Citrus Sinensis ID: 011022

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----

MAADKVVETVVVGNYVEMETEGKPQNMKSKLSNFFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYTINVFVVVWVLVVGFGFGGWASMTNFIHQIDTFGLFTKCYQCLPPQGVLPPPPHSFNTTVAPSPHHQPSFNHTHHNL

ccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccHHHHHHHHHHHHHHHHccccEEHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc

cccHHHHHHHEcccccHHHHccccccccccHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccccccccccccccccccccccc

MAADKVVETVVVGNYVemetegkpqnmksKLSNFfwhggsvydawfscssNQVAQVLLTLpysfsqlgMLSGILFQLFYGLLGSWTAYLISILYVEYRtrkerekvdfRNHVIQWFEVLDGLLGkhwrnvglafNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGAccattvfipsfhnYRIWSFLGLLMTTYTAWYLTIASLLHGqvegvkhagptKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLnhsnafsllprspfrDMAVILMLIHQFITfgfactplYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIvfpffgpinstvgSLLVSFTVYIIPALAHIFTFKSaaarenaveqppkfvgrwVGTYTINVFVVVWVLVVGFgfggwasmtNFIHQIDTFGLftkcyqclppqgvlpppphsfnttvapsphhqpsfnhthhnl

maadkvvetVVVGNyvemetegkpqnmKSKLSNFFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYTINVFVVVWVLVVGFGFGGWASMTNFIHQIDTFGLFTKCYQCLPPQGVLPPPPHSFNTTVAPSPHHQPSFNHTHHNL

MAADKvvetvvvgnyvEMETEGKPQNMKSKLSNFFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYTINvfvvvwvlvvgfgfggwASMTNFIHQIDTFGLFTKCYQCLppqgvlppppHSFNTTVAPSPHHQPSFNHTHHNL

*****VVETVVVGNYVE*************LSNFFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYTINVFVVVWVLVVGFGFGGWASMTNFIHQIDTFGLFTKCYQCLPPQG******************************

*********************************FFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYTINVFVVVWVLVVGFGFGGWASMTNFIHQIDTFGLFTKCYQCLPPQ*******************************

***************************KSKLSNFFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYTINVFVVVWVLVVGFGFGGWASMTNFIHQIDTFGLFTKCYQCLPPQG******************************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		495	2.2.26 [Sep-21-2011]
Q8L883		490	Auxin transporter-like pr	N/A	no	0.977	0.987	0.893	0.0
Q9S836		483	Auxin transporter-like pr	yes	no	0.965	0.989	0.855	0.0
Q9FEL6		465	Auxin transporter-like pr	N/A	no	0.937	0.997	0.851	0.0
Q7XGU4		547	Auxin transporter-like pr	no	no	0.878	0.795	0.843	0.0
Q9CA25		470	Auxin transporter-like pr	no	no	0.931	0.980	0.848	0.0
Q96247		485	Auxin transporter protein	no	no	0.913	0.931	0.807	0.0
Q53JG7		480	Putative auxin transporte	no	no	0.933	0.962	0.771	0.0
Q8L884		482	Auxin transporter-like pr	N/A	no	0.927	0.952	0.779	0.0
Q9LFB2		488	Auxin transporter-like pr	no	no	0.921	0.934	0.799	0.0
Q9FEL7		484	Auxin transporter-like pr	N/A	no	0.929	0.950	0.777	0.0

>sp\|Q8L883\|LAX5_MEDTR Auxin transporter-like protein 5 OS=Medicago truncatula GN=LAX5 PE=2 SV=1	Back alignment and function desciption

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/487 (89%), Positives = 463/487 (95%), Gaps = 3/487 (0%)

Query: 1   MAADKVVETVVVGNYVEMETEGKP-QNMKSKLSNFFWHGGSVYDAWFSCSSNQVAQVLLT 59
           MA DKV ETV+VGNYVEME+EGKP Q++KSKLSNF WHGGS YDAWFSC+SNQVAQVLLT
Sbjct: 3   MANDKVAETVIVGNYVEMESEGKPPQDIKSKLSNFLWHGGSAYDAWFSCASNQVAQVLLT 62

Query: 60  LPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVL 119
           LPYSFSQLGMLSGILFQLFYG+LGSWTAYLISILYVEYRTRKEREKV+FR+HVIQWFEVL
Sbjct: 63  LPYSFSQLGMLSGILFQLFYGILGSWTAYLISILYVEYRTRKEREKVNFRSHVIQWFEVL 122

Query: 120 DGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF 179
           DGLLGKHWRNVGL FNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF
Sbjct: 123 DGLLGKHWRNVGLGFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF 182

Query: 180 IPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTF 239
           IPSFHNYRIWSFLGL+MTTYTAWYLTIA++LHGQVEGVKH+GP K++LYFTGATNILYTF
Sbjct: 183 IPSFHNYRIWSFLGLVMTTYTAWYLTIAAVLHGQVEGVKHSGPNKIILYFTGATNILYTF 242

