCC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGH------VDG--RP-RGARMNHPKGLAVDDRGN-IYIADTMN  151 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~------~dG--~~-~~a~f~~P~GIAVD~dGn-IYVAD~~N  151 (495)
                      ...|..+++ ....||+++...+ .+.++.-...+....      ..+  .. ......+|.+++++++|+ |||++..+
T Consensus        99 ~~~p~~~~~-dg~~l~~~~~~~~-~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  176 (361)
T 3scy_A           99 GADPCYLTT-NGKNIVTANYSGG-SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT  176 (361)
T ss_dssp             SSCEEEEEE-CSSEEEEEETTTT-EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCCcEEEEE-CCCEEEEEECCCC-EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC
Confidence            357999999 3345899987766 344432111111100      011  10 112245678999999998 99999999


Q ss_pred             CEEEEEc--CCC-------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCce
Q 011014          152 MAIRKIS--DTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDC  221 (495)
Q Consensus       152 ~rIrk~d--~~G-------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~~  221 (495)
                      ++|++++  ..+       +... +....         .....-..|.+++ ++++| .|||++..++.|.+++.++..+
T Consensus       177 ~~v~v~~~~~~~~~~~~~~l~~~-~~~~~---------~~~~~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~~~~~g~~  245 (361)
T 3scy_A          177 DQIHKFNINPNANADNKEKFLTK-GTPEA---------FKVAPGSGPRHLI-FNSDGKFAYLINEIGGTVIAFRYADGML  245 (361)
T ss_dssp             TEEEEEEECTTCCTTTCCCCEEE-EEEEE---------EECCTTCCEEEEE-ECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred             CEEEEEEEcCCCCcccccceeec-ccccc---------eecCCCCCCeEEE-EcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence            9998886  222       2111 00000         0000123577888 56777 5999999899999999876543


Q ss_pred             ee-------CCCCCCcceEEEEecCcCeEEEEEcc-CCceE
Q 011014          222 SD-------NYDDTFHLGIFVLVAAAFFGYMLALL-QRRVQ  254 (495)
Q Consensus       222 ~~-------~~~~g~P~GIAvd~~a~~~~yv~d~~-~~Rv~  254 (495)
                      ..       ......|.+|++... +..+|+++.. .++|.
T Consensus       246 ~~~~~~~~~~~~~~~~~~i~~spd-g~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          246 DEIQTVAADTVNAQGSGDIHLSPD-GKYLYASNRLKADGVA  285 (361)
T ss_dssp             EEEEEEESCSSCCCCEEEEEECTT-SSEEEEEECSSSCEEE
T ss_pred             EEeEEEecCCCCCCCcccEEECCC-CCEEEEECCCCCCEEE
Confidence            21       111234778998863 4578999988 77774

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.61  E-value=0.0072  Score=59.51  Aligned_cols=143  Identities=20%  Similarity=0.283  Sum_probs=94.4

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCC-
Q 011014           84 EPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-  160 (495)
Q Consensus        84 ~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~-  160 (495)
                      .+.+++++++|+ ||++..... .+.++.-..........      .-..+.+++++++|+ |||+...++.|+++|.. 
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~-~v~v~d~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASS-TLSVIDTTSNTVAGTVK------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTT-EEEEEETTTTEEEEEEE------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEECCCC-EEEEEECCCCeEEEEEe------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            789999999887 778887655 45554322101111000      112578999999998 77999999999999954 


Q ss_pred             C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEE
Q 011014          161 G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVL  236 (495)
Q Consensus       161 G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd  236 (495)
                      +  +.++..+                  ..|.++++ ..++ .||++...++.|+.+++....+.. ......+.++++.
T Consensus       148 ~~~~~~~~~~------------------~~~~~~~~-~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  208 (391)
T 1l0q_A          148 KAVINTVSVG------------------RSPKGIAV-TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVN  208 (391)
T ss_dssp             TEEEEEEECC------------------SSEEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEEC
T ss_pred             CcEEEEEecC------------------CCcceEEE-CCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEEC
Confidence            4  3333221                  13567774 5555 678999999999999998876543 2334457888887


Q ss_pred             ecCcCeEEEEEc--cCCce
Q 011014          237 VAAAFFGYMLAL--LQRRV  253 (495)
Q Consensus       237 ~~a~~~~yv~d~--~~~Rv  253 (495)
                      . .+..+|++..  .+..|
T Consensus       209 ~-~g~~l~~~~~~~~~~~v  226 (391)
T 1l0q_A          209 P-EGTKAYVTNVDKYFNTV  226 (391)
T ss_dssp             T-TSSEEEEEEECSSCCEE
T ss_pred             C-CCCEEEEEecCcCCCcE
Confidence            5 2446777775  56666

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.61  E-value=0.0064  Score=65.08  Aligned_cols=160  Identities=11%  Similarity=0.032  Sum_probs=101.5

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeeEEEEcC---CCCccccccCCCcCccccCCcceEEEcC----CCC-EEEEECCCCEE
Q 011014           84 EPFSVAVSPSGE-LLVLDSENNSRPKLVAG---SPEGYYGHVDGRPRGARMNHPKGLAVDD----RGN-IYIADTMNMAI  154 (495)
Q Consensus        84 ~P~GIAVd~dG~-LyVaDs~n~~ii~ivaG---s~~g~~G~~dG~~~~a~f~~P~GIAVD~----dGn-IYVAD~~N~rI  154 (495)
                      .|+++++++||. ||+++.+ + .+.++.-   +. .......      .-..|.+|++++    +|+ |||+....+.|
T Consensus       180 ~~~~v~~spdg~~l~v~~~d-~-~V~v~D~~~~t~-~~~~~i~------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v  250 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRD-A-RIDMIDLWAKEP-TKVAEIK------IGIEARSVESSKFKGYEDRYTIAGAYWPPQF  250 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETT-S-EEEEEETTSSSC-EEEEEEE------CCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             ccceEEECCCCCEEEEECCC-C-eEEEEECcCCCC-cEEEEEe------cCCCcceEEeCCCcCCCCCEEEEEEccCCeE
Confidence            489999999986 8888876 4 4555543   21 1111101      113589999999    887 89999888999


Q ss_pred             EEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce-e--eCCCCC
Q 011014          155 RKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC-S--DNYDDT  228 (495)
Q Consensus       155 rk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~-~--~~~~~g  228 (495)
                      .++|...   +.++......     .++. .-..-..+.+|++....+.+||+....+.|..++.....+ .  ......
T Consensus       251 ~v~D~~t~~~~~~i~~~g~~-----~~~~-~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~  324 (543)
T 1nir_A          251 AIMDGETLEPKQIVSTRGMT-----VDTQ-TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP  324 (543)
T ss_dssp             EEEETTTCCEEEEEECCEEC-----SSSC-CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCS
T ss_pred             EEEeccccccceeecccCcc-----cCcc-ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCc
Confidence            9999443   4555331110     0000 0000124567775444678899999999999999876432 1  223345


Q ss_pred             CcceEEEEecCcCeEEEEEccCCceEEEeeCC
Q 011014          229 FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       229 ~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                      +|.+++++. .+..+|+++...+.|. ++...
T Consensus       325 ~~~~~~~sp-dg~~l~va~~~~~~v~-v~D~~  354 (543)
T 1nir_A          325 FLHDGGWDS-SHRYFMTAANNSNKVA-VIDSK  354 (543)
T ss_dssp             SCCCEEECT-TSCEEEEEEGGGTEEE-EEETT
T ss_pred             CccCceECC-CCCEEEEEecCCCeEE-EEECC
Confidence            799999986 3456788888888884 34333

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.57  E-value=0.00058  Score=74.34  Aligned_cols=63  Identities=22%  Similarity=0.277  Sum_probs=48.6

Q ss_pred             cccCCcceEEEcCCCCEEE-EEC-----------CCCEEEEEcC-CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEE
Q 011014          128 ARMNHPKGLAVDDRGNIYI-ADT-----------MNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV  193 (495)
Q Consensus       128 a~f~~P~GIAVD~dGnIYV-AD~-----------~N~rIrk~d~-~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa  193 (495)
                      ..|+.|.+|++|++|+||| +|.           .|+.|.++++ .| +..++.+.               .+..|+|++
T Consensus       473 ~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P---------------~~aEpnGia  537 (592)
T 4a9v_A          473 NMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP---------------IGCEVTGIS  537 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC---------------TTCEEEEEE
T ss_pred             CccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC---------------CCccccCCE
Confidence            4799999999999999999 886           3678999997 45 66665322               234789999


Q ss_pred             EECCCCeEEEEE
Q 011014          194 YVGSSCSLLVID  205 (495)
Q Consensus       194 ~vd~~G~LyVaD  205 (495)
                      +.++...|||+-
T Consensus       538 fSPD~ktLfV~v  549 (592)
T 4a9v_A          538 FSPDQKTLFVGI  549 (592)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            766666788875

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.56  E-value=0.0014  Score=69.52  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=94.0

Q ss_pred             CceEEEeecCCCCCCCceEEEEcCCCc--EEEEECCCCeeEEEEcCCCCc---cccccCCCcCc----cccCCcceEEEc
Q 011014           69 GYTVETVFEGSKFGMEPFSVAVSPSGE--LLVLDSENNSRPKLVAGSPEG---YYGHVDGRPRG----ARMNHPKGLAVD  139 (495)
Q Consensus        69 G~~~~~~~~G~~~~~~P~GIAVd~dG~--LyVaDs~n~~ii~ivaGs~~g---~~G~~dG~~~~----a~f~~P~GIAVD  139 (495)
                      |+.++....+   +..|++|++.+||.  |||++...  .++++......   ...........    .....+.|||++
T Consensus         3 gf~v~~va~g---L~~P~~~a~~pdG~~rl~V~er~G--~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~   77 (463)
T 2wg3_C            3 CFCIQEVVSG---LRQPVGALHSGDGSQRLFILEKEG--YVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFH   77 (463)
T ss_dssp             CEEEEEEEEE---ESSEEEEECCSSSSCCEEEEETTT--EEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEEC
T ss_pred             ceEEEEeccC---CCCceEEEECCCCCeEEEEEeCCc--eEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeC
Confidence            4444444433   45899999999985  99999753  56666422111   00000000000    113456799999


Q ss_pred             CC----CCEEEEECCC------------CEEEEEcCC-----C-----cEEEecCcccCCCCCCCCCCcCcccCCCceEE
Q 011014          140 DR----GNIYIADTMN------------MAIRKISDT-----G-----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV  193 (495)
Q Consensus       140 ~d----GnIYVAD~~N------------~rIrk~d~~-----G-----V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa  193 (495)
                      ++    |.|||+-+..            ++|.++..+     .     ..+|......            ..-.....|+
T Consensus        78 P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~------------~~~H~g~~l~  145 (463)
T 2wg3_C           78 PNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL------------HRKHLGGQLL  145 (463)
T ss_dssp             TTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES------------SSSSCEEEEE
T ss_pred             CCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC------------CCcccCCcEe
Confidence            85    8899986421            478777621     1     1233221100            1123445566


Q ss_pred             EECCCCeEEEE--ECC---------------CCeEEEEECCCCc------e---------------eeCCCCCCcceEEE
Q 011014          194 YVGSSCSLLVI--DRG---------------NQAIREIQLHDDD------C---------------SDNYDDTFHLGIFV  235 (495)
Q Consensus       194 ~vd~~G~LyVa--D~g---------------N~rI~~~d~~g~~------~---------------~~~~~~g~P~GIAv  235 (495)
                       ++++|.|||+  |.+               ..+|.+|+++|..      +               .+..+.-.|.|+++
T Consensus       146 -fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~  224 (463)
T 2wg3_C          146 -FGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAV  224 (463)
T ss_dssp             -ECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEE
T ss_pred             -ECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEE
Confidence             7999999998  433               3579999999941      1               12334445999999


Q ss_pred             EecCc---C--eEEEEEc
Q 011014          236 LVAAA---F--FGYMLAL  248 (495)
Q Consensus       236 d~~a~---~--~~yv~d~  248 (495)
                      |...+   +  .+|++|.
T Consensus       225 dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          225 DRHPTDININLTILCSDS  242 (463)
T ss_dssp             ESSCSSTTCSEEEEEECC
T ss_pred             CCCCCCcccceEEEeccc
Confidence            98533   3  6777775

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.55  E-value=0.00041  Score=73.22  Aligned_cols=111  Identities=12%  Similarity=0.057  Sum_probs=74.5

Q ss_pred             ccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECC----CCeEE
Q 011014          129 RMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS----SCSLL  202 (495)
Q Consensus       129 ~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~----~G~Ly  202 (495)
                      .|..|++|+++++|+|||++....+|++++. +| ..++.......        ....-...+.+|+ +++    ++.||
T Consensus        25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~--------~~~~g~~Gllgia-~~Pdf~~~g~lY   95 (454)
T 1cru_A           25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV--------NDADGQNGLLGFA-FHPDFKNNPYIY   95 (454)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC--------CCTTSSCSEEEEE-ECTTTTTSCEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccc--------cccCCCCceeEEE-ECCCcCcCCEEE
Confidence            4789999999999999999998789999985 46 44443321110        0000123567899 455    89999


Q ss_pred             EEECC------------CCeEEEEECCCCc--e------ee--C-CCCCCcceEEEEecCcCeEEEEEccC
Q 011014          203 VIDRG------------NQAIREIQLHDDD--C------SD--N-YDDTFHLGIFVLVAAAFFGYMLALLQ  250 (495)
Q Consensus       203 VaD~g------------N~rI~~~d~~g~~--~------~~--~-~~~g~P~GIAvd~~a~~~~yv~d~~~  250 (495)
                      |++..            ..+|.+++.+...  +      ..  . .....+.+|+++.  .+.|||+....
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p--DG~Lyv~~Gd~  164 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP--DQKIYYTIGDQ  164 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT--TSCEEEEECCT
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC--CCeEEEEECCC
Confidence            99964            4689999875421  1      11  1 1223588899986  66899986554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.52  E-value=0.01  Score=60.52  Aligned_cols=62  Identities=15%  Similarity=0.007  Sum_probs=42.5

Q ss_pred             EEEECCCCeEEEEEC---------CCCeEEEEECCCCce-eeCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          192 VVYVGSSCSLLVIDR---------GNQAIREIQLHDDDC-SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       192 Va~vd~~G~LyVaD~---------gN~rI~~~d~~g~~~-~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      +++..+.+.|||+..         .++.|.+||+.+..+ .+....+.|.+|++...+...+|++....+.|
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V  343 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence            553334467888754         246899999987665 34444456999999874433688887777788

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.45  E-value=0.0032  Score=62.67  Aligned_cols=107  Identities=10%  Similarity=0.089  Sum_probs=70.7

Q ss_pred             CCcceEEEcCCCC-EEEEECCCCEEEEEcC--CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEE
Q 011014          131 NHPKGLAVDDRGN-IYIADTMNMAIRKISD--TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVID  205 (495)
Q Consensus       131 ~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~--~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD  205 (495)
                      ..|.+++++++|+ |||+|.++++|++++.  +| +..+.... .  .         ..-..|.+++ ++++| .|||++
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~--~---------~~g~~p~~~~-~spdg~~l~v~~  211 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-A--P---------DPGDHPRWVA-MHPTGNYLYALM  211 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-C--S---------STTCCEEEEE-ECTTSSEEEEEE
T ss_pred             CcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-c--C---------CCCCCCCEeE-ECCCCCEEEEEE
Confidence            5789999999997 9999998999999984  45 32221100 0  0         0013588888 56666 789999


Q ss_pred             CCCCeEEEEECC---CCce------eeCCC--CC---------CcceEE-EEecCcCeEEEEEccCC
Q 011014          206 RGNQAIREIQLH---DDDC------SDNYD--DT---------FHLGIF-VLVAAAFFGYMLALLQR  251 (495)
Q Consensus       206 ~gN~rI~~~d~~---g~~~------~~~~~--~g---------~P~GIA-vd~~a~~~~yv~d~~~~  251 (495)
                      ..++.|.+++.+   |...      .....  .+         .|.+++ +.. .+..+|+++...+
T Consensus       212 ~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~  277 (365)
T 1jof_A          212 EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANK  277 (365)
T ss_dssp             TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESS
T ss_pred             CCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCC
Confidence            888899888764   3321      11111  11         478888 765 3457899887665

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.43  E-value=0.0053  Score=60.80  Aligned_cols=137  Identities=12%  Similarity=0.033  Sum_probs=89.4

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEc-CC--CCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVA-GS--PEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~iva-Gs--~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      -.||.++ ++.||++...... ++.++ .+  .....  .+.     . ....||+++. +.||+++..+++|.+||.+.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~-v~~iD~~Tgkv~~~~--l~~-----~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T  125 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGT-LRQLSLESAQPVWME--RLG-----N-IFAEGLASDG-ERLYQLTWTEGLLFTWSGMP  125 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTE-EEECCSSCSSCSEEE--ECT-----T-CCEEEEEECS-SCEEEEESSSCEEEEEETTT
T ss_pred             cceEEEE-CCEEEEEcCCCCE-EEEEECCCCcEEeEE--CCC-----C-cceeEEEEeC-CEEEEEEccCCEEEEEECCc
Confidence            4799998 5899999988775 44443 12  11111  011     0 1225788874 58999999999999999665


Q ss_pred             ---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee---CCCCC----Ccc
Q 011014          162 ---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD---NYDDT----FHL  231 (495)
Q Consensus       162 ---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~---~~~~g----~P~  231 (495)
                         +.+|.-.                  ..+.+++.  ..+.||++| +.++|+.||+.+.....   ....+    ++.
T Consensus       126 l~~~~ti~~~------------------~eGwGLt~--Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN  184 (268)
T 3nok_A          126 PQRERTTRYS------------------GEGWGLCY--WNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELIN  184 (268)
T ss_dssp             TEEEEEEECS------------------SCCCCEEE--ETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CcEEEEEeCC------------------CceeEEec--CCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence               4555321                  13467773  346999999 68999999998855432   12223    345


Q ss_pred             eEEEEecCcCeEEEEEccCCceEEE
Q 011014          232 GIFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       232 GIAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                      .+...   .+.+|+..+..+.|..+
T Consensus       185 eLe~~---dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          185 ELECA---NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EEEEE---TTEEEEEETTCSEEEEE
T ss_pred             ccEEe---CCEEEEEECCCCeEEEE
Confidence            55555   45799999888888433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.40  E-value=0.0082  Score=58.59  Aligned_cols=142  Identities=11%  Similarity=-0.035  Sum_probs=87.7

Q ss_pred             CceEEEEcCCCcEEEEECC--CCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           84 EPFSVAVSPSGELLVLDSE--NNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~--n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      .-.|++++. +.||++...  .+.+..+-..++. ......-.    .-....||+++ .+.||+++..+++|.++|.+.
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk-v~~~~~l~----~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR-ILQRAEVP----PPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC-EEEEEECC----TTCCEEEEEEE-TTEEEEEESSSSEEEEEETTT
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCC-EEEEEeCC----CCcceeEEEEe-CCEEEEEEeeCCEEEEEECCc
Confidence            467999985 899999754  3433333222221 01100000    00123577887 468999999999999999765


Q ss_pred             ---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee---CCCCCCc----c
Q 011014          162 ---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD---NYDDTFH----L  231 (495)
Q Consensus       162 ---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~---~~~~g~P----~  231 (495)
                         +.++.-+                  ..+.+++  ...+.||++| +.++|..+|+.+.....   ....+.|    .
T Consensus        95 l~~~~ti~~~------------------~~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN  153 (243)
T 3mbr_X           95 LTPRARFRYP------------------GEGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN  153 (243)
T ss_dssp             TEEEEEEECS------------------SCCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CcEEEEEeCC------------------CCceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence               4555321                  1356776  3457999999 58999999998855431   2223333    3


Q ss_pred             eEEEEecCcCeEEEEEccCCceEEE
Q 011014          232 GIFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       232 GIAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                      .+...   .+.+|+..+..+.|..+
T Consensus       154 eLe~~---~G~lyanvw~s~~I~vI  175 (243)
T 3mbr_X          154 ELEWV---NGELLANVWLTSRIARI  175 (243)
T ss_dssp             EEEEE---TTEEEEEETTTTEEEEE
T ss_pred             eeEEe---CCEEEEEECCCCeEEEE
Confidence            44444   45799998888888443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.34  E-value=0.012  Score=61.79  Aligned_cols=78  Identities=9%  Similarity=-0.009  Sum_probs=49.8

Q ss_pred             CCceEEEEcCCCc-EEEEECC--------CCeeEEEEcCCCCcccccc--CCCcCccccCCcceEEEcCCCC-EEEEECC
Q 011014           83 MEPFSVAVSPSGE-LLVLDSE--------NNSRPKLVAGSPEGYYGHV--DGRPRGARMNHPKGLAVDDRGN-IYIADTM  150 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~--------n~~ii~ivaGs~~g~~G~~--dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~  150 (495)
                      ..| +|++++||. |||+++.        ....+.+++.......+..  .+.........|.++++++||+ |||++..
T Consensus       119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~  197 (426)
T 3c75_H          119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS  197 (426)
T ss_dssp             SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS
T ss_pred             CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC
Confidence            479 999999987 9999863        1224556543221111111  1100000125799999999996 9999875


Q ss_pred             -CCEEEEEcCCC
Q 011014          151 -NMAIRKISDTG  161 (495)
Q Consensus       151 -N~rIrk~d~~G  161 (495)
                       .+.|.+||...
T Consensus       198 ~~~~VsVID~~t  209 (426)
T 3c75_H          198 PAPAVGVVDLEG  209 (426)
T ss_dssp             SSCEEEEEETTT
T ss_pred             CCCeEEEEECCC
Confidence             78999999554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.34  E-value=0.0024  Score=61.37  Aligned_cols=143  Identities=8%  Similarity=-0.068  Sum_probs=82.4

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCC-C-
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-G-  161 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~-G-  161 (495)
                      ++|+++.+++.+||+...++ .+.++.............    .....|.+++++++|+ +||++..++.|.+++.. + 
T Consensus         2 ~~g~~~~~~~~~~v~~~~~~-~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~   76 (349)
T 1jmx_B            2 DTGPALKAGHEYMIVTNYPN-NLHVVDVASDTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK   76 (349)
T ss_dssp             --CCCCCTTCEEEEEEETTT-EEEEEETTTTEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CccccccCCCEEEEEeCCCC-eEEEEECCCCcEEEEEec----CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence            34667777788888877666 444443221011000000    0112588999999997 89999999999999954 4 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECC-----------CCeEEEEECCCCce----eeC
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRG-----------NQAIREIQLHDDDC----SDN  224 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~g-----------N~rI~~~d~~g~~~----~~~  224 (495)
                       +.++.....   .        ...-..|.+++ ++++| .||+++..           ++.|.++++.+...    ...
T Consensus        77 ~~~~~~~~~~---~--------~~~~~~~~~~~-~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  144 (349)
T 1jmx_B           77 NTFHANLSSV---P--------GEVGRSMYSFA-ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF  144 (349)
T ss_dssp             EEEEEESCCS---T--------TEEEECSSCEE-ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred             EEEEEEcccc---c--------ccccccccceE-ECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence             333321100   0        00123578888 45555 68888854           57999999876322    122


Q ss_pred             CCCCCcceEEEEecCcCeEEEE
Q 011014          225 YDDTFHLGIFVLVAAAFFGYML  246 (495)
Q Consensus       225 ~~~g~P~GIAvd~~a~~~~yv~  246 (495)
                      .....+.++++...  +.+|++
T Consensus       145 ~~~~~~~~~~~s~d--g~l~~~  164 (349)
T 1jmx_B          145 PMPRQVYLMRAADD--GSLYVA  164 (349)
T ss_dssp             ECCSSCCCEEECTT--SCEEEE
T ss_pred             cCCCcccceeECCC--CcEEEc
Confidence            22334667777652  236764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.26  E-value=0.0038  Score=62.49  Aligned_cols=148  Identities=8%  Similarity=0.003  Sum_probs=94.2

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCC-CCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGS-PEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs-~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      ..|.++++++++.++++....+ .+.++.-. ..-. ................+++++++|++|++....+.|++++.+.
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~-~i~~~d~~~g~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDE-GMDVLDINSGQTV-RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSS-SEEEEETTTCCEE-EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCC-eEEEEECCCCeEe-eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence            4578899999888999887665 34444321 1100 0000000001223456799999999999999999999999543


Q ss_pred             ---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEEe
Q 011014          162 ---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVLV  237 (495)
Q Consensus       162 ---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~  237 (495)
                         +.++.+.                 -..+.++++.+....||+++...+.|+.+++....+.. ....+.+.+++++.
T Consensus       201 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  263 (433)
T 3bws_A          201 LAYKATVDLT-----------------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK  263 (433)
T ss_dssp             CCEEEEEECS-----------------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT
T ss_pred             ceEEEEEcCC-----------------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC
Confidence               3444211                 12567788655555788999888999999987765543 33444588888875


Q ss_pred             cCcCeEEEEEccC
Q 011014          238 AAAFFGYMLALLQ  250 (495)
Q Consensus       238 ~a~~~~yv~d~~~  250 (495)
                      . +..++++....
T Consensus       264 ~-g~~l~~~~~~~  275 (433)
T 3bws_A          264 D-GKELYIAQFSA  275 (433)
T ss_dssp             T-SSEEEEEEEES
T ss_pred             C-CCEEEEEECCC
Confidence            2 34667776543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.26  E-value=0.017  Score=62.56  Aligned_cols=156  Identities=8%  Similarity=0.004  Sum_probs=92.8

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEcC---CCCccccccCCCcCccccCCcceEEEc----CCCC-EEEEECCCCE
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAG---SPEGYYGHVDGRPRGARMNHPKGLAVD----DRGN-IYIADTMNMA  153 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaG---s~~g~~G~~dG~~~~a~f~~P~GIAVD----~dGn-IYVAD~~N~r  153 (495)
                      ..|+++++++||. |||++..+  .+.++.-   +.. ......      .=..|.+|+++    ++|+ +||++...+.
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg--~V~viD~~~~t~~-~v~~i~------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~  267 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDG--KVNMIDLWMKEPT-TVAEIK------IGSEARSIETSKMEGWEDKYAIAGAYWPPQ  267 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTS--EEEEEETTSSSCC-EEEEEE------CCSEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred             CCccceEECCCCCEEEEEcCCC--eEEEEECCCCCCc-EeEEEe------cCCCCceeEEccccCCCCCEEEEEEccCCe
Confidence            4799999999987 78887533  3445432   221 111100      01358999999    5885 9999999999


Q ss_pred             EEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc---eeeCCCC
Q 011014          154 IRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD---CSDNYDD  227 (495)
Q Consensus       154 Irk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~---~~~~~~~  227 (495)
                      |.+||...   +.++.-+...     .++. .-.-.....+|+.......++|+....+.|..++.....   +......
T Consensus       268 v~ViD~~t~~~~~~i~~~~~~-----~~~~-~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~  341 (567)
T 1qks_A          268 YVIMDGETLEPKKIQSTRGMT-----YDEQ-EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE  341 (567)
T ss_dssp             EEEEETTTCCEEEEEECCEEC-----TTTC-CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEeccccc-----cccc-cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc
Confidence            99999544   4445321110     0000 000001223454333334566666777888888766532   1122233


Q ss_pred             CCcceEEEEecCcCeEEEEEccCCceE
Q 011014          228 TFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       228 g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      .+|.+++++. .+..+|+++...++|.
T Consensus       342 ~~~~d~~~~p-dgr~~~va~~~sn~V~  367 (567)
T 1qks_A          342 RFLHDGGLDG-SHRYFITAANARNKLV  367 (567)
T ss_dssp             SSEEEEEECT-TSCEEEEEEGGGTEEE
T ss_pred             ccccCceECC-CCCEEEEEeCCCCeEE
Confidence            4788898886 4567899998888984

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.25  E-value=0.0085  Score=57.00  Aligned_cols=115  Identities=12%  Similarity=0.120  Sum_probs=70.4

Q ss_pred             CceEEEEcCCC-cEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcCCC-CEEEEEC-----------
Q 011014           84 EPFSVAVSPSG-ELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIADT-----------  149 (495)
Q Consensus        84 ~P~GIAVd~dG-~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dG-nIYVAD~-----------  149 (495)
                      .|.+++++++| .||+++...+ .+.++. .+..- ............-..|.+++++++| .||+++.           
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~-~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSE-SLVKIDLVTGET-LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTT-EEEEEETTTCCE-EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCC-eEEEEECCCCCe-EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence            48899999998 4889988766 444443 22110 0000000000011268899999999 4999962           


Q ss_pred             CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCCCcee
Q 011014          150 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       150 ~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                      .++.|.+++...   +..+..+                  ..|.+++ ++++|. ||++   ++.|..+++.+..+.
T Consensus       113 ~~~~i~v~d~~~~~~~~~~~~~------------------~~~~~~~-~s~dg~~l~~~---~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          113 QPTRVALYDAETLSRRKAFEAP------------------RQITMLA-WARDGSKLYGL---GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEECC------------------SSCCCEE-ECTTSSCEEEE---SSSEEEEETTTTEEE
T ss_pred             cCceEEEEECCCCcEEEEEeCC------------------CCcceeE-ECCCCCEEEEe---CCeEEEEECCCCcEe
Confidence            358999999654   2333211                  1367777 455555 8888   467999998876554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.13  E-value=0.019  Score=62.71  Aligned_cols=196  Identities=9%  Similarity=-0.062  Sum_probs=113.4

Q ss_pred             eeeeeeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEc--CCC-cEEEEECC---------
Q 011014           35 IVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVS--PSG-ELLVLDSE---------  102 (495)
Q Consensus        35 ~~~~ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd--~dG-~LyVaDs~---------  102 (495)
                      -..-+....+.+|.++|..+..+.               ..+ ....+..|+|+++.  |++ .||++...         
T Consensus       102 ~~lfVnd~~~~rVavIdl~t~~~~---------------~ii-~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~  165 (595)
T 1fwx_A          102 RFLFMNDKANTRVARVRCDVMKCD---------------AIL-EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT  165 (595)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEE---------------EEE-ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred             CEEEEEcCCCCEEEEEECCCceEe---------------eEE-eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence            333445555666777777665433               000 01123469999984  655 48888521         


Q ss_pred             -------CCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCC--------------CEEEEEcC-
Q 011014          103 -------NNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMN--------------MAIRKISD-  159 (495)
Q Consensus       103 -------n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N--------------~rIrk~d~-  159 (495)
                             ....+.+++.........    ..-.  .+|.+++++++|. +||+....              ..|.+++. 
T Consensus       166 ~l~~~~~~~~~vtvID~~t~~v~~q----I~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~  239 (595)
T 1fwx_A          166 NMEDVANYVNVFTAVDADKWEVAWQ----VLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA  239 (595)
T ss_dssp             STTCGGGEEEEEEEEETTTTEEEEE----EEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred             ccccccccCceEEEEECCCCeEEEE----EEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence                   012444444332000000    0000  2699999999887 88888765              34666661 


Q ss_pred             -------CC-------cEEEecCcc-cCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc---
Q 011014          160 -------TG-------VTTIAGGKW-SRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD---  220 (495)
Q Consensus       160 -------~G-------V~tiaGg~~-G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~---  220 (495)
                             +|       |+.|-+... +.    . -......=..|+||.+ .+|| .+||++...++|.+|+.+...   
T Consensus       240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~----~-~~~~Ipvg~~PhGv~~-sPDGk~v~V~~~~s~~VsVid~~~~~~~~  313 (595)
T 1fwx_A          240 EIEKAIAAGDYQELNGVKVVDGRKEASS----L-FTRYIPIANNPHGCNM-APDKKHLCVAGKLSPTVTVLDVTRFDAVF  313 (595)
T ss_dssp             HHHHHHHHTCSEEETTEEEEECSGGGCC----S-SEEEEEEESSCCCEEE-CTTSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred             ceeEeccCCCeeEECcEEEEeCcccCCc----e-eEEEEecCCCceEEEE-cCCCCEEEEeCCCCCeEEEEECccccccc
Confidence                   22       333322110 00    0 0000111158999994 5555 699999999999999998542   


Q ss_pred             ---------eeeCCCCC-CcceEEEEecCcCeEEEEEccCCceEEEeeCC
Q 011014          221 ---------CSDNYDDT-FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       221 ---------~~~~~~~g-~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                               +......| .|..++++.  .+++|++..+.+-|.++...+
T Consensus       314 ~~~l~~~~~v~~~v~vG~gP~h~aF~~--dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          314 YENADPRSAVVAEPELGLGPLHTAFDG--RGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             HSCCCGGGGEEECCBCCSCEEEEEECT--TSEEEEEETTTTEEEEEEHHH
T ss_pred             ccccCcccceEEEcCCCCCcceEEECC--CCeEEEEEecCCcEEEEEhhH
Confidence                     22333444 499999997  338999999999997765443

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.13  E-value=0.0033  Score=68.52  Aligned_cols=120  Identities=15%  Similarity=0.099  Sum_probs=77.9

Q ss_pred             ccccCCcceEEEcC-CCCEEEEECCC---------------------CEEEEEcCCC-----------cEEEecCcccCC
Q 011014          127 GARMNHPKGLAVDD-RGNIYIADTMN---------------------MAIRKISDTG-----------VTTIAGGKWSRG  173 (495)
Q Consensus       127 ~a~f~~P~GIAVD~-dGnIYVAD~~N---------------------~rIrk~d~~G-----------V~tiaGg~~G~~  173 (495)
                      ...|.+|.+|++++ +|.||||=++|                     ++|.++..++           +..++|......
T Consensus       380 AT~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~  459 (592)
T 4a9v_A          380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA  459 (592)
T ss_dssp             CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred             CccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccc
Confidence            45788999999998 89999996543                     6788887422           222322211100


Q ss_pred             CC---CCCCCCcCcccCCCceEEEECCCCeEEE-EEC-----------CCCeEEEEECCCCcee-eCCC--CCCcceEEE
Q 011014          174 VG---HVDGPSEDAKFSNDFDVVYVGSSCSLLV-IDR-----------GNQAIREIQLHDDDCS-DNYD--DTFHLGIFV  235 (495)
Q Consensus       174 ~g---~~dG~~~~a~f~~P~gVa~vd~~G~LyV-aD~-----------gN~rI~~~d~~g~~~~-~~~~--~g~P~GIAv  235 (495)
                      .+   ...+......|+.|.+|+ ++++|+||| +|.           +|+.|.+++++...+. ....  ...|.||++
T Consensus       460 ~~~~~g~~~~~~~~~fnsPDnL~-fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiaf  538 (592)
T 4a9v_A          460 GTPKGGSSNITPQNMFNSPDGLG-FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISF  538 (592)
T ss_dssp             TSGGGCCTTCCTTTCCCCEEEEE-ECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEE
T ss_pred             cccccCccCccccCccCCCCceE-ECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEE
Confidence            00   001122334799999999 799999999 786           3678999998655443 2222  235899999


Q ss_pred             EecCcCeEEEEEc
Q 011014          236 LVAAAFFGYMLAL  248 (495)
Q Consensus       236 d~~a~~~~yv~d~  248 (495)
                      .. .+..+||+-.
T Consensus       539 SP-D~ktLfV~vQ  550 (592)
T 4a9v_A          539 SP-DQKTLFVGIQ  550 (592)
T ss_dssp             CT-TSSEEEEEEE
T ss_pred             CC-CCCEEEEEEe
Confidence            86 3457787754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.10  E-value=0.043  Score=58.61  Aligned_cols=156  Identities=12%  Similarity=0.011  Sum_probs=95.0

