Citrus Sinensis ID: 011081
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XIM8 | 498 | Pentatricopeptide repeat- | yes | no | 0.985 | 0.977 | 0.523 | 1e-141 | |
| Q9SZ10 | 521 | Pentatricopeptide repeat- | no | no | 0.844 | 0.800 | 0.272 | 5e-45 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.864 | 0.571 | 0.288 | 6e-45 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.821 | 0.547 | 0.265 | 2e-41 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.838 | 0.544 | 0.260 | 1e-40 | |
| Q9ZQF1 | 627 | Pentatricopeptide repeat- | no | no | 0.941 | 0.741 | 0.255 | 4e-40 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.829 | 0.374 | 0.289 | 8e-38 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.819 | 0.555 | 0.264 | 2e-37 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.536 | 0.459 | 0.320 | 6e-37 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.617 | 0.484 | 0.295 | 1e-36 |
| >sp|Q9XIM8|PP155_ARATH Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust.
Identities = 263/502 (52%), Positives = 348/502 (69%), Gaps = 15/502 (2%)
Query: 1 MAVQILKHIIFSVSKPKPKPQLLSQFSTSSSTPPSDQSHNLIATVVSLLTHHRSKSRWNH 60
M+ IL+ I+ KPKP L T+ S+PPS S LI+ VS+LTHHRSKSRW+
Sbjct: 1 MSTSILRRILDPTRKPKPDAILSISLLTTVSSPPSPPSDPLISDAVSILTHHRSKSRWST 60
Query: 61 LLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARL 120
L SL SG TP+QFS+I L L+NNPHL+LRFF FT+ SLC H S +T+IHILSR+RL
Sbjct: 61 LRSLQPSGFTPSQFSEITLCLRNNPHLSLRFFLFTRRYSLCSHDTHSCSTLIHILSRSRL 120
Query: 121 IGPARDVIRVALR----SPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEK 176
A ++IR+ALR + D LK+F L+K+Y CGSAPFVFDLLIK CL+ K +
Sbjct: 121 KSHASEIIRLALRLAATDEDEDRVLKVFRSLIKSYNRCGSAPFVFDLLIKSCLDSK---E 177
Query: 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236
I+ V ++R L SRG++ ++STCNALI EVSR +G +GY++YREVFGLD + +
Sbjct: 178 IDGAVMVMRKLRSRGINAQISTCNALITEVSRRRGASNGYKMYREVFGLDD---VSVDEA 234
Query: 237 VKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR-LGCEPDCYSYSVLMAVFCEE 295
K + +++PN TFN++MV FYREG E VE +W EM +GC P+ YSY+VLM +C
Sbjct: 235 KKMIGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCAR 294
Query: 296 RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355
M EAEK+WEEM+ + V +D+VAYNT+IGG C E+ +A+E FR+MGL G+E + +T+
Sbjct: 295 GLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTY 354
Query: 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR---RVFEALDILKA 412
EHLVNGYC+AGDVDS ++VY +M RKGFE +G TIE L+ LCD R RV EA DI+K
Sbjct: 355 EHLVNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKD 414
Query: 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG 472
V + +P+ Y L+K LCE+GKM+ AL +QAEMVGKGF+PS E Y AFIDGY G
Sbjct: 415 AVREAMFYPSRNCYELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQETYRAFIDGYGIVG 474
Query: 473 NVEMATMLRKEMFEN-QVRQED 493
+ E + +L EM E+ ++R E+
Sbjct: 475 DEETSALLAIEMAESLKLRAEE 496
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/440 (27%), Positives = 208/440 (47%), Gaps = 23/440 (5%)
Query: 46 VSLLTHHRSKSRWNHLLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSL 105
V++ H +S W+ L L L + + L ++ + L+L FF++ + ++ HSL
Sbjct: 57 VNVAHSHLIQSDWDKLNKLS-DHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSL 115
Query: 106 SSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLI 165
++A ++H L++ R A ++R L + D K+F+ L+ +YREC S P VFD L
Sbjct: 116 ETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLF 175
Query: 166 KCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVIS-GYEIYREVFG 224
K +K K D + G V +CNA + + G+G + YRE+
Sbjct: 176 KTFAHLK---KFRNATDTFMQMKDYGFLPTVESCNAYMSSL-LGQGRVDIALRFYREM-- 229
Query: 225 LDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYS 284
R ++ PN +T N +M G+ R G +K ++ +M RLG S
Sbjct: 230 --------------RRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVS 275
Query: 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344
Y+ L+A CE+ + A KL M ++ +VV +NT+I GFC ++ A + F EM
Sbjct: 276 YNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMK 335
Query: 345 LSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVF 404
V ++VT+ L+NGY + GD + A Y DM G + + T LI LC + +
