Citrus Sinensis ID: 011072

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----
Protein Sequence
MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccccccccccccEEEEccccccHHHHHHHHHHHHcccEEEEccEEEEEcccccccccccccEEEEEEEccccccccccccccEEcccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccccccEccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccHHHcccEEEEEEEEccccccHcHHHHHcccccEEEEEEccccccc
Coil and Loop (DISEMBL)
mgrgglssqpsssiplssatavpsngnlgavplvsdVAKRNILGAeerlgssgmvqsLVSPLSNRMILSqaakgndgtgsidsnnagetvamagrvftpsmgmqwrtgnsfqnqnepgqfrgrteiapdQREKFLQRLQQVQQQGHsnllgmplggnkqfssqqnpllqqfnsqgssisaqaglglgvqapgmnsvtsaslqqqpnpihqqssqqtlmsggqkdadvshlkveepqqpqnlpeestpesasspglgknliheddlkapyaidsstgvsasltepaqvvrdtdlspgqplqssqpsgglgvigrrsvsdlgaigdslsgatvssggmhdqMYNMQMLESAfyklpqpkdserarsyiprhpavtppsypqvqapivsnpafwerlsldsygtdTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvandefeqgtyvyfdfhianddlqhgwcQRIKTEFTFEynyledeliv
Flexible Loop (DISEMBL)
mgrgglssqpsssiplssatavpsngNLGAVPLVSDVAKRNILGaeerlgssgmVQSLVSPLSNRMILSQAAkgndgtgsidsnnagETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPqqpqnlpeestpesaSSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgvIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Low Complexity Region (SEG)
MGRGGlssqpsssiplssATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFlqrlqqvqqqGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVeepqqpqnlpeestpesasspGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Disordered region (IsUnstruct)
********************************LVSDV******************************************************************************************************************************************************************************************************************************************************************************************************************************************************VQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE***
Disordered Region (DISOPRED)
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQ**************GTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI*
Disordered Region (DISEMBL)
********************AVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV******************************VSHLKV**********************LGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDT****************LGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Disordered Region (DISPRO)
**************************************************S*GM***********************************VAMAGRVFTPSMGMQWRTGNSF*********RG*TEIAPDQREKFLQRLQQVQQQGHSNLLGM*************P***************************************************************************************************************************************************RSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED*L**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	494	2.2.26 [Sep-21-2011]
Q8K0V4	751	CCR4-NOT transcription co	yes	no	0.283	0.186	0.542	5e-43
O75175	753	CCR4-NOT transcription co	yes	no	0.283	0.185	0.542	6e-43
O13870	640	General negative regulato	yes	no	0.325	0.251	0.416	1e-33
Q52JK6	603	Probable NOT transcriptio	N/A	no	0.378	0.310	0.268	2e-11
Q9NZN8	540	CCR4-NOT transcription co	no	no	0.228	0.209	0.310	1e-10
Q8C5L3	540	CCR4-NOT transcription co	no	no	0.228	0.209	0.310	1e-10
Q9FPW4	614	Probable NOT transcriptio	no	no	0.149	0.120	0.364	6e-08
P06100	191	General negative regulato	yes	no	0.255	0.659	0.329	3e-07
P87240	306	General negative regulato	no	no	0.202	0.326	0.3	1e-06
Q94547	585	Regulator of gene activit	no	no	0.161	0.136	0.333	3e-05

>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1

 Score =  176 bits (445), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
           +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query: 398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
              T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query: 458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
           +YFD+          W QR K  FTFEY YLED
Sbjct: 723 IYFDY--------EKWGQRKKEGFTFEYRYLED 747

The CCR4-NOT complex functions as general transcription regulation complex.
Mus musculus (taxid: 10090)

>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1

 Score =  175 bits (444), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
           +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667

Query: 398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
              T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724

Query: 458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
           +YFD+          W QR K  FTFEY YLED
Sbjct: 725 IYFDY--------EKWGQRKKEGFTFEYRYLED 749

The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 12/173 (6%)

Query: 319 LGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYP 378
           L  + ++L+ +     G  D+    + L  +   +P   D+ + + YIP+ P   P  YP
Sbjct: 475 LKDLVNALNTSKEQHKGAIDKEKLTEALNISCVYVPDATDAAKPQYYIPKDPYPVPHYYP 534

Query: 379 QVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW 438
           Q   P+  +    E +       DTLF+ FYY+  TYQQY+A +ELKKQSWR+H+KY TW
Sbjct: 535 QQPLPLFDSSEMTELV-----DPDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTW 589

Query: 439 FQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 491
           FQRHEEPK+  DEFE G+Y YFDF       +  W QR K +F F Y YLED+
Sbjct: 590 FQRHEEPKMITDEFESGSYRYFDF-------EGDWVQRKKADFRFTYQYLEDD 635

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 25/212 (11%)

Query: 285 AQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQ 344
            Q  RD  L   Q   +  P G LG++    +SD      +L G  +++ G+     N+ 
Sbjct: 412 GQPFRDQSLKSMQSQVAPDPFGMLGLLSVIRMSDPDLTSLAL-GIDLTTLGL-----NLN 465

Query: 345 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTL 404
             E+ +     P   E A+      P  T P     + P   N A++ +  LD     TL
Sbjct: 466 SAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD-----TL 516

Query: 405 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVYFDF 462
           F+ FY       Q  AA EL  + W YHR++  WF R  + EP V  + +E+G+Y+ FD 
Sbjct: 517 FYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFD- 575

Query: 463 HIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 494
                   + W    K  F      LE   ++
Sbjct: 576 -------PNTWETIHKDNFVLHCEMLEKRPVL 600

Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.

Nicotiana benthamiana (taxid: 4100)

>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 370 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 421
           P  + P  PQ     V +  ++N    ++L+   L  YG D LF+ +Y       Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461

Query: 422 KELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 479
            EL  + WRYH++   W  R    EP +  + +E+GTY +FD           W +++  
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512

Query: 480 EFTFEYNYLEDE 491
           EF  EY+ LE+ 
Sbjct: 513 EFHLEYDKLEER 524

The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 370 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 421
           P  + P  PQ     V +  ++N    ++L+   L  YG D LF+ +Y       Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461

Query: 422 KELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 479
            EL  + WRYH++   W  R    EP +  + +E+GTY +FD           W +++  
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512

Query: 480 EFTFEYNYLEDE 491
           EF  EY+ LE+ 
Sbjct: 513 EFHLEYDKLEER 524

The CCR4-NOT complex functions as general transcription regulation complex.

Mus musculus (taxid: 10090)

>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 36/74 (48%)

Query: 388 PAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKV 447
           P    R S   +  + LF+ FY       Q  AA EL ++ W YH++   WF R  EP V
Sbjct: 513 PPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLV 572

Query: 448 ANDEFEQGTYVYFD 461
               +E+GTY Y D
Sbjct: 573 RAATYERGTYEYLD 586

Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 44/170 (25%)

Query: 346 LESAFYKLPQPKDS--------------ERARSYI-PRHPAVTPPSY---PQVQAPIVSN 387
           L S  Y L  P+DS              E +RS + PR    TP S+   P V    V+ 
Sbjct: 34  LSSMLYSLGIPRDSQDHRVLDTFQSPWAETSRSEVEPRF--FTPESFTNIPGVLQSTVTP 91

Query: 388 PAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR 441
           P F       +R++L  +  +TLFF FY    T  Q L   EL+K++WRYH+    W  +
Sbjct: 92  PCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTK 149

Query: 442 H--EEPKVANDEF-EQGTYVYFDFHIANDDLQHGW--CQRIKTEFTFEYN 486
               EP V+ D   E+G+YV+FD           W  CQR   +F   YN
Sbjct: 150 DPMMEPIVSADGLSERGSYVFFD--------PQRWEKCQR---DFLLFYN 188

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. NOT2 is required for the integrity of the complex. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 20/120 (16%)

Query: 374 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 433
           P  Y  V  P   +  F        +  +TLF+ FY       Q  AA+EL  ++WR+H+
Sbjct: 196 PACYKNVNPPPAISKIF-------QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248

Query: 434 KYNTWFQRHE--EPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 490
           +   W       +P     +FE+G Y++FD  H         W +RIK +F   Y  LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298

Acts as component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover. NOT2 is required for the integrity of the complex. The NOT protein subcomplex negatively regulates the basal and activated transcription of many genes. Preferentially affects TC-type TATA element-dependent transcription. Could directly or indirectly inhibit component(s) of the general transcription machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2 SV=2

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 16/96 (16%)