Query: 240 GGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLP 299
           GGHAVTVEIMHAMWKPQKFKAIYLLATLYV+TLT+PSA AVYWAFGDMLLNHSNAF+LLP
Sbjct: 243 GGHAVTVEIMHAMWKPQKFKAIYLLATLYVLTLTIPSATAVYWAFGDMLLNHSNAFALLP 302

Query: 300 RSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFL 359
           +SPFRDMAVILMLIHQFITFGFACTPLYFVWEK +GMHECKSLCKRA  RLPVVIPIWFL
Sbjct: 303 KSPFRDMAVILMLIHQFITFGFACTPLYFVWEKTVGMHECKSLCKRALVRLPVVIPIWFL 362

Query: 360 AIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYT 419
           AI+FPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKS++AR+NAVEQPPKFVGRWVGT+ 
Sbjct: 363 AIIFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSSSARQNAVEQPPKFVGRWVGTFV 422

Query: 420 INVFVVVWVLVVGFGFGGWASMTNFIHQIDTFGLFTKCYQCLPPQGVLPP-PPHSFNTTV 478
           INVF+VVWVL+VGFGFGGWASM NF+HQIDTFGLFTKCYQC PP   +P  PPH  N T 
Sbjct: 423 INVFIVVWVLIVGFGFGGWASMVNFVHQIDTFGLFTKCYQCPPPTPSVPTMPPHQMNAT- 481

Query: 479 APSPHHQ 485
           APSPHH 
Sbjct: 482 APSPHHH 488

Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex (By similarity). May be involved in lateral roots and nodules formation.
Medicago truncatula (taxid: 3880)

>sp\|Q9S836\|LAX2_ARATH Auxin transporter-like protein 2 OS=Arabidopsis thaliana GN=LAX2 PE=2 SV=1	Back alignment and function description

>sp\|Q9FEL6\|LAX3_MEDTR Auxin transporter-like protein 3 OS=Medicago truncatula GN=LAX3 PE=2 SV=1	Back alignment and function description

>sp\|Q7XGU4\|LAX3_ORYSJ Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica GN=Os10g0147400 PE=2 SV=1	Back alignment and function description

>sp\|Q9CA25\|LAX3_ARATH Auxin transporter-like protein 3 OS=Arabidopsis thaliana GN=LAX3 PE=2 SV=1	Back alignment and function description

>sp\|Q96247\|AUX1_ARATH Auxin transporter protein 1 OS=Arabidopsis thaliana GN=AUX1 PE=1 SV=1	Back alignment and function description

>sp\|Q53JG7\|LAX4_ORYSJ Putative auxin transporter-like protein 4 OS=Oryza sativa subsp. japonica GN=Os11g0169200 PE=2 SV=1	Back alignment and function description

>sp\|Q8L884\|LAX4_MEDTR Auxin transporter-like protein 4 OS=Medicago truncatula GN=LAX4 PE=2 SV=1	Back alignment and function description

>sp\|Q9LFB2\|LAX1_ARATH Auxin transporter-like protein 1 OS=Arabidopsis thaliana GN=LAX1 PE=1 SV=1	Back alignment and function description

>sp\|Q9FEL7\|LAX2_MEDTR Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		495
365189140		493	auxin influx carrier protein [Mangifera	0.995	1.0	0.927	0.0
365189142		494	auxin influx carrier protein [Mangifera	0.997	1.0	0.915	0.0
224103225		491	auxin influx carrier component [Populus	0.987	0.995	0.898	0.0
75245780		490	RecName: Full=Auxin transporter-like pro	0.977	0.987	0.893	0.0
14279184		491	putative AUX1-like permease [Populus tre	0.987	0.995	0.888	0.0
224080600		491	auxin influx carrier component [Populus	0.987	0.995	0.898	0.0
350539543		490	LAX5 protein [Solanum lycopersicum] gi\|3	0.931	0.940	0.924	0.0
255583893		493	amino acid transporter, putative [Ricinu	0.993	0.997	0.912	0.0
350539513		494	LAX2 protein [Solanum lycopersicum] gi\|3	0.927	0.929	0.924	0.0
356544427		488	PREDICTED: auxin transporter-like protei	0.985	1.0	0.904	0.0

>gi\|365189140\|emb\|CCF23027.1\| auxin influx carrier protein [Mangifera indica] gi\|381280185\|gb\|AFG18187.1\| auxin influx carrier component [Mangifera indica]	Back alignment and taxonomy information

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/495 (92%), Positives = 483/495 (97%), Gaps = 2/495 (0%)

Query: 1   MAADKVVETVVVGNYVEMETEGKPQNMKSKLSNFFWHGGSVYDAWFSCSSNQVAQVLLTL 60
           MAADKVVETV+VGNYVEMETEGKPQ++KSKLS FFWHGGSVYDAWFSC+SNQVAQVLLTL
Sbjct: 1   MAADKVVETVIVGNYVEMETEGKPQDIKSKLSKFFWHGGSVYDAWFSCASNQVAQVLLTL 60

Query: 61  PYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLD 120
           PYSFSQLGMLSGILFQLFYGL+GSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLD
Sbjct: 61  PYSFSQLGMLSGILFQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLD 120

Query: 121 GLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFI 180
           GLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFI
Sbjct: 121 GLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFI 180