Q ss_pred             CCCceEEEEcC----CCc-EEEEECCCCeeEEEEcCCCCcccccc--CCC-cCcc---ccCCcceEEEcCCC-CEEEEEC
Q 011014           82 GMEPFSVAVSP----SGE-LLVLDSENNSRPKLVAGSPEGYYGHV--DGR-PRGA---RMNHPKGLAVDDRG-NIYIADT  149 (495)
Q Consensus        82 ~~~P~GIAVd~----dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~--dG~-~~~a---~f~~P~GIAVD~dG-nIYVAD~  149 (495)
                      +..|.+|++++    ||. |||++...+ .+.++.+.........  .+. ....   .-..+.+|++++++ .+||+..
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~-~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPP-QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESS-EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCC-eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            45799999999    887 788876555 3455543210000000  000 0000   01256789999865 5888998


Q ss_pred             CCCEEEEEcCCC---c--EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCCCceee
Q 011014          150 MNMAIRKISDTG---V--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDDDCSD  223 (495)
Q Consensus       150 ~N~rIrk~d~~G---V--~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-LyVaD~gN~rI~~~d~~g~~~~~  223 (495)
                      ..++|.+++...   +  .++..   +               ..|.+++ ++++|. ||++....+.|.++|+....+..
T Consensus       300 ~~g~i~vvd~~~~~~l~~~~i~~---~---------------~~~~~~~-~spdg~~l~va~~~~~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLTVTSIGA---A---------------PFLHDGG-WDSSHRYFMTAANNSNKVAVIDSKDRRLSA  360 (543)
T ss_dssp             TTTEEEEEECTTSSSCEEEEEEC---C---------------SSCCCEE-ECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CCCeEEEEEecCCCcceeEEecc---C---------------cCccCce-ECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence            999999999432   2  24411   1               2578888 577775 88999888999999998877653


Q ss_pred             C-CCCCCc---ceEEEEecCcCeEEEEEcc-CCceEEEee
Q 011014          224 N-YDDTFH---LGIFVLVAAAFFGYMLALL-QRRVQAMFS  258 (495)
Q Consensus       224 ~-~~~g~P---~GIAvd~~a~~~~yv~d~~-~~Rv~~~~~  258 (495)
                      . .....|   .|+.+.....+.+|++..+ .+.| +++.
T Consensus       361 ~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V-~v~d  399 (543)
T 1nir_A          361 LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI-SLIG  399 (543)
T ss_dssp             EEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE-EEEE
T ss_pred             eeccCCCCCCCCCcccCCCCCccEEEeccCCCceE-EEEE
Confidence            2 211223   4666543334577888764 4666 3443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.10  E-value=0.049  Score=54.27  Aligned_cols=146  Identities=14%  Similarity=0.136  Sum_probs=93.0

Q ss_pred             CCceEEEEcCCCc-EEEEECCC------CeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEE
Q 011014           83 MEPFSVAVSPSGE-LLVLDSEN------NSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAI  154 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n------~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rI  154 (495)
                      ..|.+++++++|+ |+++....      ++.+.++.-.. +..-..     ...-..|.+++++++|+ ||++...+++|
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~-----~~~~~~~~~~~~~~~g~~l~~~~~~~~~v  327 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK-EKLIDT-----IGPPGNKRHIVSGNTENKIYVSDMCCSKI  327 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEEE-----EEEEECEEEEEECSSTTEEEEEETTTTEE
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-CcEEee-----ccCCCCcceEEECCCCCEEEEEecCCCEE
Confidence            3589999999885 66666422      23455553221 110000     00113678999999995 99999999999


Q ss_pred             EEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCC--------------eEEEEEC
Q 011014          155 RKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQ--------------AIREIQL  216 (495)
Q Consensus       155 rk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~--------------rI~~~d~  216 (495)
                      ++++.+.   +..+..                  ...|.+++ +.++| .||+++..++              .|+.+++
T Consensus       328 ~v~d~~~~~~~~~~~~------------------~~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~  388 (433)
T 3bws_A          328 EVYDLKEKKVQKSIPV------------------FDKPNTIA-LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT  388 (433)
T ss_dssp             EEEETTTTEEEEEEEC------------------SSSEEEEE-ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred             EEEECCCCcEEEEecC------------------CCCCCeEE-EcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence            9999654   333311                  12466788 45655 5888887643              8999998


Q ss_pred             CCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          217 HDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       217 ~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      ....+.. ......|.++++.. .+..+++++...+.|.
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~  426 (433)
T 3bws_A          389 TTDTVKEFWEAGNQPTGLDVSP-DNRYLVISDFLDHQIR  426 (433)
T ss_dssp             TTTEEEEEEECSSSEEEEEECT-TSCEEEEEETTTTEEE
T ss_pred             CCCcEEEEecCCCCCceEEEcC-CCCEEEEEECCCCeEE
Confidence            7765432 33345688898875 2446777777677773

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.08  E-value=0.015  Score=58.45  Aligned_cols=76  Identities=12%  Similarity=0.151  Sum_probs=46.1

Q ss_pred             CCceEEEEcCCCc-EEEEECC--------CCeeEEEEc-CCCCccccccC-CCcCccccCCcceEEEcCCCC-EEEEECC
Q 011014           83 MEPFSVAVSPSGE-LLVLDSE--------NNSRPKLVA-GSPEGYYGHVD-GRPRGARMNHPKGLAVDDRGN-IYIADTM  150 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~--------n~~ii~iva-Gs~~g~~G~~d-G~~~~a~f~~P~GIAVD~dGn-IYVAD~~  150 (495)
                      ..| +|++++||. |||++..        ....+.++. .+.. ..+... +......-..|.+|+++++|+ |||+...
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~  128 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS  128 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-EEEEEEcCccccccCCCcceEEECCCCCEEEEECCC
Confidence            368 999999986 8998741        112344443 2211 111100 000000125799999999997 9999875


Q ss_pred             -CCEEEEEcCC
Q 011014          151 -NMAIRKISDT  160 (495)
Q Consensus       151 -N~rIrk~d~~  160 (495)
                       .+.|.+||.+
T Consensus       129 ~~~~v~v~d~~  139 (361)
T 2oiz_A          129 PATSIGIVDVA  139 (361)
T ss_dssp             SSEEEEEEETT
T ss_pred             CCCeEEEEECC
Confidence             6889998843

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.08  E-value=0.026  Score=57.98  Aligned_cols=76  Identities=7%  Similarity=-0.084  Sum_probs=46.7

Q ss_pred             CCceEEEEcCCCc-EEEEECC--------CCeeEEEEcCCCCcccccc--CCCcCccccCCcceEEEcCCCC-EEEEECC
Q 011014           83 MEPFSVAVSPSGE-LLVLDSE--------NNSRPKLVAGSPEGYYGHV--DGRPRGARMNHPKGLAVDDRGN-IYIADTM  150 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~--------n~~ii~ivaGs~~g~~G~~--dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~  150 (495)
                      ..| +|++++||. |||+++.        ....+.+++-......+..  .+.........|.+|++++||+ |||++..
T Consensus        66 ~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~  144 (368)
T 1mda_H           66 FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred             CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC
Confidence            469 999999875 9999842        1224555542211111111  1100001136799999999995 9999875


Q ss_pred             -CCEEEE--EcC
Q 011014          151 -NMAIRK--ISD  159 (495)
Q Consensus       151 -N~rIrk--~d~  159 (495)
                       ++.|.+  +|.
T Consensus       145 ~~~~v~V~~iD~  156 (368)
T 1mda_H          145 SSAAAGLSVPGA  156 (368)
T ss_dssp             SSCEEEEEETTT
T ss_pred             CCCeEEEEEEch
Confidence             677888  875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.07  E-value=0.021  Score=56.26  Aligned_cols=123  Identities=15%  Similarity=0.125  Sum_probs=74.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G-  161 (495)
                      .+.|++.| .+.||++|. .+ .+.+++-......+...-......+..++.+... +|.|||+....+.|.+||+ +| 
T Consensus       128 eG~glt~d-g~~L~~SdG-s~-~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~  203 (262)
T 3nol_A          128 EGWGLTHN-DQYLIMSDG-TP-VLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK  203 (262)
T ss_dssp             CCCCEEEC-SSCEEECCS-SS-EEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB
T ss_pred             CceEEecC-CCEEEEECC-CC-eEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCc
Confidence            55677765 357999985 44 4555543211111110000001234556667776 7899999999999999995 55 


Q ss_pred             -cEEEecC-cccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 011014          162 -VTTIAGG-KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL  216 (495)
Q Consensus       162 -V~tiaGg-~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~  216 (495)
                       +.++.-. .... ..     ........|+|||+.+..+.|||+...=.++.++.+
T Consensus       204 V~~~Id~~~L~~~-~~-----~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          204 VTGIIDLNGILAE-AG-----PLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             EEEEEECTTGGGG-SC-----SCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEEEEECCcCccc-cc-----cccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence             3444221 1100 00     011234689999988788999999987788887765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.95  E-value=0.013  Score=60.75  Aligned_cols=113  Identities=11%  Similarity=-0.022  Sum_probs=65.2

Q ss_pred             CCceEEEEcCCCc-EEEEECCC--------CeeEEEEcCCCCcccccc---CCCcCccccCCcceEEEcCCCC-EEEEEC
Q 011014           83 MEPFSVAVSPSGE-LLVLDSEN--------NSRPKLVAGSPEGYYGHV---DGRPRGARMNHPKGLAVDDRGN-IYIADT  149 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n--------~~ii~ivaGs~~g~~G~~---dG~~~~a~f~~P~GIAVD~dGn-IYVAD~  149 (495)
                      ..|. |++++||. |||++...        ...+.+++-......+..   .|. ...--..|.++++++||+ |||+..
T Consensus        79 ~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~-r~~~g~~P~~~a~spDGk~lyVan~  156 (386)
T 3sjl_D           79 FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP-RFLVGTYPWMTSLTPDGKTLLFYQF  156 (386)
T ss_dssp             SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-CCCBSCCGGGEEECTTSSEEEEEEC
T ss_pred             CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc-ccccCCCCceEEEcCCCCEEEEEEc
Confidence            4685 99999987 99998421        124555543211111110   110 001124899999999997 999987


Q ss_pred             C-CCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCce---EEEECCCCeEEEEECCC-CeE
Q 011014          150 M-NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFD---VVYVGSSCSLLVIDRGN-QAI  211 (495)
Q Consensus       150 ~-N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~g---Va~vd~~G~LyVaD~gN-~rI  211 (495)
                      . .+.|.+||...   +.+|.-.      ++        ....|.+   ++.+..+|.+++.+... ++|
T Consensus       157 ~~~~~VsVID~~t~~vv~tI~v~------g~--------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          157 SPAPAVGVVDLEGKAFKRMLDVP------DC--------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECC------SE--------EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             CCCCeEEEEECCCCcEEEEEECC------Cc--------ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            4 78999999544   4555321      10        0112433   12255677777777754 565

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.80  E-value=0.15  Score=52.40  Aligned_cols=112  Identities=12%  Similarity=0.091  Sum_probs=73.4

Q ss_pred             cccCCcceEEE--cC-CCC--EEEEECCCCEEEEEc----CCC------cEEEecCcccCCCCCCCCCCcCcccCCCceE
Q 011014          128 ARMNHPKGLAV--DD-RGN--IYIADTMNMAIRKIS----DTG------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDV  192 (495)
Q Consensus       128 a~f~~P~GIAV--D~-dGn--IYVAD~~N~rIrk~d----~~G------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gV  192 (495)
                      ..+..|.|||+  ++ .|.  +||.+.. +++..+.    .+|      |.++.-+                  ..|.++
T Consensus       125 t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lg------------------sq~Egc  185 (355)
T 3amr_A          125 TAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMN------------------SQTEGM  185 (355)
T ss_dssp             CCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECS------------------SCEEEE
T ss_pred             CCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCC------------------CCcceE
Confidence            35689999999  77 453  8888875 7777643    234      2333111                  257788


Q ss_pred             EEECCCCeEEEEECCCCeEEEEECCCC------ceeeCCCCC---CcceEEEEecCc--CeEEEEEccCCceEEEeeCCC
Q 011014          193 VYVGSSCSLLVIDRGNQAIREIQLHDD------DCSDNYDDT---FHLGIFVLVAAA--FFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       193 a~vd~~G~LyVaD~gN~rI~~~d~~g~------~~~~~~~~g---~P~GIAvd~~a~--~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                      ++.+..|.|||++... .|++|+.+..      .+......+   -+.||++.....  +.+++++-.++.+  .++..+
T Consensus       186 vvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~--~Vydr~  262 (355)
T 3amr_A          186 AADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY--AIYDRQ  262 (355)
T ss_dssp             EEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE--EEEESS
T ss_pred             EEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE--EEEECC
Confidence            8777899999999984 5999996522      222222332   389999974332  3677888777777  555543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=96.74  E-value=0.11  Score=53.73  Aligned_cols=195  Identities=8%  Similarity=0.041  Sum_probs=111.6

Q ss_pred             eeeeeccceEEEEeCCCCce---------ecCCceeEec--CC--ceEE-EeecCC--CCCCCceEEEEc-C-------C
Q 011014           38 NVVSALVKWLWSLKDSPKTA---------VSSSSMIKFE--GG--YTVE-TVFEGS--KFGMEPFSVAVS-P-------S   93 (495)
Q Consensus        38 ~ia~a~~~~I~~~d~~t~~~---------vaG~~i~~~~--~G--~~~~-~~~~G~--~~~~~P~GIAVd-~-------d   93 (495)
                      .+....-.++|.+|......         .-+..++.++  .+  ..+. ..+...  .....-.+|+|| .       +
T Consensus        91 ~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~  170 (381)
T 3q6k_A           91 QPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSE  170 (381)
T ss_dssp             EEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCS
T ss_pred             EEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCc
Confidence            34446679999998664321         1122333332  22  2221 122111  112356789999 2       4


Q ss_pred             CcEEEEECCCCeeEEEEcCCCC--c----cccc-------cCCCcCccccCCcceEEEcCC----C-CEEEEECCCCEEE
Q 011014           94 GELLVLDSENNSRPKLVAGSPE--G----YYGH-------VDGRPRGARMNHPKGLAVDDR----G-NIYIADTMNMAIR  155 (495)
Q Consensus        94 G~LyVaDs~n~~ii~ivaGs~~--g----~~G~-------~dG~~~~a~f~~P~GIAVD~d----G-nIYVAD~~N~rIr  155 (495)
                      +.+||+|....+++.+-..+..  .    .+-.       .+|..- .....-.|||++++    + .||..-....++.
T Consensus       171 ~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~-~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly  249 (381)
T 3q6k_A          171 TFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEY-EFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVY  249 (381)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEE-EECCCEEEEEECCCCTTSCCEEEEEESSCSEEE
T ss_pred             cEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEe-EeccCceEEEecCCcCCCCeEEEEEECCCCcEE
Confidence            6799999987766544322210  0    0000       011100 00135569999986    3 4999999888999


Q ss_pred             EEcC----CC-----cEEEecCcccCCCCCCCCCCcCcccCCCceEEEEC-CCCeEEEEECCCCeEEEEECCC-Cc----
Q 011014          156 KISD----TG-----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG-SSCSLLVIDRGNQAIREIQLHD-DD----  220 (495)
Q Consensus       156 k~d~----~G-----V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd-~~G~LyVaD~gN~rI~~~d~~g-~~----  220 (495)
                      .+..    +.     +..+ |.. |        +     -....+.+ +| .+|+||+++..++.|.+.++++ ..    
T Consensus       250 ~V~T~~L~~~~~~~~v~~~-G~k-g--------~-----~s~~~~~~-~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n  313 (381)
T 3q6k_A          250 SVNTKELKQKGGKLNPELL-GNR-G--------K-----YNDAIALA-YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKN  313 (381)
T ss_dssp             EEEHHHHSSTTCCCCCEEE-EEC-C--------T-----TCCEEEEE-ECTTTCEEEEEESSSSEEEEEETTSCSBCGGG
T ss_pred             EEEHHHhhCcchhhceEEe-eec-C--------C-----CCCcceEE-EeCCCCeEEEEeccCCeEEEEeCCCCccccCc
Confidence            8872    22     3332 211 0        0     01222345 55 8999999999999999999998 22    


Q ss_pred             ---eeeCCCCCCcceEEEEecCcCeEEEEEccCC
Q 011014          221 ---CSDNYDDTFHLGIFVLVAAAFFGYMLALLQR  251 (495)
Q Consensus       221 ---~~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~  251 (495)
                         +......-+|.+++++.  .+.+|++.-..+
T Consensus       314 ~~~l~~d~~l~~pd~~~i~~--~g~Lwv~sn~l~  345 (381)
T 3q6k_A          314 TDVVYTSSRFVFGTDISVDS--KGGLWFMSNGFP  345 (381)
T ss_dssp             EEEEEECTTCCSEEEEEECT--TSCEEEEECSCC
T ss_pred             eEEEEECCCccccCeEEECC--CCeEEEEECcch
Confidence               22234555799999985  668999885433

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.70  E-value=0.073  Score=50.41  Aligned_cols=131  Identities=15%  Similarity=0.078  Sum_probs=81.6

Q ss_pred             CCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcC-CC--cEEEec
Q 011014           92 PSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD-TG--VTTIAG  167 (495)
Q Consensus        92 ~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~-~G--V~tiaG  167 (495)
                      .++.|++-|..+...+..+...         +     ....|.+++++++|+ |||++...+.|.++|. ++  +.++..
T Consensus         9 ~~~~v~~~d~~~~~~~~~~~~~---------~-----~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            9 RPDKLVVIDTEKMAVDKVITIA---------D-----AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEEECT---------T-----CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEEcC---------C-----CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence            4677888777665444333210         0     001488999999995 8999999999999995 44  333422


Q ss_pred             CcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEEC-----------CCCeEEEEECCCCceee-CCCCCCcceEE
Q 011014          168 GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDR-----------GNQAIREIQLHDDDCSD-NYDDTFHLGIF  234 (495)
Q Consensus       168 g~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~-----------gN~rI~~~d~~g~~~~~-~~~~g~P~GIA  234 (495)
                      +..+            ..-..|.+++ ++++| .||+++.           .++.|.++++.+..+.. ......|.+++
T Consensus        75 ~~~~------------~~~~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  141 (337)
T 1pby_B           75 STPE------------ERVKSLFGAA-LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLA  141 (337)
T ss_dssp             CBTT------------EEEECTTCEE-ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEE
T ss_pred             CCcc------------cccccccceE-ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeE
Confidence            1100            0112577888 56666 7899862           36899999998765532 22334578888


Q ss_pred             EEecCcCeEEEEEccCCce
Q 011014          235 VLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv  253 (495)
                      +... +..+|++   +.+|
T Consensus       142 ~s~d-g~~l~~~---~~~i  156 (337)
T 1pby_B          142 WARD-GSKLYGL---GRDL  156 (337)
T ss_dssp             ECTT-SSCEEEE---SSSE
T ss_pred             ECCC-CCEEEEe---CCeE
Confidence            7752 3456776   3455

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.67  E-value=0.03  Score=58.74  Aligned_cols=79  Identities=11%  Similarity=0.048  Sum_probs=55.6

Q ss_pred             CcceEEEcCCCC-EEEEEC---------CCCEEEEEcCCC---cEEEe-cCcccCCCCCCCCCCcCcccCCCceEEEECC
Q 011014          132 HPKGLAVDDRGN-IYIADT---------MNMAIRKISDTG---VTTIA-GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS  197 (495)
Q Consensus       132 ~P~GIAVD~dGn-IYVAD~---------~N~rIrk~d~~G---V~tia-Gg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~  197 (495)
                      .| ||++++||+ |||+++         ..+.|.+||...   +.+|. ++...           ......|.++++.++
T Consensus       120 ~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r-----------~~~g~~P~~~~~spD  187 (426)
T 3c75_H          120 LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR-----------FLVGTYQWMNALTPD  187 (426)
T ss_dssp             SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-----------CCBSCCGGGSEECTT
T ss_pred             CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc-----------cccCCCcceEEEcCC
Confidence            58 999999997 999986         356799999654   44442 21100           001246899995444


Q ss_pred             CCeEEEEECC-CCeEEEEECCCCcee
Q 011014          198 SCSLLVIDRG-NQAIREIQLHDDDCS  222 (495)
Q Consensus       198 ~G~LyVaD~g-N~rI~~~d~~g~~~~  222 (495)
                      ...|||++.. .+.|.+||+....+.
T Consensus       188 Gk~lyV~n~~~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          188 NKNLLFYQFSPAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCEEEEEecCCCCeEEEEECCCCeEE
Confidence            4489999975 789999999987654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.57  E-value=0.039  Score=57.18  Aligned_cols=80  Identities=15%  Similarity=0.081  Sum_probs=54.6

Q ss_pred             CcceEEEcCCCC-EEEEECC---------CCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCC
Q 011014          132 HPKGLAVDDRGN-IYIADTM---------NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS  198 (495)
Q Consensus       132 ~P~GIAVD~dGn-IYVAD~~---------N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~  198 (495)
                      .|. |+++++|+ |||+++.         .+.|.+||...   +.++.-+...          ....-..|.++++..+.
T Consensus        80 ~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~----------r~~~g~~P~~~a~spDG  148 (386)
T 3sjl_D           80 LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP----------RFLVGTYPWMTSLTPDG  148 (386)
T ss_dssp             SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC----------CCCBSCCGGGEEECTTS
T ss_pred             CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc----------ccccCCCCceEEEcCCC
Confidence            474 99999997 9999852         46799999655   4444211100          00112479999954444


Q ss_pred             CeEEEEECC-CCeEEEEECCCCcee
Q 011014          199 CSLLVIDRG-NQAIREIQLHDDDCS  222 (495)
Q Consensus       199 G~LyVaD~g-N~rI~~~d~~g~~~~  222 (495)
                      ..|||++.. .+.|.+||+....+.
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~vv  173 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAFK  173 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcEE
Confidence            479999974 789999999987754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.54  E-value=0.028  Score=59.67  Aligned_cols=66  Identities=9%  Similarity=-0.124  Sum_probs=47.4

Q ss_pred             CCCceEEEECCCCeEEEEECCCCeEEEEECCCC----ceee--CCC-------------CCCcceEEEEecCcCeEEEEE
Q 011014          187 SNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD----DCSD--NYD-------------DTFHLGIFVLVAAAFFGYMLA  247 (495)
Q Consensus       187 ~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~----~~~~--~~~-------------~g~P~GIAvd~~a~~~~yv~d  247 (495)
                      ..|.+|.+..++..|||++++.+.|.+|+....    .+..  .++             .|.|.+++++. .+..+||+.
T Consensus       321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN  399 (462)
T 2ece_A          321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN  399 (462)
T ss_dssp             CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred             CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence            568999965555679999999999999997522    1111  111             13599999986 356899999


Q ss_pred             ccCCce
Q 011014          248 LLQRRV  253 (495)
Q Consensus       248 ~~~~Rv  253 (495)
                      .+-.++
T Consensus       400 sl~~~w  405 (462)
T 2ece_A          400 SLYSTW  405 (462)
T ss_dssp             CCCHHH
T ss_pred             CCcccc
Confidence            776666

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.42  E-value=0.024  Score=61.98  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=43.7

Q ss_pred             ccccCCcceEEEcCCCCEEEEEC------------CCCEEEEEcCC-C-cEEEecCcccCCCCCCCCCCcCcccCCCceE
Q 011014          127 GARMNHPKGLAVDDRGNIYIADT------------MNMAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDV  192 (495)
Q Consensus       127 ~a~f~~P~GIAVD~dGnIYVAD~------------~N~rIrk~d~~-G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gV  192 (495)
                      ...|+.|-+|+||+.|+|||+.-            .|+.+..+++. | ++.|+-+..+               ...+|+
T Consensus       472 ~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g---------------aE~TG~  536 (592)
T 3zwu_A          472 QNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG---------------CEVTGI  536 (592)
T ss_dssp             TTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT---------------CEEEEE
T ss_pred             CCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC---------------ccCcCe
Confidence            34699999999999999999853            36788888854 5 7777654322               134677


Q ss_pred             EEECCCCeEEEE
Q 011014          193 VYVGSSCSLLVI  204 (495)
Q Consensus       193 a~vd~~G~LyVa  204 (495)
                      ++.++...|||.
T Consensus       537 ~fspDg~tlfvn  548 (592)
T 3zwu_A          537 SFSPDQKTLFVG  548 (592)
T ss_dssp             EECTTSSEEEEE
T ss_pred             eECCCCCEEEEE
Confidence            754444567765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.41  E-value=0.024  Score=54.29  Aligned_cols=99  Identities=8%  Similarity=-0.042  Sum_probs=68.4

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCC
Q 011014          133 PKGLAVDDRGNIYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGN  208 (495)
Q Consensus       133 P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN  208 (495)
                      ++|+++.+++.+||+...++.|+++|.. +  +.++..+.                ...|.+++ +.++| .+||++..+
T Consensus         2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~----------------~~~~~~~~-~s~dg~~~~v~~~~~   64 (349)
T 1jmx_B            2 DTGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD----------------KFGPGTAM-MAPDNRTAYVLNNHY   64 (349)
T ss_dssp             --CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS----------------CCSSCEEE-ECTTSSEEEEEETTT
T ss_pred             CccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC----------------CCCCceeE-ECCCCCEEEEEeCCC
Confidence            4588888899999999999999999954 4  33442210                11477888 56666 589999999


Q ss_pred             CeEEEEECCCCceee-C--CC-----CCCcceEEEEecCcCeEEEEEcc
Q 011014          209 QAIREIQLHDDDCSD-N--YD-----DTFHLGIFVLVAAAFFGYMLALL  249 (495)
Q Consensus       209 ~rI~~~d~~g~~~~~-~--~~-----~g~P~GIAvd~~a~~~~yv~d~~  249 (495)
                      +.|.++++.+..+.. .  ..     ...|.+++++.. +..+|++...
T Consensus        65 ~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~  112 (349)
T 1jmx_B           65 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVNP  112 (349)
T ss_dssp             TEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEEE
T ss_pred             CcEEEEeCCCCcEEEEEEcccccccccccccceEECCC-CCEEEEEccc
Confidence            999999998766542 1  11     113788998752 4467877744

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.36  E-value=0.05  Score=52.01  Aligned_cols=132  Identities=10%  Similarity=0.055  Sum_probs=75.9

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--c
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--V  162 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--V  162 (495)
                      ...+++|++|+|||+.   .++ ..+..+.....-. .     ..-.....+++|++|+|||+.. ++.|.+++.+|  +
T Consensus       179 ~~~~~~d~~g~l~v~t---~~l-~~~d~~g~~~~~~-~-----~~~~~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~  247 (330)
T 3hxj_A          179 TSAASIGKDGTIYFGS---DKV-YAINPDGTEKWNF-Y-----AGYWTVTRPAISEDGTIYVTSL-DGHLYAINPDGTEK  247 (330)
T ss_dssp             CSCCEECTTCCEEEES---SSE-EEECTTSCEEEEE-C-----CSSCCCSCCEECTTSCEEEEET-TTEEEEECTTSCEE
T ss_pred             eeeeEEcCCCEEEEEe---CEE-EEECCCCcEEEEE-c-----cCCcceeceEECCCCeEEEEcC-CCeEEEECCCCCEe
Confidence            3456777788888877   223 3333221111000 0     0113466889999999999975 57888898877  2


Q ss_pred             EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC-CCCCCcceEEEEecCcC
Q 011014          163 TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-YDDTFHLGIFVLVAAAF  241 (495)
Q Consensus       163 ~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~-~~~g~P~GIAvd~~a~~  241 (495)
                      ..+...  +               ..+..++ ++.++.|||+.. ++.|.+++++|...... ........+++|.  .+
T Consensus       248 ~~~~~~--~---------------~~~~~~~-~~~~g~l~v~t~-~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~--~g  306 (330)
T 3hxj_A          248 WRFKTG--K---------------RIESSPV-IGNTDTIYFGSY-DGHLYAINPDGTEKWNFETGSWIIATPVIDE--NG  306 (330)
T ss_dssp             EEEECS--S---------------CCCSCCE-ECTTSCEEEECT-TCEEEEECTTSCEEEEEECSSCCCSCCEECT--TC
T ss_pred             EEeeCC--C---------------Cccccce-EcCCCeEEEecC-CCCEEEECCCCcEEEEEEcCCccccceEEcC--CC
Confidence            222110  0               0122344 577889999875 45799999877655432 2222345666654  55


Q ss_pred             eEEEEEc
Q 011014          242 FGYMLAL  248 (495)
Q Consensus       242 ~~yv~d~  248 (495)
                      .+|+...
T Consensus       307 ~l~~gt~  313 (330)
T 3hxj_A          307 TIYFGTR  313 (330)
T ss_dssp             CEEEECT
T ss_pred             EEEEEcC
Confidence            6777543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.33  E-value=0.037  Score=60.52  Aligned_cols=116  Identities=10%  Similarity=0.075  Sum_probs=74.8

Q ss_pred             CCcceEEEcCCCC-EEEEECCCCEEEEEcCCCcE-EEecCcccCCCCCCCCC-CcCcccCCCceEEEECCCCeEEEEECC
Q 011014          131 NHPKGLAVDDRGN-IYIADTMNMAIRKISDTGVT-TIAGGKWSRGVGHVDGP-SEDAKFSNDFDVVYVGSSCSLLVIDRG  207 (495)
Q Consensus       131 ~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~GV~-tiaGg~~G~~~g~~dG~-~~~a~f~~P~gVa~vd~~G~LyVaD~g  207 (495)
                      ..|.||++++||. +||++...++|.+||-+... .+.|.-.     ..+-. .....=..|..++ ++.+|++|++..-
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~-----~~~~v~~~v~vG~gP~h~a-F~~dG~aY~t~~l  350 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD-----PRSAVVAEPELGLGPLHTA-FDGRGNAYTSLFL  350 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC-----GGGGEEECCBCCSCEEEEE-ECTTSEEEEEETT
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC-----cccceEEEcCCCCCcceEE-ECCCCeEEEEEec
Confidence            5899999999998 99999999999999965321 0000000     00000 0000013699999 6888899999999


Q ss_pred             CCeEEEEECCC----------Ccee-e---CCCCC---CcceEEEEecCcCeEEEEEccC-Cce
Q 011014          208 NQAIREIQLHD----------DDCS-D---NYDDT---FHLGIFVLVAAAFFGYMLALLQ-RRV  253 (495)
Q Consensus       208 N~rI~~~d~~g----------~~~~-~---~~~~g---~P~GIAvd~~a~~~~yv~d~~~-~Rv  253 (495)
                      .+.|.+++.+.          ..+. .   ....|   ...|+++.. .+.++|+++.+. .|+
T Consensus       351 dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          351 DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEESCCTTSS
T ss_pred             CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCCCCcccc
Confidence            99999999876          2221 1   11111   134555443 356899999887 787

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.32  E-value=0.056  Score=54.17  Aligned_cols=78  Identities=12%  Similarity=0.071  Sum_probs=53.8

Q ss_pred             CcceEEEcCCCC-EEEEEC---------CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCC
Q 011014          132 HPKGLAVDDRGN-IYIADT---------MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS  198 (495)
Q Consensus       132 ~P~GIAVD~dGn-IYVAD~---------~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~  198 (495)
                      .| +|+++++|+ |||++.         ..+.|.+||...   +.++......           ...-..|.++++ +++
T Consensus        52 ~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-----------~~~g~~p~~i~~-spd  118 (361)
T 2oiz_A           52 NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-----------VQGLNYDGLFRQ-TTD  118 (361)
T ss_dssp             EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-----------CCBCCCGGGEEE-CTT
T ss_pred             CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-----------cccCCCcceEEE-CCC
Confidence            57 999999997 999974         245699999554   4444221100           001247899994 555


Q ss_pred             C-eEEEEECC-CCeEEEEECCCCcee
Q 011014          199 C-SLLVIDRG-NQAIREIQLHDDDCS  222 (495)
Q Consensus       199 G-~LyVaD~g-N~rI~~~d~~g~~~~  222 (495)
                      | .|||++.+ .+.|.+|+++...+.
T Consensus       119 g~~l~v~n~~~~~~v~v~d~~~~~~~  144 (361)
T 2oiz_A          119 GKFIVLQNASPATSIGIVDVAKGDYV  144 (361)
T ss_dssp             SSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred             CCEEEEECCCCCCeEEEEECCCCcEE
Confidence            5 79999976 789999999886654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.30  E-value=0.044  Score=58.00  Aligned_cols=116  Identities=15%  Similarity=0.084  Sum_probs=66.3

Q ss_pred             CCceEEEEcCC-----C--cEEEEEC-CCC---eeEEEE-cCCCCccccccCCCcCcccc-----CCcceEEEcC-----
Q 011014           83 MEPFSVAVSPS-----G--ELLVLDS-ENN---SRPKLV-AGSPEGYYGHVDGRPRGARM-----NHPKGLAVDD-----  140 (495)
Q Consensus        83 ~~P~GIAVd~d-----G--~LyVaDs-~n~---~ii~iv-aGs~~g~~G~~dG~~~~a~f-----~~P~GIAVD~-----  140 (495)
                      .+|.|+++|+.     |  .+|++|. +.+   ..+..+ .|..   .|.. .+  ...+     ..|.|+++-.     
T Consensus       217 RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~---yG~~-~P--~~~~~~~~g~Ap~G~~~Y~G~~fP  290 (463)
T 2wg3_C          217 HDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKD---YESE-PS--LLEFKPFSNGPLVGGFVYRGCQSE  290 (463)
T ss_dssp             SSCCBEEEESSCSSTTCSEEEEEECC------CEEEEEEC-------CCSC-CC--CEECCC----CEEEEEECCCSSCT
T ss_pred             CCcceEEECCCCCCcccceEEEecccCCCCCCCCeEeeeccCCC---CCCC-CC--eEEeeCCCCccccceEEEeCCCCh
Confidence            48999999986     5  5677886 222   223222 3332   2221 11  1111     3678999852     


Q ss_pred             --CCCEEEEECCCCEEEEEcC--CC-c---EEE-ecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC-----
Q 011014          141 --RGNIYIADTMNMAIRKISD--TG-V---TTI-AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-----  206 (495)
Q Consensus       141 --dGnIYVAD~~N~rIrk~d~--~G-V---~ti-aGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~-----  206 (495)
                        .|.++|+|.. .+|.++..  ++ +   ..+ .+. ...        ........|.+|+ ++.+|.|||+|.     
T Consensus       291 ~~~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~-~~~--------~~~~~~~r~~~v~-~~pdG~Lyv~~~~~~~~  359 (463)
T 2wg3_C          291 RLYGSYVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGT-SGS--------CRGYFSGHILGFG-EDELGEVYILSSSKSMT  359 (463)
T ss_dssp             TTTTCEEEEETT-SCEEEEEC-----CCEEEEECEEE-TTS--------SCSCCCSEEEEEE-ECTTCCEEEEEESSCGG
T ss_pred             hhcceEEEecCC-CcEEEEEeCCCCceeeEEEeecCC-ccc--------ccccccCcceEEE-ECCCCCEEEEeccCCcc
Confidence              4669999996 77888763  22 1   112 111 000        0011235789998 799999999996     


Q ss_pred             --CCCeEEEEE
Q 011014          207 --GNQAIREIQ  215 (495)
Q Consensus       207 --gN~rI~~~d  215 (495)
                        .+++|++|.
T Consensus       360 ~~~~G~I~Ri~  370 (463)
T 2wg3_C          360 QTHNGKLYKIV  370 (463)
T ss_dssp             GCSSEEEEEEE
T ss_pred             cCCCCcEEEec
Confidence              578999998

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.20  E-value=0.11  Score=52.70  Aligned_cols=86  Identities=14%  Similarity=0.215  Sum_probs=60.7

Q ss_pred             Ccce---EEEcCCCC-EEEEEC---------CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEE
Q 011014          132 HPKG---LAVDDRGN-IYIADT---------MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV  195 (495)
Q Consensus       132 ~P~G---IAVD~dGn-IYVAD~---------~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v  195 (495)
                      .|.|   ++++++|+ |||+..         .++.|.+||...   +.++..+                  ..|.+|+ +
T Consensus       265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g------------------~~p~~i~-~  325 (373)
T 2mad_H          265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG------------------HDVDAIS-V  325 (373)
T ss_pred             ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC------------------CCcCeEE-E
Confidence            4666   89998765 999854         246899999654   4555321                  1588998 5