Query: 373 TPPSYPQVQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 429
            PP Y       + N A  ++L+   L     D LFF FY       Q +AA EL  + W
Sbjct: 466 VPPEY-------LINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREW 518

Query: 430 RYHRKYNTWFQRHEEPKV----ANDEFEQGTYVYFD 461
           RYH +   W  R   P +     N   E+GT+ YFD
Sbjct: 519 RYHVEEKIWITRI--PGIDQYEKNGTKERGTFYYFD 552

Essential for viability. Acts as a suppressor of position effect variegation (PEV) at the white locus and regulates the expression of several unrelated genes.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	494
255568948	889	conserved hypothetical protein [Ricinus	0.987	0.548	0.755	0.0
297739742	897	unnamed protein product [Vitis vinifera]	0.997	0.549	0.782	0.0
359481840	888	PREDICTED: uncharacterized protein LOC10	0.985	0.548	0.77	0.0
224125888	886	predicted protein [Populus trichocarpa]	0.973	0.542	0.751	0.0
356560386	884	PREDICTED: uncharacterized protein LOC10	0.973	0.544	0.696	0.0
449446768	900	PREDICTED: uncharacterized protein LOC10	0.995	0.546	0.693	0.0
356559538	892	PREDICTED: uncharacterized protein LOC10	0.991	0.549	0.67	0.0
356571684	882	PREDICTED: uncharacterized protein LOC10	0.967	0.541	0.677	0.0
224144772	895	predicted protein [Populus trichocarpa]	0.981	0.541	0.716	1e-177
357508635	901	CCR4-NOT transcription complex subunit [	0.983	0.539	0.686	1e-171

>gi|255568948|ref|XP_002525444.1| conserved hypothetical protein [Ricinus communis] gi|223535257|gb|EEF36934.1| conserved hypothetical protein [Ricinus communis]

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/498 (75%), Positives = 424/498 (85%), Gaps = 10/498 (2%)

Query: 1   MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVS 60
           +GRG + SQP SSIPLSS  AVPSNG +GAVP  SD+AKRNIL  ++RLGS GMVQ L S
Sbjct: 398 IGRGAIYSQPPSSIPLSSG-AVPSNGAVGAVPTASDIAKRNILSTDDRLGSGGMVQPLAS 456

Query: 61  PLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM-GMQWRTGNSFQNQNEPGQ 119
           PLSNRMIL QA K  DGTG +DSNN GE  A+ GRVF+P + GMQWR G+SFQNQNE GQ
Sbjct: 457 PLSNRMILPQAGKVGDGTGIVDSNNVGEAAAIGGRVFSPLVPGMQWRPGSSFQNQNEQGQ 516

Query: 120 FRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQNPLLQQFNSQGS 176
           FR RTEI PDQREKFLQR QQVQQQG + LLGMP   GGN KQFS+QQN LLQQFNSQ S
Sbjct: 517 FRARTEITPDQREKFLQRFQQVQQQGPNTLLGMPPLAGGNHKQFSAQQNSLLQQFNSQSS 576

Query: 177 SISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQ 236
           S+S QA LGLG QAPG+N++TSA+LQ  PN + QQS+QQ +MS   KDAD+   KVEE Q
Sbjct: 577 SVS-QATLGLGSQAPGINAITSAALQP-PNTLLQQSTQQVVMS---KDADIGLSKVEEQQ 631

Query: 237 QPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPG 296
           QPQNLP++S  ESA   GL KNL++ED+LK PY +D+ TG S +L EP Q+ RDTDLSPG
Sbjct: 632 QPQNLPDDSIAESAPMSGLSKNLMNEDELKTPYTMDTPTGASGTLAEPVQLPRDTDLSPG 691

Query: 297 QPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQP 356
           QP+QSSQPS GLGVIGRRSVSDLGAIGD+L G+ V+SG MHDQ+YN+QMLE+A+++LPQP
Sbjct: 692 QPIQSSQPSTGLGVIGRRSVSDLGAIGDNLGGSAVNSGAMHDQLYNLQMLEAAYHRLPQP 751

Query: 357 KDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQ 416
           KDSERARSY PRHP  TPPSYPQVQAPIV+NPAFWERL++DSYGTDTLFFAFYYQQNT+Q
Sbjct: 752 KDSERARSYTPRHPTATPPSYPQVQAPIVNNPAFWERLTIDSYGTDTLFFAFYYQQNTHQ 811

Query: 417 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQR 476
           QYLAAKELKKQSWRYHRKYNTWFQRHEEPK+A DE+EQGTYVYFDFHIANDDLQHGWCQR
Sbjct: 812 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKIATDEYEQGTYVYFDFHIANDDLQHGWCQR 871

Query: 477 IKTEFTFEYNYLEDELIV 494
           IKTEFTFEYNYLEDEL+V
Sbjct: 872 IKTEFTFEYNYLEDELLV 889

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739742|emb|CBI29924.3| unnamed protein product [Vitis vinifera]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/500 (78%), Positives = 440/500 (88%), Gaps = 7/500 (1%)

Query: 1   MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVS 60
           +GRG  SSQPS+S+PLSS   +PSNG LGAVP  +D++KR+ LGA+ERLG  GMVQ LVS
Sbjct: 399 IGRGVPSSQPSTSVPLSSGITIPSNGGLGAVPSANDMSKRSTLGADERLGGGGMVQPLVS 458

Query: 61  PLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPG 118
           PLSNRMIL Q AK NDGTG  DS++ GE   +AGRVF+PS+  GMQWR G+SFQNQNE G
Sbjct: 459 PLSNRMILPQTAKTNDGTGLADSSSVGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNESG 518

Query: 119 QFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQ 174
           QFRGRTEI  DQ+EKFLQRLQQVQQQ  S +LGMP   GGN KQFS+QQ NPLLQQFNSQ
Sbjct: 519 QFRGRTEITLDQKEKFLQRLQQVQQQTQSTILGMPPLSGGNHKQFSAQQQNPLLQQFNSQ 578

Query: 175 GSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEE 234
            SS+S Q GLG+GVQAPG+N+VTSA++QQQP  IHQQS+QQ L+S G KDADV H+K E+
Sbjct: 579 SSSVSPQVGLGVGVQAPGLNTVTSAAIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAED 638

Query: 235 PQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLS 294
            QQ QN+ ++ST ESA S  LGKNL++EDDLKAPYA+D+S GVS SLTEP+QV RDTDLS
Sbjct: 639 QQQQQNVSDDSTMESAPS-SLGKNLMNEDDLKAPYAMDTSAGVSGSLTEPSQVPRDTDLS 697

Query: 295 PGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLP 354
           PGQP+QS+QPSG LGVIGRRS+SDLGAIGD+LSG+ V+SGGMHDQ+YN+QMLE+AFYKLP
Sbjct: 698 PGQPVQSNQPSGSLGVIGRRSISDLGAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLP 757

Query: 355 QPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNT 414
           QPKDSERAR+Y PRHPAVTPPSYPQVQAPIV+NPAFWERL LD++GTDTLFFAFYYQQNT
Sbjct: 758 QPKDSERARNYTPRHPAVTPPSYPQVQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNT 817

Query: 415 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWC 474
           YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVA DEFEQGTYVYFDFHIANDDLQHGWC
Sbjct: 818 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWC 877

Query: 475 QRIKTEFTFEYNYLEDELIV 494
           QRIKTEFTFEYNYLEDELIV
Sbjct: 878 QRIKTEFTFEYNYLEDELIV 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481840|ref|XP_003632676.1| PREDICTED: uncharacterized protein LOC100253711 [Vitis vinifera]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/500 (77%), Positives = 434/500 (86%), Gaps = 13/500 (2%)

Query: 1   MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVS 60
           +GRG  SSQPS+S+PLSS   +PSNG LGAVP  +D++KR+ LGA+ERLG  GMVQ LVS
Sbjct: 396 IGRGVPSSQPSTSVPLSSGITIPSNGGLGAVPSANDMSKRSTLGADERLGGGGMVQPLVS 455

Query: 61  PLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPG 118
           PLSNRMIL Q AK NDGTG  DS++ GE   +AGRVF+PS+  GMQWR G+SFQNQNE  
Sbjct: 456 PLSNRMILPQTAKTNDGTGLADSSSVGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNE-- 513

Query: 119 QFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQ 174
            FRGRTEI  DQ+EKFLQRLQQVQQQ  S +LGMP   GGN KQFS+QQ NPLLQQ    
Sbjct: 514 SFRGRTEITLDQKEKFLQRLQQVQQQTQSTILGMPPLSGGNHKQFSAQQQNPLLQQV--- 570