Query: 181 PSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFG 240
           PSFHNYRIWSF+GL+MTTYTAWYLTIASL+HGQVEGVKH+GPTKLVLYFTGATNILYTFG
Sbjct: 181 PSFHNYRIWSFIGLVMTTYTAWYLTIASLIHGQVEGVKHSGPTKLVLYFTGATNILYTFG 240

Query: 241 GHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPR 300
           GHAVTVEIMHAMWKPQKFKAIYLLATLYV+TLTLPSA+AVYWAFGDMLL+HSNAF+LLP+
Sbjct: 241 GHAVTVEIMHAMWKPQKFKAIYLLATLYVLTLTLPSASAVYWAFGDMLLSHSNAFALLPK 300

Query: 301 SPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLA 360
           SPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIG+HECKSLCKRAAARLPVVIPIWFLA
Sbjct: 301 SPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGLHECKSLCKRAAARLPVVIPIWFLA 360

Query: 361 IVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYTI 420
           I+FPFFGPINSTVGSLLVSFTVYIIPALAH+FTFKSAAARENAVEQPP+FVGRW+GTYTI
Sbjct: 361 IIFPFFGPINSTVGSLLVSFTVYIIPALAHVFTFKSAAARENAVEQPPRFVGRWIGTYTI 420

Query: 421 NVFVVVWVLVVGFGFGGWASMTNFIHQIDTFGLFTKCYQCLPPQGVLPPPPHSFNTTVAP 480
           NVF+VVWVLVVGFGFGGWASM NFIHQIDTFGLFTKCYQC  PQ + PPPPH+ NTT AP
Sbjct: 421 NVFIVVWVLVVGFGFGGWASMINFIHQIDTFGLFTKCYQCP-PQALPPPPPHTLNTT-AP 478

Query: 481 SPHHQPSFNHTHHNL 495
            P H P+ NHTHH+L
Sbjct: 479 PPLHHPTMNHTHHSL 493

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|365189142\|emb\|CCF23028.1\| auxin influx carrier protein [Mangifera indica] gi\|381280187\|gb\|AFG18188.1\| auxin influx carrier component [Mangifera indica]	Back alignment and taxonomy information

>gi\|224103225\|ref\|XP_002312973.1\| auxin influx carrier component [Populus trichocarpa] gi\|118482954\|gb\|ABK93389.1\| unknown [Populus trichocarpa] gi\|222849381\|gb\|EEE86928.1\| auxin influx carrier component [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|75245780\|sp\|Q8L883.1\|LAX5_MEDTR RecName: Full=Auxin transporter-like protein 5; AltName: Full=AUX1-like protein 5; AltName: Full=MtLAX5 gi\|21586474\|gb\|AAM55306.1\| auxin influx carrier protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|14279184\|gb\|AAK58522.1\|AF263100_1 putative AUX1-like permease [Populus tremula x Populus tremuloides]	Back alignment and taxonomy information

>gi\|224080600\|ref\|XP_002306175.1\| auxin influx carrier component [Populus trichocarpa] gi\|222849139\|gb\|EEE86686.1\| auxin influx carrier component [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|350539543\|ref\|NP_001233924.1\| LAX5 protein [Solanum lycopersicum] gi\|337271828\|gb\|AEI69672.1\| LAX5 protein [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|255583893\|ref\|XP_002532696.1\| amino acid transporter, putative [Ricinus communis] gi\|223527563\|gb\|EEF29681.1\| amino acid transporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|350539513\|ref\|NP_001234675.1\| LAX2 protein [Solanum lycopersicum] gi\|337271822\|gb\|AEI69669.1\| LAX2 protein [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|356544427\|ref\|XP_003540652.1\| PREDICTED: auxin transporter-like protein 5-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		495
TAIR\|locus:2047102		483	LAX2 "AT2G21050" [Arabidopsis	0.937	0.960	0.831	1.4e-220
TAIR\|locus:2203226		470	LAX3 "AT1G77690" [Arabidopsis	0.927	0.976	0.802	4.2e-205
TAIR\|locus:2005496		485	AUX1 "AT2G38120" [Arabidopsis	0.872	0.890	0.798	4.3e-196
TAIR\|locus:2150089		488	LAX1 "AT5G01240" [Arabidopsis	0.894	0.907	0.784	6.3e-195
WB\|WBGene00012529		519	Y32F6A.4 [Caenorhabditis elega	0.705	0.672	0.221	1.1e-12
WB\|WBGene00022012		465	Y59H11AR.4 [Caenorhabditis ele	0.684	0.729	0.244	1.1e-09
UNIPROTKB\|Q85V22		441	ht "Histidine amino acid trans	0.456	0.512	0.246	9.1e-09
WB\|WBGene00019837		494	R02F2.8 [Caenorhabditis elegan	0.646	0.647	0.211	3.5e-08
TAIR\|locus:2013056		448	AT1G71680 [Arabidopsis thalian	0.664	0.734	0.238	3.8e-08
TAIR\|locus:2008605		441	AT1G67640 "AT1G67640" [Arabido	0.668	0.750	0.227	6.1e-08