Q ss_pred             CCCCe--EEEEECCCCeEEEEECCCCceeeC-CC-CCCcceEEEE
Q 011014          196 GSSCS--LLVIDRGNQAIREIQLHDDDCSDN-YD-DTFHLGIFVL  236 (495)
Q Consensus       196 d~~G~--LyVaD~gN~rI~~~d~~g~~~~~~-~~-~g~P~GIAvd  236 (495)
                      +.+|.  +|++..+++.|.+||..+..+... .. ...|.+|.+.
T Consensus       326 s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~~~  370 (373)
T 2mad_H          326 AQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             CCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEEEEc
Confidence            66665  788887899999999988665533 33 3368888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.98  E-value=0.077  Score=50.71  Aligned_cols=137  Identities=9%  Similarity=0.044  Sum_probs=79.9

Q ss_pred             eEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCCcEEE
Q 011014           86 FSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTI  165 (495)
Q Consensus        86 ~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~GV~ti  165 (495)
                      ..++++++|+|||+...+  .+..+...+.-..-. ..     .-.....+++|.+|+|||+.   +.|.+++.+|....
T Consensus       140 ~~~~~~~~g~l~vgt~~~--~l~~~d~~g~~~~~~-~~-----~~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~  208 (330)
T 3hxj_A          140 ATPIVSEDGTIYVGSNDN--YLYAINPDGTEKWRF-KT-----NDAITSAASIGKDGTIYFGS---DKVYAINPDGTEKW  208 (330)
T ss_dssp             SCCEECTTSCEEEECTTS--EEEEECTTSCEEEEE-EC-----SSCCCSCCEECTTCCEEEES---SSEEEECTTSCEEE
T ss_pred             eeeEEcCCCEEEEEcCCC--EEEEECCCCCEeEEE-ec-----CCCceeeeEEcCCCEEEEEe---CEEEEECCCCcEEE
Confidence            445778788888876433  233333221100000 00     01234567899999999997   78999997773222


Q ss_pred             ecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEE
Q 011014          166 AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGY  244 (495)
Q Consensus       166 aGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~y  244 (495)
                      .-...               -.....++ .+.+|.|||+.. ++.|.+++.++..... ......+..++++.  .+.+|
T Consensus       209 ~~~~~---------------~~~~~~~~-~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~--~g~l~  269 (330)
T 3hxj_A          209 NFYAG---------------YWTVTRPA-ISEDGTIYVTSL-DGHLYAINPDGTEKWRFKTGKRIESSPVIGN--TDTIY  269 (330)
T ss_dssp             EECCS---------------SCCCSCCE-ECTTSCEEEEET-TTEEEEECTTSCEEEEEECSSCCCSCCEECT--TSCEE
T ss_pred             EEccC---------------CcceeceE-ECCCCeEEEEcC-CCeEEEECCCCCEeEEeeCCCCccccceEcC--CCeEE
Confidence            11000               02244556 688899999986 5678888887766543 22333455666664  56778


Q ss_pred             EEEccCCce
Q 011014          245 MLALLQRRV  253 (495)
Q Consensus       245 v~d~~~~Rv  253 (495)
                      +... +..|
T Consensus       270 v~t~-~ggl  277 (330)
T 3hxj_A          270 FGSY-DGHL  277 (330)
T ss_dssp             EECT-TCEE
T ss_pred             EecC-CCCE
Confidence            7654 3456

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.92  E-value=0.075  Score=52.87  Aligned_cols=100  Identities=7%  Similarity=0.013  Sum_probs=62.7

Q ss_pred             EcCC-CCEEEEECCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEE
Q 011014          138 VDDR-GNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIRE  213 (495)
Q Consensus       138 VD~d-GnIYVAD~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~  213 (495)
                      ++.+ +.||.+|.+...|.+++.+|  ..++..+                    +..+++.+..+.||.+|..+ .+|.+
T Consensus       152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--------------------~~~~~~~P~g~~iy~t~~~~~~~I~~  211 (302)
T 3s25_A          152 CNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--------------------NCYKPVVLDDTNVYYMDVNRDNAIVH  211 (302)
T ss_dssp             SEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--------------------CEEEEEEEETTEEEEEEGGGTTEEEE
T ss_pred             eeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--------------------CccceeeecCCEEEEEEcCCCcEEEE
Confidence            3443 46999999889999999777  3444211                    11122245678999999754 68999


Q ss_pred             EECCCCceeeCCCCCCcceEEEEecCcCeEEEE-EccCCceEEEeeCCC
Q 011014          214 IQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYML-ALLQRRVQAMFSSKD  261 (495)
Q Consensus       214 ~d~~g~~~~~~~~~g~P~GIAvd~~a~~~~yv~-d~~~~Rv~~~~~s~~  261 (495)
                      ++++|...........|. ++.+   +..||.+ +.....+..+-.+..
T Consensus       212 ~~ldG~~~~~Lt~~~~~~-~~~~---g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          212 VNINNPNPVVLTEANIEH-YNVY---GSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             ECSSSCCCEECSCSCEEE-EEEE---TTEEEEEECSSSCEEEEEETTSC
T ss_pred             EECCCCCeEEEeCCCcce-EEEC---CCEEEEEECCCCcEEEEEECCCC
Confidence            999998766544444444 5554   4566765 444455554444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.37  E-value=0.06  Score=55.32  Aligned_cols=118  Identities=22%  Similarity=0.247  Sum_probs=70.4

Q ss_pred             CCceEEEE--cC-CCc--EEEEECCCCeeEE--EEc-CCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCE
Q 011014           83 MEPFSVAV--SP-SGE--LLVLDSENNSRPK--LVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMA  153 (495)
Q Consensus        83 ~~P~GIAV--d~-dG~--LyVaDs~n~~ii~--iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~r  153 (495)
                      ..|.|||+  ++ .|.  +||++.... +.+  +.. +.+. ..+..-...  ..-..|.|+++|+ .|.|||++-. ..
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~-~~q~~l~~~~~g~-~~~~lVR~f--~lgsq~EgcvvDd~~g~Lyv~eEd-~G  202 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGE-FEQYELKADKNGY-ISGKKVRAF--KMNSQTEGMAADDEYGRLYIAEED-EA  202 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSC-EEEEEEEEE--ECSSCEEEEEEETTTTEEEEEETT-TE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCe-EEEEEEEeCCCCc-ccceEEEEe--cCCCCcceEEEcCCCCeEEEeccc-ce
Confidence            68999999  77 454  777776532 323  322 2210 000000000  0013688999996 7889999986 55


Q ss_pred             EEEEcCC--C---cEEEecCcccCCCCCCCCCCcCcccC-CCceEEEE-CC--CCeEEEEECCCCeEEEEECCC
Q 011014          154 IRKISDT--G---VTTIAGGKWSRGVGHVDGPSEDAKFS-NDFDVVYV-GS--SCSLLVIDRGNQAIREIQLHD  218 (495)
Q Consensus       154 Irk~d~~--G---V~tiaGg~~G~~~g~~dG~~~~a~f~-~P~gVa~v-d~--~G~LyVaD~gN~rI~~~d~~g  218 (495)
                      |++|+.+  +   -..++--..             ..|. .+.||++. ..  .|.|+|++.+++...+|+..+
T Consensus       203 Iw~~da~p~~~~~~~~v~~~~~-------------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          203 IWKFSAEPDGGSNGTVIDRADG-------------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEEECSTTSCSCCEEEEEBSS-------------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EEEEeCCcCCCCCceEEEEecC-------------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            9999933  3   122211000             1122 68889864 22  257999999999999999874

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=95.29  E-value=0.18  Score=51.56  Aligned_cols=107  Identities=14%  Similarity=-0.043  Sum_probs=65.8

Q ss_pred             CcceEEEcCCCC-EEEEEC---------CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCC
Q 011014          132 HPKGLAVDDRGN-IYIADT---------MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS  198 (495)
Q Consensus       132 ~P~GIAVD~dGn-IYVAD~---------~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~  198 (495)
                      .| ||+++++|. |||+++         ..+.|.+||...   +.++.-+..+          .......|.++++.++.
T Consensus        67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~----------~~~~g~~P~~ia~SpDG  135 (368)
T 1mda_H           67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP----------RFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC----------SCCBSCCTTSEEECTTS
T ss_pred             CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc----------ccccCCCcceEEEcCCC
Confidence            48 999999886 999984         368899999544   5555321000          00112579999954444


Q ss_pred             CeEEEEECC-CCeEEE--EECCCCceeeCCCCCCcceEEEEecCcCeEEEEEccCCceEE
Q 011014          199 CSLLVIDRG-NQAIRE--IQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQA  255 (495)
Q Consensus       199 G~LyVaD~g-N~rI~~--~d~~g~~~~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~  255 (495)
                      ..|||++.. ++.|.+  ||+..  .....-.+. ..+.-+   +...|++.+..+++..
T Consensus       136 k~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~-~~~~p~---g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          136 ACLLFFLFGSSAAAGLSVPGASD--DQLTKSASC-FHIHPG---AAATHYLGSCPASLAA  189 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEE--EEEEECSSC-CCCEEE---ETTEEECCCCTTSCEE
T ss_pred             CEEEEEccCCCCeEEEEEEchhh--ceEEECCCc-eEEccC---CCeEEEEEcCCCCEEE
Confidence            489999976 678888  88766  222211111 112222   3456777777777733

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.25  E-value=0.98  Score=49.81  Aligned_cols=140  Identities=4%  Similarity=-0.062  Sum_probs=75.9

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC-
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-  161 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-  161 (495)
                      +.-..|+.|++|.|||...  .++ ..+.+.. +.+-....... .....-..|+.|.+|+|||+-.  +.|.+++... 
T Consensus        88 n~I~~i~~d~~g~lWigT~--~Gl-~~yd~~~-~~f~~~~~~~~-~~~~~i~~i~~d~~g~lwi~t~--~gl~~~~~~~~  160 (795)
T 4a2l_A           88 DISRIVKTDSQGRVWIGTR--DGL-SRYDEEK-DIFQNFFYEKN-GKHLQVNGIEEISPEQLLISTP--EGLIMFDIKES  160 (795)
T ss_dssp             SCEEEEEECTTSCEEEEES--SCE-EEEETTT-TEEEEECCEET-TEECCCCEEEEEETTEEEEEET--TEEEEEETTTT
T ss_pred             cceeEEEECCCCCEEEEeC--Cch-heeCCCC-CeEEecccccc-CCCceEEEEEECCCCCEEEEEC--CceEEEECCCC
Confidence            4567889999999999875  223 3333221 11100000000 0000156799999999999964  6789998643 


Q ss_pred             cEEEecCcccCCCCCCCCCCcCcccCC-CceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCC---CCCCcceEEEEe
Q 011014          162 VTTIAGGKWSRGVGHVDGPSEDAKFSN-DFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY---DDTFHLGIFVLV  237 (495)
Q Consensus       162 V~tiaGg~~G~~~g~~dG~~~~a~f~~-P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~---~~g~P~GIAvd~  237 (495)
                      .......          +    ..... ...++ .+.+|.|||...+ +.|.++++.+..+....   ....-..|+.|.
T Consensus       161 ~~~~~~~----------~----~~~~~~i~~i~-~d~~g~lwigt~~-~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  224 (795)
T 4a2l_A          161 KFIDDSF----------S----TAMHKTIASTL-YRQGDQIYIGTST-DGLYTYSITQKTFEKVIPILGTKQIQAILQQS  224 (795)
T ss_dssp             EEECSSS----------C----HHHHTCCEEEE-EEETTEEEEEESS-SCEEEEETTTCCEEECC----CCCEEEEEEEE
T ss_pred             EEEeccC----------C----CCCCcceEEEE-ECCCCCEEEEECC-CCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC
Confidence            2111000          0    00011 34555 6788999998643 35889998776554321   112234566664


Q ss_pred             cCcCeEEEEE
Q 011014          238 AAAFFGYMLA  247 (495)
Q Consensus       238 ~a~~~~yv~d  247 (495)
                        .+.++|..
T Consensus       225 --~g~lwigt  232 (795)
T 4a2l_A          225 --PTRIWVAT  232 (795)
T ss_dssp             --TTEEEEEE
T ss_pred             --CCCEEEEE
Confidence              45556554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.09  E-value=1.8  Score=47.52  Aligned_cols=147  Identities=7%  Similarity=-0.072  Sum_probs=87.1

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCC-ccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPE-GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~-g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      .....|+.|++|+|||+..  .++..+-..+.. ........  .....+...+|+.|.+|+|||+-.+ +-|.+++.++
T Consensus       450 ~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~d~~g~lWigt~~-~Gl~~~~~~~  524 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSN--SQLLENFVRSIAQDSEGRFWIGTFG-GGVGIYTPDM  524 (781)
T ss_dssp             CCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTTT--SSCSCSCEEEEEECTTCCEEEEESS-SCEEEECTTC
T ss_pred             CeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCcc--cccccceeEEEEEcCCCCEEEEEcC-CCEEEEeCCC
Confidence            3567899999999999976  334444322211 11110010  0011245679999999999999753 4488899765


Q ss_pred             --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee-eCCCCCCc----ceEE
Q 011014          162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS-DNYDDTFH----LGIF  234 (495)
Q Consensus       162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~-~~~~~g~P----~GIA  234 (495)
                        +..+.. .        .+.    .-+...+|+ .|.+|+|||+.. ++.|.++++.+..+. +....|+|    .+|+
T Consensus       525 ~~~~~~~~-~--------~~l----~~~~i~~i~-~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~  589 (781)
T 3v9f_A          525 QLVRKFNQ-Y--------EGF----CSNTINQIY-RSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAIS  589 (781)
T ss_dssp             CEEEEECT-T--------TTC----SCSCEEEEE-ECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEE
T ss_pred             CeEEEccC-C--------CCC----CCCeeEEEE-ECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEE
Confidence              333311 1        110    012335666 689999999986 444489998775543 33334443    4677


Q ss_pred             EEecCcCeEEEEEccCCce
Q 011014          235 VLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv  253 (495)
                      .|.  .+.+|++.  +..+
T Consensus       590 ~d~--~g~lW~~t--~~Gl  604 (781)
T 3v9f_A          590 EDK--NGNIWAST--NTGI  604 (781)
T ss_dssp             ECS--SSCEEEEC--SSCE
T ss_pred             ECC--CCCEEEEc--CCce
Confidence            775  56788775  4556

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.97  E-value=1  Score=44.59  Aligned_cols=104  Identities=11%  Similarity=0.062  Sum_probs=67.2

Q ss_pred             cceEEEcC-CCCEEEEECCC-CEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEE-ECC
Q 011014          133 PKGLAVDD-RGNIYIADTMN-MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI-DRG  207 (495)
Q Consensus       133 P~GIAVD~-dGnIYVAD~~N-~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVa-D~g  207 (495)
                      +..+++++ .+.||.+|..+ .+|.+++.+|  ...+.-.                .+  |. +.  ...+.||.+ |..
T Consensus       186 ~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~----------------~~--~~-~~--~~g~~Iy~~~~~~  244 (302)
T 3s25_A          186 NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA----------------NI--EH-YN--VYGSLIFYQRGGD  244 (302)
T ss_dssp             CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS----------------CE--EE-EE--EETTEEEEEECSS
T ss_pred             CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC----------------Cc--ce-EE--ECCCEEEEEECCC
Confidence            33445664 56799999764 6999999888  4444210                01  22 33  345688886 677


Q ss_pred             CCeEEEEECCCCceeeCCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCC
Q 011014          208 NQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       208 N~rI~~~d~~g~~~~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                      ...|.+++++|.......... ...|++.   +..||.++...+.|.++-.+..
T Consensus       245 ~~~i~~~~~DG~~r~~l~~~~-~~~i~i~---~d~Iy~td~~~~~i~~~~~dGs  294 (302)
T 3s25_A          245 NPALCVVKNDGTGFKELAKGE-FCNINVT---SQYVYFTDFVSNKEYCTSTQNP  294 (302)
T ss_dssp             SCEEEEEETTSCCCEEEEESC-EEEEEEC---SSEEEEEETTTCCEEEEESSSC
T ss_pred             CcEEEEEECCCCccEEeeCCc-cceEEEe---CCEEEEEECCCCeEEEEECCCC
Confidence            799999999997644322111 2355554   6899999998888876654433

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.86  E-value=0.15  Score=55.21  Aligned_cols=97  Identities=14%  Similarity=0.009  Sum_probs=69.2

Q ss_pred             EcCCCCEEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEE
Q 011014          138 VDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIRE  213 (495)
Q Consensus       138 VD~dGnIYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~  213 (495)
                      .|+.+.+||+....+.|.+||.+.   +.++..+                  ..|++++ ++.+| .|||++. .+.|.+
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g------------------~~p~~v~-~SpDGr~lyv~~~-dg~V~v  222 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG------------------YAVHISR-LSASGRYLFVIGR-DGKVNM  222 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS------------------SCEEEEE-ECTTSCEEEEEET-TSEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC------------------CCccceE-ECCCCCEEEEEcC-CCeEEE
Confidence            455667999999999999999654   4455321                  1477888 45555 6899985 568999


Q ss_pred             EECC--C-CceeeCCCCCCcceEEEEe---cCcCeEEEEEccCCceE
Q 011014          214 IQLH--D-DDCSDNYDDTFHLGIFVLV---AAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       214 ~d~~--g-~~~~~~~~~g~P~GIAvd~---~a~~~~yv~d~~~~Rv~  254 (495)
                      ||+.  . ...........|.+|++..   -.+..+|+++.+.+.|.
T Consensus       223 iD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~  269 (567)
T 1qks_A          223 IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV  269 (567)
T ss_dssp             EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             EECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEE
Confidence            9994  3 3333333334699999982   13678999999999884

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=94.76  E-value=1.9  Score=41.77  Aligned_cols=144  Identities=11%  Similarity=0.094  Sum_probs=84.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-C-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-G-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G-  161 (495)
                      ....++++++|+++++-..+. .+++..-..........+     .-.....|+++++|.++++=...+.|+.+|.. + 
T Consensus       166 ~v~~~~~spdg~~lasg~~dg-~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDG-IINIFDIATGKLLHTLEG-----HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECC-----CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred             eEEEEEECCCCCEEEEEcCCC-eEEEEECCCCcEEEEEcc-----cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence            356788888888766655444 444543211000000011     11234589999999988887778899999943 3 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAvd~~  238 (495)
                       +.++.+-.                 .....++ ..+++.++++-...+.|+.++.....+..  ....+.-.++++.. 
T Consensus       240 ~~~~~~~h~-----------------~~v~~~~-~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-  300 (321)
T 3ow8_A          240 LAGTLSGHA-----------------SWVLNVA-FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-  300 (321)
T ss_dssp             EEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred             eeEEEcCCC-----------------CceEEEE-ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-
Confidence             34442210                 1234566 46677777777777889999988766643  22233345666664 


Q ss_pred             CcCeEEEEEccCCce
Q 011014          239 AAFFGYMLALLQRRV  253 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv  253 (495)
                       .+...++......|
T Consensus       301 -~g~~l~s~~~d~~i  314 (321)
T 3ow8_A          301 -NGSKIVSVGDDQEI  314 (321)
T ss_dssp             -TSSEEEEEETTCCE
T ss_pred             -CCCEEEEEeCCCeE
Confidence             33445555555555

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=94.61  E-value=3  Score=40.28  Aligned_cols=149  Identities=13%  Similarity=0.168  Sum_probs=85.8

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G-  161 (495)
                      ....++++++|+++++-.... .+.++.-...........     .-.....++++++|+++++=..++.|+.+|. .+ 
T Consensus       124 ~~~~~~~spdg~~l~~g~~dg-~v~i~~~~~~~~~~~~~~-----~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~  197 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHVG-KVNIFGVESGKKEYSLDT-----RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK  197 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTTS-EEEEEETTTCSEEEEEEC-----SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEECCCCCEEEEEcCCC-cEEEEEcCCCceeEEecC-----CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            345688888888777766555 444443211000000000     1123458999999998888777889999994 44 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAvd~~  238 (495)
                       +.++.+-.                 ..-..++ ..+++.++++-...+.|+.++.....+..  ....+.-..+++.. 
T Consensus       198 ~~~~~~~h~-----------------~~v~~l~-~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-  258 (321)
T 3ow8_A          198 LLHTLEGHA-----------------MPIRSLT-FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-  258 (321)
T ss_dssp             EEEEECCCS-----------------SCCCEEE-ECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-
T ss_pred             EEEEEcccC-----------------CceeEEE-EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-
Confidence             44442210                 1234566 56777777777777889999887655432  22223345566654 


Q ss_pred             CcCeEEEEEccCCceEEEeeC
Q 011014          239 AAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                       .+...++......| +++.-
T Consensus       259 -~~~~l~s~s~D~~v-~iwd~  277 (321)
T 3ow8_A          259 -DDTHFVSSSSDKSV-KVWDV  277 (321)
T ss_dssp             -TSSEEEEEETTSCE-EEEET
T ss_pred             -CCCEEEEEeCCCcE-EEEeC
Confidence             33445555555666 34443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.42  E-value=0.19  Score=48.69  Aligned_cols=101  Identities=21%  Similarity=0.203  Sum_probs=59.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCC--------CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEE
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSP--------EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIR  155 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~--------~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIr  155 (495)
                      .-..||++|+|.||++.  +....++-..+.        ....|.. |   -..|   ..|.+|++|+||++ + +.+|+
T Consensus        42 ~~~~laf~P~G~LYaV~--~G~Ly~~~~~t~~~~~W~~s~t~IG~~-G---w~~F---~a~~fD~~G~LYav-~-dG~iy  110 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGVL--NDKIYKGTPPTHDNDNWMGRAKKIGNG-G---WNQF---QFLFFDPNGYLYAV-S-KDKLY  110 (236)
T ss_dssp             TCSEEEECTTSCEEEEE--TTEEEEESCCCSTTCCHHHHCEEEECS-C---GGGC---SEEEECTTSCEEEE-E-TTEEE
T ss_pred             cceeEEECCCccEEEEe--CCeEEEECCCCCCcccccccccEeccc-c---cccc---eEEEECCCCCEEEe-C-CCEEE
Confidence            56699999999999992  222333221110        0111110 0   0012   38999999999999 3 59999


Q ss_pred             EEcC--CCc-------EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 011014          156 KISD--TGV-------TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI  214 (495)
Q Consensus       156 k~d~--~GV-------~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~  214 (495)
                      ++++  ++-       ++| |.     .|.       ..|   ..|+ .+++|.||-++  +.++.+-
T Consensus       111 r~~pP~~~~~~Wl~~a~~v-g~-----~gw-------~~~---~~lf-f~p~G~Lyav~--dg~lyr~  159 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEV-GS-----GGW-------SGF---KFLF-FHPNGYLYAVH--GQQFYKA  159 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEE-EC-----SSG-------GGE---EEEE-ECTTSCEEEEE--TTEEEEE
T ss_pred             EeCCCcCCCCceeccccEe-cc-----CCC-------Cce---EEEE-ECCCceEEEEe--CCcEEec
Confidence            9995  441       222 21     010       112   3444 79999999999  4456543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.01  E-value=2.6  Score=39.30  Aligned_cols=143  Identities=7%  Similarity=-0.087  Sum_probs=79.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--  161 (495)
                      ....++++++|+++++-..+. .+.++.-.........      ..-.....++++++|+++++-..++.|+.++...  
T Consensus       185 ~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~  257 (337)
T 1gxr_A          185 GASCIDISNDGTKLWTGGLDN-TVRSWDLREGRQLQQH------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEE------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             ceEEEEECCCCCEEEEEecCC-cEEEEECCCCceEeee------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC
Confidence            456777777776555544443 3444431110000000      0112356889999998777777788899998544  


Q ss_pred             cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEEecCc
Q 011014          162 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAA  240 (495)
Q Consensus       162 V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~  240 (495)
                      ...+.+.                 -.....++ ..+++.++++-..++.|+.++........ ....+....+++..  .
T Consensus       258 ~~~~~~~-----------------~~~v~~~~-~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~--~  317 (337)
T 1gxr_A          258 KYQLHLH-----------------ESCVLSLK-FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV--D  317 (337)
T ss_dssp             EEEECCC-----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT--T
T ss_pred             eEEEcCC-----------------ccceeEEE-ECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECC--C
Confidence            3333110                 11345566 56677766666677889999987765543 22333455666654  3


Q ss_pred             CeEEEEEccCCce
Q 011014          241 FFGYMLALLQRRV  253 (495)
Q Consensus       241 ~~~yv~d~~~~Rv  253 (495)
                      +...++......|
T Consensus       318 ~~~l~~~~~dg~i  330 (337)
T 1gxr_A          318 DKYIVTGSGDKKA  330 (337)
T ss_dssp             SCEEEEEETTSCE
T ss_pred             CCEEEEecCCCeE
Confidence            3334444455555

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=93.94  E-value=1.5  Score=45.22  Aligned_cols=129  Identities=13%  Similarity=0.178  Sum_probs=76.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--  161 (495)
                      .-.+|++.+++.++++-..+. .+++..-+..-. ....+     .-.....|+++++|.++++=..++.|+.++.+|  
T Consensus       428 ~v~~~~~s~d~~~l~~~~~d~-~v~~w~~~~~~~-~~~~~-----~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~  500 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASASDDK-TVKLWNRNGQLL-QTLTG-----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL  500 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-EEEEEETTSCEE-EEEEC-----CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCE
T ss_pred             CeEEEEECCCCCEEEEEcCCC-EEEEEECCCCEE-EEEcC-----CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCE
Confidence            346788888887766655444 444443221000 00000     112346899999999888877789999999877  


Q ss_pred             cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCC-CCCcceEEEEe
Q 011014          162 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYD-DTFHLGIFVLV  237 (495)
Q Consensus       162 V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~-~g~P~GIAvd~  237 (495)
                      +.++.+-.                 .....|+ ..++|.++++-...+.|+.++..+..+....+ .+.-.++++..
T Consensus       501 ~~~~~~h~-----------------~~v~~l~-~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~  559 (577)
T 2ymu_A          501 LQTLTGHS-----------------SSVRGVA-FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP  559 (577)
T ss_dssp             EEEEECCS-----------------SCEEEEE-ECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT
T ss_pred             EEEEeCCC-----------------CCEEEEE-EcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcC
Confidence            45553311                 1234566 46667666665566788888877765544322 23345566654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=93.88  E-value=2.7  Score=40.68  Aligned_cols=73  Identities=12%  Similarity=0.064  Sum_probs=49.0

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014          133 PKGLAVDDRGNIYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  209 (495)
Q Consensus       133 P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~  209 (495)
                      ...|+++++|+++++=...+.|+.+|.. +  +.++...               .....-..++ ..++|.++++-..++
T Consensus       229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---------------~~~~~v~~~~-~s~~g~~l~~g~~d~  292 (340)
T 1got_B          229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD---------------NIICGITSVS-FSKSGRLLLAGYDDF  292 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---------------TCCSCEEEEE-ECTTSSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC---------------CcccceEEEE-ECCCCCEEEEECCCC
Confidence            4589999999988888788899999944 3  3333110               0011234555 577788877777788


Q ss_pred             eEEEEECCCCce
Q 011014          210 AIREIQLHDDDC  221 (495)
Q Consensus       210 rI~~~d~~g~~~  221 (495)
                      .|+.++.....+
T Consensus       293 ~i~vwd~~~~~~  304 (340)
T 1got_B          293 NCNVWDALKADR  304 (340)
T ss_dssp             EEEEEETTTCCE
T ss_pred             eEEEEEcccCcE
Confidence            899998765443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=93.83  E-value=0.59  Score=48.31  Aligned_cols=101  Identities=15%  Similarity=0.197  Sum_probs=66.6

Q ss_pred             CceEEEEcCC----C-cEEEEECCCCeeEEEEc-----CCC---CccccccCCCcCccccCCcceEEEc-CCCCEEEEEC
Q 011014           84 EPFSVAVSPS----G-ELLVLDSENNSRPKLVA-----GSP---EGYYGHVDGRPRGARMNHPKGLAVD-DRGNIYIADT  149 (495)
Q Consensus        84 ~P~GIAVd~d----G-~LyVaDs~n~~ii~iva-----Gs~---~g~~G~~dG~~~~a~f~~P~GIAVD-~dGnIYVAD~  149 (495)
                      .-.|||++++    + .||+.--.......+-.     .+.   ....|. .|     ......++++| .+|+||+++.
T Consensus       221 Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~-kg-----~~s~~~~~~~D~~~G~ly~~~~  294 (381)
T 3q6k_A          221 GIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGN-RG-----KYNDAIALAYDPKTKVIFFAEA  294 (381)
T ss_dssp             CEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEE-CC-----TTCCEEEEEECTTTCEEEEEES
T ss_pred             CceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeee-cC-----CCCCcceEEEeCCCCeEEEEec
Confidence            5679999885    3 48888866654444421     111   011111 00     01223467897 7999999999


Q ss_pred             CCCEEEEEcCCC-------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC
Q 011014          150 MNMAIRKISDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR  206 (495)
Q Consensus       150 ~N~rIrk~d~~G-------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~  206 (495)
                      .++.|..+++++       +.+++-               +..|..|.++. ++.+|.|||...
T Consensus       295 ~~~aI~~w~~~~~~~~~~n~~~l~~---------------d~~l~~pd~~~-i~~~g~Lwv~sn  342 (381)
T 3q6k_A          295 NTKQVSCWNTQKMPLRMKNTDVVYT---------------SSRFVFGTDIS-VDSKGGLWFMSN  342 (381)
T ss_dssp             SSSEEEEEETTSCSBCGGGEEEEEE---------------CTTCCSEEEEE-ECTTSCEEEEEC
T ss_pred             cCCeEEEEeCCCCccccCceEEEEE---------------CCCccccCeEE-ECCCCeEEEEEC
Confidence            999999999765       344431               22688999998 788999999873

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=93.75  E-value=1.6  Score=48.17  Aligned_cols=150  Identities=7%  Similarity=-0.005  Sum_probs=86.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--  161 (495)
                      ....|+.|++|+|||+.. + ++.++-..+..-.... ........-+...+|+.|.+|+|||+-..  .|.+++...  
T Consensus       499 ~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~~  573 (795)
T 4a2l_A          499 QITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDIQKAS-ILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEKDKQ  573 (795)
T ss_dssp             CEEEEEECTTCCEEEEES-S-CEEEEEEETTEEEECC-CSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETTTTE
T ss_pred             eEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeEEEec-CCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCCCCc
Confidence            457889999999999987 3 3444322111001000 00000011234568999999999999753  789999654  


Q ss_pred             cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCc------ceEE
Q 011014          162 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFH------LGIF  234 (495)
Q Consensus       162 V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P------~GIA  234 (495)
                      +..+ ....        |...    +.-.+|+ .|.+|+|||+-  ++.|.+|+++...+.. ....|+|      .+++
T Consensus       574 ~~~~-~~~~--------gl~~----~~i~~i~-~d~~g~lWi~t--~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~  637 (795)
T 4a2l_A          574 IKRY-NTTN--------GLPN----NVVYGIL-EDSFGRLWLST--NRGISCFNPETEKFRNFTESDGLQSNQFNTASYC  637 (795)
T ss_dssp             EEEE-CGGG--------TCSC----SCEEEEE-ECTTSCEEEEE--TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEE
T ss_pred             EEEe-CCCC--------CCch----hheEEEE-ECCCCCEEEEc--CCceEEEcCCCCcEEEcCCcCCCccccCccCcee
Confidence            3333 2111        1111    1224565 78999999998  5789999998876653 3334443      3444


Q ss_pred             EEecCcCeEEEEEccCCceEEEeeCC
Q 011014          235 VLVAAAFFGYMLALLQRRVQAMFSSK  260 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv~~~~~s~  260 (495)
                      .+.  .+.+|+...  ..+  ..|+.
T Consensus       638 ~~~--~G~l~~g~~--~Gl--~~~~p  657 (795)
T 4a2l_A          638 RTS--VGQMYFGGI--NGI--TTFRP  657 (795)
T ss_dssp             ECT--TSCEEEEET--TEE--EEECG
T ss_pred             ECC--CCeEEEecC--Cce--EEEcH
Confidence            443  566777654  355  44443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=93.65  E-value=1  Score=47.74  Aligned_cols=115  Identities=15%  Similarity=0.148  Sum_probs=75.7

Q ss_pred             cCCcceEEEcCCCCEEEEECCC------CEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe
Q 011014          130 MNHPKGLAVDDRGNIYIADTMN------MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS  200 (495)
Q Consensus       130 f~~P~GIAVD~dGnIYVAD~~N------~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~  200 (495)
                      +..|.++...++| |||+..++      +.|.++|...   +.++.-   +.      +   .  -..+.++.+....+.
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~---~~------~---~--~~~~Yd~~~~p~~~~  201 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI---DR------G---D--QYLAYDFWWNLPNEV  201 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS---BC------T---T--CCCCCCEEEETTTTE
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc---CC------C---C--ccccceEEECCCCCE
Confidence            3479999999999 99988876      7999999764   333321   10      0   0  113445665555556


Q ss_pred             EEEEECC------------------CCeEEEEECCCCceee---CC-CCCCcceEEEE-ecCcCeEEEEEc-----cCCc
Q 011014          201 LLVIDRG------------------NQAIREIQLHDDDCSD---NY-DDTFHLGIFVL-VAAAFFGYMLAL-----LQRR  252 (495)
Q Consensus       201 LyVaD~g------------------N~rI~~~d~~g~~~~~---~~-~~g~P~GIAvd-~~a~~~~yv~d~-----~~~R  252 (495)
                      +|+++++                  .++|..++++......   .+ ....|..|.+. ...+..+||++-     +.+.
T Consensus       202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~  281 (462)
T 2ece_A          202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSS  281 (462)
T ss_dssp             EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE
T ss_pred             EEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCce
Confidence            7777743                  8999999998754432   22 22368888872 223568999998     8888


Q ss_pred             eEEEeeC
Q 011014          253 VQAMFSS  259 (495)
Q Consensus       253 v~~~~~s  259 (495)
                      |..+..+
T Consensus       282 V~v~~~d  288 (462)
T 2ece_A          282 IWLWFYE  288 (462)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            8544443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=93.56  E-value=4.7  Score=37.53  Aligned_cols=143  Identities=8%  Similarity=0.098  Sum_probs=79.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-C-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-G-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G-  161 (495)
                      ....++++++|+++++-..+. .+.+..-..........+     .-.....++++++|+++++-..++.|+.+|.. + 
T Consensus       143 ~i~~~~~~~~~~~l~~~~~dg-~v~~~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          143 ACYALAISPDSKVCFSCCSDG-NIAVWDLHNQTLVRQFQG-----HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCceeeeeec-----ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence            356788888887655544433 344432111000000000     11245689999999877777778999999954 4 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEEecC
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAA  239 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a  239 (495)
                       +..+..                  -.....++ ..+++.++++-..++.|+.++........ ....+....+++..  
T Consensus       217 ~~~~~~~------------------~~~v~~~~-~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~--  275 (337)
T 1gxr_A          217 QLQQHDF------------------TSQIFSLG-YCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY--  275 (337)
T ss_dssp             EEEEEEC------------------SSCEEEEE-ECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT--
T ss_pred             eEeeecC------------------CCceEEEE-ECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC--
Confidence             223211                  01234455 45666666665667788888887765543 22333456666664  


Q ss_pred             cCeEEEEEccCCce
Q 011014          240 AFFGYMLALLQRRV  253 (495)
Q Consensus       240 ~~~~yv~d~~~~Rv  253 (495)
                      .+...++......|
T Consensus       276 ~~~~l~~~~~dg~i  289 (337)
T 1gxr_A          276 CGKWFVSTGKDNLL  289 (337)
T ss_dssp             TSSEEEEEETTSEE
T ss_pred             CCCEEEEecCCCcE
Confidence            33444555555556