Query: 175 GSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEE 234
            SS+S Q GLG+GVQAPG+N+VTSA++QQQP  IHQQS+QQ L+S G KDADV H+K E+
Sbjct: 571 -SSVSPQVGLGVGVQAPGLNTVTSAAIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAED 629

Query: 235 PQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLS 294
            QQ QN+ ++ST ESA S  LGKNL++EDDLKAPYA+D+S GVS SLTEP+QV RDTDLS
Sbjct: 630 QQQQQNVSDDSTMESAPS-SLGKNLMNEDDLKAPYAMDTSAGVSGSLTEPSQVPRDTDLS 688

Query: 295 PGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLP 354
           PGQP+QS+QPSG LGVIGRRS+SDLGAIGD+LSG+ V+SGGMHDQ+YN+QMLE+AFYKLP
Sbjct: 689 PGQPVQSNQPSGSLGVIGRRSISDLGAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLP 748

Query: 355 QPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNT 414
           QPKDSERAR+Y PRHPAVTPPSYPQVQAPIV+NPAFWERL LD++GTDTLFFAFYYQQNT
Sbjct: 749 QPKDSERARNYTPRHPAVTPPSYPQVQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNT 808

Query: 415 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWC 474
           YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVA DEFEQGTYVYFDFHIANDDLQHGWC
Sbjct: 809 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWC 868

Query: 475 QRIKTEFTFEYNYLEDELIV 494
           QRIKTEFTFEYNYLEDELIV
Sbjct: 869 QRIKTEFTFEYNYLEDELIV 888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125888|ref|XP_002319700.1| predicted protein [Populus trichocarpa] gi|222858076|gb|EEE95623.1| predicted protein [Populus trichocarpa]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/498 (75%), Positives = 424/498 (85%), Gaps = 17/498 (3%)

Query: 1   MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVS 60
           +GRGGLSSQPSSSIPLS    +PSNG  G+VPL SD+AKRNILG ++R+GS+GMVQ L S
Sbjct: 402 IGRGGLSSQPSSSIPLS-PVVIPSNGAHGSVPLASDIAKRNILGNDDRIGSAGMVQPLAS 460

Query: 61  PLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM-GMQWRTGNSFQNQNEPGQ 119
           PLSNRMIL QA    DGT ++D+++AGE   M GRVF+P + GMQWR G+SFQNQNEPGQ
Sbjct: 461 PLSNRMILPQAG---DGTSAVDTSSAGEAATMGGRVFSPLVTGMQWRPGSSFQNQNEPGQ 517

Query: 120 FRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQNPLLQQFNSQGS 176
           FR RTEIAPDQREKFLQRLQQVQQQGHSN+LGMP   GGN KQ+S+QQNPLLQQ  +  S
Sbjct: 518 FRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLTGGNHKQYSAQQNPLLQQ-FNSQS 576

Query: 177 SISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQ 236
           S  +QA LGLGVQA G N+VTSA+LQQ PN IHQQSSQQ +MS G KDA      V+E Q
Sbjct: 577 SSVSQASLGLGVQASGFNTVTSAALQQ-PNSIHQQSSQQVVMSSGAKDA------VDEQQ 629

Query: 237 QPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPG 296
             QNLPE+ST +SA + GLGK+L++ED+L +PYA+D+S G S SLTEP QV RD DLSPG
Sbjct: 630 LKQNLPEDSTTKSALTSGLGKSLVNEDELTSPYAMDTSAGASGSLTEPLQVPRDIDLSPG 689

Query: 297 QPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQP 356
           Q LQSSQPS GLGVIGRRSVSDLGAIGD+L+G+ V+SG MH+Q+YN+QMLE+A++KLPQP
Sbjct: 690 QLLQSSQPSSGLGVIGRRSVSDLGAIGDNLTGSAVNSGAMHNQLYNLQMLEAAYHKLPQP 749

Query: 357 KDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQ 416
           KDSERARSYIPRHPA TPPSYPQVQ P+ SNPAFWERLS+ SYGTDTLFFAFYYQQNTYQ
Sbjct: 750 KDSERARSYIPRHPAATPPSYPQVQLPMASNPAFWERLSMHSYGTDTLFFAFYYQQNTYQ 809

Query: 417 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQR 476
           QYLAAKELKKQSWRYHRKYNTWFQRHEEPKV  DE+EQGTYVYFDFH+ N+D Q GWCQR
Sbjct: 810 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVTTDEYEQGTYVYFDFHVGNEDKQ-GWCQR 868

Query: 477 IKTEFTFEYNYLEDELIV 494
           IKTEFTFEYNYLEDELIV
Sbjct: 869 IKTEFTFEYNYLEDELIV 886

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560386|ref|XP_003548473.1| PREDICTED: uncharacterized protein LOC100783415 [Glycine max]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/498 (69%), Positives = 408/498 (81%), Gaps = 17/498 (3%)

Query: 3   RGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPL 62
           R  LS+Q ++S+PL S   V SN  LG+V   S++AKRNI+GA++RLGSSGMVQ LVSPL
Sbjct: 398 RNSLSNQATASVPLGSGNMVSSNVALGSVSSASEIAKRNIMGADDRLGSSGMVQPLVSPL 457

Query: 63  SNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPS--MGMQWRTGNSFQNQNEPGQF 120
           SNR+IL QAAK NDG  S+DS+   E  A AGRVF+PS   GMQWR G+ FQNQN+    
Sbjct: 458 SNRLILPQAAKANDGIVSVDSSTVNE--AAAGRVFSPSGVPGMQWRPGSPFQNQND--AL 513

Query: 121 RGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQGS 176
           RGRTEIAPDQREKFLQ+ QQVQQ GHS LL MP  +GGN KQFS+QQ NPLLQQFNS GS
Sbjct: 514 RGRTEIAPDQREKFLQKYQQVQQ-GHSTLLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGS 572

Query: 177 SISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQ 236
           S+S+Q+G+GLGVQ+  +  ++SASLQQ PNP+H  SSQQ LM       DV + K+EE Q
Sbjct: 573 SVSSQSGIGLGVQSTSLGGISSASLQQPPNPVHSPSSQQPLM------PDVGNSKIEEQQ 626

Query: 237 QPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPG 296
           Q QN P++ST ES +S G+GKNLI+EDD K+ Y +DS   VSASL E AQ  RD DLSPG
Sbjct: 627 QHQNFPDDSTIESIASTGIGKNLINEDDSKSAYTVDSPAAVSASLPESAQTSRDIDLSPG 686

Query: 297 QPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQP 356
           QPLQS+Q +G LGVIGRR+ ++ GAIGD+ SG+ VSSGG+ DQ+YN+QMLE+A +K+P P
Sbjct: 687 QPLQSNQLTGNLGVIGRRNGAEHGAIGDNFSGSNVSSGGVRDQLYNLQMLEAAHFKIPLP 746

Query: 357 KDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQ 416
           KDSER R+Y P+HPA+TPPSYPQVQAPIV+NPAFWER+ L+ +GTDTLFFAFYYQQNTYQ
Sbjct: 747 KDSERPRTYTPKHPAITPPSYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQ 806

Query: 417 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQR 476
           QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVA DE+EQGTYVYFDFHIANDD+QHGWCQR
Sbjct: 807 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDMQHGWCQR 866

Query: 477 IKTEFTFEYNYLEDELIV 494
           IKTEFTFEYNYLED+L+V
Sbjct: 867 IKTEFTFEYNYLEDDLLV 884

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446768|ref|XP_004141143.1| PREDICTED: uncharacterized protein LOC101206210 [Cucumis sativus] gi|449509538|ref|XP_004163617.1| PREDICTED: uncharacterized LOC101206210 [Cucumis sativus]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/503 (69%), Positives = 404/503 (80%), Gaps = 11/503 (2%)

Query: 1   MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVS 60
           MGRG +++QP S+   +S   VPSN  LG V   S+V KRNI+G EER GS G+VQS+VS
Sbjct: 400 MGRGVIANQPPSTSSHTSGIVVPSNITLGNVSSASEVTKRNIMGVEERAGS-GIVQSVVS 458

Query: 61  PLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPG 118
           PLSNR+ L   AK +DGT  +D  +  +  A+ GRVF+P++   MQWR G+SFQN NE G
Sbjct: 459 PLSNRLALPTTAKVSDGTTMVDPTSVSDAAAIGGRVFSPTVVSSMQWRPGSSFQNPNEGG 518