TAIR\|locus:2047102 LAX2 "AT2G21050" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2130 (754.9 bits), Expect = 1.4e-220, P = 1.4e-220
 Identities = 396/476 (83%), Positives = 425/476 (89%)

Query:    17 EMETEGKPQNMKSKLSNFFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQ 76
             EME +GK  ++KSKLS+ FWHGGS YDAWFSC+SNQVAQVLLTLPYSFSQLGMLSGILFQ
Sbjct:    18 EMEKDGKALDIKSKLSDMFWHGGSAYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQ 77

Query:    77 LFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNC 136
             LFYG+LGSWTAYLISILYVEYRTRKEREKV+FRNHVIQWFEVLDGLLGKHWRNVGLAFNC
Sbjct:    78 LFYGILGSWTAYLISILYVEYRTRKEREKVNFRNHVIQWFEVLDGLLGKHWRNVGLAFNC 137

Query:   137 TFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLM 196
             TFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLM
Sbjct:   138 TFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLM 197

Query:   197 TTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ 256
             TTYTAWYLTIAS+LHGQVEGVKH+GP+KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ
Sbjct:   198 TTYTAWYLTIASILHGQVEGVKHSGPSKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ 257

Query:   257 KFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQF 316
             KFK+IYL ATLYV+TLTLPSA+AVYWAFGD+LLNHSNAF+LLP++ +RD AV+LMLIHQF
Sbjct:   258 KFKSIYLFATLYVLTLTLPSASAVYWAFGDLLLNHSNAFALLPKNLYRDFAVVLMLIHQF 317

Query:   317 ITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSL 376
             ITFGFACTPLYFVWEK IGMHEC+S+CKRAAARLPVVIPIWFLAI+FPFFGPINSTVGSL
Sbjct:   318 ITFGFACTPLYFVWEKLIGMHECRSMCKRAAARLPVVIPIWFLAIIFPFFGPINSTVGSL 377

Query:   377 LVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYTINXXXXXXXXXXXXXXX 436
             LVSFTVYIIPALAHIFTF+S+AARENAVEQPP+F+GRW G +TIN               
Sbjct:   378 LVSFTVYIIPALAHIFTFRSSAARENAVEQPPRFLGRWTGAFTINAFIVVWVFIVGFGFG 437

Query:   437 XXASMTNFIHQIDTFGLFTKCYQCLXXXXXXXXXXHSFNTTVAPSPHHQPSFNHTH 492
               ASM NF+HQIDTFGLFTKCYQC                 V+P P   P FNHTH
Sbjct:   438 GWASMINFVHQIDTFGLFTKCYQCPPP------------VMVSPPPISHPHFNHTH 481

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

GO:0048829 "root cap development" evidence=IGI

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

TAIR\|locus:2203226 LAX3 "AT1G77690" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2005496 AUX1 "AT2G38120" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2150089 LAX1 "AT5G01240" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

WB\|WBGene00012529 Y32F6A.4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

WB\|WBGene00022012 Y59H11AR.4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]	Back alignment and assigned GO terms

WB\|WBGene00019837 R02F2.8 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

TAIR\|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFB2	LAX1_ARATH	No assigned EC number	0.7991	0.9212	0.9344	no	no
Q9CA25	LAX3_ARATH	No assigned EC number	0.8482	0.9313	0.9808	no	no
Q53JG7	LAX4_ORYSJ	No assigned EC number	0.7713	0.9333	0.9625	no	no
Q96247	AUX1_ARATH	No assigned EC number	0.8075	0.9131	0.9319	no	no
Q9FEL7	LAX2_MEDTR	No assigned EC number	0.7773	0.9292	0.9504	N/A	no
Q9FEL6	LAX3_MEDTR	No assigned EC number	0.8519	0.9373	0.9978	N/A	no
Q8L884	LAX4_MEDTR	No assigned EC number	0.7799	0.9272	0.9522	N/A	no
Q5N892	LAX1_ORYSJ	No assigned EC number	0.7899	0.9090	0.9146	no	no
Q688J2	LAX2_ORYSJ	No assigned EC number	0.7620	0.9474	0.9730	no	no
Q8L883	LAX5_MEDTR	No assigned EC number	0.8932	0.9777	0.9877	N/A	no
Q9S836	LAX2_ARATH	No assigned EC number	0.8551	0.9656	0.9896	yes	no
Q9FEL8	LAX1_MEDTR	No assigned EC number	0.7924	0.9090	0.9394	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PtrAUX6	SubName- Full=Putative uncharacterized protein; (491 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		495
PLN03074		473	PLN03074, PLN03074, auxin influx permease; Provisi	0.0
pfam01490		406	pfam01490, Aa_trans, Transmembrane amino acid tran	5e-72

>gnl\|CDD\|215559 PLN03074, PLN03074, auxin influx permease; Provisional	Back alignment and domain information

 Score =  931 bits (2409), Expect = 0.0
 Identities = 394/470 (83%), Positives = 424/470 (90%), Gaps = 7/470 (1%)