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=93.39  E-value=0.66  Score=50.69  Aligned_cols=110  Identities=16%  Similarity=0.164  Sum_probs=66.6

Q ss_pred             ccccCCcceEEEcC-CCCEEEEECCC---------------------CEEEEEcCCC-----------cEEEecCcccCC
Q 011014          127 GARMNHPKGLAVDD-RGNIYIADTMN---------------------MAIRKISDTG-----------VTTIAGGKWSRG  173 (495)
Q Consensus       127 ~a~f~~P~GIAVD~-dGnIYVAD~~N---------------------~rIrk~d~~G-----------V~tiaGg~~G~~  173 (495)
                      ...|.+|.||++++ +|.||||-+.|                     +.|.++..++           +..++|......
T Consensus       380 AT~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~  459 (592)
T 3zwu_A          380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA  459 (592)
T ss_dssp             CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred             eEEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccc
Confidence            45799999999997 89999998753                     4688887322           122222111000


Q ss_pred             C---CCCCCCCcCcccCCCceEEEECCCCeEEEEEC------------CCCeEEEEECCCCceee---CCCCCCcceEEE
Q 011014          174 V---GHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR------------GNQAIREIQLHDDDCSD---NYDDTFHLGIFV  235 (495)
Q Consensus       174 ~---g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~------------gN~rI~~~d~~g~~~~~---~~~~g~P~GIAv  235 (495)
                      .   +..........|+.|-.|+ +++.|+|||+.-            +|+.+..+++....+..   .....-..|+++
T Consensus       460 ~~~~~~~~~~~~~~~f~~PDNL~-fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~f  538 (592)
T 3zwu_A          460 GTPKGGSSNITPQNMFNSPDGLG-FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISF  538 (592)
T ss_dssp             TSGGGCCTTCCTTTCCCCEEEEE-ECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEE
T ss_pred             ccccccccccCCCCCccCCcceE-ECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeE
Confidence            0   0011122344699999999 689999999864            35677777766544321   111123567766


Q ss_pred             Ee
Q 011014          236 LV  237 (495)
Q Consensus       236 d~  237 (495)
                      ..
T Consensus       539 sp  540 (592)
T 3zwu_A          539 SP  540 (592)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=93.32  E-value=3.4  Score=42.43  Aligned_cols=143  Identities=13%  Similarity=0.137  Sum_probs=81.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--  161 (495)
                      ...+++++++|..+++-..+. .+++..-+..-..-. .     ..-....+|+++++|+.+++=..++.|+.++.++  
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg-~v~~~~~~~~~~~~~-~-----~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~  418 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTL-T-----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL  418 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-EEEEEETTCCEEEEE-E-----CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCE
T ss_pred             CEEEEEECCCCCEEEEEeCCC-EEEEEcCCCCEEEEe-c-----CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCE
Confidence            457888999888776655444 455543221100000 0     0112456899999999777766788999999777  


Q ss_pred             cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCC-CCCcceEEEEecCc
Q 011014          162 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYD-DTFHLGIFVLVAAA  240 (495)
Q Consensus       162 V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~-~g~P~GIAvd~~a~  240 (495)
                      +.++.+-.                 ..-.+++ +.+++.++++-..++.|+.++.++..+..... .+....+++..  .
T Consensus       419 ~~~~~~~~-----------------~~v~~~~-~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~sp--d  478 (577)
T 2ymu_A          419 LQTLTGHS-----------------SSVWGVA-FSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP--D  478 (577)
T ss_dssp             EEEEECCS-----------------SCEEEEE-ECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT--T
T ss_pred             EEEecCCC-----------------CCeEEEE-ECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcC--C
Confidence            44443311                 0123455 45566666655566778888877665543222 22335566654  3


Q ss_pred             CeEEEEEccCCce
Q 011014          241 FFGYMLALLQRRV  253 (495)
Q Consensus       241 ~~~yv~d~~~~Rv  253 (495)
                      +...++......|
T Consensus       479 ~~~las~~~d~~i  491 (577)
T 2ymu_A          479 GQTIASASDDKTV  491 (577)
T ss_dssp             SCEEEEEETTSEE
T ss_pred             CCEEEEEeCCCEE
Confidence            3444555555555

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=93.16  E-value=5.7  Score=37.31  Aligned_cols=144  Identities=14%  Similarity=0.125  Sum_probs=78.8

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G-  161 (495)
                      .-..|+++++|+++++-.... .+++..-..........+     .-..-..|+++++|+++++=..++.|++++. .+ 
T Consensus        25 ~v~~~~~s~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   98 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSADK-LIKIWGAYDGKFEKTISG-----HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK   98 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cEEEEEECCCCCEEEEeeCCC-eEEEEeCCCcccchhhcc-----CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence            356788888888666654443 344442111000000000     1123458999999998888777899999994 34 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCC-CCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYD-DTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~-~g~P~GIAvd~~  238 (495)
                       +.++.+..                 ..-..++ ..+++.++++-..++.|+.+++....+.. ... .+.-..+++.. 
T Consensus        99 ~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-  159 (312)
T 4ery_A           99 CLKTLKGHS-----------------NYVFCCN-FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-  159 (312)
T ss_dssp             EEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-
T ss_pred             EEEEEcCCC-----------------CCEEEEE-EcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-
Confidence             44443311                 0123344 45666666666667788888877655432 222 22234555554 


Q ss_pred             CcCeEEEEEccCCce
Q 011014          239 AAFFGYMLALLQRRV  253 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv  253 (495)
                       .+...++......|
T Consensus       160 -~~~~l~~~~~d~~i  173 (312)
T 4ery_A          160 -DGSLIVSSSYDGLC  173 (312)
T ss_dssp             -TSSEEEEEETTSCE
T ss_pred             -CCCEEEEEeCCCcE
Confidence             33445555555556

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=93.01  E-value=2.3  Score=46.71  Aligned_cols=151  Identities=10%  Similarity=0.006  Sum_probs=87.6

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCC-ccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPE-GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~-g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      ....+|+.|++|+|||+...+. +.++-..... ......++.    .-+...+|+.|.+|+|||+-. ++-|.+++...
T Consensus       495 ~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l----~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~  568 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGF----CSNTINQIYRSSKGQMWLATG-EGLVCFPSARN  568 (781)
T ss_dssp             SCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTC----SCSCEEEEEECTTSCEEEEET-TEEEEESCTTT
T ss_pred             ceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCC----CCCeeEEEEECCCCCEEEEEC-CCceEEECCCC
Confidence            4568899999999999986444 4433221110 001100110    123456899999999999975 44338998654


Q ss_pred             --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCc------ce
Q 011014          162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFH------LG  232 (495)
Q Consensus       162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P------~G  232 (495)
                        +..+ ....        |...    +.-.+++ .|.+|+||++-  ++.|.+|+++...+.. ....|++      ..
T Consensus       569 ~~~~~~-~~~~--------gl~~----~~i~~i~-~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~  632 (781)
T 3v9f_A          569 FDYQVF-QRKE--------GLPN----THIRAIS-EDKNGNIWAST--NTGISCYITSKKCFYTYDHSNNIPQGSFISGC  632 (781)
T ss_dssp             CCCEEE-CGGG--------TCSC----CCCCEEE-ECSSSCEEEEC--SSCEEEEETTTTEEEEECGGGTCCSSCEEEEE
T ss_pred             CcEEEc-cccC--------CCCC----ceEEEEE-ECCCCCEEEEc--CCceEEEECCCCceEEecccCCccccccccCc
Confidence              4443 2111        1111    1234676 78999999996  4569999998776543 3333443      23


Q ss_pred             EEEEecCcCeEEEEEccCCceEEEeeCCC
Q 011014          233 IFVLVAAAFFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       233 IAvd~~a~~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                      ++.+.  .+.+|+....  .+  ..|+.+
T Consensus       633 ~~~~~--~G~l~~g~~~--Gl--~~f~p~  655 (781)
T 3v9f_A          633 VTKDH--NGLIYFGSIN--GL--CFFNPD  655 (781)
T ss_dssp             EEECT--TSCEEEEETT--EE--EEECSC
T ss_pred             eEECC--CCEEEEECCC--ce--EEEChh
Confidence            44443  5667776543  55  445544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=92.31  E-value=5.3  Score=38.57  Aligned_cols=129  Identities=14%  Similarity=0.084  Sum_probs=67.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccc---cCCcceEEEcCCCCEEEEECCC---CEEEEE
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGAR---MNHPKGLAVDDRGNIYIADTMN---MAIRKI  157 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~---f~~P~GIAVD~dGnIYVAD~~N---~rIrk~  157 (495)
                      ....++++++| ++++-..+. .+.++.-..........+.  ...   -.....|+++++|+++++-..+   +.|+.+
T Consensus       188 ~i~~~~~~~~~-~l~~~~~dg-~i~i~d~~~~~~~~~~~~~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~  263 (397)
T 1sq9_A          188 FATSVDISERG-LIATGFNNG-TVQISELSTLRPLYNFESQ--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY  263 (397)
T ss_dssp             CCCEEEECTTS-EEEEECTTS-EEEEEETTTTEEEEEEECC--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred             CceEEEECCCc-eEEEEeCCC-cEEEEECCCCceeEEEecc--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence            46788999988 666665554 5555532210000000000  001   2245689999999977776666   899999


Q ss_pred             cC-CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 011014          158 SD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  221 (495)
Q Consensus       158 d~-~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~  221 (495)
                      |. ++  +.++.+..... ....   ...+.-.....++ ..+++.++++-..++.|+.++.....+
T Consensus       264 d~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (397)
T 1sq9_A          264 ETEFGERIGSLSVPTHSS-QASL---GEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKER  325 (397)
T ss_dssp             ETTTCCEEEEECBC------------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ECCCCcccceeccCcccc-cccc---cccccCCcEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence            94 44  44443310000 0000   0000111234555 456666666666778888888876554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=92.28  E-value=7.1  Score=38.59  Aligned_cols=147  Identities=14%  Similarity=0.073  Sum_probs=82.1

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC--
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG--  161 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G--  161 (495)
                      -..|+++++|+++++-.... .+++..-..........+     .-..-..|++.++|+.+++=...+.|+.+|. .+  
T Consensus       126 v~~v~~s~dg~~l~s~~~d~-~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDR-LIRIWDIENRKIVMILQG-----HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEEECCCCCEEEEEcCCC-eEEEEECCCCcEEEEEcc-----CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence            45789999998777665544 455543211000000011     1123458999999998888778899999994 44  


Q ss_pred             cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-C--------CCCCCcce
Q 011014          162 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-N--------YDDTFHLG  232 (495)
Q Consensus       162 V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~--------~~~g~P~G  232 (495)
                      +.++...                  .....+++...++.++++-...+.|+.++.....+.. .        ...+.-..
T Consensus       200 ~~~~~~~------------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          200 SLTLSIE------------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             EEEEECS------------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             EEEEEcC------------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence            2333110                  0123445333367777776677888888877655432 1        11122345


Q ss_pred             EEEEecCcCeEEEEEccCCceEEEee
Q 011014          233 IFVLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       233 IAvd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      +++..  .+...++....+.| +++.
T Consensus       262 v~~~~--~g~~l~s~s~d~~v-~~wd  284 (393)
T 1erj_A          262 VVFTR--DGQSVVSGSLDRSV-KLWN  284 (393)
T ss_dssp             EEECT--TSSEEEEEETTSEE-EEEE
T ss_pred             EEECC--CCCEEEEEeCCCEE-EEEE
Confidence            66654  34445566666666 3443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.19  E-value=0.99  Score=43.68  Aligned_cols=100  Identities=16%  Similarity=0.234  Sum_probs=62.9

Q ss_pred             cCCcceEEEcCCCCEEEEECCCCEEEEEcC-C-------CcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeE
Q 011014          130 MNHPKGLAVDDRGNIYIADTMNMAIRKISD-T-------GVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL  201 (495)
Q Consensus       130 f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~-------GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~L  201 (495)
                      +.+-..||++++|.||++  .+..+.++++ +       +..+..|..     |          .+. .+-+++|.+|.|
T Consensus        40 w~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-----G----------w~~-F~a~~fD~~G~L  101 (236)
T 1tl2_A           40 WSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-----G----------WNQ-FQFLFFDPNGYL  101 (236)
T ss_dssp             CTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-----C----------GGG-CSEEEECTTSCE
T ss_pred             cccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-----c----------ccc-ceEEEECCCCCE
Confidence            556679999999999999  5778999995 3       222222210     0          001 233558999999


Q ss_pred             EEEECCCCeEEEEECCCCceee-------CCCCCCc--ceEEEEecCcCeEEEEEccCCce
Q 011014          202 LVIDRGNQAIREIQLHDDDCSD-------NYDDTFH--LGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       202 yVaD~gN~rI~~~d~~g~~~~~-------~~~~g~P--~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      |++  .+.+|+++++..+.+.+       ....|..  .-|+++  ..++||.+.  ..++
T Consensus       102 Yav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~--p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          102 YAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH--PNGYLYAVH--GQQF  156 (236)
T ss_dssp             EEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC--TTSCEEEEE--TTEE
T ss_pred             EEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC--CCceEEEEe--CCcE
Confidence            999  45899999984433221       2222322  334444  478899887  4444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=91.99  E-value=9.9  Score=37.24  Aligned_cols=150  Identities=11%  Similarity=0.009  Sum_probs=84.3

Q ss_pred             CceEEEEcCCC-cEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC
Q 011014           84 EPFSVAVSPSG-ELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG  161 (495)
Q Consensus        84 ~P~GIAVd~dG-~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G  161 (495)
                      ....|++.++| +++++-.... .+++..-...........   ...-.....|+++++|+++++=..++.|+++|. .+
T Consensus       133 ~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          133 RVGIVAWHPTAQNVLLSAGCDN-VILVWDVGTGAAVLTLGP---DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             CEEEEEECSSBTTEEEEEETTS-CEEEEETTTTEEEEEECT---TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred             eEEEEEECcCCCCEEEEEcCCC-EEEEEECCCCCccEEEec---CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence            45778888887 5666544443 344443211000000000   001123468999999987777667899999994 44


Q ss_pred             --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEE---CCCCeEEEEECCCCce---e-eCCCCCCcce
Q 011014          162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID---RGNQAIREIQLHDDDC---S-DNYDDTFHLG  232 (495)
Q Consensus       162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD---~gN~rI~~~d~~g~~~---~-~~~~~g~P~G  232 (495)
                        +.++..+..+               ..+..++ ...++.++++-   ..++.|+.+++.....   . .....+....
T Consensus       209 ~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  272 (402)
T 2aq5_A          209 TVVAEKDRPHEG---------------TRPVHAV-FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL  272 (402)
T ss_dssp             EEEEEEECSSCS---------------SSCCEEE-ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred             ceeeeeccCCCC---------------CcceEEE-EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE
Confidence              3333111100               1245566 46678877776   6788999999877432   1 1223334566


Q ss_pred             EEEEecCcCeEEEEEccCCceE
Q 011014          233 IFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       233 IAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      ++++.. +..++++......|.
T Consensus       273 ~~~s~~-~~~l~~~g~~dg~i~  293 (402)
T 2aq5_A          273 PFFDPD-TNIVYLCGKGDSSIR  293 (402)
T ss_dssp             EEEETT-TTEEEEEETTCSCEE
T ss_pred             EEEcCC-CCEEEEEEcCCCeEE
Confidence            777752 345666776667773

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=91.29  E-value=5.9  Score=38.95  Aligned_cols=147  Identities=10%  Similarity=0.015  Sum_probs=75.6

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCC-CEEEEECCCCEEEEEcC-CC-
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIADTMNMAIRKISD-TG-  161 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dG-nIYVAD~~N~rIrk~d~-~G-  161 (495)
                      -..|++.++|+++++-+... .+++..-..........+     .-..-..+++.+++ .++++=...+.|+.+|. .+ 
T Consensus       130 V~~v~~spdg~~l~sgs~d~-~i~iwd~~~~~~~~~~~~-----h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~  203 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDI-CIKVWDLAQQVVLSSYRA-----HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK  203 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECC-----CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred             EEEEEECCCCCEEEEEeCCC-eEEEEECCCCcEEEEEcC-----cCCceEEEEecCCCCCceeeeccccccccccccccc
Confidence            46788999998777765554 445543211000000011     11233578888877 47777777889999984 33 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-C-CCCCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-N-YDDTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~-~~~g~P~GIAvd~~  238 (495)
                       +.++.....               -.....+++...++.++++-..++.|+.+|.....+.. . ...+.-..|++...
T Consensus       204 ~~~~~~~~~~---------------~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~  268 (344)
T 4gqb_B          204 PASQIGCSAP---------------GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPH  268 (344)
T ss_dssp             CEEECC-------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSS
T ss_pred             eeeeeeccee---------------eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence             333311100               11234556444466777776677888888877654432 1 11222244555431


Q ss_pred             CcCeEEEEEccCCce
Q 011014          239 AAFFGYMLALLQRRV  253 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv  253 (495)
                       +..+.++....+.|
T Consensus       269 -g~~~lasgs~D~~i  282 (344)
T 4gqb_B          269 -SVPFLASLSEDCSL  282 (344)
T ss_dssp             -SSCCEEEEETTSCE
T ss_pred             -CCeEEEEEeCCCeE
Confidence             12333444555555

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=91.24  E-value=5.7  Score=39.69  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=82.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--  161 (495)
                      ....|++++++.++++-+... .+++..-..........+     .-..-..|+++++|+++++=...+.|+.+|..+  
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg-~i~vwd~~~~~~~~~l~~-----h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~  183 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDA-TIKVWDYETGDFERTLKG-----HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE  183 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSS-CEEEEETTTCCCCEEECC-----CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred             cEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEEEec-----cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            456888999998887766555 455543211000000001     112345899999999888877888999998554  


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAvd~~  238 (495)
                       +.++.+-                 -..-..++ ..+++..+++-...+.|+.++.....+..  ......-..++... 
T Consensus       184 ~~~~~~~h-----------------~~~V~~v~-~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-  244 (410)
T 1vyh_C          184 CIRTMHGH-----------------DHNVSSVS-IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-  244 (410)
T ss_dssp             EEECCCCC-----------------SSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-
T ss_pred             eeEEEcCC-----------------CCCEEEEE-EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-
Confidence             2333111                 01223455 45666666666667888888887665532  12222223344433 


Q ss_pred             CcCeEEEEEccCCceEEEee
Q 011014          239 AAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv~~~~~  258 (495)
                       .+...++....+.| +++.
T Consensus       245 -~g~~l~s~s~D~~v-~vwd  262 (410)
T 1vyh_C          245 -DGTLIASCSNDQTV-RVWV  262 (410)
T ss_dssp             -TSSEEEEEETTSCE-EEEE
T ss_pred             -CCCEEEEEcCCCeE-EEEE
Confidence             34455566555556 3443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=90.62  E-value=12  Score=37.14  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=67.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCC-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d-~~G-  161 (495)
                      .-..|+++++|+++++-+... .+++..-..........+     .-..-..|++.++|+.+++=...+.|+.+| ..| 
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~-~i~iwd~~~~~~~~~~~~-----h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~  225 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADM-TIKLWDFQGFECIRTMHG-----HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY  225 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-CCCEEETTSSCEEECCCC-----CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             cEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeEEEcC-----CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            357888999888777765544 344442111000000011     112345899999999888877889999999 344 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  221 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~  221 (495)
                       +.++.+...                 .-..++ ...++.++++-...+.|+.++.....+
T Consensus       226 ~~~~~~~h~~-----------------~v~~~~-~~~~g~~l~s~s~D~~v~vwd~~~~~~  268 (410)
T 1vyh_C          226 CVKTFTGHRE-----------------WVRMVR-PNQDGTLIASCSNDQTVRVWVVATKEC  268 (410)
T ss_dssp             EEEEEECCSS-----------------CEEEEE-ECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             EEEEEeCCCc-----------------cEEEEE-ECCCCCEEEEEcCCCeEEEEECCCCce
Confidence             555533110                 112344 456677766666677777777766554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=90.32  E-value=9.7  Score=37.08  Aligned_cols=166  Identities=14%  Similarity=0.060  Sum_probs=83.7

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG  161 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G  161 (495)
                      .....|+++++|+++++-..+. .+++..-..........     ..-.....|+++++|+++++=...+.|+.+|. .+
T Consensus       140 ~~v~~~~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSSQDM-QLKIWSVKDGSNPRTLI-----GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTS-EEEEEETTTCCCCEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             CccEEEEECCCCCEEEEEeCCC-eEEEEeCCCCcCceEEc-----CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence            3467889999988776665554 45554321100000000     01123458999999997777777888999994 34


Q ss_pred             --cEEEecCcccCCCC-----CCCC--CCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC--C-CCCC
Q 011014          162 --VTTIAGGKWSRGVG-----HVDG--PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--Y-DDTF  229 (495)
Q Consensus       162 --V~tiaGg~~G~~~g-----~~dG--~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~--~-~~g~  229 (495)
                        +.++.+.......-     ..++  ......-.....++ ..+++.++++-..++.|+.+++........  . ..+.
T Consensus       214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  292 (420)
T 3vl1_A          214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE-FGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS  292 (420)
T ss_dssp             EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC-SSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred             ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE-EcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence              44443211000000     0000  00000011222334 356676666666677888888776554321  1 2223


Q ss_pred             cceEEEEecCcCe-EEEEEccCCceEEEee
Q 011014          230 HLGIFVLVAAAFF-GYMLALLQRRVQAMFS  258 (495)
Q Consensus       230 P~GIAvd~~a~~~-~yv~d~~~~Rv~~~~~  258 (495)
                      ...+++..  .+. ..++......| .++.
T Consensus       293 v~~~~~~~--~~~~~l~~g~~dg~i-~vwd  319 (420)
T 3vl1_A          293 CNSLTVDG--NNANYIYAGYENGML-AQWD  319 (420)
T ss_dssp             EEEEEECS--SCTTEEEEEETTSEE-EEEE
T ss_pred             ceeEEEeC--CCCCEEEEEeCCCeE-EEEE
Confidence            45666664  222 45555555666 3443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=90.30  E-value=12  Score=35.07  Aligned_cols=144  Identities=17%  Similarity=0.099  Sum_probs=78.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-C-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-G-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G-  161 (495)
                      .-..++++++|+++++-..+. .+++..-..........+     .-..-..++++++++++++=..++.|+.+|.. + 
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  140 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDK-TLKIWDVSSGKCLKTLKG-----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK  140 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-EEEEEETTTCCEEEEEEC-----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             ceEEEEEcCCCCEEEEECCCC-EEEEEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE
Confidence            457889999998777765554 455543211000000000     11223578899999988887778899999943 4 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCC-cceEEEEe
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTF-HLGIFVLV  237 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~-P~GIAvd~  237 (495)
                       +.++.+..                 ..-..++ ..+++.++++-...+.|+.+++....+..  ...... -..+++..
T Consensus       141 ~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (312)
T 4ery_A          141 CLKTLPAHS-----------------DPVSAVH-FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP  202 (312)
T ss_dssp             EEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred             EEEEecCCC-----------------CcEEEEE-EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence             34442110                 0123445 46666666666667788888887655432  111111 23345543


Q ss_pred             cCcCeEEEEEccCCce
Q 011014          238 AAAFFGYMLALLQRRV  253 (495)
Q Consensus       238 ~a~~~~yv~d~~~~Rv  253 (495)
                        .+...++......|
T Consensus       203 --~~~~l~~~~~d~~i  216 (312)
T 4ery_A          203 --NGKYILAATLDNTL  216 (312)
T ss_dssp             --TSSEEEEEETTTEE
T ss_pred             --CCCEEEEEcCCCeE
Confidence              33334444555555

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=90.24  E-value=8.4  Score=37.06  Aligned_cols=112  Identities=9%  Similarity=0.006  Sum_probs=64.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G-  161 (495)
                      ....++++++|+++++-..+. .+.++.-..........     ..-.....+++.++| ++++-..++.|+.++. .+ 
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  321 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDG-TLRIWHGGNGNSQNCFY-----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT  321 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTS-CEEEECSSSBSCSEEEC-----CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEEEEcCCC-EEEEEECCCCccceEec-----CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence            346788888887666554444 44554321100000000     011234689999998 7777677899999994 44 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD  220 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~  220 (495)
                       +.++.+..                 .....++ ..+++.++++-..++.|+.++.....
T Consensus       322 ~~~~~~~~~-----------------~~i~~~~-~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          322 LLALSIVDG-----------------VPIFAGR-ISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEEEECTT-----------------CCEEEEE-ECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EeEecccCC-----------------ccEEEEE-EcCCCCEEEEEECCCeEEEEECCCCc
Confidence             33332210                 1234555 56677777666677889988887644

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=90.07  E-value=8.3  Score=36.60  Aligned_cols=145  Identities=8%  Similarity=-0.048  Sum_probs=78.3

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEcCCCCc--cccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVAGSPEG--YYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG  161 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g--~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G  161 (495)
                      -..++++++|+++++-..++ .+++..-....  ......+     .-.....|+++++|+++++=..++.|+.++. .+
T Consensus        11 i~~~~~s~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNH-EVHIYEKSGNKWVQVHELKE-----HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSS-EEEEEEEETTEEEEEEEEEC-----CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEeCCC-EEEEEeCCCCcEEeeeeecC-----CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            46788888888777665554 44444211100  0000001     1123568999999997777667788998884 33


Q ss_pred             --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc----eee--CCCCCCcceE
Q 011014          162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD----CSD--NYDDTFHLGI  233 (495)
Q Consensus       162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~----~~~--~~~~g~P~GI  233 (495)
                        ...+.-..               .-.....++ ...++.++++-..++.|+.++.+...    +..  ....+....+
T Consensus        85 ~~~~~~~~~~---------------~~~~v~~~~-~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~  148 (372)
T 1k8k_C           85 TWKPTLVILR---------------INRAARCVR-WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL  148 (372)
T ss_dssp             EEEEEEECCC---------------CSSCEEEEE-ECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred             eeeeeEEeec---------------CCCceeEEE-ECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE
Confidence              22221100               011244566 45566655555566778877766644    221  2223345667


Q ss_pred             EEEecCcCeEEEEEccCCce
Q 011014          234 FVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv  253 (495)
                      ++..  .....++......|
T Consensus       149 ~~~~--~~~~l~~~~~dg~i  166 (372)
T 1k8k_C          149 DWHP--NSVLLAAGSCDFKC  166 (372)
T ss_dssp             EECT--TSSEEEEEETTSCE
T ss_pred             EEcC--CCCEEEEEcCCCCE
Confidence            7665  34455566666666

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=89.72  E-value=12  Score=35.95  Aligned_cols=72  Identities=13%  Similarity=0.068  Sum_probs=43.4

Q ss_pred             CcceEEEcCCCCEEEEECCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014          132 HPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  209 (495)
Q Consensus       132 ~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~  209 (495)
                      ....|+++++|+++++=..++.|+.++.++  +..+.+..                 ....+++ ..+++..+++-..++
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~~~~~d~  171 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHR-----------------APIVSVK-WNKDGTHIISMDVEN  171 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCC-----------------SCEEEEE-ECTTSSEEEEEETTC
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCC-----------------ccEEEEE-ECCCCCEEEEEecCC
Confidence            456899999999777766788999999766  44442210                 1223444 344454444434456


Q ss_pred             eEEEEECCCCce
Q 011014          210 AIREIQLHDDDC  221 (495)
Q Consensus       210 rI~~~d~~g~~~  221 (495)
                      .|+.++.....+
T Consensus       172 ~i~iwd~~~~~~  183 (425)
T 1r5m_A          172 VTILWNVISGTV  183 (425)
T ss_dssp             CEEEEETTTTEE
T ss_pred             eEEEEECCCCcE
Confidence            677777655443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=89.62  E-value=13  Score=35.09  Aligned_cols=149  Identities=11%  Similarity=0.075  Sum_probs=84.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC-
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG-  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G-  161 (495)
                      .-.+|+++|+|.++++-.... .+++..-..........+     .-..-..+++.++|+++++=...+.|+.++. .| 
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg-~v~lWd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~   88 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSG-RVELWNYETQVEVRSIQV-----TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE   88 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTS-EEEEEETTTTEEEEEEEC-----CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred             ceEEEEECCCCCEEEEEcCCC-cEEEEECCCCceeEEeec-----cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            456888999988777665544 455543221000000000     0012247888889998888778899999994 44 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee--e-CCCCCCcceEEEEe
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS--D-NYDDTFHLGIFVLV  237 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~--~-~~~~g~P~GIAvd~  237 (495)
                       +.++.+-.                 ..-..|+ ..+++.++++-...+.|+.++.......  . ....+.-..+++..
T Consensus        89 ~~~~~~~h~-----------------~~v~~~~-~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p  150 (304)
T 2ynn_A           89 KVVDFEAHP-----------------DYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP  150 (304)
T ss_dssp             EEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred             EEEEEeCCC-----------------CcEEEEE-EcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence             44443211                 1224556 5667777777777788888887765322  1 22223335566553


Q ss_pred             cCcCeEEEEEccCCceEEEee
Q 011014          238 AAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       238 ~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      . .....++....+.| +++.
T Consensus       151 ~-~~~~l~sgs~D~~v-~iwd  169 (304)
T 2ynn_A          151 K-DPSTFASGCLDRTV-KVWS  169 (304)
T ss_dssp             T-CTTEEEEEETTSEE-EEEE
T ss_pred             C-CCCEEEEEeCCCeE-EEEE
Confidence            1 23455666666666 4554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=89.40  E-value=11  Score=36.27  Aligned_cols=149  Identities=11%  Similarity=-0.037  Sum_probs=79.9

Q ss_pred             CceEEEEcCCC-cEEEEECCCCeeEEEEcCC-CCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEcCC
Q 011014           84 EPFSVAVSPSG-ELLVLDSENNSRPKLVAGS-PEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISDT  160 (495)
Q Consensus        84 ~P~GIAVd~dG-~LyVaDs~n~~ii~ivaGs-~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~~  160 (495)
                      .-..|+++++| +++++-..+. .+++..-. .....-. ..   ...-..-.+|++.+ +++++++=..++.|+.++..
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~-~~---~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGG-DIILWDYDVQNKTSFI-QG---MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTS-CEEEEETTSTTCEEEE-CC---CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred             CEEEEEECCCCCCEEEEEcCCC-eEEEEeCCCcccceee-ec---CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence            45678888887 6666554444 34444321 1000000 00   00112345889988 66776666678899999966


Q ss_pred             C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCC-CCCCcceEEEEe
Q 011014          161 G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY-DDTFHLGIFVLV  237 (495)
Q Consensus       161 G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~-~~g~P~GIAvd~  237 (495)
                      +  +..+.+...              .-.....++ ..+++.++++-..++.|+.+++.+..+.... ..+.-..+++..
T Consensus       150 ~~~~~~~~~~~~--------------~~~~v~~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          150 GSVIQVFAKTDS--------------WDYWYCCVD-VSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNP  214 (383)
T ss_dssp             SCEEEEEECCCC--------------SSCCEEEEE-EETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECS
T ss_pred             CCceEEEeccCC--------------CCCCeEEEE-ECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECC
Confidence            5  444432110              001234555 3455666666556788888888765554322 233446666665


Q ss_pred             cCcCeEEEEEccCCce
Q 011014          238 AAAFFGYMLALLQRRV  253 (495)
Q Consensus       238 ~a~~~~yv~d~~~~Rv  253 (495)
                      . +..+.++....+.|
T Consensus       215 ~-~~~~l~s~~~d~~i  229 (383)
T 3ei3_B          215 R-CDWLMATSSVDATV  229 (383)
T ss_dssp             S-CTTEEEEEETTSEE
T ss_pred             C-CCCEEEEEeCCCEE
Confidence            2 12255666666666

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=89.15  E-value=15  Score=34.49  Aligned_cols=143  Identities=7%  Similarity=-0.024  Sum_probs=76.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCC-CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-C
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-G  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~-~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G  161 (495)
                      ....++++++|+++++-..+. .+.++.-.. ........+     .-....+++++++|+++++=..++.|+.+|.. +
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDG-KISKYDVSNNYEYVDSIDL-----HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTS-EEEEEETTTTTEEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ceeEEEEcCCCCEEEEEcCCC-EEEEEECCCCcEeEEEEec-----CCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            567888888887666554444 445543221 011000000     11245689999999977777778899999943 3


Q ss_pred             --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC--------------eEEEEECCCCceee--
Q 011014          162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ--------------AIREIQLHDDDCSD--  223 (495)
Q Consensus       162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~--------------rI~~~d~~g~~~~~--  223 (495)
                        +..+...                  .....++ ..+++..+++-...+              .|+.++.....+..  
T Consensus       251 ~~~~~~~~~------------------~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  311 (369)
T 3zwl_B          251 QVLKKYETD------------------CPLNTAV-ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV  311 (369)
T ss_dssp             CEEEEEECS------------------SCEEEEE-ECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred             ceeeeecCC------------------CCceeEE-ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence              3343211                  0123344 344444333322222              67788776655432  


Q ss_pred             CCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          224 NYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       224 ~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      ....+.-..+++..  .+...++......|
T Consensus       312 ~~~~~~v~~~~~s~--~~~~l~s~~~dg~v  339 (369)
T 3zwl_B          312 QGHFGPLNTVAISP--QGTSYASGGEDGFI  339 (369)
T ss_dssp             ECCSSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred             ecccCcEEEEEECC--CCCEEEEEcCCCeE
Confidence            22333445666654  34455666666666

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=88.60  E-value=6.2  Score=38.68  Aligned_cols=147  Identities=10%  Similarity=-0.018  Sum_probs=75.6

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCC-C-
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-G-  161 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~-G-  161 (495)
                      -..|++.++|+++++-..+. .+++..-..........+     .-.....|++.+++. ++++-..++.|+.+|.. + 
T Consensus       142 V~~v~~spdg~~l~sgs~dg-~v~iwd~~~~~~~~~~~~-----h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~  215 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDF-SVKVWDLSQKAVLKSYNA-----HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK  215 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTS-CEEEEETTTTEEEEEECC-----CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred             EEEEEECCCCCEEEEEeCCC-eEEEEECCCCcEEEEEcC-----CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc
Confidence            46789999998777655444 455543221000000011     112345788888764 77777778889998843 2 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee-eC-CCCCCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS-DN-YDDTFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~-~~-~~~g~P~GIAvd~~  238 (495)
                       +..+...               ..-..+..|++.+.++.++++-..++.|+.+++....+. .. ...+.-..+++...
T Consensus       216 ~~~~~~~~---------------~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~  280 (357)
T 4g56_B          216 PATRIDFC---------------ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH  280 (357)
T ss_dssp             CBCBCCCT---------------TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSS
T ss_pred             eeeeeeec---------------cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCC
Confidence             2211110               001134556643445666666556778888887765433 22 22222345555431


Q ss_pred             CcCeEEEEEccCCce
Q 011014          239 AAFFGYMLALLQRRV  253 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv  253 (495)
                       +..+.++....+.|
T Consensus       281 -~~~~lasgs~D~~i  294 (357)
T 4g56_B          281 -SSPFLASISEDCTV  294 (357)
T ss_dssp             -SSCCEEEEETTSCE
T ss_pred             -CCCEEEEEeCCCEE
Confidence             12233444444555

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=88.50  E-value=16  Score=34.18  Aligned_cols=110  Identities=17%  Similarity=0.165  Sum_probs=62.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcC-CCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAG-SPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaG-s~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G  161 (495)
                      .-..|+++++|+++++-..+. .+.+..- +.. ......+     .-..-..|+++++|+++++=..++.|+.++. ++
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~-~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDS-SASVWYSLNGE-RLGTLDG-----HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSS-CEEEEETTTCC-EEEEECC-----CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             eEEEEEEcCCCCEEEEEeCCC-EEEEEeCCCch-hhhhhhh-----cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            456788888887666554443 3444431 110 0000000     1123458999999997777777899999994 34