Query: 119 QFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQ---FSSQQNPLLQQFNSQG 175
           QFRGR EIAPDQREKFLQRLQQVQQQGHS LLGM LGG       S QQ+ LLQQFNSQ 
Sbjct: 519 QFRGRAEIAPDQREKFLQRLQQVQQQGHSTLLGMTLGGGNHKQFSSQQQSSLLQQFNSQN 578

Query: 176 SSISAQAGLGLGVQAPGMN--SVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVE 233
           SS+S+QAGLG+GVQAPG+N  +VTS SLQQQPN   QQS+QQ L + G KD+DV H KVE
Sbjct: 579 SSVSSQAGLGIGVQAPGVNPVAVTSGSLQQQPNSF-QQSNQQALTTSGAKDSDVVHSKVE 637

Query: 234 EPQQPQNLPE--ESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDT 291
           E QQ Q      E T +SA+   LGKNL+ +DDLK  Y +D+  G++ASLTE A V R+ 
Sbjct: 638 EEQQQQQQQSLLEDTTDSAAVSVLGKNLMSDDDLKGSYTVDTPVGITASLTETASVTRED 697

Query: 292 DLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFY 351
           DLSPGQPLQ  QPSGGLGVIGRRSVSDLGAIGD+L G+++++GGMHDQ YN+QMLE+AFY
Sbjct: 698 DLSPGQPLQPGQPSGGLGVIGRRSVSDLGAIGDNLGGSSMTTGGMHDQFYNLQMLEAAFY 757

Query: 352 KLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQ 411
           KLPQPKDSER RSY PRHPA+TPPSYPQVQAPI++NPA W+RL L++YGTDTLFFAFYYQ
Sbjct: 758 KLPQPKDSERPRSYTPRHPAITPPSYPQVQAPIINNPALWDRLGLETYGTDTLFFAFYYQ 817

Query: 412 QNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQH 471
            NTYQQYLAA+ELKKQSWRYHRKY TWFQRHEEPKVA DE+EQGTYVYFDFH+ NDDLQH
Sbjct: 818 PNTYQQYLAARELKKQSWRYHRKYQTWFQRHEEPKVATDEYEQGTYVYFDFHVNNDDLQH 877

Query: 472 GWCQRIKTEFTFEYNYLEDELIV 494
           GWCQRIKTEFTFEYNYLEDEL +
Sbjct: 878 GWCQRIKTEFTFEYNYLEDELNI 900

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559538|ref|XP_003548056.1| PREDICTED: uncharacterized protein LOC100819202 [Glycine max]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/500 (67%), Positives = 409/500 (81%), Gaps = 10/500 (2%)

Query: 1   MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVS 60
           + R  +S+Q ++SIPL+S   V SNG LG+VP   ++ KRNIL  ++RLGS+GMVQ LVS
Sbjct: 397 ISRNSVSNQATNSIPLASGNMVSSNGPLGSVPSAPEITKRNILVGDDRLGSNGMVQPLVS 456

Query: 61  PLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPG 118
           PLSNRMI+ Q A+ NDGT S+DS++  E   ++GRVF+PS   GMQWR+G+ FQNQN+  
Sbjct: 457 PLSNRMIMPQVARPNDGTSSVDSSSVNEAATVSGRVFSPSAVPGMQWRSGSPFQNQND-- 514

Query: 119 QFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQ-NPLLQQFNSQ 174
             RGRTEIAPDQRE++LQ+LQQVQQQG S +L MP  + GN KQFS+QQ NPLLQQFNSQ
Sbjct: 515 VVRGRTEIAPDQRERYLQKLQQVQQQGQSAILNMPSFVAGNPKQFSAQQQNPLLQQFNSQ 574

Query: 175 GSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEE 234
           GSS+++Q+G+GLGVQ+PG++ + S SL Q PN +H  SSQQ+L+    KDADV + K +E
Sbjct: 575 GSSVASQSGVGLGVQSPGLSGIASTSLPQPPNSVHSPSSQQSLLLVVSKDADVGNSKGDE 634

Query: 235 PQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLS 294
           PQQ Q  P++S  ES +S G+GKN ++ED+LK+ YA+DS  GV ASL EPAQ  RD DLS
Sbjct: 635 PQQ-QIFPDDSGTESTASNGIGKNFVNEDELKSTYAVDSPAGVPASLPEPAQTSRDIDLS 693

Query: 295 PGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLP 354
           PG PLQS+Q +G LGVIGR S +DLGA+GD+ S +T +SGG+ DQ+Y +QMLE+A  KLP
Sbjct: 694 PGLPLQSNQRTGNLGVIGRSS-TDLGALGDNFSASTANSGGVRDQLYYLQMLEAAHLKLP 752

Query: 355 QPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNT 414
           QPKDSER R+Y P+HP +TPPS+PQVQAPIV+NPAFWER+ ++ YGTDTLFFAFYYQQNT
Sbjct: 753 QPKDSERPRTYTPKHPTITPPSFPQVQAPIVNNPAFWERVGIEQYGTDTLFFAFYYQQNT 812

Query: 415 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWC 474
           YQQY+AAKELKKQSWRYHRKYNTWFQRHEEPKVA DE+EQGTYVYFDFHIANDDLQHGWC
Sbjct: 813 YQQYMAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWC 872

Query: 475 QRIKTEFTFEYNYLEDELIV 494
           QRIKT+FTFEYNYLEDE IV
Sbjct: 873 QRIKTDFTFEYNYLEDEPIV 892

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571684|ref|XP_003554004.1| PREDICTED: uncharacterized protein LOC100785965 [Glycine max]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/505 (67%), Positives = 404/505 (80%), Gaps = 27/505 (5%)

Query: 2   GRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSP 61
           GR  LS+Q ++SIPL S   V SNG LG+V   S++AKRNILGA++RLGSSGMVQ LVSP
Sbjct: 393 GRSSLSNQATASIPLGSGNMVSSNGALGSVSSASEIAKRNILGADDRLGSSGMVQPLVSP 452

Query: 62  LSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPS--MGMQWRTGNSFQNQNEPGQ 119
           LSNR+IL QAAK NDGT  +DS+   E  A +GRVF+PS   GMQWR G+ FQNQN+   
Sbjct: 453 LSNRLILPQAAKANDGTVLVDSSTVNE--AASGRVFSPSGVPGMQWRPGSPFQNQND--A 508

Query: 120 FRGRTEIAPDQREKFLQRLQQVQQ------QGHSNLLGMP--LGGN-KQFSSQQ-NPLLQ 169
            RGRTEIAPDQREKFLQ+ QQVQQ        +S LL MP  +GGN KQFS+QQ NPLLQ
Sbjct: 509 LRGRTEIAPDQREKFLQKYQQVQQGNSTLLNMNSTLLNMPSLVGGNHKQFSAQQQNPLLQ 568

Query: 170 QFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSH 229
           Q           +G+GLGVQ+  +  ++SASLQQ PNP+H  SSQQ LM G   DADV +
Sbjct: 569 Q-----------SGIGLGVQSTSLVGISSASLQQPPNPVHSPSSQQPLMPGVSIDADVGN 617

Query: 230 LKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVR 289
            K+EE QQ QN P++ST ES +S G+GKNLI+EDD K+ +A+DS  GVSASL E AQ  R
Sbjct: 618 SKIEEQQQHQNFPDDSTTESTASTGIGKNLINEDDSKSAFALDSPAGVSASLPESAQTSR 677

Query: 290 DTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESA 349
           D DLSPGQPLQ +QP+G LGVIGRR+ ++ GAIGD+ SG++VSSGG+ DQ+YN+QMLE+A
Sbjct: 678 DIDLSPGQPLQPNQPTGNLGVIGRRNGAEHGAIGDNFSGSSVSSGGVRDQLYNLQMLEAA 737

Query: 350 FYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFY 409
            +K+P PKDSER R+Y P+HP +TPPSYPQVQAPIV+NPAFWER+ L+ +GTDTLFFAFY
Sbjct: 738 HFKIPLPKDSERPRTYTPKHPTITPPSYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFY 797

Query: 410 YQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDL 469
           YQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK+A DE+EQGTYVYFDFHIANDD+
Sbjct: 798 YQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIATDEYEQGTYVYFDFHIANDDM 857

Query: 470 QHGWCQRIKTEFTFEYNYLEDELIV 494
           QHGWCQRIKTEFTFEYNYLED+L+V
Sbjct: 858 QHGWCQRIKTEFTFEYNYLEDDLLV 882

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144772|ref|XP_002325409.1| predicted protein [Populus trichocarpa] gi|222862284|gb|EEE99790.1| predicted protein [Populus trichocarpa]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 357/498 (71%), Positives = 418/498 (83%), Gaps = 13/498 (2%)