Query: 1   MAADKVVETVVVGNYVEMETE-------GKPQNMKSKLSNFFWHGGSVYDAWFSCSSNQV 53
           M A K  ET +VGNYVEME E       G     KS+L +  WHGGSVYDAWFSC+SNQV
Sbjct: 1   MMAGKQAETAIVGNYVEMEVEGGGEKEEGGGGGGKSRLKSLLWHGGSVYDAWFSCASNQV 60

Query: 54  AQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113
           AQVLLTLPYSFSQLGMLSGILFQ+FYGLLGSWTAYLIS+LYVEYR RKEREKVDF+NHVI
Sbjct: 61  AQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120

Query: 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGAC 173
           QWFEVLDGLLG +W+NVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGAC
Sbjct: 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGAC 180

Query: 174 CATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGAT 233
           CATTVFIPSFHNYRIWSFLGLLMTTYTAWY+TIA+L HGQVEGVKH+GPTKLVLYFTGAT
Sbjct: 181 CATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGAT 240

Query: 234 NILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSN 293
           NILYTFGGHAVTVEIMHAMWKPQKFK IYL ATLYV+TLTLPSAAAVYWAFGD LL HSN
Sbjct: 241 NILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSN 300

Query: 294 AFSLLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVV 353
           AFSLLPRS +RD AVILMLIHQFITFGFACTPLYFVWEKAIG+H+ KS+C RA ARLPVV
Sbjct: 301 AFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVV 360

Query: 354 IPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGR 413
           +PIWFLAI+FPFFGPINS VG+LLVSFTVYIIP+LAH+ T++SA+AR+NA E+PP F+  
Sbjct: 361 VPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPS 420

Query: 414 WVGTYTINVFVVVWVLVVGFGFGGWASMTNFIHQIDTFGLFTKCYQCLPP 463
           W G Y +N FVVVWVLVVGFGFGGWASMTNF+ QIDTFGLF KCYQC PP
Sbjct: 421 WTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCYQCPPP 470

Length = 473

>gnl\|CDD\|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		495
PLN03074		473	auxin influx permease; Provisional	100.0
KOG1304		449	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206		467	amino acid transporter; Provisional	100.0
KOG1303		437	consensus Amino acid transporters [Amino acid tran	100.0
PF01490		409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG4303		524	consensus Vesicular inhibitory amino acid transpor	100.0
KOG1305		411	consensus Amino acid transporter protein [Amino ac	100.0
COG0814		415	SdaC Amino acid permeases [Amino acid transport an	99.97
PRK10483		414	tryptophan permease; Provisional	99.92
PF03222		394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.92
PRK09664		415	tryptophan permease TnaB; Provisional	99.91
TIGR00837		381	araaP aromatic amino acid transport protein. aroma	99.9
PRK15132		403	tyrosine transporter TyrP; Provisional	99.89
PRK13629		443	threonine/serine transporter TdcC; Provisional	99.79
TIGR00814		397	stp serine transporter. The HAAAP family includes	99.75
PRK10249		458	phenylalanine transporter; Provisional	99.56
TIGR00912		359	2A0309 spore germination protein (amino acid perme	99.53
PRK10655		438	potE putrescine transporter; Provisional	99.5
TIGR01773		452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.47
PRK15049		499	L-asparagine permease; Provisional	99.47
PRK11387		471	S-methylmethionine transporter; Provisional	99.45
TIGR00909		429	2A0306 amino acid transporter.	99.44
PRK10435		435	cadB lysine/cadaverine antiporter; Provisional	99.43
TIGR00905		473	2A0302 transporter, basic amino acid/polyamine ant	99.43
PRK10238		456	aromatic amino acid transporter; Provisional	99.42
PRK10580		457	proY putative proline-specific permease; Provision	99.41
PRK10644		445	arginine:agmatin antiporter; Provisional	99.4
PRK10746		461	putative transport protein YifK; Provisional	99.39
PRK11049		469	D-alanine/D-serine/glycine permease; Provisional	99.38
TIGR03810		468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.37
PRK11021		410	putative transporter; Provisional	99.36
PRK10836		489	lysine transporter; Provisional	99.35
TIGR00913		478	2A0310 amino acid permease (yeast).	99.35
TIGR00906		557	2A0303 cationic amino acid transport permease.	99.33
TIGR00908		442	2A0305 ethanolamine permease. The three genes used	99.28
PF03845		320	Spore_permease: Spore germination protein; InterPr	99.27
PRK10197		446	gamma-aminobutyrate transporter; Provisional	99.27
COG1113		462	AnsP Gamma-aminobutyrate permease and related perm	99.25
TIGR00911		501	2A0308 L-type amino acid transporter.	99.22
PF13520		426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.2
TIGR00930		953	2a30 K-Cl cotransporter.	99.18
PRK11357		445	frlA putative fructoselysine transporter; Provisio	99.15
KOG1287		479	consensus Amino acid transporters [Amino acid tran	99.12
COG0531		466	PotE Amino acid transporters [Amino acid transport	99.08
COG0833		541	LysP Amino acid transporters [Amino acid transport	99.03
TIGR03428		475	ureacarb_perm permease, urea carboxylase system. A	99.02
PRK15238		496	inner membrane transporter YjeM; Provisional	98.92
TIGR00907		482	2A0304 amino acid permease (GABA permease).	98.85
TIGR00910		507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	98.8
KOG3832		319	consensus Predicted amino acid transporter [Genera	98.78
TIGR03813		474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.78
KOG1286		554	consensus Amino acid transporters [Amino acid tran	98.6
KOG1289		550	consensus Amino acid transporters [Amino acid tran	98.55
PF00324		478	AA_permease: Amino acid permease; InterPro: IPR004	98.5
PRK11375		484	allantoin permease; Provisional	98.48
TIGR00800		442	ncs1 NCS1 nucleoside transporter family. The NCS1	98.44
COG1457		442	CodB Purine-cytosine permease and related proteins	98.34
COG3949		349	Uncharacterized membrane protein [Function unknown	98.23
COG0591		493	PutP Na+/proline symporter [Amino acid transport a	98.1
TIGR00813		407	sss transporter, SSS family. have different number	98.07
PF00474		406	SSF: Sodium:solute symporter family; InterPro: IPR	97.93
PRK12488		549	acetate permease; Provisional	97.92
TIGR02358		386	thia_cytX probable hydroxymethylpyrimidine transpo	97.89
TIGR02119		471	panF sodium/pantothenate symporter. Pantothenate (	97.88
PRK15419		502	proline:sodium symporter PutP; Provisional	97.78
PRK09442		483	panF sodium/panthothenate symporter; Provisional	97.77
PRK11017		404	codB cytosine permease; Provisional	97.74
TIGR02711		549	symport_actP cation/acetate symporter ActP. Member	97.67
TIGR00835		425	agcS amino acid carrier protein. Members of the AG	97.65
TIGR02121		487	Na_Pro_sym sodium/proline symporter. This family c	97.62
PRK09395		551	actP acetate permease; Provisional	97.37
COG1953		497	FUI1 Cytosine/uracil/thiamine/allantoin permeases	97.31
TIGR03648		552	Na_symport_lg probable sodium:solute symporter, VC	97.18
PF02133		440	Transp_cyt_pur: Permease for cytosine/purines, ura	96.94
TIGR00796		378	livcs branched-chain amino acid uptake carrier. tr	96.69
PF02554		376	CstA: Carbon starvation protein CstA; InterPro: IP	96.5
PRK10484		523	putative transporter; Provisional	96.23
PF01566		358	Nramp: Natural resistance-associated macrophage pr	95.59
PRK15015		701	carbon starvation protein A; Provisional	95.02
PF05525		427	Branch_AA_trans: Branched-chain amino acid transpo	94.95
PF01235		416	Na_Ala_symp: Sodium:alanine symporter family; Inte	94.87
COG1966		575	CstA Carbon starvation protein, predicted membrane	94.14
COG4147		529	DhlC Predicted symporter [General function predict	92.5
COG1115		452	AlsT Na+/alanine symporter [Amino acid transport a	91.96
PRK00701		439	manganese transport protein MntH; Reviewed	90.96
TIGR00796		378	livcs branched-chain amino acid uptake carrier. tr	88.89
COG0733		439	Na+-dependent transporters of the SNF family [Gene	87.61
KOG1288		945	consensus Amino acid transporters [Amino acid tran	82.78
TIGR01197		390	nramp NRAMP (natural resistance-associated macroph	82.75