Q ss_pred             --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-----CeEEEEECCCC
Q 011014          162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-----QAIREIQLHDD  219 (495)
Q Consensus       162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-----~rI~~~d~~g~  219 (495)
                        +.++...                  .....++ ..+++..+++-..+     +.|+.++....
T Consensus       107 ~~~~~~~~~------------------~~v~~~~-~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B          107 QCVATWKSP------------------VPVKRVE-FSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             CEEEEEECS------------------SCEEEEE-ECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             cEEEEeecC------------------CCeEEEE-EccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence              3443210                  1234555 45666665555555     77887776553

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=87.95  E-value=9  Score=37.45  Aligned_cols=145  Identities=10%  Similarity=-0.039  Sum_probs=79.4

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEc---CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVA---GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-  160 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~iva---Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-  160 (495)
                      -..|++.+++.++++...+.  +++..   +........ .   ....-..-..|++.++|+++++=..++.|+.+|.. 
T Consensus        97 V~~~~~s~d~~~l~~s~dg~--v~lWd~~~~~~~~~~~~-~---~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~  170 (357)
T 4g56_B           97 VTDVAWVSEKGILVASDSGA--VELWEILEKESLLVNKF-A---KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ  170 (357)
T ss_dssp             EEEEEEETTTEEEEEETTSC--EEEC--------CCCCE-E---ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEEEcCCCCEEEEECCCE--EEEeeccccceeEEEee-c---cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            46788999998888765443  44432   211000000 0   00011234589999999988877778899999954 


Q ss_pred             C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC----CCCCCcceEE
Q 011014          161 G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN----YDDTFHLGIF  234 (495)
Q Consensus       161 G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~----~~~g~P~GIA  234 (495)
                      +  +.++.+.                 -.....|++......++++-..++.|+.+++....+...    ...+.+..++
T Consensus       171 ~~~~~~~~~h-----------------~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~  233 (357)
T 4g56_B          171 KAVLKSYNAH-----------------SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVT  233 (357)
T ss_dssp             TEEEEEECCC-----------------SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEE
T ss_pred             CcEEEEEcCC-----------------CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchh
Confidence            4  3444221                 012345553333335666666778898888776544321    1222355666


Q ss_pred             EEecCcCeEEEEEccCCce
Q 011014          235 VLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv  253 (495)
                      +... +..+.++......|
T Consensus       234 ~sp~-~~~~la~g~~d~~i  251 (357)
T 4g56_B          234 WHPE-KDDTFACGDETGNV  251 (357)
T ss_dssp             ECTT-STTEEEEEESSSCE
T ss_pred             hhhc-ccceEEEeecccce
Confidence            6432 23455666666666

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=87.94  E-value=15  Score=35.93  Aligned_cols=149  Identities=7%  Similarity=-0.057  Sum_probs=80.6

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEc---CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-C
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVA---GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-T  160 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~iva---Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~  160 (495)
                      -.+|++.+++.|+++..++  .+++..   +.........    ..+.-..-..|++.++|+++++=...+.|+.+|. .
T Consensus        85 v~~~~~s~d~~l~~~s~dg--~v~lWd~~~~~~~~~~~~~----~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           85 VADLTWVGERGILVASDSG--AVELWELDENETLIVSKFC----KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EEEEEEETTTEEEEEETTS--EEEEEEECTTSSCEEEEEE----EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEEEeCCCeEEEEECCC--EEEEEeccCCCceeEeecc----ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            3578888888777665433  455542   2211110000    0000112358999999998888777889999994 4


Q ss_pred             C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-C---CCCCCcceEE
Q 011014          161 G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-N---YDDTFHLGIF  234 (495)
Q Consensus       161 G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~---~~~g~P~GIA  234 (495)
                      +  +.++.|-.                 ..-..+++...+..++++-...+.|+.+|.....+.. .   ........++
T Consensus       159 ~~~~~~~~~h~-----------------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          159 QVVLSSYRAHA-----------------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             TEEEEEECCCS-----------------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             CcEEEEEcCcC-----------------CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence            4  45553211                 1123455323333577766667888888887655432 1   1112345555


Q ss_pred             EEecCcCeEEEEEccCCceEEEee
Q 011014          235 VLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      +... +..+.++...+..| +++.
T Consensus       222 ~~p~-~~~~l~sg~~dg~v-~~wd  243 (344)
T 4gqb_B          222 WHPQ-QSEVFVFGDENGTV-SLVD  243 (344)
T ss_dssp             ECSS-CTTEEEEEETTSEE-EEEE
T ss_pred             ecCC-CCcceEEeccCCcE-EEEE
Confidence            5532 33456666666666 3443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=87.64  E-value=12  Score=35.43  Aligned_cols=145  Identities=8%  Similarity=-0.025  Sum_probs=79.0

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEE---cCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLV---AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~iv---aGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~  159 (495)
                      .....++++++|+++++-..+. .+.+.   .+.........    ....-.....|+++++|+++++-..++.|+.++.
T Consensus        97 ~~v~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (372)
T 1k8k_C           97 RAARCVRWAPNEKKFAVGSGSR-VISICYFEQENDWWVCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA  171 (372)
T ss_dssp             SCEEEEEECTTSSEEEEEETTS-SEEEEEEETTTTEEEEEEE----CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             CceeEEEECCCCCEEEEEeCCC-EEEEEEecCCCcceeeeee----ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence            3567899999888666554443 23332   12110000000    0011234569999999998887777889999983


Q ss_pred             C-------------------C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 011014          160 T-------------------G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD  218 (495)
Q Consensus       160 ~-------------------G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g  218 (495)
                      .                   +  +.++.+                 .-.....++ ..+++.++++-..++.|+.++...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~-~~~~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          172 YIKEVEERPAPTPWGSKMPFGELMFESSS-----------------SCGWVHGVC-FSANGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             CCTTTSCCCCCBTTBSCCCTTCEEEECCC-----------------CSSCEEEEE-ECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             ccccccccccccccccccchhhheEecCC-----------------CCCeEEEEE-ECCCCCEEEEEeCCCEEEEEECCC
Confidence            2                   1  111110                 011234566 466666666666778899999866


Q ss_pred             Cceee--CCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          219 DDCSD--NYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       219 ~~~~~--~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      ..+..  ....+....+++..  .+.+.++. ..+.|
T Consensus       234 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~d~~i  267 (372)
T 1k8k_C          234 KMAVATLASETLPLLAVTFIT--ESSLVAAG-HDCFP  267 (372)
T ss_dssp             TTEEEEEECSSCCEEEEEEEE--TTEEEEEE-TTSSC
T ss_pred             CceeEEEccCCCCeEEEEEec--CCCEEEEE-eCCeE
Confidence            55432  22222346677775  33333333 66666

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=87.61  E-value=24  Score=35.13  Aligned_cols=105  Identities=12%  Similarity=0.035  Sum_probs=63.8

Q ss_pred             cceEEEcC-CCCEEEEECCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014          133 PKGLAVDD-RGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  209 (495)
Q Consensus       133 P~GIAVD~-dGnIYVAD~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~  209 (495)
                      -.+|++.+ +++++++=...+.|+.+|-.+  +.++......              -..-..++ ...++.++++-..++
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~~l~~g~~dg  231 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI--------------NIWFCSLD-VSASSRMVVTGDNVG  231 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC--------------SCCCCCEE-EETTTTEEEEECSSS
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC--------------CccEEEEE-ECCCCCEEEEEeCCC
Confidence            35899986 788888877788999999655  3444322110              01223455 466777777777788


Q ss_pred             eEEEEECCCCceeeCCCC-CCcceEEEEecCcCeEEEEEccCCce
Q 011014          210 AIREIQLHDDDCSDNYDD-TFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       210 rI~~~d~~g~~~~~~~~~-g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .|+.+++.+..+...... +.-..|++... +..+.++......|
T Consensus       232 ~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~-~~~~~~s~s~d~~v  275 (435)
T 4e54_B          232 NVILLNMDGKELWNLRMHKKKVTHVALNPC-CDWFLATASVDQTV  275 (435)
T ss_dssp             BEEEEESSSCBCCCSBCCSSCEEEEEECTT-CSSEEEEEETTSBC
T ss_pred             cEeeeccCcceeEEEecccceEEeeeecCC-CceEEEEecCccee
Confidence            899999888665443222 22345555431 23455566655656

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=87.43  E-value=16  Score=36.35  Aligned_cols=146  Identities=8%  Similarity=-0.023  Sum_probs=85.9

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCc--cccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcC
Q 011014           84 EPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEG--YYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD  159 (495)
Q Consensus        84 ~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g--~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~  159 (495)
                      ...+|++++ +++++++...+. .++++.-....  ..-.    ...+.-..+..|++.++|. ++++=..++.|++++-
T Consensus       233 ~v~~v~~~p~~~~~l~s~~~dg-~i~i~d~~~~~~~~~~~----~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~  307 (430)
T 2xyi_A          233 VVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSKPSH----TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL  307 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTS-EEEEEETTCSCSSSCSE----EEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             CEeeeEEeCCCCCEEEEEeCCC-eEEEEECCCCCCCccee----EeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence            467888888 677888776665 55554322100  0000    0001123467999999886 7877777889999994


Q ss_pred             C--C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCC---------------C
Q 011014          160 T--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD---------------D  219 (495)
Q Consensus       160 ~--G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g---------------~  219 (495)
                      .  +  +.++.+..                 .....|++ .+++ .++++-...++|+.+++..               .
T Consensus       308 ~~~~~~~~~~~~h~-----------------~~v~~i~~-sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  369 (430)
T 2xyi_A          308 RNLKLKLHSFESHK-----------------DEIFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE  369 (430)
T ss_dssp             TCTTSCSEEEECCS-----------------SCEEEEEE-CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTT
T ss_pred             CCCCCCeEEeecCC-----------------CCEEEEEE-CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcc
Confidence            3  2  55553311                 12345663 4444 6777777788899998876               2


Q ss_pred             ceeeC-CCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          220 DCSDN-YDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       220 ~~~~~-~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .+... ...+.+..+++... +..+.++....+.|
T Consensus       370 ~~~~~~~h~~~v~~~~~~p~-~~~~l~s~s~dg~i  403 (430)
T 2xyi_A          370 LLFIHGGHTAKISDFSWNPN-EPWIICSVSEDNIM  403 (430)
T ss_dssp             EEEECCCCSSCEEEEEECSS-STTEEEEEETTSEE
T ss_pred             eEEEcCCCCCCceEEEECCC-CCCEEEEEECCCCE
Confidence            22222 22345778888762 22256666666666

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=86.98  E-value=22  Score=34.21  Aligned_cols=147  Identities=7%  Similarity=-0.029  Sum_probs=79.2

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC-
Q 011014           84 EPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-  161 (495)
Q Consensus        84 ~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-  161 (495)
                      .-.+|++.+ +++++++-..+. .+++..-......-. .+  ....-.....+++.++|+++++-..++.|+.++.++ 
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~-~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  195 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRG-ATTLRDFSGSVIQVF-AK--TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH  195 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTT-EEEEEETTSCEEEEE-EC--CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC
T ss_pred             ceeEEEeCCCCCCEEEEEeCCC-EEEEEECCCCceEEE-ec--cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC
Confidence            456777777 556555544443 344443211000000 00  000112356899999999888877789999999766 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCC----Ccee-eCCCCCCcceEE
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHD----DDCS-DNYDDTFHLGIF  234 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-LyVaD~gN~rI~~~d~~g----~~~~-~~~~~g~P~GIA  234 (495)
                       +.++.+..                 ....+|+ ..+++. ++++-...+.|+.+++..    ..+. .....+....++
T Consensus       196 ~~~~~~~h~-----------------~~v~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  257 (383)
T 3ei3_B          196 EIFKEKLHK-----------------AKVTHAE-FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY  257 (383)
T ss_dssp             EEEEEECSS-----------------SCEEEEE-ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEE
T ss_pred             EEEEeccCC-----------------CcEEEEE-ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEE
Confidence             44443211                 1234566 455555 666666678888888775    2332 222333445666


Q ss_pred             EEecCcCeEEEEEccCCce
Q 011014          235 VLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv  253 (495)
                      +... .+...++......|
T Consensus       258 ~s~~-~~~~l~~~~~d~~i  275 (383)
T 3ei3_B          258 FNPT-DSTKLLTTDQRNEI  275 (383)
T ss_dssp             ECTT-TSCEEEEEESSSEE
T ss_pred             EcCC-CCCEEEEEcCCCcE
Confidence            6531 22334455555666

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=86.76  E-value=20  Score=40.86  Aligned_cols=115  Identities=10%  Similarity=0.123  Sum_probs=64.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcC-CCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAG-SPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaG-s~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G  161 (495)
                      .-.+++++++|.++++-..++ .+++..- +..-. ....+     .-.....++++++|+++++=..++.|+++|. +|
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~-~i~vw~~~~~~~~-~~~~~-----h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~  689 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADK-TLQVFKAETGEKL-LDIKA-----HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG  689 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEE-EEECC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             cEEEEEECCCCCEEEEEeCCC-eEEEEECCCCCEE-EEecc-----CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence            456788999988777655444 4444432 21100 00011     1123468999999998877777889999994 44


Q ss_pred             --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECC-CCeEEEEECCCCeEEEEECCCCcee
Q 011014          162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~-~G~LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                        +.++.+...                 .-..+++.+. ++.++++-..++.|+.++.....+.
T Consensus       690 ~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~  736 (1249)
T 3sfz_A          690 KLVHTYDEHSE-----------------QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR  736 (1249)
T ss_dssp             CEEEEEECCSS-----------------CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred             ceEEEEcCCCC-----------------cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence              455533110                 1123332221 4445555556677777777665554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=86.31  E-value=26  Score=34.25  Aligned_cols=120  Identities=13%  Similarity=0.066  Sum_probs=72.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCC-CC--ccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGS-PE--GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT  160 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs-~~--g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~  160 (495)
                      .-..|++.++|+++++-+... .+++..-. ..  ..... ..............++++++|.++++-..++.|+.+|..
T Consensus       251 ~v~~v~~~p~~~~l~s~s~D~-~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          251 DINSVKFFPDGQRFGTGSDDG-TCRLFDMRTGHQLQVYNR-EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             CCCEEEECTTSSEEEEECSSS-CEEEEETTTTEEEEEECC-CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             CeEEEEEecCCCeEEEEcCCC-eEEEEECCCCcEEEEecc-cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            346788889888888776655 45554321 10  00000 000001122235689999999999998889999999943


Q ss_pred             -C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 011014          161 -G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  219 (495)
Q Consensus       161 -G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~  219 (495)
                       +  +..+.....+             .-..-..++ ..++|.++++-...+.|+..+..+.
T Consensus       329 ~~~~~~~~~~~~~~-------------h~~~v~~l~-~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          329 LAEMVLNLGTLQNS-------------HEGRISCLG-LSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             TCCEEEEECCSCSS-------------CCCCCCEEE-ECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             CCceEEEEecccCC-------------CCCceEEEE-ECCCCCEEEEeeCCCCEEEEecCCC
Confidence             3  3333111000             111235666 5788888888888888998887764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=86.17  E-value=24  Score=35.11  Aligned_cols=158  Identities=9%  Similarity=-0.030  Sum_probs=84.7

Q ss_pred             CCceEEEEcCC-CcEEEEECCCCeeEEEEcCCCC-cccc-ccCCCcC---ccccCCcceEEEcCCCC-EEEEECCCCEEE
Q 011014           83 MEPFSVAVSPS-GELLVLDSENNSRPKLVAGSPE-GYYG-HVDGRPR---GARMNHPKGLAVDDRGN-IYIADTMNMAIR  155 (495)
Q Consensus        83 ~~P~GIAVd~d-G~LyVaDs~n~~ii~ivaGs~~-g~~G-~~dG~~~---~a~f~~P~GIAVD~dGn-IYVAD~~N~rIr  155 (495)
                      ..+..|++.++ ++++++-..+. .+.++.-... .... .......   ...-....+|++++++. ++++=...+.|+
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg-~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSS-DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSS-CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred             CcEEEEEECCCCCcEEEEECCCC-cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence            36788999986 56766665554 4555431110 0000 0000000   01112457899999887 777777788899


Q ss_pred             EEcCCC----cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc----eee-CCC
Q 011014          156 KISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD----CSD-NYD  226 (495)
Q Consensus       156 k~d~~G----V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~----~~~-~~~  226 (495)
                      +++.+.    ...+.-...           ....-....+|++...++.++++...++.|+.+++....    +.. ...
T Consensus       208 vwd~~~~~~~~~~~~~~~~-----------~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          208 LWDINATPKEHRVIDAKNI-----------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             EEETTSCCBGGGEEECSEE-----------ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             EEeCCCCCCCCceecccee-----------ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            998432    011100000           000112345666434367888888888999999987642    112 222


Q ss_pred             CCCcceEEEEecCcCeEEEEEccCCce
Q 011014          227 DTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       227 ~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .+....|++... +..++++......|
T Consensus       277 ~~~v~~i~~~p~-~~~~l~tg~~dg~v  302 (430)
T 2xyi_A          277 TAEVNCLSFNPY-SEFILATGSADKTV  302 (430)
T ss_dssp             SSCEEEEEECSS-CTTEEEEEETTSEE
T ss_pred             CCCeEEEEeCCC-CCCEEEEEeCCCeE
Confidence            334566776642 23467777777777

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=86.04  E-value=29  Score=37.06  Aligned_cols=149  Identities=12%  Similarity=0.021  Sum_probs=82.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcC-CCC---ccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAG-SPE---GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaG-s~~---g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~  159 (495)
                      .-..|+++++|+++++-+... .+++..- +..   ...++         -..-..|+++++|+.+++=+..+.|++++.
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg-~v~vwd~~~~~~~~~~~~h---------~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDG-ELRLWDLAAGVSTRRFVGH---------TKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECC---------SSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             cEEEEEECCCCCEEEEEeCCC-cEEEEECCCCcceeEEeCC---------CCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            356789999999877766555 5555432 210   01111         123458899999998887777899999996


Q ss_pred             CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC--eEEEEECCCCeEEEEECCCCceee--CCCCCCcceE
Q 011014          160 TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC--SLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGI  233 (495)
Q Consensus       160 ~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G--~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GI  233 (495)
                      .+  ..++.....+             .-..-.+++ ...++  .++++-...+.|+.+++....+..  ....+.-..+
T Consensus       502 ~~~~~~~~~~~~~~-------------h~~~v~~~~-~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v  567 (694)
T 3dm0_A          502 LGECKYTISEGGEG-------------HRDWVSCVR-FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV  567 (694)
T ss_dssp             TSCEEEEECSSTTS-------------CSSCEEEEE-ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCcceeeccCCCC-------------CCCcEEEEE-EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            65  2333211100             011123444 33333  355555556777777777655432  2223334566


Q ss_pred             EEEecCcCeEEEEEccCCceEEEeeC
Q 011014          234 FVLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                      ++..  .+...++....+.| +++.-
T Consensus       568 ~~sp--dg~~l~sg~~Dg~i-~iwd~  590 (694)
T 3dm0_A          568 AVSP--DGSLCASGGKDGVV-LLWDL  590 (694)
T ss_dssp             EECT--TSSEEEEEETTSBC-EEEET
T ss_pred             EEeC--CCCEEEEEeCCCeE-EEEEC
Confidence            6664  44556666666666 34443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=85.85  E-value=19  Score=32.26  Aligned_cols=127  Identities=6%  Similarity=-0.070  Sum_probs=67.4

Q ss_pred             CCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC--C-cEEEecC
Q 011014           92 PSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT--G-VTTIAGG  168 (495)
Q Consensus        92 ~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~--G-V~tiaGg  168 (495)
                      .++.|++-|..+.....+...         .        ....+++++++|+.+++.. +..|++++.+  + ...+.-+
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~---------~--------~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~   81 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQT---------P--------ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG   81 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEE---------S--------SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT
T ss_pred             cceeEEEEeCCCCceeeeccC---------C--------cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc
Confidence            367788888766644333211         1        1345899999999666654 6789999843  3 3332111


Q ss_pred             cccCCCCCCCCCCcCcccCCCceEEEECCCCe-EEEEEC---CCCeEEEEECCCCceeeCCCCCCcceEEEEecCcCeEE
Q 011014          169 KWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDR---GNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGY  244 (495)
Q Consensus       169 ~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-LyVaD~---gN~rI~~~d~~g~~~~~~~~~g~P~GIAvd~~a~~~~y  244 (495)
                      .               .-....+++ ..++|. |+++..   +..+|..++..+..............+++... +..++
T Consensus        82 ~---------------~~~~~~~~~-~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~  144 (297)
T 2ojh_A           82 F---------------ATICNNDHG-ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPD-GKSFT  144 (297)
T ss_dssp             T---------------CCCBCSCCE-ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTT-SSEEE
T ss_pred             c---------------ccccccceE-ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCC-CCEEE
Confidence            0               001234455 345554 444442   35788888877765544333333455555532 33445


Q ss_pred             EEEccCCce
Q 011014          245 MLALLQRRV  253 (495)
Q Consensus       245 v~d~~~~Rv  253 (495)
                      ++......+
T Consensus       145 ~~~~~~~~~  153 (297)
T 2ojh_A          145 YCGIRDQVF  153 (297)
T ss_dssp             EEEEETTEE
T ss_pred             EEECCCCce
Confidence            444444444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=85.34  E-value=23  Score=34.54  Aligned_cols=73  Identities=12%  Similarity=0.047  Sum_probs=44.8

Q ss_pred             CcceEEEcC-CCCEEEEECCCCEEEEEcC-CC---------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-
Q 011014          132 HPKGLAVDD-RGNIYIADTMNMAIRKISD-TG---------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-  199 (495)
Q Consensus       132 ~P~GIAVD~-dGnIYVAD~~N~rIrk~d~-~G---------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-  199 (495)
                      .-.+|++++ +++++++=..++.|++++- ++         +.++.+.                 -.....|+ ..+++ 
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h-----------------~~~v~~~~-~~p~~~  144 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH-----------------TKRVGIVA-WHPTAQ  144 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC-----------------SSCEEEEE-ECSSBT
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC-----------------CCeEEEEE-ECcCCC
Confidence            346899999 8888887777889999983 22         2333221                 01234455 34554 


Q ss_pred             eEEEEECCCCeEEEEECCCCcee
Q 011014          200 SLLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       200 ~LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                      +++++-...+.|+.+++....+.
T Consensus       145 ~~l~s~~~dg~i~iwd~~~~~~~  167 (402)
T 2aq5_A          145 NVLLSAGCDNVILVWDVGTGAAV  167 (402)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCcc
Confidence            45555555677888887765543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=84.99  E-value=23  Score=38.55  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=67.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--  161 (495)
                      ....|..|++|+|||+...+.++.++-..+..-..-..++.   ..-..+.+|..|.+|+|||+-  ++-|.++++..  
T Consensus       473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~lWigt--~~Gl~~~~~~~~~  547 (758)
T 3ott_A          473 FINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADEL---TGEKSPNYLLCDEDGLLWVGF--HGGVMRINPKDES  547 (758)
T ss_dssp             CEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTS---CGGGCEEEEEECTTSCEEEEE--TTEEEEECC--CC
T ss_pred             eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCc---CCCcccceEEECCCCCEEEEe--cCceEEEecCCCc
Confidence            36778999999999944333445554332210000000110   012356789999999999995  35799999654  


Q ss_pred             cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee
Q 011014          162 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  223 (495)
Q Consensus       162 V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~  223 (495)
                      +..+.  .        ++..    -+...+|+ . .+|+|||+-  ++-|.+|++....+..
T Consensus       548 ~~~~~--~--------~gl~----~~~i~~i~-~-~~g~lWi~t--~~Gl~~~~~~~~~~~~  591 (758)
T 3ott_A          548 QQSIS--F--------GSFS----NNEILSMT-C-VKNSIWVST--TNGLWIIDRKTMDARQ  591 (758)
T ss_dssp             CCBCC--C--------CC-------CCEEEEE-E-ETTEEEEEE--SSCEEEEETTTCCEEE
T ss_pred             eEEec--c--------cCCC----ccceEEEE-E-CCCCEEEEC--CCCeEEEcCCCceeEE
Confidence            22220  0        1101    12345555 3 489999998  4569999998866553

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=84.82  E-value=25  Score=38.27  Aligned_cols=144  Identities=14%  Similarity=0.093  Sum_probs=79.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCC----Cccc------cccCCCcCccccCCcceEEEcCCCCEEEEECCCCE
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSP----EGYY------GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA  153 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~----~g~~------G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~r  153 (495)
                      .-..|+.|++|+|||+-..+. +..+-....    .+..      ...++.    .-+....|+.|.+|+|||+...++.
T Consensus       420 ~v~~i~~d~~g~lWigT~~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~i~~i~~d~~g~lWi~~~t~~G  494 (758)
T 3ott_A          420 WTYYIFEDTAGQLWISTCLGG-IFVVDKHKLMQSTSGQYIAEQNYSVHNGL----SGMFINQIIPDNEGNVWVLLYNNKG  494 (758)
T ss_dssp             SEEEEEECTTSEEEEEESSSC-EEEEEHHHHHHCCSSEEECSEEECGGGTC----SCSCEEEEEECTTSCEEEEETTCSS
T ss_pred             eEEEEEEcCCCCEEEEECCCc-eEEEccccccccCCcceeccccccccccc----ccceeeeEEEcCCCCEEEEccCCCC
Confidence            346788899999999876543 433321100    0000      000110    0123568999999999995444567


Q ss_pred             EEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCCCCc-
Q 011014          154 IRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFH-  230 (495)
Q Consensus       154 Irk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~g~P-  230 (495)
                      |.+++...  +..+...          +.   ..-..+.+++ .|.+|+|||+-.  +.|.++++.+.........++| 
T Consensus       495 l~~~d~~~~~~~~~~~~----------~~---~~~~~~~~i~-~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~gl~~  558 (758)
T 3ott_A          495 IDKINPRTREVTKLFAD----------EL---TGEKSPNYLL-CDEDGLLWVGFH--GGVMRINPKDESQQSISFGSFSN  558 (758)
T ss_dssp             EEEEETTTTEEEEECTT----------TS---CGGGCEEEEE-ECTTSCEEEEET--TEEEEECC--CCCCBCCCCC---
T ss_pred             cEEEeCCCCceEEecCC----------Cc---CCCcccceEE-ECCCCCEEEEec--CceEEEecCCCceEEecccCCCc
Confidence            99999654  4433110          00   0012456676 799999999974  4699999877654432233443 


Q ss_pred             ---ceEEEEecCcCeEEEEEccCCce
Q 011014          231 ---LGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       231 ---~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                         .+|..+   .+.+|++.  ++.+
T Consensus       559 ~~i~~i~~~---~g~lWi~t--~~Gl  579 (758)
T 3ott_A          559 NEILSMTCV---KNSIWVST--TNGL  579 (758)
T ss_dssp             CCEEEEEEE---TTEEEEEE--SSCE
T ss_pred             cceEEEEEC---CCCEEEEC--CCCe
Confidence               344433   45677765  4556

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=84.60  E-value=31  Score=33.62  Aligned_cols=112  Identities=10%  Similarity=-0.035  Sum_probs=71.6

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEcC-CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014          133 PKGLAVDDRGNIYIADTMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  209 (495)
Q Consensus       133 P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~  209 (495)
                      -..|++.++|+.+++=...+.|+.+|. .|  +.++......          .......-..++ ...+|.++++-..++
T Consensus       252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~-~s~~g~~l~~g~~dg  320 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR----------NDNELPIVTSVA-FSISGRLLFAGYSNG  320 (380)
T ss_dssp             CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS----------SCCSSCSCSEEE-ECSSSSEEEEECTTS
T ss_pred             eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc----------cccccCceEEEE-ECCCCCEEEEEECCC
Confidence            458999999999998888899999994 44  3444221100          011122345677 578888888888899


Q ss_pred             eEEEEECCCCceee------CCCCCCcceEEEEecCcCeEEEEEccCCceEEEee
Q 011014          210 AIREIQLHDDDCSD------NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       210 rI~~~d~~g~~~~~------~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      .|+.++.....+..      ....+.-..+++..  .+...++......| ++|.
T Consensus       321 ~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~D~~i-~iW~  372 (380)
T 3iz6_a          321 DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS--DGSALCTGSWDKNL-KIWA  372 (380)
T ss_dssp             CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS--SSSEEEEECTTSCE-EEEE
T ss_pred             CEEEEECCCCceEEEEecccCCCCCceEEEEECC--CCCEEEEeeCCCCE-EEEe
Confidence            99999987655432      12223345666664  44556677777777 3443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=83.23  E-value=5.5  Score=39.27  Aligned_cols=71  Identities=11%  Similarity=0.087  Sum_probs=51.3

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEcC-CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014          133 PKGLAVDDRGNIYIADTMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  209 (495)
Q Consensus       133 P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~  209 (495)
                      -..|+++++|+++++=...+.|+.+|. ++  +.++..+                .-..-++|+ ..++|.++++-...+
T Consensus       272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g----------------H~~~V~~v~-fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA----------------HSFAITEVT-ISPDSTYVASVSAAN  334 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS----------------SSSCEEEEE-ECTTSCEEEEEETTS
T ss_pred             eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc----------------ccCCEEEEE-ECCCCCEEEEEeCCC
Confidence            458999999998887777889999995 44  3444211                011345677 688999999888889


Q ss_pred             eEEEEECCCCc
Q 011014          210 AIREIQLHDDD  220 (495)
Q Consensus       210 rI~~~d~~g~~  220 (495)
                      .|+++++..+.
T Consensus       335 tvrvw~ip~~~  345 (365)
T 4h5i_A          335 TIHIIKLPLNY  345 (365)
T ss_dssp             EEEEEECCTTT
T ss_pred             eEEEEEcCCCC
Confidence            99999976543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=83.14  E-value=21  Score=34.43  Aligned_cols=153  Identities=8%  Similarity=0.001  Sum_probs=81.6

Q ss_pred             CceEEEEcCC-CcEEEEECCCCeeEEEEcCCCCccccccCCCc-CccccCCcceEEEcCCC-CEEEEECCCC---EEEEE
Q 011014           84 EPFSVAVSPS-GELLVLDSENNSRPKLVAGSPEGYYGHVDGRP-RGARMNHPKGLAVDDRG-NIYIADTMNM---AIRKI  157 (495)
Q Consensus        84 ~P~GIAVd~d-G~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~-~~a~f~~P~GIAVD~dG-nIYVAD~~N~---rIrk~  157 (495)
                      ....|++.++ ++++++-..+. .+++..-............. ....-.....|+++++| .++++-..++   .|+.+
T Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          167 EVISLAWNQSLAHVFASAGSSN-FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CCCEEEECSSCTTEEEEESSSS-CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             CeeEEEeCCCCCcEEEEEcCCC-CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            4568899987 67777765554 44444321100000000000 00002345689999987 5666655555   88888


Q ss_pred             cCCC----cEEEe-cCcccCCCCCCCCCCcCcccCCCceEEEECC-CCeEEEEECCCCeEEEEECCCCceee--CCCCCC
Q 011014          158 SDTG----VTTIA-GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTF  229 (495)
Q Consensus       158 d~~G----V~tia-Gg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~-~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~  229 (495)
                      |...    +.++. +                 .-.....+++ .+ ++.++++-..++.|+.+++....+..  ....+.
T Consensus       246 d~~~~~~~~~~~~~~-----------------~~~~v~~~~~-s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~  307 (416)
T 2pm9_A          246 DLRNANTPLQTLNQG-----------------HQKGILSLDW-CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW  307 (416)
T ss_dssp             ETTSTTSCSBCCCSC-----------------CSSCEEEEEE-CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC
T ss_pred             eCCCCCCCcEEeecC-----------------ccCceeEEEe-CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc
Confidence            8432    22221 1                 0113345663 44 66666666667888888877655432  222333


Q ss_pred             cceEEEEecCcC-eEEEEEccCCceEEEee
Q 011014          230 HLGIFVLVAAAF-FGYMLALLQRRVQAMFS  258 (495)
Q Consensus       230 P~GIAvd~~a~~-~~yv~d~~~~Rv~~~~~  258 (495)
                      -..+++..  .+ .++++......| .++.
T Consensus       308 v~~~~~s~--~~~~~l~s~~~d~~i-~iw~  334 (416)
T 2pm9_A          308 CFKTKFAP--EAPDLFACASFDNKI-EVQT  334 (416)
T ss_dssp             CCCEEECT--TCTTEEEECCSSSEE-EEEE
T ss_pred             eEEEEECC--CCCCEEEEEecCCcE-EEEE
Confidence            45677765  23 456666666666 3443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=82.91  E-value=23  Score=34.03  Aligned_cols=111  Identities=16%  Similarity=0.197  Sum_probs=62.9

Q ss_pred             ceEEEEcCCCcEEEEECCCCeeEEEEcCCCCc---cccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-
Q 011014           85 PFSVAVSPSGELLVLDSENNSRPKLVAGSPEG---YYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-  160 (495)
Q Consensus        85 P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g---~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-  160 (495)
                      -..|+++++|.++++-..+. .+++..-....   ..-...+     .-..-..|+++++|+++++=...+.|+.++.+ 
T Consensus        19 v~~l~~sp~g~~las~~~D~-~i~iw~~~~~~~~~~~~~~~~-----h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~   92 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDR-RIRIWGTEGDSWICKSVLSEG-----HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ   92 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTS-CEEEEEEETTEEEEEEEECSS-----CSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEcCCC-eEEEEEcCCCcceeeeeeccc-----cCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence            46789999999777765554 44443211100   0000001     11234589999999987776667778777732 


Q ss_pred             C----cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC
Q 011014          161 G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD  219 (495)
Q Consensus       161 G----V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~  219 (495)
                      +    +.++.+-.                 ..-..|+ ..++++++++-...+.|+.++....
T Consensus        93 ~~~~~~~~~~~h~-----------------~~v~~v~-~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           93 DDFECVTTLEGHE-----------------NEVKSVA-WAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             C-EEEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             CCeEEEEEccCCC-----------------CCceEEE-EeCCCCEEEEEECCCeEEEEECCCC
Confidence            2    23332210                 1224555 4666777766666777888877653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=82.80  E-value=36  Score=32.94  Aligned_cols=103  Identities=9%  Similarity=-0.037  Sum_probs=61.4

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014          133 PKGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  209 (495)
Q Consensus       133 P~GIAVD~dGnIYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~  209 (495)
                      -..|+++++|+++++=...+.|+.+|...   +..+....               .......++ ...+|.++++-...+
T Consensus       243 v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~---------------~~~~~~~~~-~s~~g~~l~~g~~d~  306 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES---------------IIFGASSVD-FSLSGRLLFAGYNDY  306 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT---------------CCSCEEEEE-ECTTSSEEEEEETTS
T ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---------------cccceeEEE-EeCCCCEEEEEECCC
Confidence            45899999999888877789999999443   33331110               011234555 567777777777778


Q ss_pred             eEEEEECCCCcee-e-CCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          210 AIREIQLHDDDCS-D-NYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       210 rI~~~d~~g~~~~-~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .|+.++.....+. . ....+.-..+++..  .+...++....+.|
T Consensus       307 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp--dg~~l~sgs~D~~v  350 (354)
T 2pbi_B          307 TINVWDVLKGSRVSILFGHENRVSTLRVSP--DGTAFCSGSWDHTL  350 (354)
T ss_dssp             CEEEEETTTCSEEEEECCCSSCEEEEEECT--TSSCEEEEETTSEE
T ss_pred             cEEEEECCCCceEEEEECCCCcEEEEEECC--CCCEEEEEcCCCCE
Confidence            8999987554432 2 22223345556554  33344555555555

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=82.77  E-value=23  Score=35.02  Aligned_cols=27  Identities=15%  Similarity=0.100  Sum_probs=22.8

Q ss_pred             ceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014          134 KGLAVDDRGNIYIADTMNMAIRKISDT  160 (495)
Q Consensus       134 ~GIAVD~dGnIYVAD~~N~rIrk~d~~  160 (495)
                      ..|++.++|+++++=+.++.|+.++..
T Consensus       151 ~sv~fspdg~~lasgs~Dg~v~iWd~~  177 (420)
T 4gga_A          151 SSVAWIKEGNYLAVGTSSAEVQLWDVQ  177 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEECCCCCEEEEEECCCeEEEEEcC
Confidence            589999999988877778899999943