Query: 1   MGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVS 60
           +GRGGLSSQPSSSI LS    +PSNG LG+VP  SD+AKRN+LG ++RLGS GMVQ  VS
Sbjct: 407 IGRGGLSSQPSSSISLSPGV-IPSNGALGSVPSASDIAKRNVLGTDDRLGSGGMVQPSVS 465

Query: 61  PLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM-GMQWRTGNSFQNQNEPGQ 119
           PLSNRM+L  A+K +DGTG++DS+NAG+   ++GRVF+P + GMQWR G+SFQ+QNEPGQ
Sbjct: 466 PLSNRMMLPHASKASDGTGAVDSSNAGDAATLSGRVFSPLVTGMQWRPGSSFQSQNEPGQ 525

Query: 120 FRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP---LGGNKQFSSQQNPLLQQFNSQGS 176
           FR RTEIAPDQREKFLQRLQQVQQQGHSN+LGMP    G +KQF +QQNPLLQQ  +  S
Sbjct: 526 FRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLASGNHKQFPTQQNPLLQQ-FNSQS 584

Query: 177 SISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQ 236
           S  +Q  LG+GVQA G N+ TSA+LQQ PN IHQQ++QQ +MS     ++V H  VEE Q
Sbjct: 585 SSISQGSLGIGVQAAGFNTATSAALQQ-PNSIHQQANQQVVMS-----SEVGHPSVEEQQ 638

Query: 237 QPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPG 296
             QNLPE+S+ ESA + GLGK+L++ED+L A YA+D+S G S SLTE  QV RD DLSPG
Sbjct: 639 LKQNLPEDSSTESAPTSGLGKSLVNEDELTASYAMDTSAGASGSLTESVQVPRDIDLSPG 698

Query: 297 QPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQP 356
           QPLQSSQPS  LGVIGRRSVSDLGAIGD+++G+ +++G MH+Q YN +ML++A++KLPQP
Sbjct: 699 QPLQSSQPSSSLGVIGRRSVSDLGAIGDNINGSAINAGAMHNQSYNFEMLDAAYHKLPQP 758

Query: 357 KDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQ 416
           KDSERARSYIPRHPA TPPSYPQVQAP+ SNPAFWERLS+DS GTDTLFFAFYYQQNTYQ
Sbjct: 759 KDSERARSYIPRHPAATPPSYPQVQAPMASNPAFWERLSMDSVGTDTLFFAFYYQQNTYQ 818

Query: 417 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQR 476
           QYLAAKELKKQSWRYHRKYNTWFQRHEEPKV  DE+EQGTYVYFDFH+ N+D Q GWCQR
Sbjct: 819 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVTTDEYEQGTYVYFDFHVGNEDKQ-GWCQR 877

Query: 477 IKTEFTFEYNYLEDELIV 494
           IKTEFTF+YNYLEDEL V
Sbjct: 878 IKTEFTFQYNYLEDELSV 895

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508635|ref|XP_003624606.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|124365585|gb|ABN09819.1| Not CCR4-Not complex component, N-terminal; tRNA-binding arm [Medicago truncatula] gi|355499621|gb|AES80824.1| CCR4-NOT transcription complex subunit [Medicago truncatula]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 342/498 (68%), Positives = 399/498 (80%), Gaps = 12/498 (2%)

Query: 2   GRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSP 61
           GR  LS+Q ++SIPL S   V S G LG VP  S++ KRNILGA++RLGSSGMVQ LVSP
Sbjct: 410 GRNSLSNQATASIPLGSGNTVSSIGALGVVPSASEITKRNILGADDRLGSSGMVQPLVSP 469

Query: 62  LSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQ 119
           LSNR+IL Q  K NDG  S+DS+   E  A++GRVF+PS+  GMQWR G+ FQNQN+ GQ
Sbjct: 470 LSNRLILPQIGKANDGAASVDSSIVNEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQ 529

Query: 120 FRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMP--LGGN-KQFSSQQNPLLQQ-FNSQG 175
            RGRTEIAPDQREKFLQ+ QQVQQQG S LL MP  +GGN KQFSSQQ   L Q FNSQG
Sbjct: 530 LRGRTEIAPDQREKFLQKFQQVQQQGPSTLLNMPSLVGGNHKQFSSQQQSPLLQQFNSQG 589

Query: 176 SSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEP 235
           SS+S+Q+ +GLG Q+P +  ++S SLQQ  N +H  S Q    +G  KDAD    K EE 
Sbjct: 590 SSVSSQSSMGLGAQSPSLGGISSVSLQQL-NSVHSPSGQHPF-AGVAKDAD----KFEEH 643

Query: 236 QQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSP 295
           QQ QN P+EST ES SS G+GKNL  EDDLK+ YA+DS  G+SASL E AQ  RD DLSP
Sbjct: 644 QQHQNFPDESTTESTSSTGIGKNLTVEDDLKSAYALDSPAGLSASLPEAAQTFRDIDLSP 703

Query: 296 GQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQ 355
           GQPLQS+Q +G LGVIGRR+  +LGAIGDS   ++V+SGG+ DQ+YN+QMLE+A +++PQ
Sbjct: 704 GQPLQSNQSTGNLGVIGRRNGVELGAIGDSFGASSVNSGGVRDQLYNLQMLEAAHFRMPQ 763

Query: 356 PKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTY 415
           P+DSER R+Y PRHPA+TP SYPQVQAPIV+NPAFWERL L+ +GTDTLFFAFYYQQNTY
Sbjct: 764 PRDSERPRTYTPRHPAITPSSYPQVQAPIVNNPAFWERLGLEPFGTDTLFFAFYYQQNTY 823

Query: 416 QQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQ 475
           QQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVA D++EQGTYVYFDFHIANDDLQHGWCQ
Sbjct: 824 QQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDDYEQGTYVYFDFHIANDDLQHGWCQ 883

Query: 476 RIKTEFTFEYNYLEDELI 493
           RIK +FTFEYNYLEDEL+
Sbjct: 884 RIKNDFTFEYNYLEDELV 901

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	494
TAIR|locus:2172389	845	AT5G18230 [Arabidopsis thalian	0.554	0.324	0.539	5.5e-77
FB|FBgn0033029	844	l(2)NC136 "lethal (2) NC136" [	0.281	0.164	0.549	1.6e-44
DICTYBASE|DDB_G0272056	866	DDB_G0272056 "putative CCR4-NO	0.291	0.166	0.528	2.2e-43
UNIPROTKB|F6XXD6	753	CNOT3 "Uncharacterized protein	0.283	0.185	0.542	6.8e-42
UNIPROTKB|O75175	753	CNOT3 "CCR4-NOT transcription	0.283	0.185	0.542	6.8e-42
UNIPROTKB|E2R344	710	CNOT3 "Uncharacterized protein	0.281	0.195	0.535	1e-41
UNIPROTKB|E1BCS1	744	CNOT3 "Uncharacterized protein	0.283	0.188	0.542	2e-41
MGI|MGI:2385261	751	Cnot3 "CCR4-NOT transcription	0.283	0.186	0.542	9.5e-41
RGD|1304771	751	Cnot3 "CCR4-NOT transcription	0.283	0.186	0.542	9.5e-41
ZFIN|ZDB-GENE-040927-6	901	cnot3a "CCR4-NOT transcription	0.283	0.155	0.522	3.1e-40

TAIR|locus:2172389 AT5G18230 [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 156/289 (53%), Positives = 189/289 (65%)

Query:   208 IHQQSSQQTLMSGGQKD-ADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLK 266
             + QQS+  +   G Q   ADV H++                         K +  EDD K
Sbjct:   570 LQQQSNAMSQQLGQQPSVADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSK 623

Query:   267 APYAIDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGDSL 326
               +  D+ +G+ + + +P QV    D                 VIGRRS S+LGAIGD  
Sbjct:   624 VLF--DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGDP- 680

Query:   327 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS 386
               + V  G MHDQM+N+QMLE+AFYK PQP DSER R Y PR+PA+TP ++PQ QAPI++
Sbjct:   681 --SAV--GPMHDQMHNLQMLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIIN 736

Query:   387 NPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK 446
             NP  WERL  D+YGTDTLFFAFYYQQN+YQQYLAAKELKKQSWRYHRK+NTWFQRH+EPK
Sbjct:   737 NPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPK 796

Query:   447 VANDEFEQGTYVYFDFHIANDDLQHG-WCQRIKTEFTFEYNYLEDELIV 494
             +A DE+EQG YVYFDF    D+ Q G WCQRIK EFTFEY+YLEDEL+V
Sbjct:   797 IATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLEDELVV 845