>PLN03074 auxin influx permease; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.2e-72  Score=582.70  Aligned_cols=464  Identities=85%  Similarity=1.450  Sum_probs=415.7

Q ss_pred             Ccccchhhhhhhccccccccc-------CCCcccccccccccccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHH
Q 011022            1 MAADKVVETVVVGNYVEMETE-------GKPQNMKSKLSNFFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGI   73 (495)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~   73 (495)
                      |..++|.|+...++++|.+.+       +.....+.+.+|..+++++.+++.+|++++.+|+|+|+||+||+++||++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gi   80 (473)
T PLN03074          1 MMAGKQAETAIVGNYVEMEVEGGGEKEEGGGGGGKSRLKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGI   80 (473)
T ss_pred             CCCccccchhHhhccchhccccccccccCCCCCCceeeeecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHH
Confidence            456788888888888888754       2225566777888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhh
Q 011022           74 LFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASN  153 (495)
Q Consensus        74 i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~  153 (495)
                      +.++++++++.||+++|.+++.++++|+++++.+|++++.+|.|+++..+||+++.+..+++++++++.++.|++.++++
T Consensus        81 i~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~  160 (473)
T PLN03074         81 LFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASN  160 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence            99999999999999999999999998887777888887789999999999999999999999999999999999999999


Q ss_pred             cccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCchHHHHHhhhh
Q 011022          154 IYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGAT  233 (495)
Q Consensus       154 ~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  233 (495)
                      ++.+++..+++.|+++++++++|++++|++++++++|++|+.++++.++++++.++.++..+++++..+.++..++.+++
T Consensus       161 ~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~  240 (473)
T PLN03074        161 IYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGAT  240 (473)
T ss_pred             hhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHH
Confidence            88888888999999999999999999999999999999999987776666766666666655565544556778888889