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=81.75  E-value=37  Score=32.35  Aligned_cols=146  Identities=5%  Similarity=-0.081  Sum_probs=76.4

Q ss_pred             CceEEEEcC--CCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-C
Q 011014           84 EPFSVAVSP--SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-T  160 (495)
Q Consensus        84 ~P~GIAVd~--dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~  160 (495)
                      .-..|++++  +|+++++-+... .+++..-..........+    ..-.....++++++|.++++=..++.|+.+|. .
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg-~i~~wd~~~~~~~~~~~~----~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~  201 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRG-TIGFQSYEDDSQYIVHSA----KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS  201 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTC-CEEEEESSSSCEEEEECC----CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCC-cEEEEECCCCcEEEEEec----CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            356788888  888777655444 344443111000000000    01113568999999999888777899999994 3


Q ss_pred             C--c-EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC-C---CCCCcc--
Q 011014          161 G--V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN-Y---DDTFHL--  231 (495)
Q Consensus       161 G--V-~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~-~---~~g~P~--  231 (495)
                      +  + .++.++-                -..-..|+ ..++|..+++-..+ .|+.+++....+... .   ....+.  
T Consensus       202 ~~~~~~~~~~~h----------------~~~v~~l~-fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (343)
T 3lrv_A          202 PDQASSRFPVDE----------------EAKIKEVK-FADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGT  263 (343)
T ss_dssp             TTSCCEECCCCT----------------TSCEEEEE-ECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CC
T ss_pred             CCCCccEEeccC----------------CCCEEEEE-EeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccc
Confidence            3  3 3442200                01234566 46666655554444 999999887654321 1   112333  


Q ss_pred             -eEEEEecCcCeEEEEEcc-CCceE
Q 011014          232 -GIFVLVAAAFFGYMLALL-QRRVQ  254 (495)
Q Consensus       232 -GIAvd~~a~~~~yv~d~~-~~Rv~  254 (495)
                       .++++.  .+...++... .+.+.
T Consensus       264 ~~~~~~~--~g~~l~~~s~~d~~i~  286 (343)
T 3lrv_A          264 VTYDIDD--SGKNMIAYSNESNSLT  286 (343)
T ss_dssp             EEEEECT--TSSEEEEEETTTTEEE
T ss_pred             eEEEECC--CCCEEEEecCCCCcEE
Confidence             377775  3333344333 56663

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=81.69  E-value=20  Score=35.84  Aligned_cols=119  Identities=9%  Similarity=0.039  Sum_probs=61.4

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCC---CCEEEEECCCCEEEEEc-
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR---GNIYIADTMNMAIRKIS-  158 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~d---GnIYVAD~~N~rIrk~d-  158 (495)
                      ..+.+|+++++|.++++-.... .+.++.-.. +......-............|+++++   |+++++=...+.|++++ 
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g-~v~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~  227 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFG-DVYSIDINS-IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY  227 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTS-EEEEEETTS-CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEeCCC-cEEEEecCC-cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence            3678999999987555443333 344432110 00000000000112234568999998   87666655678899988 


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC  221 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~  221 (495)
                      ..+  +.++..+-                -.....++ .. ++.++++-...+.|+.+++....+
T Consensus       228 ~~~~~~~~~~~~h----------------~~~v~~~~-~s-d~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          228 PQCFIVDKWLFGH----------------KHFVSSIC-CG-KDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             SCTTCEEEECCCC----------------SSCEEEEE-EC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred             CCCceeeeeecCC----------------CCceEEEE-EC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence            334  33432110                01234455 34 555555555666777777665443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=81.49  E-value=42  Score=32.78  Aligned_cols=106  Identities=14%  Similarity=0.047  Sum_probs=59.8

Q ss_pred             CcceEEEcCCC-CEEEEEC--CCCEEEEEcC-CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEE-
Q 011014          132 HPKGLAVDDRG-NIYIADT--MNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI-  204 (495)
Q Consensus       132 ~P~GIAVD~dG-nIYVAD~--~N~rIrk~d~-~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVa-  204 (495)
                      ....|++.++| +++++-.  .++.|+.+|. .+  +.++...                  .....++ ..+++..+++ 
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~------------------~~v~~~~-~s~~~~~l~~~  321 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG------------------SQVTSLI-WSPHSKEIMST  321 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS------------------SCEEEEE-ECSSSSEEEEE
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC------------------CcEEEEE-ECCCCCeEEEE
Confidence            34689999866 5776644  5889999994 44  3444211                  1234555 4555655555 


Q ss_pred             -ECCCCeEEEEECCCCceee----CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeC
Q 011014          205 -DRGNQAIREIQLHDDDCSD----NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSS  259 (495)
Q Consensus       205 -D~gN~rI~~~d~~g~~~~~----~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s  259 (495)
                       ...++.|+.++.....+..    ....+....+++..  .+...++......| .+|.-
T Consensus       322 ~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~--dg~~l~s~~~dg~i-~iw~~  378 (401)
T 4aez_A          322 HGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP--DGRILSTAASDENL-KFWRV  378 (401)
T ss_dssp             ECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT--TSSEEEEECTTSEE-EEEEC
T ss_pred             eecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC--CCCEEEEEeCCCcE-EEEEC
Confidence             3357788888877644321    22333456666664  34445555556666 34433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=81.02  E-value=40  Score=32.22  Aligned_cols=101  Identities=9%  Similarity=0.039  Sum_probs=61.4

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEcC-CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014          133 PKGLAVDDRGNIYIADTMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  209 (495)
Q Consensus       133 P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~  209 (495)
                      -..+++.++|+++++-...+.|+.+|. .+  +.++.+..                 ....+|+ ..+++.++++-...+
T Consensus       187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~-----------------~~v~~v~-~~p~~~~l~s~s~d~  248 (340)
T 1got_B          187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-----------------SDINAIC-FFPNGNAFATGSDDA  248 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc-----------------CCEEEEE-EcCCCCEEEEEcCCC
Confidence            458999999999998888899999994 44  44442210                 1234566 566777777777778


Q ss_pred             eEEEEECCCCceee-CCCCCC---cceEEEEecCcCeEEEEEccCCce
Q 011014          210 AIREIQLHDDDCSD-NYDDTF---HLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       210 rI~~~d~~g~~~~~-~~~~g~---P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .|+.+++....... ......   -..+++..  .+...++......|
T Consensus       249 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~d~~i  294 (340)
T 1got_B          249 TCRLFDLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNC  294 (340)
T ss_dssp             CEEEEETTTTEEEEEECCTTCCSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred             cEEEEECCCCcEEEEEccCCcccceEEEEECC--CCCEEEEECCCCeE
Confidence            88888887654332 111111   23344443  33444555555555

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=80.99  E-value=31  Score=33.15  Aligned_cols=115  Identities=6%  Similarity=-0.011  Sum_probs=66.8

Q ss_pred             CceEEEEcCCC-cEEEEECCCC--eeEEEEcCCCCccccccCCCcCc-cccCCcceEEEcC-CCCEEEEECCCCEEEEEc
Q 011014           84 EPFSVAVSPSG-ELLVLDSENN--SRPKLVAGSPEGYYGHVDGRPRG-ARMNHPKGLAVDD-RGNIYIADTMNMAIRKIS  158 (495)
Q Consensus        84 ~P~GIAVd~dG-~LyVaDs~n~--~ii~ivaGs~~g~~G~~dG~~~~-a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d  158 (495)
                      ....++++++| .++++-..+.  ..+++..-......-.    ... ..-.....|++++ +++++++-..++.|+.++
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd  291 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ----TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN  291 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB----CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE----EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence            46788999887 4555544332  1334432111000000    000 1123456899998 888887777789999999


Q ss_pred             C-CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc
Q 011014          159 D-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD  220 (495)
Q Consensus       159 ~-~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~  220 (495)
                      . .+  +.++.+..                 .....++ ..+++ .++++-...+.|+.+++....
T Consensus       292 ~~~~~~~~~~~~~~-----------------~~v~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          292 PESAEQLSQFPARG-----------------NWCFKTK-FAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             SSSCCEEEEEECSS-----------------SCCCCEE-ECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             CCCCccceeecCCC-----------------CceEEEE-ECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            4 44  44443211                 1234566 45666 778877778899999987654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=80.77  E-value=43  Score=32.54  Aligned_cols=82  Identities=9%  Similarity=0.081  Sum_probs=45.2

Q ss_pred             CceEEEEcCCC-cEEEEECCCCeeEEEEcC-CCCcc---ccccCCCcC-------ccccCCcceEEEcCCCCEEEEECCC
Q 011014           84 EPFSVAVSPSG-ELLVLDSENNSRPKLVAG-SPEGY---YGHVDGRPR-------GARMNHPKGLAVDDRGNIYIADTMN  151 (495)
Q Consensus        84 ~P~GIAVd~dG-~LyVaDs~n~~ii~ivaG-s~~g~---~G~~dG~~~-------~a~f~~P~GIAVD~dGnIYVAD~~N  151 (495)
                      ....++++++| +++++-.... .+++..- +..-.   .....+...       ......-..|+++++|.++++=.. 
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-  305 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKG-TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-  305 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTS-CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-
T ss_pred             ceEEEEECCCCCcEEEEEeCCC-eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-
Confidence            46789999988 7766665554 4555432 11000   000000000       000014468999999997777666 


Q ss_pred             CEEEEEcCC--C--cEEEec
Q 011014          152 MAIRKISDT--G--VTTIAG  167 (495)
Q Consensus       152 ~rIrk~d~~--G--V~tiaG  167 (495)
                      +.|+.+|..  +  +.++.+
T Consensus       306 ~~v~iwd~~~~~~~~~~~~~  325 (447)
T 3dw8_B          306 LSVKVWDLNMENRPVETYQV  325 (447)
T ss_dssp             SEEEEEETTCCSSCSCCEES
T ss_pred             CeEEEEeCCCCccccceeec
Confidence            999999943  4  455533

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=80.23  E-value=46  Score=32.46  Aligned_cols=154  Identities=12%  Similarity=0.083  Sum_probs=82.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCC----EEEEEcC
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM----AIRKISD  159 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~----rIrk~d~  159 (495)
                      .-.+|+++|||.++++-+.+. +..+..-+..........    ..-.....|++.++|..+++=...+    .|+.++.
T Consensus       178 ~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~----~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~  252 (365)
T 4h5i_A          178 EVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDF----DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI  252 (365)
T ss_dssp             CCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCC----CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred             ceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecC----CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence            457899999999888877655 333332221110000000    0001234788999998666533222    4566663


Q ss_pred             -CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCC-CCCcceEE
Q 011014          160 -TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYD-DTFHLGIF  234 (495)
Q Consensus       160 -~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~-~g~P~GIA  234 (495)
                       .+ .........   .+         ....-..|+ +.++|.++++-...+.|+.++.....+..  ..+ .+.-..++
T Consensus       253 ~~~~~~~~~~~~~---~~---------~~~~V~~~~-~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~  319 (365)
T 4h5i_A          253 KSGNTSVLRSKQV---TN---------RFKGITSMD-VDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVT  319 (365)
T ss_dssp             ETTEEEEEEEEEE---ES---------SCSCEEEEE-ECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred             ccceecceeeeee---cC---------CCCCeEeEE-ECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence             22 111100000   00         011224566 57788887777777889999988766542  222 33346777


Q ss_pred             EEecCcCeEEEEEccCCceEEEee
Q 011014          235 VLVAAAFFGYMLALLQRRVQAMFS  258 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv~~~~~  258 (495)
                      +..  .+...++....+-|+ ++.
T Consensus       320 fSp--dg~~laS~S~D~tvr-vw~  340 (365)
T 4h5i_A          320 ISP--DSTYVASVSAANTIH-IIK  340 (365)
T ss_dssp             ECT--TSCEEEEEETTSEEE-EEE
T ss_pred             ECC--CCCEEEEEeCCCeEE-EEE
Confidence            775  455567777777773 443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=80.11  E-value=28  Score=33.74  Aligned_cols=72  Identities=15%  Similarity=0.147  Sum_probs=46.4

Q ss_pred             CcceEEEcCCCCEEEEECCCCEEEEEcC-CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC
Q 011014          132 HPKGLAVDDRGNIYIADTMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN  208 (495)
Q Consensus       132 ~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN  208 (495)
                      ....|+++++|+++++=..++.|+.++. ++  +.++.+..                 ....+++ ..+++.++++-...
T Consensus       141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-----------------~~v~~~~-~~~~~~~l~s~~~d  202 (420)
T 3vl1_A          141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR-----------------ATVTDIA-IIDRGRNVLSASLD  202 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS-----------------SCEEEEE-EETTTTEEEEEETT
T ss_pred             ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC-----------------CcEEEEE-EcCCCCEEEEEcCC
Confidence            4568999999997777777889999994 34  55553211                 1234455 34455555555556


Q ss_pred             CeEEEEECCCCce
Q 011014          209 QAIREIQLHDDDC  221 (495)
Q Consensus       209 ~rI~~~d~~g~~~  221 (495)
                      +.|+.+++....+
T Consensus       203 ~~v~iwd~~~~~~  215 (420)
T 3vl1_A          203 GTIRLWECGTGTT  215 (420)
T ss_dssp             SCEEEEETTTTEE
T ss_pred             CcEEEeECCCCce
Confidence            7788888766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	495
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	7e-06
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	0.003
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	4e-05
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	2e-04

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.4 bits (106), Expect = 7e-06
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 106 RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTI 165
           R +++     G +G ++G+        P G+AV+ + +I +ADT N  I+     G    
Sbjct: 3   RQRMIYHCKFGEFGVMEGQ-----FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF 57

Query: 166 AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC 199
             G+  +    +  P+  A   N  D++    S 
Sbjct: 58  QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 91

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 83  MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEG-YYGHVDGRPRGARMNHPKGLAVDDR 141
             P  V ++ +GE+L+ D+ NN    L   + +G     ++      +      +A+ D 
Sbjct: 200 NYPIGVGINSNGEILIADNHNNFN--LTIFTQDGQLISALES---KVKHAQCFDVALMDD 254

Query: 142 GNIYIADTMN 151
           G++ +A    
Sbjct: 255 GSVVLASKDY 264

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 5/115 (4%)

Query: 76  FEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG 135
           F G  F + P  VAV  +G + V       R   +A    G             +  P+G
Sbjct: 7   FTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-----GLYQPQG 61

Query: 136 LAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDF 190
           LAVD  G +Y+ D  N  +   + +   T+           +   ++ A +  D 
Sbjct: 62  LAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADR 116

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 127 GARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 161
              +N P  +AVD    +Y+AD  N  + K++   
Sbjct: 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	495
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.78
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.75
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.73
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.73
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.49
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.47
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.42
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.41
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.38
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.35
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.32
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.29
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.23
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.99
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.91
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.42
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.02
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.98
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.83
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.56
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.47
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.47
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.45
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.33
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.22
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.71
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.63
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.6
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.52
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	96.28
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.98
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	95.61
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.44
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.26
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	94.84
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	94.25
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	93.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	92.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	91.4
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	91.28
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	91.19
d1tbga_	340	beta1-subunit of the signal-transducing G protein	90.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	90.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	88.4
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	87.85
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	87.31
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	84.74
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	82.56
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	81.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	80.36

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=7.3e-18  Score=161.47  Aligned_cols=152  Identities=22%  Similarity=0.235  Sum_probs=119.6

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      +..|.+|+++++|+|||+|..++++..+.........      .....+..|.||++|++|+|||+|..+++|.+++.++
T Consensus        97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV------LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE------CCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eeecccccccccceeEeeccccccccccccccceeee------eeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            4689999999999999999998855554332221111      0123578999999999999999999999999999887


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCC--CCcceEEEEec
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD--TFHLGIFVLVA  238 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~--g~P~GIAvd~~  238 (495)
                       ......               ...|..|.+|+ +|++|+|||+|..+++|.+|++++..+......  ..|.||+++. 
T Consensus       171 ~~~~~~~---------------~~~~~~p~gi~-~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~-  233 (260)
T d1rwia_         171 NNQVVLP---------------FTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-  233 (260)
T ss_dssp             CCEEECC---------------CSSCCSEEEEE-ECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECT-
T ss_pred             ceeeeee---------------ccccCCCccce-eeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeC-
Confidence             222211               13467899999 789999999999999999999999877665444  4699999996 


Q ss_pred             CcCeEEEEEccCCceEEEe
Q 011014          239 AAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv~~~~  257 (495)
                       .+++||+|..++||+++.
T Consensus       234 -~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         234 -DRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             -TCCEEEEEGGGTEEEEEC
T ss_pred             -CCCEEEEECCCCEEEEEe
Confidence             568999999999996543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=7.9e-17  Score=154.17  Aligned_cols=194  Identities=24%  Similarity=0.223  Sum_probs=138.2

Q ss_pred             eeeeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCc
Q 011014           37 SNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEG  116 (495)
Q Consensus        37 ~~ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g  116 (495)
                      ..++.+....+|..+.....     .+..+..+.......... ....|.||+++++|+|||+|..+. ++++..++. +
T Consensus        17 ~~vavd~dG~i~v~~~~~~~-----~i~~~~~~~~~~~~~~~~-~~~~p~gvav~~~g~i~v~d~~~~-~i~~~~~~~-~   88 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYG-----RVVKLATGSTGTTVLPFN-GLYQPQGLAVDGAGTVYVTDFNNR-VVTLAAGSN-N   88 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSC-----EEEEEC----CEEECCCC-SCCSCCCEEECTTCCEEEEETTTE-EEEECTTCS-C
T ss_pred             CEEEEcCCCCEEEEEcCCCC-----EEEEEcCCCceEEEeccC-CccCceEEEEcCCCCEEEeeeeec-eeeeeeecc-c
Confidence            45566666778876654432     234444444433333322 245899999999999999999887 555554322 1


Q ss_pred             cccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEE
Q 011014          117 YYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV  195 (495)
Q Consensus       117 ~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v  195 (495)
                      ..-     .....+..|.|||+|.+|+|||+|..++++.+++.++ ...+..               ...+..|.+|+ +
T Consensus        89 ~~~-----~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~---------------~~~~~~p~~i~-~  147 (260)
T d1rwia_          89 QTV-----LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP---------------FTGLNDPDGVA-V  147 (260)
T ss_dssp             CEE-----CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC---------------CCSCCSCCEEE-E
T ss_pred             eee-----eeeeeeeecccccccccceeEeeccccccccccccccceeeeee---------------ecccCCcceee-e
Confidence            111     1123578999999999999999999999999999887 333321               11367899999 6


Q ss_pred             CCCCeEEEEECCCCeEEEEECCCCceeeC--CCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCC
Q 011014          196 GSSCSLLVIDRGNQAIREIQLHDDDCSDN--YDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       196 d~~G~LyVaD~gN~rI~~~d~~g~~~~~~--~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                      +++|+|||+|..+++|.+++.++......  ...+.|.||++|.  .+++||++..++||.++..+..
T Consensus       148 ~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~--~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         148 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE--AGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT--TCCEEEEETTTTEEEEECTTCS
T ss_pred             cCCCCEeeeccccccccccccccceeeeeeccccCCCccceeee--eeeeeeeecCCCEEEEEeCCCC
Confidence            88999999999999999999999776553  4556799999997  5689999999999977654443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=2.5e-16  Score=152.09  Aligned_cols=151  Identities=16%  Similarity=0.244  Sum_probs=118.0

Q ss_pred             CCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCC--ccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc
Q 011014           81 FGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPE--GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS  158 (495)
Q Consensus        81 ~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~--g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d  158 (495)
                      .+..|.+++++++|++|++|..++ .+.++.....  ...+      ....+..|.+|++|++|+|||+|..+++|++|+
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~-~~~~~~~~g~~~~~~g------~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d  184 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVM-RVIIFDQNGNVLHKFG------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN  184 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTT-EEEEECTTSCEEEEEE------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEE
T ss_pred             cccccceeccccCCcEEEEeeccc-eeeEeccCCceeeccc------ccccccccceeeeccceeEEeeeccccceeeee
Confidence            357899999999999999999888 4445543321  1111      124688999999999999999999999999999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC-CCeEEEEECCCCceee---CCCCCCcce
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSD---NYDDTFHLG  232 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g-N~rI~~~d~~g~~~~~---~~~~g~P~G  232 (495)
                      .+|  +.++ +              ..+.+..|.+|+ +|++|+|||+|.. |++|++|+++|+.+.+   ....+.|.+
T Consensus       185 ~~G~~~~~~-g--------------~~g~~~~P~gia-vD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~  248 (279)
T d1q7fa_         185 YEGQYLRQI-G--------------GEGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFD  248 (279)
T ss_dssp             TTCCEEEEE-S--------------CTTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEE
T ss_pred             cCCceeeee-c--------------ccccccCCcccc-cccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeE
Confidence            999  4444 2              123678999999 7999999999985 4589999999987654   334457999


Q ss_pred             EEEEecCcCeEEEEEccCCceEEEe
Q 011014          233 IFVLVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       233 IAvd~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      ||++.  .+.+||++ .++||+.+-
T Consensus       249 vav~~--dG~l~V~~-~n~~v~~fr  270 (279)
T d1q7fa_         249 VALMD--DGSVVLAS-KDYRLYIYR  270 (279)
T ss_dssp             EEEET--TTEEEEEE-TTTEEEEEE
T ss_pred             EEEeC--CCcEEEEe-CCCeEEEEE
Confidence            99997  56899998 589995443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=7.7e-17  Score=155.81  Aligned_cols=161  Identities=17%  Similarity=0.262  Sum_probs=119.5

Q ss_pred             CCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCC--C---ccccc-----------------------------------
Q 011014           81 FGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSP--E---GYYGH-----------------------------------  120 (495)
Q Consensus        81 ~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~--~---g~~G~-----------------------------------  120 (495)
                      .+..|.|||||++|+|||+|..|+++. ++...+  .   +..+.                                   
T Consensus        21 ~f~~P~gvavd~dg~i~VaD~~n~rI~-v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          21 QFTEPSGVAVNAQNDIIVADTNNHRIQ-IFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEE-EECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             eECCccEEEEcCCCCEEEEECCCCEEE-EEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            467899999999999999999999544 332111  0   00000                                   


Q ss_pred             cCCC----cCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEE
Q 011014          121 VDGR----PRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVY  194 (495)
Q Consensus       121 ~dG~----~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~  194 (495)
                      .+|.    .....+..|.++++|++|++||+|..+++|.+++.+|  +.++ +.              ...+..|.+|+ 
T Consensus       100 ~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~-g~--------------~~~~~~~~~i~-  163 (279)
T d1q7fa_         100 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF-GC--------------SKHLEFPNGVV-  163 (279)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE-EC--------------TTTCSSEEEEE-
T ss_pred             ccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecc-cc--------------cccccccceee-
Confidence            0111    0134578899999999999999999999999999998  4444 21              13467899999 


Q ss_pred             ECCCCeEEEEECCCCeEEEEECCCCceeeCCC---CCCcceEEEEecCcCeEEEEEccC-CceEEEeeCCCC
Q 011014          195 VGSSCSLLVIDRGNQAIREIQLHDDDCSDNYD---DTFHLGIFVLVAAAFFGYMLALLQ-RRVQAMFSSKDD  262 (495)
Q Consensus       195 vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~---~g~P~GIAvd~~a~~~~yv~d~~~-~Rv~~~~~s~~~  262 (495)
                      ++++|+|||+|..+++|++++++|........   ...|.|||+|.  .+++||+|..+ +||.  .|+.++
T Consensus       164 ~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~--~G~i~Vad~~~~~~v~--~f~~~G  231 (279)
T d1q7fa_         164 VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINS--NGEILIADNHNNFNLT--IFTQDG  231 (279)
T ss_dssp             ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECT--TCCEEEEECSSSCEEE--EECTTS
T ss_pred             eccceeEEeeeccccceeeeecCCceeeeecccccccCCccccccc--CCeEEEEECCCCcEEE--EECCCC
Confidence            79999999999999999999999988765433   33699999997  66899999765 4673  445444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.49  E-value=1.4e-12  Score=128.35  Aligned_cols=155  Identities=15%  Similarity=0.110  Sum_probs=109.0

Q ss_pred             CCceEEEEcCCCcEEEEECCCC---eeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCC------CE
Q 011014           83 MEPFSVAVSPSGELLVLDSENN---SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN------MA  153 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~---~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N------~r  153 (495)
                      ..|.||++++||+|||++..+.   ..+..+............   .......|.++++|++|+|||+|..+      ..
T Consensus        82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~  158 (319)
T d2dg1a1          82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE---DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  158 (319)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC---SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc---CCCcccCCcceeEEeccceeecccccccccCcce
Confidence            3799999999999999987542   223333322211111111   12346789999999999999999864      35


Q ss_pred             EEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCc--ee------
Q 011014          154 IRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD--CS------  222 (495)
Q Consensus       154 Irk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~--~~------  222 (495)
                      |.+++.+|  +..+..                 .+..|+||+ ++.++ .|||+|..+++|++|+.+...  ..      
T Consensus       159 v~~~~~dg~~~~~~~~-----------------~~~~pnGia-~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~  220 (319)
T d2dg1a1         159 VYYVSPDFRTVTPIIQ-----------------NISVANGIA-LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI  220 (319)
T ss_dssp             EEEECTTSCCEEEEEE-----------------EESSEEEEE-ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             eEEEecccceeEEEee-----------------ccceeeeee-eccccceEEEecccCCceEEEEEcCCCceecccccee
Confidence            88898877  444422                 256799999 56665 699999999999999876532  11      


Q ss_pred             --eCCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          223 --DNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       223 --~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                        .....+.|.|+++|.  .+++||++..+++|.  .++.++
T Consensus       221 ~~~~~~~~~PdGl~vD~--~G~l~Va~~~~g~V~--~~~p~G  258 (319)
T d2dg1a1         221 PYYFTGHEGPDSCCIDS--DDNLYVAMYGQGRVL--VFNKRG  258 (319)
T ss_dssp             EEECCSSSEEEEEEEBT--TCCEEEEEETTTEEE--EECTTS
T ss_pred             eeccCCccceeeeeEcC--CCCEEEEEcCCCEEE--EECCCC
Confidence              133445699999997  778999999999995  455444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.47  E-value=1.8e-12  Score=127.81  Aligned_cols=152  Identities=12%  Similarity=0.073  Sum_probs=105.6

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECC-----------
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-----------  150 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~-----------  150 (495)
                      ..|.||+++++|+ |||+|..+. +.++..........  ........|+.|+++++|++|+|||+|..           
T Consensus        71 g~P~Gl~~~~dg~~l~vad~~~~-i~~~~~~g~~~~~~--~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~  147 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADMRLG-LLVVQTDGTFEEIA--KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTE-EEEEETTSCEEECC--SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             CcceeEEEeCCCCEEEEEECCCe-EEEEeCCCcEEEEE--eccccccccCCCcEEEECCCCCEEEecCccCcccccccce
Confidence            3699999999986 889987643 55554322111110  01112246889999999999999999964           


Q ss_pred             ----CCEEEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCC-C---eEEEEECCCCeEEEEECCCCc-
Q 011014          151 ----NMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS-C---SLLVIDRGNQAIREIQLHDDD-  220 (495)
Q Consensus       151 ----N~rIrk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~-G---~LyVaD~gN~rI~~~d~~g~~-  220 (495)
                          .++|.+++.+| +..+..                 .+..|++|++.... +   .|||+|..+++|++|+++..- 
T Consensus       148 ~~~~~G~v~~~~~dg~~~~~~~-----------------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~  210 (314)
T d1pjxa_         148 MQEKFGSIYCFTTDGQMIQVDT-----------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK  210 (314)
T ss_dssp             TSSSCEEEEEECTTSCEEEEEE-----------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE
T ss_pred             eccCCceEEEEeecCceeEeeC-----------------CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccc
Confidence                34799999888 433322                 25678999854332 1   699999999999999865432 


Q ss_pred             ee------e--CCCCCCcceEEEEecCcCeEEEEEccCCceEEE
Q 011014          221 CS------D--NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       221 ~~------~--~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                      +.      .  ....+.|.||++|.  .+++||++...++|..+
T Consensus       211 ~~~~~~~~~~~~~~~~~pdGiavD~--~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         211 IENKKVWGHIPGTHEGGADGMDFDE--DNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEEEEECCCCSSCEEEEEEEBT--TCCEEEEEETTTEEEEE
T ss_pred             cceeeEEEEccccccccceeeEEec--CCcEEEEEcCCCEEEEE
Confidence            11      1  12344699999997  67899999999999543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-11  Score=119.10  Aligned_cols=150  Identities=13%  Similarity=0.086  Sum_probs=112.9

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCC-CEEEEEc
Q 011014           82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN-MAIRKIS  158 (495)
Q Consensus        82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N-~rIrk~d  158 (495)
                      ...|.|||||. .++||++|..++ .+.++.-.+.....     .....+..|.+|++|+ +|.||++|.+. .+|.+.+
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~-~I~v~~~~g~~~~~-----~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~  149 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLG-TVSVADTKGVKRKT-----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTT-EEEEEETTSSSEEE-----EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCCcceEEEeeccceEEEEecCCC-EEEeEecCCceEEE-----EEcCCCCCcceEEEEcccCeEEEeccCCCcceeEec
Confidence            35799999996 788999999888 44444322111111     1123467899999998 78999999874 5899999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee----CCCCCCcce
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD----NYDDTFHLG  232 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~----~~~~g~P~G  232 (495)
                      .+|  ..++..                ..+..|.+|++...++.||++|..+++|..++++|..+..    ......|.|
T Consensus       150 ~dGs~~~~l~~----------------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~  213 (266)
T d1ijqa1         150 LNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  213 (266)
T ss_dssp             TTSCCEEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEE
T ss_pred             cCCCceecccc----------------cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEE
Confidence            888  455532                1256899999655678999999999999999999977543    222346999


Q ss_pred             EEEEecCcCeEEEEEccCCceEEE
Q 011014          233 IFVLVAAAFFGYMLALLQRRVQAM  256 (495)
Q Consensus       233 IAvd~~a~~~~yv~d~~~~Rv~~~  256 (495)
                      |+++   +..+|++|..+++|.++
T Consensus       214 lav~---~~~ly~td~~~~~I~~~  234 (266)
T d1ijqa1         214 LAVF---EDKVFWTDIINEAIFSA  234 (266)
T ss_dssp             EEEE---TTEEEEEETTTTEEEEE
T ss_pred             EEEE---CCEEEEEECCCCeEEEE
Confidence            9999   57899999999999654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.4e-11  Score=117.34  Aligned_cols=150  Identities=15%  Similarity=0.128  Sum_probs=112.4

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCC--CEEEEEc
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN--MAIRKIS  158 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N--~rIrk~d  158 (495)
                      ..|.+||||. .++||++|...+.+ ..+.-.+....     ......+..|.+|++|+ .|.||++|.+.  .+|.+.+
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I-~~~~~dg~~~~-----~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRI-EVAKMDGTQRR-----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEE-EEEETTSCSCE-----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEE-EEEecCCceEE-----EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence            4799999996 78899999988744 44322211110     01123477899999998 77899999863  4799999


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEE
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFV  235 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAv  235 (495)
                      .+|  ..++..                ..+..|.+|++...++.||++|.+.++|.+++++|..+.. ..+...|.|||+
T Consensus       153 ~dG~~~~~i~~----------------~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav  216 (263)
T d1npea_         153 MDGTNRRILAQ----------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS  216 (263)
T ss_dssp             TTSCCCEEEEC----------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE
T ss_pred             CCCCCceeeee----------------ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEE
Confidence            888  444432                1356899999656778999999999999999999987653 344557999999


Q ss_pred             EecCcCeEEEEEccCCceEEEe
Q 011014          236 LVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       236 d~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      +   +..+|++|..+++|..+-
T Consensus       217 ~---~~~lYwtd~~~~~I~~~~  235 (263)
T d1npea_         217 Y---GKNLYYTDWKTNSVIAMD  235 (263)
T ss_dssp             E---TTEEEEEETTTTEEEEEE
T ss_pred             E---CCEEEEEECCCCEEEEEE
Confidence            9   578999999999995443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.38  E-value=6.4e-12  Score=123.74  Aligned_cols=164  Identities=12%  Similarity=0.076  Sum_probs=112.9

Q ss_pred             CCceEEEEcCCCcEEEEECCC-------CeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEE
Q 011014           83 MEPFSVAVSPSGELLVLDSEN-------NSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAI  154 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n-------~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rI  154 (495)
                      ..|.|+++|++|+|||++...       +++.++-..+.....-  ........-..|.||++|++|+ |||+|. .++|
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~--~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-~~~i   94 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI--CKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL   94 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE--ECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEE--ECCccccCCCcceeEEEeCCCCEEEEEEC-CCeE
Confidence            369999999999999998754       2343443222211110  0111111224699999999987 899996 5789


Q ss_pred             EEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC---------------CeEEEEECCC
Q 011014          155 RKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN---------------QAIREIQLHD  218 (495)
Q Consensus       155 rk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN---------------~rI~~~d~~g  218 (495)
                      ++++.+| ..+++....           ....|+.|++++ ++++|+|||+|...               ++|.+++++|
T Consensus        95 ~~~~~~g~~~~~~~~~~-----------~g~~~~~pndl~-~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg  162 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKDS-----------EGRRMQGCNDCA-FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG  162 (314)
T ss_dssp             EEEETTSCEEECCSBCT-----------TSCBCBCCCEEE-ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS
T ss_pred             EEEeCCCcEEEEEeccc-----------cccccCCCcEEE-ECCCCCEEEecCccCcccccccceeccCCceEEEEeecC
Confidence            9999888 444432111           123588999999 79999999999653               4899999999


Q ss_pred             CceeeCCCCCCcceEEEEecCc---CeEEEEEccCCceEEEeeCCC
Q 011014          219 DDCSDNYDDTFHLGIFVLVAAA---FFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       219 ~~~~~~~~~g~P~GIAvd~~a~---~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                      ...........|.||+++....   ..+||++..+++|..+-...+
T Consensus       163 ~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~  208 (314)
T d1pjxa_         163 QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred             ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCc
Confidence            7766555566799999986332   269999999999976544433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.35  E-value=1.7e-11  Score=120.56  Aligned_cols=158  Identities=12%  Similarity=0.095  Sum_probs=113.2

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECC----CCEEEEEc
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM----NMAIRKIS  158 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~----N~rIrk~d  158 (495)
                      ....|+++|++|+||++|..++++.++-..+.....-.      ......|.||+++++|+||||+..    ..+|..++
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~------~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE------eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            35689999999999999999986666532211111101      012246999999999999999865    45788888


Q ss_pred             CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC------eEEEEECCCCceee-CCCCCC
Q 011014          159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ------AIREIQLHDDDCSD-NYDDTF  229 (495)
Q Consensus       159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~------rI~~~d~~g~~~~~-~~~~g~  229 (495)
                      .++  +..+...              ......|++++ ++.+|+|||+|..+.      .|.++++++..+.. ......
T Consensus       114 ~~~~~~~~~~~~--------------~~~~~~~nd~~-~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~  178 (319)
T d2dg1a1         114 ENGDNLQDIIED--------------LSTAYCIDDMV-FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV  178 (319)
T ss_dssp             TTSCSCEEEECS--------------SSSCCCEEEEE-ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS
T ss_pred             CCCceeeeeccC--------------CCcccCCccee-EEeccceeecccccccccCcceeEEEecccceeEEEeeccce
Confidence            766  4454321              12245788998 799999999997654      49999999876543 345567