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)]

 Score = 440 (159.9 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
 Identities = 84/153 (54%), Positives = 104/153 (67%)

Query:   339 QMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDS 398
             QM   QM+E+A+Y LPQP D+E+ ++Y  R P +TP  YPQ Q PI     F++RLS   
Sbjct:   703 QM-QFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDTVEFYQRLS--- 758

Query:   399 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYV 458
               T+TLFF FYY + +  QYLAAK LKKQSWR+H KY  WFQRHEEPK+ ND++EQGTY+
Sbjct:   759 --TETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINDDYEQGTYI 816

Query:   459 YFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 491
             YFD+          W QR K  FTFEY YLED+
Sbjct:   817 YFDYE--------KWSQRKKEGFTFEYKYLEDK 841

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0272056 DDB_G0272056 "putative CCR4-NOT complex subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 431 (156.8 bits), Expect = 2.2e-43, Sum P(2) = 2.2e-43
 Identities = 83/157 (52%), Positives = 104/157 (66%)

Query:   335 GMHDQMY-NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER 393
             G  + M     M++ +F  LP  KD ER  ++IPR+P   P  YPQ   P+  +P  +E+
Sbjct:   722 GFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEK 781

Query:   394 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFE 453
               +D     TLFF FY++Q TYQQY AAKELKKQ WRYH+KY TWF+RHEEPK   +EFE
Sbjct:   782 FDID-----TLFFIFYFKQGTYQQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFE 836

Query:   454 QGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
             QGTYVYFD+       + GWCQR KTEFTFEY +LE+
Sbjct:   837 QGTYVYFDY-------ETGWCQRKKTEFTFEYRFLEE 866

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 426 (155.0 bits), Expect = 6.8e-42, Sum P(2) = 6.8e-42
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667

Query:   398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724

Query:   458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
             +YFD+          W QR K  FTFEY YLED
Sbjct:   725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 6.8e-42, Sum P(2) = 6.8e-42
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667

Query:   398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724

Query:   458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
             +YFD+          W QR K  FTFEY YLED
Sbjct:   725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS

GO:2000036 "regulation of stem cell maintenance" evidence=IMP

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 412 (150.1 bits), Expect = 1.0e-41, Sum P(2) = 1.0e-41
 Identities = 82/153 (53%), Positives = 100/153 (65%)

Query:   338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
             +Q+Y   M E+A++ +P P DSER R++ PR+P  TPP + Q+  P      F++RLS  
Sbjct:   568 EQLYQQAMEEAAWHHMPHPSDSERIRTF-PRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 624

Query:   398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   625 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 681

Query:   458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
             +YFD+          W QR K  FTFEY YLED
Sbjct:   682 IYFDYE--------KWGQRKKEGFTFEYRYLED 706

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   601 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 658

Query:   398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   659 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 715

Query:   458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
             +YFD+          W QR K  FTFEY YLED
Sbjct:   716 IYFDYE--------KWGQRKKEGFTFEYRYLED 740

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)]

 Score = 426 (155.0 bits), Expect = 9.5e-41, Sum P(2) = 9.5e-41
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query:   398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query:   458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
             +YFD+          W QR K  FTFEY YLED
Sbjct:   723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:2000036 "regulation of stem cell maintenance" evidence=ISO

RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 9.5e-41, Sum P(2) = 9.5e-41
 Identities = 83/153 (54%), Positives = 100/153 (65%)

Query:   338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
             +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS  
Sbjct:   608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665

Query:   398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
                T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722

Query:   458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
             +YFD+          W QR K  FTFEY YLED
Sbjct:   723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)]

 Score = 402 (146.6 bits), Expect = 3.1e-40, Sum P(2) = 3.1e-40
 Identities = 80/153 (52%), Positives = 98/153 (64%)

Query:   338 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 397
             +Q+Y   M E+A+  +P P DSER R Y+ R+P  TPP + Q+      +  F++RLS  
Sbjct:   758 EQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTPPFHHQMPPHHSDSIEFYQRLS-- 815

Query:   398 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 457
                T+TLFF FYY + T  QYL+AK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY
Sbjct:   816 ---TETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 872

Query:   458 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 490
             +YFD+          W QR K  FTFEY YLED
Sbjct:   873 IYFDYE--------KWGQRKKEGFTFEYRYLED 897

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	494
pfam04153	131	pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family	8e-58
COG5665	548	COG5665, NOT5, CCR4-NOT transcriptional regulation	2e-34
COG5601	172	COG5601, CDC36, General negative regulator of tran	4e-16

>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family

 Score =  187 bits (477), Expect = 8e-58
 Identities = 66/146 (45%), Positives = 84/146 (57%), Gaps = 17/146 (11%)

Query: 346 LESAFYKLPQPKDS-ERARSY-IPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 403
           L  +F   P P D+ ER   Y IP     TP SYPQ   P   +P+ +++        +T
Sbjct: 1   LHPSFASPPSPSDARERPPQYDIPECYLNTPSSYPQNPPP--LSPSKFQKFD-----DET 53

Query: 404 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 463
           LF+ FYY     QQYLAAKELK + WRYH+KY TWF RHEEPKV  DE+E+G+Y+YFD  
Sbjct: 54  LFYIFYYMPGDLQQYLAAKELKNRGWRYHKKYQTWFTRHEEPKVITDEYERGSYIYFDPE 113

Query: 464 IANDDLQHGWCQRIKTEFTFEYNYLE 489
                    W +R K  FT +Y+ LE
Sbjct: 114 S--------WKKRRKENFTLDYSDLE 131

NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5. Length = 131

>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

 Score =  135 bits (341), Expect = 2e-34
 Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 12/135 (8%)

Query: 356 PKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTY 415
           P +++  + Y P  P+  P   P       S+   + +  LD     TLFF FY+ Q TY
Sbjct: 423 PNENDTDKKYKPGKPSKAPSKKPDDPLSRFSSARIFMKFDLD-----TLFFIFYHYQGTY 477

Query: 416 QQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQ 475
           QQYLAA+ELKK+SWR+H+KY TWFQR  EPK    + E+G++ YFD+  +       W  
Sbjct: 478 QQYLAARELKKRSWRFHKKYRTWFQREIEPKPITGKSEEGSWRYFDYKKS-------WLA 530

Query: 476 RIKTEFTFEYNYLED 490
           R K +F F Y YLE 
Sbjct: 531 RKKNDFVFNYEYLEK 545

Length = 548

>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit [Transcription]

 Score = 75.8 bits (186), Expect = 4e-16
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 35/172 (20%)

Query: 339 QMYNMQM---LESAFYKLPQPKDSE-RARSYI----------PRHPA-VTPPSYPQVQAP 383
           +     +   L S    L +PK  + R  + +          P  P  + P  YP    P
Sbjct: 15  EQSIHDLGKDLLSEILSLVRPKKYQDRPSTTLYSPWAESTKKPVQPMFMLPNCYPNAPNP 74

Query: 384 IVSNPAF---WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW-- 438
               P F    E + +D++  +TLF+ FY   N   Q  A  EL K++WR+H+    W  
Sbjct: 75  ----PIFKVNIEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLT 130

Query: 439 FQRHEEPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLE 489
           F     P  A+   E+G+YV+FD F          W  ++  +F  +Y  + 
Sbjct: 131 FNPGMSPATADHVKERGSYVFFDPFS---------W-SKVSLDFLLDYKAVR 172

Length = 172

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	494
KOG2150	575	consensus CCR4-NOT transcriptional regulation comp	100.0
PF04153	134	NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR	100.0
COG5665	548	NOT5 CCR4-NOT transcriptional regulation complex,	100.0
COG5601	172	CDC36 General negative regulator of transcription	99.98
KOG2151	312	consensus Predicted transcriptional regulator [Tra	99.55
KOG2151	312	consensus Predicted transcriptional regulator [Tra	99.12

>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=100.00  E-value=2.7e-40  Score=348.24  Aligned_cols=144  Identities=53%  Similarity=0.978  Sum_probs=140.1

Q ss_pred             cccccchhhhhHHHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhccCCCCCceeEEEeecCCCc
Q 011072          335 GMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNT  414 (494)
Q Consensus       335 ~~~d~lLnLnslE~sy~tfPsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~ldnp~lfeKiKm~kfs~ETLFYIFY~~Pgd  414 (494)
                      ++++++..+.++|.++..++.|.|+|+|+.|.|++|+.+|.+|++++++.+++..+|+|     |+.|||||||||++|+
T Consensus       431 ~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFfiFY~~qgt  505 (575)
T KOG2150|consen  431 ITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFFIFYYQQGT  505 (575)
T ss_pred             ccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceeeEEeeecch
Confidence            45899999999999999999999999999999999999999999999999999999999     9999999999999999