Q ss_pred             HHHHhhcccchhHHHHhhccCCcchhHHHHHHHHHHHHHHHhHHHHHHHHhcccccccccccccCCCchHHHHHHHHHHH
Q 011022          234 NILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLI  313 (495)
Q Consensus       234 ~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l~~~~~~~i~~~~~~i  313 (495)
                      +++|||+||.++|+++++||+|++|++++.+++.+++.+|+.+|+.||+.|||++.++++++.|+|++.+.+++++++++
T Consensus       241 ~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i  320 (473)
T PLN03074        241 NILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLI  320 (473)
T ss_pred             HHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999986556788889877788999999999


Q ss_pred             HHHHHHHhhhccHHHHHHHHhcCCCcccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHH
Q 011022          314 HQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFT  393 (495)
Q Consensus       314 ~~~~sypl~~~p~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~  393 (495)
                      +++.+|++++.|+.+.+|+..+.+++++...|.++|+.+++.++++|+.+|+|+++++++||++++.+++++|+++|+++
T Consensus       321 ~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~  400 (473)
T PLN03074        321 HQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLT  400 (473)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998865555567789999999999999999999999999999999999999999999999999


Q ss_pred             hchhhhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHhccccccccccccCCCCC
Q 011022          394 FKSAAARENAVEQPPKFVGRWVGTYTINVFVVVWVLVVGFGFGGWASMTNFIHQIDTFGLFTKCYQCLPPQ  464 (495)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~iiv~~G~~~~v~Gty~si~~ii~~~~~~~~~~~~~~c~~~~  464 (495)
                      ++++.+|++..|||++...+|.++.++|+++++++|+++++.|+|+|+++|++++++++.|++||+|.++.
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~~c~~~~  471 (473)
T PLN03074        401 YRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCYQCPPPS  471 (473)
T ss_pred             hcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhccCCCCC
Confidence            98888888888999865555655678999999866888889999999999999999999999999998873

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PTZ00206 amino acid transporter; Provisional	Back alignment and domain information

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)	Back alignment and domain information

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]	Back alignment and domain information

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK10483 tryptophan permease; Provisional	Back alignment and domain information

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>PRK09664 tryptophan permease TnaB; Provisional	Back alignment and domain information

>TIGR00837 araaP aromatic amino acid transport protein	Back alignment and domain information

>PRK15132 tyrosine transporter TyrP; Provisional	Back alignment and domain information

>PRK13629 threonine/serine transporter TdcC; Provisional	Back alignment and domain information

>TIGR00814 stp serine transporter	Back alignment and domain information

>PRK10249 phenylalanine transporter; Provisional	Back alignment and domain information

>TIGR00912 2A0309 spore germination protein (amino acid permease)	Back alignment and domain information

>PRK10655 potE putrescine transporter; Provisional	Back alignment and domain information

>TIGR01773 GABAperm gamma-aminobutyrate permease	Back alignment and domain information

>PRK15049 L-asparagine permease; Provisional	Back alignment and domain information

>PRK11387 S-methylmethionine transporter; Provisional	Back alignment and domain information

>TIGR00909 2A0306 amino acid transporter	Back alignment and domain information

>PRK10435 cadB lysine/cadaverine antiporter; Provisional	Back alignment and domain information

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family	Back alignment and domain information

>PRK10238 aromatic amino acid transporter; Provisional	Back alignment and domain information

>PRK10580 proY putative proline-specific permease; Provisional	Back alignment and domain information

>PRK10644 arginine:agmatin antiporter; Provisional	Back alignment and domain information

>PRK10746 putative transport protein YifK; Provisional	Back alignment and domain information

>PRK11049 D-alanine/D-serine/glycine permease; Provisional	Back alignment and domain information

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter	Back alignment and domain information

>PRK11021 putative transporter; Provisional	Back alignment and domain information

>PRK10836 lysine transporter; Provisional	Back alignment and domain information

>TIGR00913 2A0310 amino acid permease (yeast)	Back alignment and domain information

>TIGR00906 2A0303 cationic amino acid transport permease	Back alignment and domain information

>TIGR00908 2A0305 ethanolamine permease	Back alignment and domain information

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>PRK10197 gamma-aminobutyrate transporter; Provisional	Back alignment and domain information

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00911 2A0308 L-type amino acid transporter	Back alignment and domain information

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A	Back alignment and domain information

>TIGR00930 2a30 K-Cl cotransporter	Back alignment and domain information

>PRK11357 frlA putative fructoselysine transporter; Provisional	Back alignment and domain information

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03428 ureacarb_perm permease, urea carboxylase system	Back alignment and domain information

>PRK15238 inner membrane transporter YjeM; Provisional	Back alignment and domain information

>TIGR00907 2A0304 amino acid permease (GABA permease)	Back alignment and domain information

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter	Back alignment and domain information

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]	Back alignment and domain information

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter	Back alignment and domain information

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>PRK11375 allantoin permease; Provisional	Back alignment and domain information

>TIGR00800 ncs1 NCS1 nucleoside transporter family	Back alignment and domain information

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	Back alignment and domain information

>COG3949 Uncharacterized membrane protein [Function unknown]	Back alignment and domain information