Q ss_pred             cceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          230 HLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       230 P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      |.||+++.. +..+|+++..++||.++-...+.
T Consensus       179 pnGia~s~d-g~~lyvad~~~~~I~~~d~~~~g  210 (319)
T d2dg1a1         179 ANGIALSTD-EKVLWVTETTANRLHRIALEDDG  210 (319)
T ss_dssp             EEEEEECTT-SSEEEEEEGGGTEEEEEEECTTS
T ss_pred             eeeeeeccc-cceEEEecccCCceEEEEEcCCC
Confidence            999999862 34699999999999766555443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.32  E-value=1.3e-10  Score=112.49  Aligned_cols=213  Identities=13%  Similarity=0.049  Sum_probs=134.4

Q ss_pred             CCCCcceeece-----eeeeeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCcEEEE
Q 011014           25 STPPAKIVAGI-----VSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVL   99 (495)
Q Consensus        25 ~~~P~~iv~~~-----~~~ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVa   99 (495)
                      ...|.+++..+     +-+++.+....||..+.....      +..+..+........   ....|.+|++++||+|||+
T Consensus        14 ~~~~~~v~~~~p~~~~~e~iAv~pdG~l~vt~~~~~~------I~~i~p~g~~~~~~~---~~~~~~gla~~~dG~l~v~   84 (302)
T d2p4oa1          14 ELAPAKIITSFPVNTFLENLASAPDGTIFVTNHEVGE------IVSITPDGNQQIHAT---VEGKVSGLAFTSNGDLVAT   84 (302)
T ss_dssp             CCCCEEEEEEECTTCCEEEEEECTTSCEEEEETTTTE------EEEECTTCCEEEEEE---CSSEEEEEEECTTSCEEEE
T ss_pred             cCCcccEEEECCCCCCcCCEEECCCCCEEEEeCCCCE------EEEEeCCCCEEEEEc---CCCCcceEEEcCCCCeEEE
Confidence            34455554432     445666666777776665543      233332222222221   1247999999999999999


Q ss_pred             ECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC-cEE-EecCcccCCCCCC
Q 011014          100 DSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTT-IAGGKWSRGVGHV  177 (495)
Q Consensus       100 Ds~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-V~t-iaGg~~G~~~g~~  177 (495)
                      +..++.+..+..-...+.....   ........|.+|++|++|++||+|..+.+|.+++.++ ... +.......     
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----  156 (302)
T d2p4oa1          85 GWNADSIPVVSLVKSDGTVETL---LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA-----  156 (302)
T ss_dssp             EECTTSCEEEEEECTTSCEEEE---EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS-----
T ss_pred             ecCCceEEEEEecccccceeec---cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccc-----
Confidence            9887754443221111111000   0011345689999999999999999999999999665 322 22211111     


Q ss_pred             CCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee----CCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          178 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD----NYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       178 dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~----~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                       .......+..|.+|+. + .+.+|+++..+++|++++.++.....    ....+.|.||++|.  .+++|+++..+++|
T Consensus       157 -~~~~~~~~~~~ngi~~-~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~--dG~l~va~~~~~~V  231 (302)
T d2p4oa1         157 -RSNSESVFPAANGLKR-F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV--EGNLYGATHIYNSV  231 (302)
T ss_dssp             -CSSTTCCSCSEEEEEE-E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT--TCCEEEECBTTCCE
T ss_pred             -eeeccCcccccccccc-c-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECC--CCCEEEEEcCCCcE
Confidence             0112234567888874 3 46899999999999999988754322    22345799999997  66899999999999


Q ss_pred             EEEeeC
Q 011014          254 QAMFSS  259 (495)
Q Consensus       254 ~~~~~s  259 (495)
                      .++..+
T Consensus       232 ~~i~p~  237 (302)
T d2p4oa1         232 VRIAPD  237 (302)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            665433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.7e-11  Score=112.94  Aligned_cols=160  Identities=16%  Similarity=0.095  Sum_probs=115.9

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeeEEEE-cCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEcC
Q 011014           83 MEPFSVAVSP-SGELLVLDSENNSRPKLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISD  159 (495)
Q Consensus        83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~iv-aGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~  159 (495)
                      ..|.+|++|. .+.||++|...+.+.+.. .|.. .. +. ........+..|.|||+|. .++||++|..+++|.+++.
T Consensus        30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~-~~-~~-~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH-GV-SS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCC-CC-cc-eEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            4788999997 567999999888555442 2221 00 00 0011123578899999996 7789999999999999998


Q ss_pred             CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceee--CCCCCCcceEE
Q 011014          160 TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSD--NYDDTFHLGIF  234 (495)
Q Consensus       160 ~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~~g~~~~~--~~~~g~P~GIA  234 (495)
                      +|  ...+..                ..+..|.+|++....|.||++|.+. .+|.+.+++|..+..  ......|.||+
T Consensus       107 ~g~~~~~~~~----------------~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~  170 (266)
T d1ijqa1         107 KGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  170 (266)
T ss_dssp             TSSSEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred             CCceEEEEEc----------------CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEE
Confidence            88  233311                1246899999666799999999865 489999999987654  34456799999


Q ss_pred             EEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          235 VLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      +|.. ...+|++|...++|..+..+..+
T Consensus       171 iD~~-~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         171 LDLL-SGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             EETT-TTEEEEEETTTTEEEEEETTSCS
T ss_pred             eecc-ccEEEEecCCcCEEEEEECCCCC
Confidence            9963 46799999999999777665543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1.7e-10  Score=111.23  Aligned_cols=155  Identities=12%  Similarity=0.054  Sum_probs=115.6

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeeEEEE-cCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEcCC
Q 011014           84 EPFSVAVSP-SGELLVLDSENNSRPKLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISDT  160 (495)
Q Consensus        84 ~P~GIAVd~-dG~LyVaDs~n~~ii~iv-aGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~~  160 (495)
                      .+.||++|. ++.||++|...+.+.++. .|+......       ...+..|.|||+|. .++||++|..+++|.+++.+
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-------~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d  109 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-------EeccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence            467899996 677999999888555543 233211111       12467899999996 77899999999999999988


Q ss_pred             C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC--CeEEEEECCCCceee--CCCCCCcceEE
Q 011014          161 G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN--QAIREIQLHDDDCSD--NYDDTFHLGIF  234 (495)
Q Consensus       161 G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN--~rI~~~d~~g~~~~~--~~~~g~P~GIA  234 (495)
                      |  ..++...                .+..|.+|++.+..|.||++|.+.  .+|.+.+++|.....  ....+.|.|||
T Consensus       110 g~~~~~l~~~----------------~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~gla  173 (263)
T d1npea_         110 GTQRRVLFDT----------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLT  173 (263)
T ss_dssp             SCSCEEEECS----------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEE
T ss_pred             CceEEEEecc----------------cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEE
Confidence            8  4455321                256799999777899999999864  469999999977543  34556799999


Q ss_pred             EEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          235 VLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       235 vd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      +|.. ...+|++|...++|.....+...
T Consensus       174 iD~~-~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         174 FDAF-SSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             EETT-TTEEEEEETTTTEEEEEETTEEE
T ss_pred             Eeec-CcEEEEEeCCCCEEEEEECCCCC
Confidence            9963 45899999999999666555443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.23  E-value=1.5e-10  Score=112.01  Aligned_cols=153  Identities=16%  Similarity=0.061  Sum_probs=110.6

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC---
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD---  159 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~---  159 (495)
                      ..|.+||+++||+|||+|..++++.++-.........        ..-..|.|||++++|+|||++..++.|.+++.   
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~--------~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA--------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE--------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEE--------cCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence            3688999999999999999999665553222111111        12246899999999999999999888887773   


Q ss_pred             CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee------------CCC
Q 011014          160 TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD------------NYD  226 (495)
Q Consensus       160 ~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~------------~~~  226 (495)
                      .+ ...+....               ....|++++ ++.+|++||+|..+.+|+++++.+.....            ...
T Consensus       100 ~~~~~~~~~~~---------------~~~~~n~i~-~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (302)
T d2p4oa1         100 DGTVETLLTLP---------------DAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV  163 (302)
T ss_dssp             TSCEEEEEECT---------------TCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred             ccceeeccccC---------------CccccceeE-EccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCc
Confidence            33 44443211               134688998 79999999999999999999998865321            111


Q ss_pred             CCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          227 DTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       227 ~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      ...+.||+.+   +..+|+++..+++|..+..+...
T Consensus       164 ~~~~ngi~~~---~~~l~~~~~~~~~i~~~~~~~~~  196 (302)
T d2p4oa1         164 FPAANGLKRF---GNFLYVSNTEKMLLLRIPVDSTD  196 (302)
T ss_dssp             SCSEEEEEEE---TTEEEEEETTTTEEEEEEBCTTS
T ss_pred             cccccccccc---CCceeeecCCCCeEEeccccccc
Confidence            1247888887   46899999999999766555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.99  E-value=1.1e-08  Score=99.31  Aligned_cols=150  Identities=12%  Similarity=0.046  Sum_probs=101.1

Q ss_pred             CCCceEEEEcCCCcEEEEECCCC-----e-eEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEE
Q 011014           82 GMEPFSVAVSPSGELLVLDSENN-----S-RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAI  154 (495)
Q Consensus        82 ~~~P~GIAVd~dG~LyVaDs~n~-----~-ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rI  154 (495)
                      ...|.++++|++|+||+++..+.     + +.++-.|..         ......+..|.|++++++++ +||+|+.+++|
T Consensus       102 ~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~---------~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I  172 (295)
T d2ghsa1         102 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV---------TKLFADISIPNSICFSPDGTTGYFVDTKVNRL  172 (295)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE---------EEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             cccceeeEECCCCCEEEEeccccccccceeEeeecCCcE---------EEEeeccCCcceeeecCCCceEEEeeccccee
Confidence            45799999999999999986443     1 111111111         01123467899999999887 99999999999


Q ss_pred             EEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCC-CCcce
Q 011014          155 RKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD-TFHLG  232 (495)
Q Consensus       155 rk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~-g~P~G  232 (495)
                      ++++-+. ...+.+...-    ..+   .......|.+++ +|.+|+|||+..++++|.+|+++|+.+....-+ -.|..
T Consensus       173 ~~~~~d~~~~~~~~~~~~----~~~---~~~~~g~pdG~~-vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~  244 (295)
T d2ghsa1         173 MRVPLDARTGLPTGKAEV----FID---STGIKGGMDGSV-CDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTC  244 (295)
T ss_dssp             EEEEBCTTTCCBSSCCEE----EEE---CTTSSSEEEEEE-ECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEE
T ss_pred             eEeeecccccccccceEE----Eec---cCcccccccceE-EcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEE
Confidence            9997433 0000000000    000   001123688998 799999999999999999999999887654333 35888


Q ss_pred             EEEEecCcCeEEEEEc
Q 011014          233 IFVLVAAAFFGYMLAL  248 (495)
Q Consensus       233 IAvd~~a~~~~yv~d~  248 (495)
                      +|+.......||||..
T Consensus       245 ~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         245 PAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEESTTSCEEEEEEB
T ss_pred             EEEeCCCCCEEEEEEC
Confidence            8887544567999865

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.91  E-value=3.7e-08  Score=95.41  Aligned_cols=153  Identities=9%  Similarity=-0.030  Sum_probs=104.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCC-ccccccCCCcCccccCCcceEEEcCCCCEEEEECCC------CEEEE
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPE-GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN------MAIRK  156 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~-g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N------~rIrk  156 (495)
                      .|.+|+.+++|+|+|+..  +++..+-..+.. .....   .......+.|.++++|++|+|||++..+      ..+.+
T Consensus        60 ~~~~i~~~~dg~l~va~~--~gl~~~d~~tg~~~~l~~---~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          60 MGSALAKISDSKQLIASD--DGLFLRDTATGVLTLHAE---LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             CEEEEEEEETTEEEEEET--TEEEEEETTTCCEEEEEC---SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CcEEEEEecCCCEEEEEe--CccEEeecccceeeEEee---eecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence            688999999999999874  334444322221 11111   0112345678999999999999998643      34555


Q ss_pred             EcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee----------eCCC
Q 011014          157 ISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS----------DNYD  226 (495)
Q Consensus       157 ~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~----------~~~~  226 (495)
                      ++.+.++.+..                 .+..|+++++......+|++|+.+++|++++.+.....          ....
T Consensus       135 ~~~g~~~~~~~-----------------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~  197 (295)
T d2ghsa1         135 VAKGKVTKLFA-----------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI  197 (295)
T ss_dssp             EETTEEEEEEE-----------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             ecCCcEEEEee-----------------ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcc
Confidence            55433444422                 35678999965556679999999999999998754321          1345


Q ss_pred             CCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014          227 DTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD  262 (495)
Q Consensus       227 ~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~  262 (495)
                      .+.|.|+++|.  .+++||+.....+|  ..|+.++
T Consensus       198 ~g~pdG~~vD~--~GnlWva~~~~g~V--~~~dp~G  229 (295)
T d2ghsa1         198 KGGMDGSVCDA--EGHIWNARWGEGAV--DRYDTDG  229 (295)
T ss_dssp             SSEEEEEEECT--TSCEEEEEETTTEE--EEECTTC
T ss_pred             cccccceEEcC--CCCEEeeeeCCCce--EEecCCC
Confidence            56799999997  78999999999999  4455444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.42  E-value=2.8e-06  Score=83.96  Aligned_cols=175  Identities=14%  Similarity=0.003  Sum_probs=104.3

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEE-cCCCCcc-ccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEc
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLV-AGSPEGY-YGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKIS  158 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~iv-aGs~~g~-~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d  158 (495)
                      .+|++++++|||+ |||+|.+.+.+..+. ....... .+....   ...-..|.+|+++++|+ +||+....+.|.+|+
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~---~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA---PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC---SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee---cCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence            4689999999997 999999888443332 2111100 110000   01125899999999998 899999999999888


Q ss_pred             CCC---c--EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCe-----EEEEECCCC--ce----
Q 011014          159 DTG---V--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQA-----IREIQLHDD--DC----  221 (495)
Q Consensus       159 ~~G---V--~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~r-----I~~~d~~g~--~~----  221 (495)
                      .+.   .  ..+.....-.................+..|+ +.++| .|||+.++.+.     |..|+.+..  ..    
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~  300 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA-LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE-ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceE-ECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence            322   2  2221100000000001111223345667788 45555 68999886554     766665432  11    


Q ss_pred             --eeCCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCC
Q 011014          222 --SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       222 --~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                        .+....+.|.+|+++...+.++||++...+.|..+-.+.+
T Consensus       301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence              1133445799999986557789999999999954433333

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=0.00022  Score=65.66  Aligned_cols=150  Identities=11%  Similarity=0.033  Sum_probs=94.6

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEE-Ec-CCCCcc-ccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEE
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKL-VA-GSPEGY-YGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKI  157 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~i-va-Gs~~g~-~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~  157 (495)
                      ..|.+|+++|||+ |||+....+.+..+ +. +..... .+.      ...-..|.+|+++++|+ |||++..+..|..+
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE------EECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee------cccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            3689999999997 88998866634322 22 111111 111      11224699999999998 99999989999888


Q ss_pred             cCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee--------eCCCC
Q 011014          158 SDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS--------DNYDD  227 (495)
Q Consensus       158 d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~--------~~~~~  227 (495)
                      +.+.  .........              .-..|+++++......+++++.....|..++.......        .....
T Consensus       111 ~~~~~~~~~~~~~~~--------------~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g  176 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG  176 (333)
T ss_dssp             EEETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             ccccccceecccccC--------------CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecC
Confidence            7443  211111000              11256777744444468999999999999987664321        12333


Q ss_pred             CCcceEEEEecCcCeEEEEEccCCce
Q 011014          228 TFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       228 g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      ..|..+++... +..+|++.......
T Consensus       177 ~~p~~i~~~~~-~~~~~~~~~~~~~~  201 (333)
T d1ri6a_         177 AGPRHMVFHPN-EQYAYCVNELNSSV  201 (333)
T ss_dssp             CCEEEEEECTT-SSEEEEEETTTTEE
T ss_pred             CCccEEEEecc-ceeEEeeccccCce
Confidence            45889998863 44667777776665

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.98  E-value=2e-05  Score=77.86  Aligned_cols=145  Identities=12%  Similarity=0.028  Sum_probs=94.4

Q ss_pred             CCceEEEE--cCCCc--EEEEEC-CCCeeEEEEc---CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECC----
Q 011014           83 MEPFSVAV--SPSGE--LLVLDS-ENNSRPKLVA---GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM----  150 (495)
Q Consensus        83 ~~P~GIAV--d~dG~--LyVaDs-~n~~ii~iva---Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~----  150 (495)
                      ..|+||.+  +.+|.  |||... .....+.++.   ++.  ..-+ -+......+..|..|++..+|.+|+++.-    
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~--~l~~-~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~  173 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLH-LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFID  173 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEE-EEEECCTTCSSEEEEEEEETTEEEEEESCSCCS
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCC--eEEE-EeecCCccccCccceEEecCCCEEEecCccCcC
Confidence            47999987  45664  788876 2333555442   221  1111 01112346788999999999999999631    


Q ss_pred             -------------CCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 011014          151 -------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH  217 (495)
Q Consensus       151 -------------N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~  217 (495)
                                   ...|..++.+....++.                 .+..|+||++..+...|||+++...+|++|+++
T Consensus       174 ~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-----------------~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         174 PYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-----------------GFDFANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             HHHHHHHHHTTCCCEEEEEECSSCEEEEEE-----------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             hhhhhhhHhhcCCceeEEEEcCCceEEEcC-----------------CCCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence                         23455555544444432                 356899999544455899999999999999998


Q ss_pred             CCcee----eCCCCCCcceEEEEecCcCeEEEEEc
Q 011014          218 DDDCS----DNYDDTFHLGIFVLVAAAFFGYMLAL  248 (495)
Q Consensus       218 g~~~~----~~~~~g~P~GIAvd~~a~~~~yv~d~  248 (495)
                      +....    ...-.+.|.+|.+|.. .+.+|++..
T Consensus       237 ~~~~l~~~~~~~l~~~pDNi~~d~~-~g~lwva~~  270 (340)
T d1v04a_         237 ANWTLTPLRVLSFDTLVDNISVDPV-TGDLWVGCH  270 (340)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEECTT-TCCEEEEEE
T ss_pred             CCcccceEEEecCCCCCCccEEecC-CCEEEEEEC
Confidence            75422    2345678999999852 456777765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.94  E-value=0.0006  Score=61.40  Aligned_cols=170  Identities=15%  Similarity=0.249  Sum_probs=107.1

Q ss_pred             eeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCc-EEEEECCCCeeEEEEc-CCCCc
Q 011014           39 VVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENNSRPKLVA-GSPEG  116 (495)
Q Consensus        39 ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~-LyVaDs~n~~ii~iva-Gs~~g  116 (495)
                      ++.+..+.|..+|..+...+              ... .   .+..|.+|++++||+ |||++..++ .+.++. .+.. 
T Consensus         6 V~~~~~~~v~v~D~~t~~~~--------------~~i-~---~g~~p~~va~spdG~~l~v~~~~~~-~i~v~d~~t~~-   65 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVT--------------ATI-P---VGSNPMGAVISPDGTKVYVANAHSN-DVSIIDTATNN-   65 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEE--------------EEE-E---CSSSEEEEEECTTSSEEEEEEGGGT-EEEEEETTTTE-
T ss_pred             EEECCCCEEEEEECCCCeEE--------------EEE-E---CCCCceEEEEeCCCCEEEEEECCCC-EEEEEECCCCc-
Confidence            34455566777777665433              111 1   124799999999997 889998777 444443 2221 


Q ss_pred             cccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceE
Q 011014          117 YYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDV  192 (495)
Q Consensus       117 ~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gV  192 (495)
                      ......      ....|.+++++++|. ++++...+..+.+++...   +..+..                  ...|..+
T Consensus        66 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~  121 (301)
T d1l0qa2          66 VIATVP------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------------------GKSPLGL  121 (301)
T ss_dssp             EEEEEE------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------------SSSEEEE
T ss_pred             eeeeee------ccccccccccccccccccccccccceeeecccccceeeeeccc------------------cccceEE
Confidence            111101      124689999999887 888888888999998544   333311                  1245666


Q ss_pred             EEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          193 VYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       193 a~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      ++..+...++++...+..+..++.....+.. ......|..+++.. .+..+|++......+
T Consensus       122 ~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  182 (301)
T d1l0qa2         122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSI  182 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEE
T ss_pred             EeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeec-cccceeeeccccccc
Confidence            6433444677888888888888888766543 33444578888775 345677777665555

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.83  E-value=0.00054  Score=61.75  Aligned_cols=103  Identities=16%  Similarity=0.236  Sum_probs=73.1

Q ss_pred             CcceEEEcCCCC-EEEEECCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC
Q 011014          132 HPKGLAVDDRGN-IYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG  207 (495)
Q Consensus       132 ~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~-G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g  207 (495)
                      .|.+|+++++|+ |||++..+++|+++|.. +  +.++..+                  ..|.++++......++++...
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~   94 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG------------------SSPQGVAVSPDGKQVYVTNMA   94 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS------------------SSEEEEEECTTSSEEEEEETT
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc------------------ccccccccccccccccccccc
Confidence            689999999998 89999999999999954 4  4444221                  257788854445568899999


Q ss_pred             CCeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          208 NQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       208 N~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      +..+..++..+..+.. ......|..+++... +..++++......+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~~~~~~~~~~~~~  140 (301)
T d1l0qa2          95 SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD-GKKLYVTNNGDKTV  140 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSEEEEEECTT-SSEEEEEETTTTEE
T ss_pred             cceeeecccccceeeeeccccccceEEEeecC-CCeeeeeeccccce
Confidence            9999999988876543 344456777777642 34555665555444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.56  E-value=0.0013  Score=64.52  Aligned_cols=117  Identities=11%  Similarity=0.110  Sum_probs=74.7

Q ss_pred             CCcceEEE--cCCCC--EEEEEC--CCCEEEEEc--CCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeE
Q 011014          131 NHPKGLAV--DDRGN--IYIADT--MNMAIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSL  201 (495)
Q Consensus       131 ~~P~GIAV--D~dGn--IYVAD~--~N~rIrk~d--~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~L  201 (495)
                      .+|.||.+  +.+|.  |||..-  .+.+|-.|.  .++ ..+..+.-            ....+..|++|++ ..+|.+
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v------------~~~~~~~pNDv~~-~~~g~f  163 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI------------RHKLLPSVNDIVA-VGPEHF  163 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE------------CCTTCSSEEEEEE-EETTEE
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeec------------CCccccCccceEE-ecCCCE
Confidence            46999987  45564  888864  355666555  444 22222211            1235778999995 578899


Q ss_pred             EEEECC---------------CCeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCC
Q 011014          202 LVIDRG---------------NQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD  261 (495)
Q Consensus       202 yVaD~g---------------N~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~  261 (495)
                      |+++..               .....++..+++.+.. ..+..+|.||+++. .+..+||++....||.+.....+
T Consensus       164 y~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~-d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         164 YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTT
T ss_pred             EEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECC-CCCEEEEEeCCCCeEEEEEeCCC
Confidence            999731               1223334444545443 34456899999985 35689999999999976665543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.47  E-value=0.005  Score=61.08  Aligned_cols=185  Identities=9%  Similarity=-0.047  Sum_probs=107.8

Q ss_pred             eeeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCc-EEEEECCCCeeEEEEcCC-CC
Q 011014           38 NVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENNSRPKLVAGS-PE  115 (495)
Q Consensus        38 ~ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs-~~  115 (495)
                      .+.....+.|+.+|..+...+              .....    +..|++|+++|||+ ||++..++  .+.++.-. ..
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~--------------~~~~~----g~~~~~v~fSpDG~~l~~~s~dg--~v~~~d~~t~~   94 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIK--------------TVLDT----GYAVHISRLSASGRYLFVIGRDG--KVNMIDLWMKE   94 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEE--------------EEEEC----SSCEEEEEECTTSCEEEEEETTS--EEEEEETTSSS
T ss_pred             EEEEcCCCEEEEEECCCCcEE--------------EEEeC----CCCeeEEEECCCCCEEEEEcCCC--CEEEEEeeCCC
Confidence            345556667777776665443              11111    23699999999998 67776543  34444321 11


Q ss_pred             ccccccCCCcCccccCCcceEEEc----CCCC-EEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccC
Q 011014          116 GYYGHVDGRPRGARMNHPKGLAVD----DRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFS  187 (495)
Q Consensus       116 g~~G~~dG~~~~a~f~~P~GIAVD----~dGn-IYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~  187 (495)
                      ....     ..-.....|.++++.    +||+ |||+....+.|+.+|...   +.++.+.....     +. .......
T Consensus        95 ~~~~-----~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~-----~~-~~~~~~~  163 (432)
T d1qksa2          95 PTTV-----AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-----DE-QEYHPEP  163 (432)
T ss_dssp             CCEE-----EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-----TT-CCEESCC
T ss_pred             ceEE-----EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc-----cc-eeccCCC
Confidence            0000     000123467788775    4787 789999999999999543   44544321110     00 0001112


Q ss_pred             CCceEEEECCCCeEEEEECCCCeEEEEECCCCce---eeCCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          188 NDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC---SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       188 ~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~---~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      .+..|++......++|+....+.|..++......   ........|.+++++.. +..+|++......+.
T Consensus       164 ~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spd-g~~~~va~~~~~~v~  232 (432)
T d1qksa2         164 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGS-HRYFITAANARNKLV  232 (432)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTT-SCEEEEEEGGGTEEE
T ss_pred             ceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCC-CCEEEEeccccceEE
Confidence            3345553333446788888899999999876443   22333457899999973 456788887777773

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.47  E-value=0.00068  Score=66.25  Aligned_cols=109  Identities=10%  Similarity=0.000  Sum_probs=72.0

Q ss_pred             CCcceEEEcCCCC-EEEEECCCCEEEEEc--CCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEEC
Q 011014          131 NHPKGLAVDDRGN-IYIADTMNMAIRKIS--DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDR  206 (495)
Q Consensus       131 ~~P~GIAVD~dGn-IYVAD~~N~rIrk~d--~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~  206 (495)
                      .+|++|+++++|+ |||+|.+.++|++++  .+|..+..+.....           ..=..|.++++ .+++ .+||+..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-----------~~g~gPr~i~f-~pdg~~~yv~~e  212 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-----------DPGDHPRWVAM-HPTGNYLYALME  212 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-----------STTCCEEEEEE-CTTSSEEEEEET
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec-----------CCCCceEEEEE-CCCCceEEEecc
Confidence            3688999999998 999999999999876  45533322211100           00137899995 5555 6899999


Q ss_pred             CCCeEEEEECCCCcee---e-----CCC-------------CCCcceEEEEecCcCeEEEEEccCCc
Q 011014          207 GNQAIREIQLHDDDCS---D-----NYD-------------DTFHLGIFVLVAAAFFGYMLALLQRR  252 (495)
Q Consensus       207 gN~rI~~~d~~g~~~~---~-----~~~-------------~g~P~GIAvd~~a~~~~yv~d~~~~R  252 (495)
                      ..+.|.+|+.+.....   .     ...             ...+..|++.. .+.++|++......
T Consensus       213 ~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~  278 (365)
T d1jofa_         213 AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKF  278 (365)
T ss_dssp             TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESST
T ss_pred             CCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCC
Confidence            9999999998764311   0     000             01255677764 46689999765443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.45  E-value=0.0021  Score=58.36  Aligned_cols=133  Identities=14%  Similarity=0.076  Sum_probs=87.3

Q ss_pred             EEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcC-CC--cE
Q 011014           88 VAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD-TG--VT  163 (495)
Q Consensus        88 IAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~-~G--V~  163 (495)
                      ++...+|+|+|-|..+..++..+....              .-..|.+|++++||+ |||+...++.|.++|. +|  +.
T Consensus         5 vt~~~d~~v~v~D~~s~~~~~~i~~~~--------------~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~   70 (337)
T d1pbyb_           5 LAPARPDKLVVIDTEKMAVDKVITIAD--------------AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG   70 (337)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECTT--------------CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEEcCCCEEEEEECCCCeEEEEEECCC--------------CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence            344568999999998886666553211              123688999999997 7899999999999994 44  34


Q ss_pred             EEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC-----------CCCeEEEEECCCCceee-CCCCCCcc
Q 011014          164 TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-----------GNQAIREIQLHDDDCSD-NYDDTFHL  231 (495)
Q Consensus       164 tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~-----------gN~rI~~~d~~g~~~~~-~~~~g~P~  231 (495)
                      ++....            .......+.++++.+....+|++..           ...++..++.....+.. ......|.
T Consensus        71 ~~~~~~------------~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  138 (337)
T d1pbyb_          71 RIDLST------------PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT  138 (337)
T ss_dssp             EEECCB------------TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC
T ss_pred             EEecCC------------CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCce
Confidence            442211            1122346778885555556777764           45678888888766543 33445688


Q ss_pred             eEEEEecCcCeEEEEE
Q 011014          232 GIFVLVAAAFFGYMLA  247 (495)
Q Consensus       232 GIAvd~~a~~~~yv~d  247 (495)
                      ++++... +..+|++.
T Consensus       139 ~~~~s~d-g~~l~~~~  153 (337)
T d1pbyb_         139 MLAWARD-GSKLYGLG  153 (337)
T ss_dssp             CEEECTT-SSCEEEES
T ss_pred             EEEEcCC-CCEEEEEc
Confidence            8888753 44566653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.33  E-value=0.0022  Score=64.93  Aligned_cols=166  Identities=13%  Similarity=0.058  Sum_probs=92.9

Q ss_pred             CceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEc-CCCCcc-ccccCCCcC-ccccCCcceEEEcCC----
Q 011014           69 GYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVA-GSPEGY-YGHVDGRPR-GARMNHPKGLAVDDR----  141 (495)
Q Consensus        69 G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~iva-Gs~~g~-~G~~dG~~~-~a~f~~P~GIAVD~d----  141 (495)
                      ++.++....+   +..|++|++.+||+|||++.... .+.++. .+.... ......... ...-..-.|||+|++    
T Consensus        16 ~f~~~~ia~~---L~~P~~la~~pdg~llVter~~G-~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n   91 (450)
T d1crua_          16 NFDKKVILSN---LNKPHALLWGPDNQIWLTERATG-KILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN   91 (450)
T ss_dssp             TSCEEEEECC---CSSEEEEEECTTSCEEEEETTTC-EEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS
T ss_pred             CcEEEEEECC---CCCceEEEEeCCCeEEEEEecCC-EEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccC
Confidence            4555555544   46999999999999999997655 344443 222111 000000000 000112348999974    


Q ss_pred             CCEEEEECC-----------C-CEEEEEc--CCCc-----EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEE
Q 011014          142 GNIYIADTM-----------N-MAIRKIS--DTGV-----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLL  202 (495)
Q Consensus       142 GnIYVAD~~-----------N-~rIrk~d--~~GV-----~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~Ly  202 (495)
                      +.|||+-+.           + ..|+++.  .+..     ..+......  .          .-+.-..|+ ++.+|.||
T Consensus        92 ~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~--~----------~~H~gg~l~-fgpDG~LY  158 (450)
T d1crua_          92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS--S----------KDHQSGRLV-IGPDQKIY  158 (450)
T ss_dssp             CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC--C----------SSCCEEEEE-ECTTSCEE
T ss_pred             CEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccc--c----------cccccccee-EcCCCCEE
Confidence            779997431           1 1344444  2221     112111100  0          012223566 68899999


Q ss_pred             EEECC--------------------------------CCeEEEEECCCCce------------eeCCCCCCcceEEEEec
Q 011014          203 VIDRG--------------------------------NQAIREIQLHDDDC------------SDNYDDTFHLGIFVLVA  238 (495)
Q Consensus       203 VaD~g--------------------------------N~rI~~~d~~g~~~------------~~~~~~g~P~GIAvd~~  238 (495)
                      |+--.                                .+.|.++++++...            .+..+.-.|.|++++. 
T Consensus       159 vs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-  237 (450)
T d1crua_         159 YTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-  237 (450)
T ss_dssp             EEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-
T ss_pred             EEecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecc-
Confidence            98432                                27899999988542            1233444599999996 


Q ss_pred             CcCeEEEEEccCCce
Q 011014          239 AAFFGYMLALLQRRV  253 (495)
Q Consensus       239 a~~~~yv~d~~~~Rv  253 (495)
                       .+.+|+++......
T Consensus       238 -~g~l~~~e~G~~~~  251 (450)
T d1crua_         238 -NGKLLQSEQGPNSD  251 (450)
T ss_dssp             -TSCEEEEEECSSSC
T ss_pred             -cceeeecccccccc
Confidence             56799999875544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.015  Score=52.64  Aligned_cols=162  Identities=14%  Similarity=0.102  Sum_probs=94.9

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEc-
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKIS-  158 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d-  158 (495)
                      ..|.+++++++|+ +++++.... .+.++. .....................|..|++++++. +|+++...+.+.+.+ 
T Consensus       128 ~~~~~v~~s~d~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         128 DGCHSANISPDNRTLWVPALKQD-RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             TTBCCCEECTTSSEEEEEEGGGT-EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             ccceEEEeeecceeeeccccccc-eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence            4688999999887 677776665 333332 11111100000011122346789999999876 677777777766655 


Q ss_pred             -CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce--e---eCCCCCCc
Q 011014          159 -DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC--S---DNYDDTFH  230 (495)
Q Consensus       159 -~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~--~---~~~~~g~P  230 (495)
                       ...  +....-...        .+........|.++++..+...+|++....+.+..+..+....  .   .....+.|
T Consensus       207 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  278 (333)
T d1ri6a_         207 KDPHGNIECVQTLDM--------MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQP  278 (333)
T ss_dssp             SCTTSCCEEEEEEEC--------SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSC
T ss_pred             cccccceeeeeeeee--------eecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCe
Confidence             222  221111000        0111223456777774444446889999888888877665432  1   23344579


Q ss_pred             ceEEEEecCcCeEEEEEccCCceE
Q 011014          231 LGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       231 ~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      .++++.. .+..+||+....+.|.
T Consensus       279 ~~~a~sp-DGk~l~va~~~~~~v~  301 (333)
T d1ri6a_         279 RGFNVDH-SGKYLIAAGQKSHHIS  301 (333)
T ss_dssp             CCEEECT-TSSEEEEECTTTCEEE
T ss_pred             eEEEEeC-CCCEEEEEECCCCeEE
Confidence            9999986 3557899988888884

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.71  E-value=0.093  Score=50.59  Aligned_cols=183  Identities=10%  Similarity=-0.014  Sum_probs=104.9

Q ss_pred             eeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCc-EEEEECCCCeeEEEEcC-CCCc
Q 011014           39 VVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENNSRPKLVAG-SPEG  116 (495)
Q Consensus        39 ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaG-s~~g  116 (495)
                      +.....+.|..+|..+...+              .+...    +..|.+|+++|||. ||++..++  .++++.- +...
T Consensus        36 V~~~~dg~v~vwD~~t~~~~--------------~~l~~----g~~~~~vafSPDGk~l~~~~~d~--~v~vwd~~t~~~   95 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIV--------------KVIDT----GYAVHISRMSASGRYLLVIGRDA--RIDMIDLWAKEP   95 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEE--------------EEEEC----CSSEEEEEECTTSCEEEEEETTS--EEEEEETTSSSC
T ss_pred             EEEcCCCEEEEEECCCCcEE--------------EEEeC----CCCeeEEEECCCCCEEEEEeCCC--CEEEEEccCCce
Confidence            44455677777777765433              11111    23699999999998 56666543  3444432 2111


Q ss_pred             cccccCCCcCccccCCcceEEEc----CCCC-EEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCccc-C
Q 011014          117 YYGHVDGRPRGARMNHPKGLAVD----DRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKF-S  187 (495)
Q Consensus       117 ~~G~~dG~~~~a~f~~P~GIAVD----~dGn-IYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f-~  187 (495)
                      ..-     ..-.....|.+++++    +||+ |||+...++.|+.+|...   +.++.+.....     ..  ..... .
T Consensus        96 ~~~-----~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~--~~~~~~~  163 (426)
T d1hzua2          96 TKV-----AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-----DT--QTYHPEP  163 (426)
T ss_dssp             EEE-----EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-----SS--CCEESCC
T ss_pred             eEE-----EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCc-----cc--eeecCCC
Confidence            000     000112356777776    4787 789988899999999544   34443322110     00  00000 1