Q ss_pred             HHHHHHHHHHhhcCceeecccceeeecccCCccCCCccceeeEEEeccccCccccccccceeeccCeEEechhhhhh
Q 011072          415 YQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE  491 (494)
Q Consensus       415 ~~QllAA~EL~~RgWRYHKe~k~Wf~R~~ePk~~t~~yErGsY~yFD~~~~~d~~~~~W~~r~K~nFtfeY~~LE~~  491 (494)
                      ++|++||+||++|+||||++|.+||+|+.|||.+|+.||+|+|+|||++        .||+|+|.+|+|+|.+||+.
T Consensus       506 ~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~~--------~W~qrkK~dFtfeY~yLE~~  574 (575)
T KOG2150|consen  506 YEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDYK--------DWSQRKKIDFTFEYQYLEDS  574 (575)
T ss_pred             HHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEehh--------HhhhhhccceeeehhhccCC
Confidence            9999999999999999999999999999999999999999999999995        89999999999999999985

>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes

Probab=100.00  E-value=1.2e-39  Score=290.81  Aligned_cols=128  Identities=45%  Similarity=0.910  Sum_probs=114.9

Q ss_pred             HHhcCCCCCCCCcC----CCCC-CCCCCCCCCCCCCCCCCC-CCChhhhhhhccCCCCCceeEEEeecCCCcHHHHHHHH
Q 011072          349 AFYKLPQPKDSERA----RSYI-PRHPAVTPPSYPQVQAPI-VSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAK  422 (494)
Q Consensus       349 sy~tfPsPwDsEpp----R~Y~-PrnP~~tP~cYpq~ppP~-ldnp~lfeKiKm~kfs~ETLFYIFY~~Pgd~~QllAA~  422 (494)
                      ++.+|.+||++.++    ..|. |+++..+|.|||+.+++. ++++.+++|     |++||||||||++|+|++|++||+
T Consensus         1 L~~sf~sp~~~~~~~~~~~~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k-----~~~eTLFyiFY~~p~~~~Q~~AA~   75 (134)
T PF04153_consen    1 LYSSFASPPSDSDSRQQEPQYQIPSCYLPTPSSYPQRPPPIILDSPEKFQK-----FSEETLFYIFYYMPGDYQQLLAAK   75 (134)
T ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCcCcCccccCCCcCcccccchHHHhh-----cCCceEEEEEeecCCcHHHHHHHH
Confidence            46778888877654    4564 777777899999988877 677777777     999999999999999999999999


Q ss_pred             HHhhcCceeecccceeeecccCCccCCCccceeeEEEeccccCccccccccceeeccCeEEechhhh
Q 011072          423 ELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE  489 (494)
Q Consensus       423 EL~~RgWRYHKe~k~Wf~R~~ePk~~t~~yErGsY~yFD~~~~~d~~~~~W~~r~K~nFtfeY~~LE  489 (494)
                      ||++|||||||++++||+|+++++++++.+|+|+|+|||++        +|++++|.||+|+|++||
T Consensus        76 eL~~R~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~~--------~W~~~~k~~f~~~y~~LE  134 (134)
T PF04153_consen   76 ELYKRGWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDPE--------SWEKRRKKNFTFDYSDLE  134 (134)
T ss_pred             HHHHCCcEEecCcCEEeeECCCCCccccceeeeeEEEechH--------HhcCcchhccEEeHHHcC
Confidence            99999999999999999999999999999999999999996        799999999999999998

This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

Probab=100.00  E-value=4.3e-35  Score=298.54  Aligned_cols=129  Identities=43%  Similarity=0.863  Sum_probs=119.9

Q ss_pred             HHhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcC
Q 011072          349 AFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQS  428 (494)
Q Consensus       349 sy~tfPsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~ldnp~lfeKiKm~kfs~ETLFYIFY~~Pgd~~QllAA~EL~~Rg  428 (494)
                      ++-..|.--|.++  .|+|+.|+++|.+||+.|++.|++..+|.+     |+.||||||||+.+|+++||+||+||++|+
T Consensus       418 SlV~~Pn~~D~~K--kY~P~~P~~~Ps~~P~~PL~~F~S~~if~k-----~D~DTLFfiFY~~~GTyQQY~Aa~eLKk~S  490 (548)
T COG5665         418 SLVLTPNENDTDK--KYKPGKPSKAPSKKPDDPLSRFSSARIFMK-----FDLDTLFFIFYHYQGTYQQYLAARELKKRS  490 (548)
T ss_pred             ceeecCCcchhhh--ccCCCCCCCCCCCCCCCccccccHHHHHHh-----cCccceEEEeeeccchHHHHHHHHHHHhhh
Confidence            3344555555554  899999999999999999999999999998     999999999999999999999999999999


Q ss_pred             ceeecccceeeecccCCccCCCccceeeEEEeccccCccccccccceeeccCeEEechhhhhh
Q 011072          429 WRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE  491 (494)
Q Consensus       429 WRYHKe~k~Wf~R~~ePk~~t~~yErGsY~yFD~~~~~d~~~~~W~~r~K~nFtfeY~~LE~~  491 (494)
                      |||||+|.+||+|+.||+.+|.+||+|+|.||||+       .+|..|.|.||+|.|.|||+.
T Consensus       491 WRFHkKY~TWFQR~~EPK~IT~~~E~Gs~ryFDy~-------~~W~~rKK~DF~F~Y~YLE~~  546 (548)
T COG5665         491 WRFHKKYRTWFQREIEPKPITGKSEEGSWRYFDYK-------KSWLARKKNDFVFNYEYLEKL  546 (548)
T ss_pred             hhhhcchhhhhhhhcccccccCccccCceeEeecc-------chHHHhhcccceeehhhhhhc
Confidence            99999999999999999999999999999999998       699999999999999999974

>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]

Probab=99.98  E-value=4.4e-34  Score=260.92  Aligned_cols=160  Identities=24%  Similarity=0.467  Sum_probs=132.8

Q ss_pred             CccccccccCCCcc--ccccCccccccccccccccchhh----hhHHHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCCCC
Q 011072          307 GLGVIGRRSVSDLG--AIGDSLSGATVSSGGMHDQMYNM----QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQV  380 (494)
Q Consensus       307 LLGvIgRms~~Dl~--AlG~DLT~~~~tLG~~~d~lLnL----nslE~sy~tfPsPwDsEppR~Y~PrnP~~tP~cYpq~  380 (494)
                      |+-++ |+.+.+++  .||.||.    +++      +.|    ...+....++-+||+...-++..|  -+.+|.||+..
T Consensus         5 l~pl~-~ied~e~s~~~lg~Dl~----s~~------~sl~~p~~~qDr~~~t~~sPwae~tkk~vqp--~f~lP~cy~n~   71 (172)
T COG5601           5 LKPLE-QIEDEEQSIHDLGKDLL----SEI------LSLVRPKKYQDRPSTTLYSPWAESTKKPVQP--MFMLPNCYPNA   71 (172)
T ss_pred             hhhHH-HHHHhhhhHHHhchhHH----HHH------HhhcCcccccccccccccChhhhhccCcccc--hhcCccccCCC
Confidence            34456 88888887  7999999    555      444    445567777999999884444332  26799999999


Q ss_pred             CCCCCCChhhhhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeeccc--CCccCCCccceeeEE
Q 011072          381 QAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYV  458 (494)
Q Consensus       381 ppP~ldnp~lfeKiKm~kfs~ETLFYIFY~~Pgd~~QllAA~EL~~RgWRYHKe~k~Wf~R~~--ePk~~t~~yErGsY~  458 (494)
                      |.|+.-+.. .+.+||.+|++||||||||.+|+|++|..|+.||.+|+|||||.+++|++.+.  +|.+.++..|||+|+
T Consensus        72 p~pp~f~~~-~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyv  150 (172)
T COG5601          72 PNPPIFKVN-IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYV  150 (172)
T ss_pred             CCCCceecc-hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEE
Confidence            876544444 35689999999999999999999999999999999999999999999999985  788888999999999