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>TIGR00813 sss transporter, SSS family	Back alignment and domain information

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells	Back alignment and domain information

>PRK12488 acetate permease; Provisional	Back alignment and domain information

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX	Back alignment and domain information

>TIGR02119 panF sodium/pantothenate symporter	Back alignment and domain information

>PRK15419 proline:sodium symporter PutP; Provisional	Back alignment and domain information

>PRK09442 panF sodium/panthothenate symporter; Provisional	Back alignment and domain information

>PRK11017 codB cytosine permease; Provisional	Back alignment and domain information

>TIGR02711 symport_actP cation/acetate symporter ActP	Back alignment and domain information

>TIGR00835 agcS amino acid carrier protein	Back alignment and domain information

>TIGR02121 Na_Pro_sym sodium/proline symporter	Back alignment and domain information

>PRK09395 actP acetate permease; Provisional	Back alignment and domain information

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily	Back alignment and domain information

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines	Back alignment and domain information

>TIGR00796 livcs branched-chain amino acid uptake carrier	Back alignment and domain information

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex	Back alignment and domain information

>PRK10484 putative transporter; Provisional	Back alignment and domain information

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2	Back alignment and domain information

>PRK15015 carbon starvation protein A; Provisional	Back alignment and domain information

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))	Back alignment and domain information

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups	Back alignment and domain information

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]	Back alignment and domain information

>COG4147 DhlC Predicted symporter [General function prediction only]	Back alignment and domain information

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PRK00701 manganese transport protein MntH; Reviewed	Back alignment and domain information

>TIGR00796 livcs branched-chain amino acid uptake carrier	Back alignment and domain information

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]	Back alignment and domain information

>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		495
3l1l_A		445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.64
3gia_A		444	Uncharacterized protein MJ0609; membrane protein,	99.43
4djk_A		511	Probable glutamate/gamma-aminobutyrate antiporter;	99.25
2jln_A		501	MHP1; hydantoin, transporter, membrane protein, nu	98.83
3dh4_A		530	Sodium/glucose cotransporter; membrane protein, sy	98.12
2xq2_A		593	Sodium/glucose cotransporter; transport protein, i	97.77

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A	Back alignment and structure

Probab=99.64  E-value=2.2e-13  Score=141.03  Aligned_cols=239  Identities=9%  Similarity=-0.025  Sum_probs=147.9

Q ss_pred             cccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022           35 FWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ  114 (495)
Q Consensus        35 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~  114 (495)
                      .+++.+.++..+..+++++|+|++.+|....++|.. +++..++.++++......+    .|+.++.|+.|        .
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~----~el~~~~p~~G--------g   72 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVY----AKMSFLDPSPG--------G   72 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHH----HHHHHHCCCTT--------T
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHH----HHHHccCCCCC--------C
Confidence            345678999999999999999999999998899964 7777777777776666555    45555554322        5


Q ss_pred             HHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHH-HH--HHhhhccCCCCcchhHHHH
Q 011022          115 WFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIF-GA--CCATTVFIPSFHNYRIWSF  191 (495)
Q Consensus       115 y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~-~~--i~~pl~~l~~l~~l~~~s~  191 (495)
                      ..+..++.+||+.+++......+........+....++.+..+.+..+......+. ..  +.+-....+..|...+++.
T Consensus        73 ~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~  152 (445)
T 3l1l_A           73 SYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQA  152 (445)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            66778999999999888776666554444444444444444333322222111111 11  1111222344556666555


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCC----CccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc-chhHHHHHHH
Q 011022          192 LGLLMTTYTAWYLTIASLLHGQVEG----VKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKAIYLLAT  266 (495)
Q Consensus       192 ~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~  266 (495)
                      +.....+...+.+++..+...+.++    .+.....++.+++.++....|+|.|...+....+|+|||+ +.+|.+..+.
T Consensus       153 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~  232 (445)
T 3l1l_A          153 VATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGV  232 (445)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHH
Confidence            4443333222222222222221111    1111222356778888999999999999999999999994 5789999999


Q ss_pred             HHHHHHHHhHHHHHHHHhcc
Q 011022          267 LYVMTLTLPSAAAVYWAFGD  286 (495)
Q Consensus       267 ~~~~~~y~~~g~~gY~~fG~  286 (495)
                      .++.++|+...+......+.
T Consensus       233 ~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          233 LIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHhcCCH
Confidence            99999999888776666654

PyMOL of 3l1l

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C	Back alignment and structure

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A	Back alignment and structure

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A	Back alignment and structure

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}	Back alignment and structure

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		495
d2a65a1		509	Na(+):neurotransmitter symporter homologue LeuT {A	92.26

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.26  E-value=5.4  Score=38.57  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=24.1

Q ss_pred             CchHHHHHHHHHhhhhhh-hchHHHHHHhhC
Q 011022           39 GSVYDAWFSCSSNQVAQV-LLTLPYSFSQLG   68 (495)
Q Consensus        39 ~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G   68 (495)
                      .|..+-++..++..+|.| +.=.||-..+-|
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nG   35 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENG   35 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcC
Confidence            456788899999999998 666999875554

PyMOL of d2a65a1