Q ss_pred             CCceEEEECCCCeEEEEECCCCeEEEEECCCCce---eeCCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          188 NDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC---SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       188 ~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~---~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      .+..++.......+++++.+.+.|..+.......   ........|.+++++. .+..+|++....+.+.
T Consensus       164 ~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~  232 (426)
T d1hzua2         164 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS-SHRYFMTAANNSNKVA  232 (426)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT-TSCEEEEEETTCSEEE
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC-CCcEEEeeeeccccee
Confidence            2234554455557788899999998887665432   2233444689999986 3456788877777774

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.63  E-value=0.0074  Score=54.80  Aligned_cols=75  Identities=7%  Similarity=-0.018  Sum_probs=50.6

Q ss_pred             CcceEEEcCCCC-EEEEECCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEEC
Q 011014          132 HPKGLAVDDRGN-IYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDR  206 (495)
Q Consensus       132 ~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~-G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~  206 (495)
                      .|.+|++++||. |||++..+++|.++|.. +  +.++....           ........|.++++ ..+| .|||++.
T Consensus        41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~-----------~~~~~~~~~~~v~~-s~DG~~l~v~~~  108 (346)
T d1jmxb_          41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS-----------VPGEVGRSMYSFAI-SPDGKEVYATVN  108 (346)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC-----------STTEEEECSSCEEE-CTTSSEEEEEEE
T ss_pred             CcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc-----------cccccCCceEEEEE-ecCCCEEEEEec
Confidence            588999999997 89999999999999944 4  33442211           11123456888985 5554 6888864


Q ss_pred             -----------CCCeEEEEECCC
Q 011014          207 -----------GNQAIREIQLHD  218 (495)
Q Consensus       207 -----------gN~rI~~~d~~g  218 (495)
                                 ....|..++...
T Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~  131 (346)
T d1jmxb_         109 PTQRLNDHYVVKPPRLEVFSTAD  131 (346)
T ss_dssp             EEEECSSCEEECCCEEEEEEGGG
T ss_pred             CCcceeeeeccCcceEEEEeccc
Confidence                       355666666554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.60  E-value=0.054  Score=48.49  Aligned_cols=116  Identities=12%  Similarity=0.130  Sum_probs=64.6

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeeEEEEc-CCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEEC---------
Q 011014           82 GMEPFSVAVSPSGE-LLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT---------  149 (495)
Q Consensus        82 ~~~P~GIAVd~dG~-LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~---------  149 (495)
                      +..|.+|++++||+ |||+...++ .+.++. .+..-. ..............|.+++++++|+ +|++..         
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~-~v~v~D~~t~~~~-~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSE-SLVKIDLVTGETL-GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTT-EEEEEETTTCCEE-EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCCccEEEECCCCCEEEEEECCCC-eEEEEECCCCcEE-EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec
Confidence            34699999999997 678887776 444443 222110 0001111122345788999999887 777654         


Q ss_pred             --CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCce
Q 011014          150 --MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDC  221 (495)
Q Consensus       150 --~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~~  221 (495)
                        ...++..++...   +.++..                  -..|.+++ +.++| .+|+++   +.+..++.....+
T Consensus       111 ~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~-~s~dg~~l~~~~---~~~~~~d~~~~~~  166 (337)
T d1pbyb_         111 EVQPTRVALYDAETLSRRKAFEA------------------PRQITMLA-WARDGSKLYGLG---RDLHVMDPEAGTL  166 (337)
T ss_dssp             EECCCEEEEEETTTTEEEEEEEC------------------CSSCCCEE-ECTTSSCEEEES---SSEEEEETTTTEE
T ss_pred             cccccceeeccccCCeEEEeccc------------------cCCceEEE-EcCCCCEEEEEc---CCcceeeeecCcE
Confidence              245666666433   222211                  12467777 45555 456654   3355666555443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.52  E-value=0.084  Score=53.18  Aligned_cols=69  Identities=9%  Similarity=-0.015  Sum_probs=50.8

Q ss_pred             CCCceEEEECCCC-eEEEEECCCCeEEEEECCCC-----------ce-eeCCCCCC-cceEEEEecCcCeEEEEEccCCc
Q 011014          187 SNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDD-----------DC-SDNYDDTF-HLGIFVLVAAAFFGYMLALLQRR  252 (495)
Q Consensus       187 ~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~-----------~~-~~~~~~g~-P~GIAvd~~a~~~~yv~d~~~~R  252 (495)
                      ..|+||. ++++| .|||+....+.|.+|+.+.-           .| ....+.|+ |...++|.  .++.|.+.++.+.
T Consensus       258 ksPhGv~-vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~--~g~~yts~~~ds~  334 (441)
T d1qnia2         258 KNPHGLN-TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG--RGNAYTTLFIDSQ  334 (441)
T ss_dssp             SSCCCEE-ECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS--SSEEEEEETTTTE
T ss_pred             CCccCce-ECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC--CceEEEcccccce
Confidence            4799999 45555 58999999999999996441           12 22445554 77788886  6789999999998


Q ss_pred             eEEEee
Q 011014          253 VQAMFS  258 (495)
Q Consensus       253 v~~~~~  258 (495)
                      |.+-..
T Consensus       335 v~kw~~  340 (441)
T d1qnia2         335 VCKWNI  340 (441)
T ss_dssp             EEEEEH
T ss_pred             EEEecc
Confidence            865443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=96.28  E-value=0.41  Score=43.82  Aligned_cols=117  Identities=8%  Similarity=-0.056  Sum_probs=63.7

Q ss_pred             EEEEcCCCc-EEEEECCCC--------eeEEEEcCCC---CccccccCCCcCccccCCcceEEEcCCCC-EEEEECC-CC
Q 011014           87 SVAVSPSGE-LLVLDSENN--------SRPKLVAGSP---EGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM-NM  152 (495)
Q Consensus        87 GIAVd~dG~-LyVaDs~n~--------~ii~ivaGs~---~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~-N~  152 (495)
                      +++++|||. ||++.....        ..+.++....   ...... ...........|.++++.++|. +||+... .+
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEec-CCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence            789999987 677654322        2344443211   111100 1111122355788899988876 5666533 44


Q ss_pred             EEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 011014          153 AIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       153 rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                      .+..++.......                  .....|.++++......+|++....+.+..++..+..+.
T Consensus       149 ~~~~~~~~~~~~~------------------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         149 AVGLVVQGGSSDD------------------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             ceEEeeccCCeEE------------------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence            5555554331111                  122345666644444567888888888888887776553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.98  E-value=0.018  Score=51.99  Aligned_cols=96  Identities=8%  Similarity=-0.042  Sum_probs=66.0

Q ss_pred             eEEEcCCCCEEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCe
Q 011014          135 GLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQA  210 (495)
Q Consensus       135 GIAVD~dGnIYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~r  210 (495)
                      |+|+.++|+.+|+=...+.|.++|.+.   +.++....                -..|.+|+ +.++| .|||++..+++
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~----------------~~~p~~l~-~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD----------------KFGPGTAM-MAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS----------------CCSSCEEE-ECTTSSEEEEEETTTTE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC----------------CCCcceEE-ECCCCCEEEEEECCCCc
Confidence            567888888777766778999999543   44442110                02578898 46665 68999999999


Q ss_pred             EEEEECCCCceee----CCCC----CCcceEEEEecCcCeEEEEEc
Q 011014          211 IREIQLHDDDCSD----NYDD----TFHLGIFVLVAAAFFGYMLAL  248 (495)
Q Consensus       211 I~~~d~~g~~~~~----~~~~----g~P~GIAvd~~a~~~~yv~d~  248 (495)
                      |..+++.......    ....    ..|.++++... +..+|++..
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~D-G~~l~v~~~  108 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVN  108 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEE
T ss_pred             EEEEeCccCeeeeeecccccccccCCceEEEEEecC-CCEEEEEec
Confidence            9999998876542    1111    14889998763 456788764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.61  E-value=0.53  Score=42.45  Aligned_cols=180  Identities=9%  Similarity=-0.060  Sum_probs=94.0

Q ss_pred             ccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCc-EEEEECCC--------CeeEEEEcCC
Q 011014           43 LVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSEN--------NSRPKLVAGS  113 (495)
Q Consensus        43 ~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~-LyVaDs~n--------~~ii~ivaGs  113 (495)
                      ....+|.+|..+...+     ..+.         .    +..| ++++++||. |||++...        ...+.++...
T Consensus        26 ~~~~v~v~D~~tg~~~-----~~~~---------~----g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~   86 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVI-----GMID---------G----GFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV   86 (355)
T ss_dssp             SSEEEEEEETTTTEEE-----EEEE---------E----CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CcCeEEEEECCCCcEE-----EEEE---------C----CCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence            3467888888776443     1111         1    1234 799999997 88876421        1245555432


Q ss_pred             C---CccccccCCCcCccccCCcceEEEcCCCC-EEEEECC-CCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcc
Q 011014          114 P---EGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM-NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAK  185 (495)
Q Consensus       114 ~---~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~-N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~  185 (495)
                      .   ......... ........|.+++++++|+ +||++.. ...+..++...   +.++......          ....
T Consensus        87 t~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~  155 (355)
T d2bbkh_          87 TLLPTADIELPDA-PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY----------HIFP  155 (355)
T ss_dssp             TCCEEEEEEETTC-CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE----------EEEE
T ss_pred             CCCEEEEEecCCc-ceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc----------eEee
Confidence            1   111100011 1112346799999999887 8888865 45677777443   4444321110          0001


Q ss_pred             cCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCCC------CcceEEEEecCcCeEEEEEccCCce
Q 011014          186 FSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDT------FHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       186 f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~g------~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      ...+..+++......+++.......+..++.............      .+..++. ....+.+|+.+....++
T Consensus       156 ~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA  228 (355)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred             cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEE-ecCCCeEEEEecCCCcE
Confidence            1233445544555567777777788888776654332111110      1222332 23455677777766665

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.44  E-value=0.062  Score=53.89  Aligned_cols=112  Identities=13%  Similarity=0.097  Sum_probs=65.4

Q ss_pred             ccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECC----CCeEE
Q 011014          129 RMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS----SCSLL  202 (495)
Q Consensus       129 ~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~----~G~Ly  202 (495)
                      .|.+|++|++.++|+|||++...++|++++. ++ ++++.+.....  ....+   +   ..-.+|+ +++    ++.||
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~--~~~~g---e---~GLLgia-~~Pdf~~n~~iY   95 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV--NDADG---Q---NGLLGFA-FHPDFKNNPYIY   95 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC--CCTTS---S---CSEEEEE-ECTTTTTSCEEE
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccc--cccCC---C---CceeeEE-eCCCCccCCEEE
Confidence            4889999999999999999998899999994 44 55555432110  00000   0   1224677 443    58899


Q ss_pred             EEEC------------CCCeEEEEECCCCcee---------eCCCCC--CcceEEEEecCcCeEEEEEccCC
Q 011014          203 VIDR------------GNQAIREIQLHDDDCS---------DNYDDT--FHLGIFVLVAAAFFGYMLALLQR  251 (495)
Q Consensus       203 VaD~------------gN~rI~~~d~~g~~~~---------~~~~~g--~P~GIAvd~~a~~~~yv~d~~~~  251 (495)
                      |+-.            ....|+++..+.....         .....+  .-..|+++.  .+.+|++-....
T Consensus        96 vsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp--DG~LYvs~Gd~~  165 (450)
T d1crua_          96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP--DQKIYYTIGDQG  165 (450)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT--TSCEEEEECCTT
T ss_pred             EEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC--CCCEEEEecCCC
Confidence            9642            1123555554443211         111222  234566654  667888876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.26  E-value=0.32  Score=47.42  Aligned_cols=99  Identities=10%  Similarity=0.034  Sum_probs=63.9

Q ss_pred             EEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCC-C----
Q 011014           88 VAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-G----  161 (495)
Q Consensus        88 IAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~-G----  161 (495)
                      |++..+|.|.|-|.....++..+..          |       ..|.+|++++||+ ||++.. .+.|+++|-+ +    
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~~----------g-------~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~   97 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLDT----------G-------YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTT   97 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEEC----------S-------SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCE
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeC----------C-------CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceE
Confidence            4555667777777666655554421          1       1488999999998 888865 5689999832 2    


Q ss_pred             cEEEecCcccCCCCCCCCCCcCcccCCCceEEEE---CCCC-eEEEEECCCCeEEEEECCCCcee
Q 011014          162 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSC-SLLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       162 V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v---d~~G-~LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                      +..+.-                  ...|.+++..   ..+| .|||+....+.|+.++..+..+.
T Consensus        98 ~~~i~~------------------~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~  144 (432)
T d1qksa2          98 VAEIKI------------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK  144 (432)
T ss_dssp             EEEEEC------------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             EEEEec------------------CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccce
Confidence            223321                  1234455421   2355 57899999999999998886653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=94.84  E-value=1.4  Score=40.03  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=40.6

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCC
Q 011014           83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT  160 (495)
Q Consensus        83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~  160 (495)
                      ..|.++++.++|. ++|........+.+.......         .......|.++++.++|. +||+...++.+.+++..
T Consensus       125 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~  195 (373)
T d2madh_         125 PYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS---------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA  195 (373)
T ss_pred             cCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe---------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence            4678888888776 566554333233333221100         112345677888887775 77787777777777743

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.25  E-value=0.27  Score=49.34  Aligned_cols=144  Identities=15%  Similarity=0.045  Sum_probs=85.1

Q ss_pred             CCcEEEEECCCCeeEEEEc-CCCCcccccc-----------CCCcCccccCCcceEEEc--CCCC-EEEEECCCCEEEEE
Q 011014           93 SGELLVLDSENNSRPKLVA-GSPEGYYGHV-----------DGRPRGARMNHPKGLAVD--DRGN-IYIADTMNMAIRKI  157 (495)
Q Consensus        93 dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~-----------dG~~~~a~f~~P~GIAVD--~dGn-IYVAD~~N~rIrk~  157 (495)
                      +|+|.|-|-...+.++.+. -++.+..|+.           +.........+|....++  +||+ |||+|..|+||.+|
T Consensus        20 sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavI   99 (441)
T d1qnia2          20 QGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARI   99 (441)
T ss_dssp             TCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEE
T ss_pred             CCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEE
Confidence            6888888877666666542 1221111110           001112234568776665  5786 99999999999999


Q ss_pred             cCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeE------------------EEEEC
Q 011014          158 SDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAI------------------REIQL  216 (495)
Q Consensus       158 d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI------------------~~~d~  216 (495)
                      |.+.  ...+.--.               ....|+++++ .++| .+||+....+.+                  ..++.
T Consensus       100 Dl~t~k~~~ii~iP---------------~g~gphgi~~-spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2         100 RLDIMKTDKITHIP---------------NVQAIHGLRL-QKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             ETTTTEEEEEEECT---------------TCCCEEEEEE-CCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             ECCCCcEeeEEecC---------------CCCCccceEE-eccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence            9654  22221111               1246888884 5444 568887665555                  45676


Q ss_pred             CCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          217 HDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       217 ~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      ....+.. ..-.+.|.++++.. .+..+|+++.....+
T Consensus       164 ~t~~v~~qI~v~~~p~~v~~sp-dGk~a~vt~~nse~~  200 (441)
T d1qnia2         164 ETMDVAWQVIVDGNLDNTDADY-TGKYATSTCYNSERA  200 (441)
T ss_dssp             TTCSEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCC
T ss_pred             ccceeeEEEecCCCccceEECC-CCCEEEEEecCCCce
Confidence            6655432 22234688888886 345788887765554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.57  E-value=0.56  Score=43.56  Aligned_cols=102  Identities=13%  Similarity=-0.005  Sum_probs=65.0

Q ss_pred             CcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECC---------CCEEEEEcCCC--
Q 011014           94 GELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM---------NMAIRKISDTG--  161 (495)
Q Consensus        94 G~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~---------N~rIrk~d~~G--  161 (495)
                      ++|||.|......+..+.+.                + .| ++++.+||. |||+...         .+.|+++|...  
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~----------------~-~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~  107 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGA----------------F-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEEC----------------T-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             ceEEEEeCCCCcEEEEEeCC----------------C-CC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc
Confidence            45888887776554443211                1 23 789999997 8988742         35699999654  


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD  223 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~  223 (495)
                       +..+... .+         ........|.++++.++...|||++...+.|+.+++.+..+..
T Consensus       108 ~~~~i~~p-~~---------~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_         108 PIADIELP-DA---------PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             EEEEEEET-TS---------CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             EeeeecCC-cc---------ceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE
Confidence             3333211 00         0011234688898544444799999988999999998877653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.89  E-value=1.3  Score=40.96  Aligned_cols=66  Identities=8%  Similarity=-0.046  Sum_probs=44.7

Q ss_pred             CceEEEECCCCeEEEEECC--------CCeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014          189 DFDVVYVGSSCSLLVIDRG--------NQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ  254 (495)
Q Consensus       189 P~gVa~vd~~G~LyVaD~g--------N~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~  254 (495)
                      +..+++....+.+||+...        ..+|++++..+..+.. ....+.|.++++...+...+|++....+.|.
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~  340 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD  340 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEE
Confidence            4456766667788887532        2469999988766543 2223358888888654456899988777773

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.40  E-value=3.5  Score=38.81  Aligned_cols=72  Identities=8%  Similarity=-0.122  Sum_probs=46.3

Q ss_pred             CcceEEEcCCCC-EEEEECCCCEEEEEcCC-C-c---EEEecCcccCCCCCCCCCCcCcccCCCceEEEE---CCCC-eE
Q 011014          132 HPKGLAVDDRGN-IYIADTMNMAIRKISDT-G-V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSC-SL  201 (495)
Q Consensus       132 ~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~-G-V---~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v---d~~G-~L  201 (495)
                      .|.+|++++||+ ||++.. .+.|+++|-+ + .   ..+..                  ...|.++++.   ..+| .|
T Consensus        63 ~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~~i~~------------------~~~~~~~~~s~~~spDG~~l  123 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEIKI------------------GIEARSVESSKFKGYEDRYT  123 (426)
T ss_dssp             SEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEEEC------------------CSEEEEEEECCSTTCTTTEE
T ss_pred             CeeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEEEEEeC------------------CCCCcceEEeeeecCCCCEE
Confidence            588999999998 777765 5689999843 3 1   22211                  1133444421   1234 57


Q ss_pred             EEEECCCCeEEEEECCCCcee
Q 011014          202 LVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       202 yVaD~gN~rI~~~d~~g~~~~  222 (495)
                      |++...++.|+.++.....+.
T Consensus       124 ~v~~~~~~~v~i~d~~~~~~~  144 (426)
T d1hzua2         124 IAGAYWPPQFAIMDGETLEPK  144 (426)
T ss_dssp             EEEEEESSEEEEEETTTCCEE
T ss_pred             EEeecCCCeEEEEcCCcccee
Confidence            788888888888888776653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.28  E-value=1.3  Score=39.47  Aligned_cols=99  Identities=10%  Similarity=0.086  Sum_probs=59.4

Q ss_pred             EEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EE-EEECCCCEEEEEcCCC--cE
Q 011014           88 VAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IY-IADTMNMAIRKISDTG--VT  163 (495)
Q Consensus        88 IAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IY-VAD~~N~rIrk~d~~G--V~  163 (495)
                      ||+..+|+|||.|.....++++         ++         -.....+++.+||+ |+ +++...+.|++++.++  +.
T Consensus        18 ~a~~~~g~v~v~d~~~~~~~~~---------~~---------~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3          18 IAFVSRGQAFIQDVSGTYVLKV---------PE---------PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             EEEEETTEEEEECTTSSBEEEC---------SC---------CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EEEEECCeEEEEECCCCcEEEc---------cC---------CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence            3444467777777655433332         11         11356899999997 33 3454445788888554  33


Q ss_pred             EEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 011014          164 TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       164 tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                      .+.+.                 -.....++ ..++|..+++-...+.|+.++.++..+.
T Consensus        80 ~~~~~-----------------~~~v~~~~-~spdg~~l~~~~~~~~~~~~~~~~~~~~  120 (360)
T d1k32a3          80 KFEEN-----------------LGNVFAMG-VDRNGKFAVVANDRFEIMTVDLETGKPT  120 (360)
T ss_dssp             ECCCC-----------------CCSEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EeeCC-----------------CceEEeee-ecccccccceecccccccccccccccee
Confidence            33211                 11234566 5777777777777788888888886654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.19  E-value=4.5  Score=35.54  Aligned_cols=72  Identities=8%  Similarity=0.026  Sum_probs=44.6

Q ss_pred             CceEEEEcCCCcEEE-EECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014           84 EPFSVAVSPSGELLV-LDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG  161 (495)
Q Consensus        84 ~P~GIAVd~dG~LyV-aDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G  161 (495)
                      ...+++++|||+.++ +...+...+.+..... +....     ....-.....++++++|+.+++-...+.|+.++.++
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-~~~~~-----~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-GKAEK-----FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTT-CCEEE-----CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCC-CcEEE-----eeCCCceEEeeeecccccccceeccccccccccccc
Confidence            567899999997544 4333333555554221 11100     011223456899999999888888888999998655

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.96  E-value=4.5  Score=35.06  Aligned_cols=103  Identities=11%  Similarity=-0.016  Sum_probs=60.4

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014          133 PKGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ  209 (495)
Q Consensus       133 P~GIAVD~dGnIYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~  209 (495)
                      ...|+++++|+++++=..++.|+.++...   +.++....               ....-..++ ..+++.++++-..++
T Consensus       229 i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~---------------~~~~i~~~~-~s~~~~~l~~g~~dg  292 (340)
T d1tbga_         229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN---------------IICGITSVS-FSKSGRLLLAGYDDF  292 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT---------------CCSCEEEEE-ECSSSCEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc---------------ccCceEEEE-ECCCCCEEEEEECCC
Confidence            45889999999877766788899998544   23331110               011223455 567777777766778


Q ss_pred             eEEEEECCCCceee-CCC-CCCcceEEEEecCcCeEEEEEccCCce
Q 011014          210 AIREIQLHDDDCSD-NYD-DTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       210 rI~~~d~~g~~~~~-~~~-~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .|+.++.....+.. ..+ .+.-..|++..  .+...++....+.|
T Consensus       293 ~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~--d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         293 NCNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL  336 (340)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSCEEEEETTSCE
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEeC--CCCEEEEEccCCEE
Confidence            89999877655432 222 22235566653  33334455555555

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.00  E-value=1.5  Score=38.28  Aligned_cols=25  Identities=8%  Similarity=0.190  Sum_probs=16.6

Q ss_pred             ceEEEcCCCCEEEEECCCCEEEEEc
Q 011014          134 KGLAVDDRGNIYIADTMNMAIRKIS  158 (495)
Q Consensus       134 ~GIAVD~dGnIYVAD~~N~rIrk~d  158 (495)
                      ..++++++|+++++=..++.|+++|
T Consensus       274 ~~~~~s~~~~~l~~g~~dg~i~iwd  298 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEE
Confidence            4667777777666655566677777

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.40  E-value=8.1  Score=34.40  Aligned_cols=145  Identities=11%  Similarity=-0.003  Sum_probs=77.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCcc---ccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014           84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGY---YGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT  160 (495)
Q Consensus        84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~---~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~  160 (495)
                      .-..|+++++|.++++-. + +.+++..-.....   ......   ...-..-..|++.++|+++++=..++.|+.++..
T Consensus        53 ~V~~v~fs~~g~~latg~-d-g~V~iWd~~~~~~~~~~~~~~~---~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDC---LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEEC---SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             cEEEEEECCCCCEEEEEE-C-CEEEEEEccCCcccceeEEeee---cCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            357899999999888865 3 3567664211000   000000   0000112479999999977766668899999843


Q ss_pred             C-----cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC--CCCCCcceE
Q 011014          161 G-----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YDDTFHLGI  233 (495)
Q Consensus       161 G-----V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~--~~~g~P~GI  233 (495)
                      .     ...+.+..                 ..-..++ ..+++.++++-..+..|+.++.....+...  ...+.-..+
T Consensus       128 ~~~~~~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l  189 (337)
T d1gxra_         128 APTPRIKAELTSSA-----------------PACYALA-ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI  189 (337)
T ss_dssp             CC--EEEEEEECSS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             cccccccccccccc-----------------ccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            3     12221100                 0112333 466666666666677888888777665432  222223445


Q ss_pred             EEEecCcCeEEEEEccCCce
Q 011014          234 FVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       234 Avd~~a~~~~yv~d~~~~Rv  253 (495)
                      ++..  .....++......+
T Consensus       190 ~~s~--~~~~~~~~~~d~~v  207 (337)
T d1gxra_         190 DISN--DGTKLWTGGLDNTV  207 (337)
T ss_dssp             EECT--TSSEEEEEETTSEE
T ss_pred             cccc--cccccccccccccc
Confidence            5443  33334444444555

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.85  E-value=7.7  Score=34.20  Aligned_cols=45  Identities=9%  Similarity=-0.068  Sum_probs=28.5

Q ss_pred             CeEEEEECCCCce-eeCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014          209 QAIREIQLHDDDC-SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       209 ~rI~~~d~~g~~~-~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      +.|..+++..... ......+.|.++++...+...+|++....+.|
T Consensus       280 ~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i  325 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL  325 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             CeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEE
Confidence            5688888775443 23323345788888764444577777777777

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.31  E-value=5.3  Score=34.53  Aligned_cols=145  Identities=9%  Similarity=0.006  Sum_probs=80.5

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-C
Q 011014           83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-G  161 (495)
Q Consensus        83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G  161 (495)
                      ..+.++++.++|.++++...+.  +.+..... ....        ..-.....+++.++++++++=..++.|+.++-. +
T Consensus       100 ~~~~~~~~s~~g~~~~~~~~~~--i~~~~~~~-~~~~--------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~  168 (299)
T d1nr0a2         100 SQPLGLAVSADGDIAVAACYKH--IAIYSHGK-LTEV--------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA  168 (299)
T ss_dssp             SCEEEEEECTTSSCEEEEESSE--EEEEETTE-EEEE--------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT
T ss_pred             cccccccccccccccccccccc--cccccccc-cccc--------ccccccccccccccccccccccccccccccccccc
Confidence            4677889988888777765543  33332111 0000        011235678999999877776678899999843 3


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-C-CCCC---CcceEEE
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-N-YDDT---FHLGIFV  235 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~-~~~g---~P~GIAv  235 (495)
                       +..+.....               -.....++ ..+++..+++-..++.|+.++........ . ...+   .-..+++
T Consensus       169 ~~~~~~~~~~---------------~~~i~~~~-~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  232 (299)
T d1nr0a2         169 SVSEVKTIVH---------------PAEITSVA-FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW  232 (299)
T ss_dssp             EEEEEEEEEC---------------SSCEEEEE-ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred             cccccccccc---------------cccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence             222211000               01234566 56677766666667889999977654332 1 1111   2345565


Q ss_pred             EecCcCeEEEEEccCCceEEEe
Q 011014          236 LVAAAFFGYMLALLQRRVQAMF  257 (495)
Q Consensus       236 d~~a~~~~yv~d~~~~Rv~~~~  257 (495)
                      ..  .+...++....+.| .++
T Consensus       233 s~--~~~~l~sgs~dg~i-~iw  251 (299)
T d1nr0a2         233 SP--DNVRLATGSLDNSV-IVW  251 (299)
T ss_dssp             CT--TSSEEEEEETTSCE-EEE
T ss_pred             cc--cccceEEEcCCCEE-EEE
Confidence            54  34445555555666 344

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=84.74  E-value=2.7  Score=40.47  Aligned_cols=75  Identities=25%  Similarity=0.324  Sum_probs=52.2

Q ss_pred             CcceEEEcC-CCCEEEEECCCCEEEEEcCC--C---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEE---CCCCeEE
Q 011014          132 HPKGLAVDD-RGNIYIADTMNMAIRKISDT--G---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSCSLL  202 (495)
Q Consensus       132 ~P~GIAVD~-dGnIYVAD~~N~rIrk~d~~--G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v---d~~G~Ly  202 (495)
                      .+.|+++|. ++.|||++- +..|++++.+  +   ...+.... +   +        .-...|.||++.   +.+|.|+
T Consensus       181 q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~-g---~--------~l~~D~EGlaiy~~~~~~Gyli  247 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRAD-G---R--------HLTPDIEGLTIYYAADGKGYLL  247 (353)
T ss_dssp             CEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECS-S---S--------SCCSCEEEEEEEECGGGCEEEE
T ss_pred             ccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeeccc-C---c--------cccCCccccEEEEcCCCCeEEE
Confidence            567999998 577999986 6789999832  2   23331110 0   0        012467888855   3477999


Q ss_pred             EEECCCCeEEEEECCCC
Q 011014          203 VIDRGNQAIREIQLHDD  219 (495)
Q Consensus       203 VaD~gN~rI~~~d~~g~  219 (495)
                      +++-++++..+|+..+.
T Consensus       248 vSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         248 ASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEGGGTEEEEEESSTT
T ss_pred             EEcCCCCeEEEEecCCC
Confidence            99999999999998763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.56  E-value=16  Score=33.02  Aligned_cols=143  Identities=9%  Similarity=-0.033  Sum_probs=76.6

Q ss_pred             CCc-eEEEEcCCCcEEEEECCCCeeEEEEc--CC-CC--c-cccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEE
Q 011014           83 MEP-FSVAVSPSGELLVLDSENNSRPKLVA--GS-PE--G-YYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIR  155 (495)
Q Consensus        83 ~~P-~GIAVd~dG~LyVaDs~n~~ii~iva--Gs-~~--g-~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIr  155 (495)
                      ..| ..+++++||.++++-..++ .+++..  +. ..  . ..|+         -..-..|+++++|+++++=...+.|+
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~-~i~iw~~~~~~~~~~~~l~gH---------~~~V~~l~fsp~~~~l~s~s~D~~i~   76 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNH-EVHIYEKSGNKWVQVHELKEH---------NGQVTGVDWAPDSNRIVTCGTDRNAY   76 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSS-EEEEEEEETTEEEEEEEEECC---------SSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCC-EEEEEECCCCCEEEEEEecCC---------CCCEEEEEECCCCCEEEEEECCCeEE
Confidence            356 7899999999887766655 444442  11 10  0 0111         11235899999999777655567888


Q ss_pred             EEcCC-C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce----ee-C-CC
Q 011014          156 KISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC----SD-N-YD  226 (495)
Q Consensus       156 k~d~~-G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~----~~-~-~~  226 (495)
                      +++.+ +  ..++.-..               .-....+++ ..++++.+++-..++.|+.++.+....    .. . ..
T Consensus        77 vWd~~~~~~~~~~~~~~---------------~~~~v~~i~-~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~  140 (371)
T d1k8kc_          77 VWTLKGRTWKPTLVILR---------------INRAARCVR-WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI  140 (371)
T ss_dssp             EEEEETTEEEEEEECCC---------------CSSCEEEEE-ECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred             EEeeccccccccccccc---------------ccccccccc-cccccccceeecccCcceeeeeeccccccccccccccc
Confidence            88843 2  22221100               011234566 466666666666677777666554332    11 1 11


Q ss_pred             CCCcceEEEEecCcCeEEEEEccCCce
Q 011014          227 DTFHLGIFVLVAAAFFGYMLALLQRRV  253 (495)
Q Consensus       227 ~g~P~GIAvd~~a~~~~yv~d~~~~Rv  253 (495)
                      .+.-..+++..  .+...++......|
T Consensus       141 ~~~v~~v~~~p--~~~~l~s~s~D~~v  165 (371)
T d1k8kc_         141 RSTVLSLDWHP--NSVLLAAGSCDFKC  165 (371)
T ss_dssp             CSCEEEEEECT--TSSEEEEEETTSCE
T ss_pred             ccccccccccc--cccceeccccCcEE
Confidence            22234555543  34445666666666

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=81.92  E-value=22  Score=33.65  Aligned_cols=115  Identities=15%  Similarity=0.184  Sum_probs=66.1

Q ss_pred             ccCCcceEEE--cC-CCCEEE--EECCCCEEEEE--c--CCC-cEE-EecCcccCCCCCCCCCCcCcccCCCceEEEECC
Q 011014          129 RMNHPKGLAV--DD-RGNIYI--ADTMNMAIRKI--S--DTG-VTT-IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS  197 (495)
Q Consensus       129 ~f~~P~GIAV--D~-dGnIYV--AD~~N~rIrk~--d--~~G-V~t-iaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~  197 (495)
                      .+..|.|||+  ++ +|.+|+  .+. ..++..+  .  .+| +.. ... ...             .-..+.|+++.+.
T Consensus       126 ~~~~vYGlc~y~~~~~g~~~afv~~k-~G~v~q~~l~~~~~g~v~~~lvr-~f~-------------~~~q~EGCVvDde  190 (353)
T d1h6la_         126 AIDEVYGFSLYHSQKTGKYYAMVTGK-EGEFEQYELNADKNGYISGKKVR-AFK-------------MNSQTEGMAADDE  190 (353)
T ss_dssp             SSSSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEECTTSSEEEEEEE-EEE-------------CSSCEEEEEEETT
T ss_pred             ccCcceEEEEEecCCCCeEEEEEEcC-CceEEEEEEEcCCCCceeeEeee-ccC-------------CCCccceEEEeCC
Confidence            3556889999  55 566554  443 4555543  2  334 211 111 000             0124567887888


Q ss_pred             CCeEEEEECCCCeEEEEECCCCce------eeCCC---CCCcceEEEEecCcCeEEEEEc--cCCceEEEeeCCC
Q 011014          198 SCSLLVIDRGNQAIREIQLHDDDC------SDNYD---DTFHLGIFVLVAAAFFGYMLAL--LQRRVQAMFSSKD  261 (495)
Q Consensus       198 ~G~LyVaD~gN~rI~~~d~~g~~~------~~~~~---~g~P~GIAvd~~a~~~~yv~d~--~~~Rv~~~~~s~~  261 (495)
                      .+.|||++. +..|++++.+-...      ....+   .+-|.||++-..+...+|+...  .++++  .++...
T Consensus       191 ~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f--~vydr~  262 (353)
T d1h6la_         191 YGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSY--AIYERQ  262 (353)
T ss_dssp             TTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEE--EEEESS
T ss_pred             CCcEEEecC-ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeE--EEEecC
Confidence            899999997 57899998764321      11222   2349999998765555555554  44444  455443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.36  E-value=19  Score=31.90  Aligned_cols=121  Identities=12%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC-
Q 011014           85 PFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG-  161 (495)
Q Consensus        85 P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G-  161 (495)
                      -..|+++++|+ ++++-+... .+++.............+     .-..-..|+++++|+++++=...+.|+.++. ++ 
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~-~i~i~d~~~~~~~~~~~~-----~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~  222 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDN-TVAIFEGPPFKFKSTFGE-----HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT  222 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTS-CEEEEETTTBEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cccccccccceeeeccccccc-cccccccccccccccccc-----ccccccccccCcccccccccccccccccccccccc
Confidence            46788888877 455444333 455554322110000000     1122368999999997777666788999883 33 


Q ss_pred             -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 011014          162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS  222 (495)
Q Consensus       162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~  222 (495)
                       +.++... .....+.         -..-..++ ..+++.++++-...+.|+.++.....+.
T Consensus       223 ~~~~~~~~-~~~~~~h---------~~~V~~~~-~s~~~~~l~tgs~Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         223 KTGVFEDD-SLKNVAH---------SGSVFGLT-WSPDGTKIASASADKTIKIWNVATLKVE  273 (311)
T ss_dssp             EEEECBCT-TSSSCSS---------SSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccccccc-ccccccc---------cccccccc-cCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence             2222111 0000000         01123555 4666666666556677888888776654