Q ss_pred             EeccccCccccccccceeeccCeEEechhhh
Q 011072          459 YFDFHIANDDLQHGWCQRIKTEFTFEYNYLE  489 (494)
Q Consensus       459 yFD~~~~~d~~~~~W~~r~K~nFtfeY~~LE  489 (494)
                      +|||.        .|+ |++.||.|+|+.++
T Consensus       151 fFDP~--------~W~-k~~~dfll~y~av~  172 (172)
T COG5601         151 FFDPF--------SWS-KVSLDFLLDYKAVR  172 (172)
T ss_pred             EEcch--------hHH-HHhHHHHHHHHhhC
Confidence            99996        897 99999999999874

>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.55  E-value=2.1e-15  Score=151.84  Aligned_cols=125  Identities=23%  Similarity=0.297  Sum_probs=97.2

Q ss_pred             ccCcccccCCCCCCCCCCCCCCCCC------CCccccccccCCCcc---ccccCccccccccccccccchhhhhHHHHHh
Q 011072          281 LTEPAQVVRDTDLSPGQPLQSSQPS------GGLGVIGRRSVSDLG---AIGDSLSGATVSSGGMHDQMYNMQMLESAFY  351 (494)
Q Consensus       281 ~~e~~Q~~rd~~l~~~Q~~qs~~~~------GLLGvIgRms~~Dl~---AlG~DLT~~~~tLG~~~d~lLnLnslE~sy~  351 (494)
                      ....+|...|.-+   -.+++.|..      |||..| |+.+.|-.   .+|.||+    ++|      |+|+..|.++.
T Consensus       179 qk~g~q~~Pdg~v---~niP~~m~t~~fgm~gLL~~i-r~~~~~g~~~l~lg~Dl~----~ll------lsla~~~di~~  244 (312)
T KOG2151|consen  179 QKVGSQPTPDGYV---PNIPSGMETGQFGMKGLLTLI-RGAQGEGQTTLPLGADLN----SLL------LSLAVPEDIIP  244 (312)
T ss_pred             hhcccccCCCCcc---cCCCcchhhhhhhhhcchhhh-eecccCcceeeccCCChh----hhh------ccccccccccc
Confidence            3344455566655   346777754      444444 77777622   7899999    999      99999999999


Q ss_pred             cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcCc
Q 011072          352 KLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW  429 (494)
Q Consensus       352 tfPsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~ldnp~lfeKiKm~kfs~ETLFYIFY~~Pgd~~QllAA~EL~~RgW  429 (494)
                      +|-+||..++++..   -.+.+|.||+..+++.. .      .|+..|++|||||+||.+++|.+|..||.||.+|+|
T Consensus       245 ~F~~P~~~~P~~~~---~~~~lp~~y~~v~~~~~-~------~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w  312 (312)
T KOG2151|consen  245 TFQGPWGEVPTSQE---ASFNLPNCYLNVNPKLQ-F------SKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW  312 (312)
T ss_pred             cccCCcccCCcccc---hhhhcchhhhccCCccc-h------HHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence            99999999999822   24679999998544332 1      236679999999999999999999999999999999

>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.12  E-value=1.9e-11  Score=123.53  Aligned_cols=133  Identities=28%  Similarity=0.563  Sum_probs=107.5

Q ss_pred             ccccCccccccccccccccchhhhhH-HHHHhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhh---hcc
Q 011072          321 AIGDSLSGATVSSGGMHDQMYNMQML-ESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER---LSL  396 (494)
Q Consensus       321 AlG~DLT~~~~tLG~~~d~lLnLnsl-E~sy~tfPsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~ldnp~lfeK---iKm  396 (494)
                      ++|.||+    ++|      ++++.- -.+|.+|..||++++.+.-   .+...|.||...+.       ++.+   ..+
T Consensus        37 ~~~~d~~----~lg------~~~n~~~~~~~~~f~g~~~s~~l~~l---~~~~~P~~~~~~~~-------~~~~~~~~~~   96 (312)
T KOG2151|consen   37 ALGYDLT----TLG------LNLNLSERKLLMNFAGPWASEPLRHL---LDTKVPEEYMTHRH-------LRSKLPSLRL   96 (312)
T ss_pred             eeccchh----ccC------cccccccccccccccCcCCCcccccc---ccccCccccccchh-------hhhcCCcccc
Confidence            7899999    999      665533 3788889999999998843   34568999983322       2222   136


Q ss_pred             CCCCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeeccc--CCccCCCccceeeEEEeccccCccccccccc
Q 011072          397 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWC  474 (494)
Q Consensus       397 ~kfs~ETLFYIFY~~Pgd~~QllAA~EL~~RgWRYHKe~k~Wf~R~~--ePk~~t~~yErGsY~yFD~~~~~d~~~~~W~  474 (494)
                      +++...-|||+||++|        |.||..|.||||++.+.|+.+..  .++..++.++.|.|..||-.        .|+
T Consensus        97 ~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q~--------s~~  160 (312)
T KOG2151|consen   97 NKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQM--------SWR  160 (312)
T ss_pred             cccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccch--------hhh
Confidence            6799999999999999        99999999999999999999974  56777789999999999985        887


Q ss_pred             eeeccCeEEechhhhh
Q 011072          475 QRIKTEFTFEYNYLED  490 (494)
Q Consensus       475 ~r~K~nFtfeY~~LE~  490 (494)
                       .+-.+-.++|..+|.
T Consensus       161 -~~~ke~~l~~~~~~~  175 (312)
T KOG2151|consen  161 -KIPKELKLAYSDLED  175 (312)
T ss_pred             -hcccchhhccccccc
Confidence             677788888888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	494
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 58/443 (13%), Positives = 119/443 (26%), Gaps = 109/443 (24%)

Query: 109 NSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLL 168
           +   N N+   F            K  Q L +++   +  + G+ LG  K          
Sbjct: 117 DRLYNDNQV--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-LGSGK---------- 163

Query: 169 QQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIH-----QQSSQQTLMSGGQK 223
                  + ++    L   VQ             +    I        +S +T++   QK
Sbjct: 164 -------TWVALDVCLSYKVQ------------CKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 224 -DADVSHLKVEEPQQPQNLPEESTPESA--------SSPGLGKNLIHEDDLKAPYAIDS- 273
               +            N+       S          S      L+   +++   A ++ 
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 274 -------STGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGR---RSVSDL---- 319
                   T     +T+       T +S      +  P     ++ +       DL    
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 320 -----GAIGDSLSGATVSSGGMHDQMYNMQMLE------SAFYKLPQPKDSERARSYIPR 368
                  +  S+   ++  G      +     +       +   + +P +  R   +   
Sbjct: 323 LTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKM-F--D 376

Query: 369 HPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFY------YQQNTYQ---QYL 419
             +V PPS      P +     W  +              Y       +++T      YL
Sbjct: 377 RLSVFPPS---AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 420 AAKELKKQSWRYHRK----YNTW--FQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGW 473
             K   +  +  HR     YN    F   +      D++    Y +   H+ N +     
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPERM 490

Query: 474 CQRIKTEFT---FEYNYLEDELI 493
                T F     ++ +LE ++ 
Sbjct: 491 -----TLFRMVFLDFRFLEQKIR 508

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 59/445 (13%), Positives = 121/445 (27%), Gaps = 108/445 (24%)

Query: 114 QNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNS 173
           + E  Q    T +  +QR++ L    QV  + + + L       + +   +  LL+   +
Sbjct: 99  KTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRL-------QPYLKLRQALLELRPA 150

Query: 174 QGSSISAQAGLG---LGVQAPGMNSVTSASLQQQ-PNPIH-----QQSSQQTLMSGGQK- 223
           +   I    G G   + +         S  +Q +    I        +S +T++   QK 
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 224 DADVSHLKVEEPQQPQNLPEESTPESA--------SSPGLGKNLIHEDDLKAPYAIDS-- 273
              +            N+       S          S      L+   +++   A ++  
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRI--HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 274 ------STGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGR---RSVSDL----- 319
                  T     +T+       T +S      +  P     ++ +       DL     
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 320 ----GAIGDSLSGATVSSGGMHDQMYNMQMLE------SAFYKLPQPKDSERARSYIPRH 369
                 +  S+   ++  G      +     +       +   + +P +  R   +    
Sbjct: 324 TTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKM-F--DR 377

Query: 370 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFY------YQQNTYQ---QYLA 420
            +V PPS      P +     W  +              Y       +++T      YL 
Sbjct: 378 LSVFPPS---AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 421 AKELKKQSWRYHRK----YNT-----------------WFQ---RHEEPKVANDEFEQGT 456
            K   +  +  HR     YN                  ++     H +     +      
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 457 YVYFDFH-----IANDDLQHGWCQR 476
            V+ DF      I +D     W   
Sbjct: 495 MVFLDFRFLEQKIRHDST--AWNAS 517

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00