Sbjct: 336 AVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTR 395
Query: 405 EALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAF 464
+A +K + K L P ++ LI G C + ++ M+ G P+ + ++
Sbjct: 396 KAAQFVK-ELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNML 454
Query: 465 IDGYMKEGNVEMATMLRKEM 484
+ + + + + A+ + +EM
Sbjct: 455 VSAFCRNEDFDGASQVLREM 474
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 226/464 (48%), Gaps = 37/464 (7%)
Query: 29 SSSTPPSDQSHNLIAT-VVSLLTHHRSKSRWNHLLSLCRSGLTPTQFSQIALGLKNNPHL 87
S ST S S +L+A ++ L H + +HL + TP S + L +N+ L
Sbjct: 11 SLSTFASSPSDSLLADKALTFLKRH--PYQLHHL----SANFTPEAASNLLLKSQNDQAL 64
Query: 88 ALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIR-VALRSPENDPKLKLFEV 146
L+F ++ +L +HIL++ +L A+ + VA ++ +++ +F+
Sbjct: 65 ILKFLNWANPHQF--FTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKS 122
Query: 147 LVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEV 206
L +TY C S VFDL++K + I+ + IV + + G V + NA++
Sbjct: 123 LQETYDLCYSTSSVFDLVVK---SYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDAT 179
Query: 207 SRGKGVISGYE-IYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEK 265
R K IS E +++E+ L+S +V PNV T+N L+ GF G +
Sbjct: 180 IRSKRNISFAENVFKEM--LES--------------QVSPNVFTYNILIRGFCFAGNIDV 223
Query: 266 VEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325
++ +M GC P+ +Y+ L+ +C+ R++ + KL M K +E ++++YN +I
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385
G C G M EM G VT+ L+ GYC+ G+ A++++ +M R G P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343
Query: 386 EGSTIEVLIGELC---DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEA 442
T LI +C + R E LD ++ R GL P E++Y L+ G ++G M EA
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVR----GLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 443 LKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486
+V EM GF PS+ Y+A I+G+ G +E A + ++M E
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/464 (26%), Positives = 209/464 (45%), Gaps = 58/464 (12%)
Query: 77 IALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPE 136
+ + +K + L L FF + + + +L S +IH+ ++ + A+ +I P+
Sbjct: 93 VLMKIKCDYRLVLDFFDWARSRR--DSNLESLCIVIHLAVASKDLKVAQSLISSFWERPK 150
Query: 137 ---NDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEV---------------------- 171
D ++ F++LV TY++ GS P VFD+ + ++
Sbjct: 151 LNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSV 210
Query: 172 -----------KNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIY- 219
K+ K T + + R G+ V++ N +I V + + + +
Sbjct: 211 DSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLL 270
Query: 220 -REVFGLDSDATA-----------GIGKDVKRVVRV------RPNVHTFNALMVGFYREG 261
E+ G D + G V +++ V +PN + + +++ R
Sbjct: 271 LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 330
Query: 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYN 321
+ E+ + EM R G PD Y+ L+ FC+ +R A K + EM +++ DV+ Y
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 390
Query: 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381
II GFC+IG+M A + F EM G+E SVTF L+NGYC+AG + A V+N M +
Sbjct: 391 AIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA 450
Query: 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEE 441
G P T LI LC + + A ++L + K GL P +Y ++ GLC+ G +EE
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLH-EMWKIGLQPNIFTYNSIVNGLCKSGNIEE 509
Query: 442 ALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485
A+K+ E G Y+ +D Y K G ++ A + KEM
Sbjct: 510 AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEML 553
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/442 (26%), Positives = 214/442 (48%), Gaps = 28/442 (6%)
Query: 69 LTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVI 128
L P ++ + LK +P LA +FF ++ ++ KHS+ SY + HIL AR+ A V+
Sbjct: 106 LAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVL 165
Query: 129 RVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLM 188
+ + S + +F+VL T C VFD L +++ +E+ C ++
Sbjct: 166 KEMVLSKAD---CDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFR 222
Query: 189 SRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGL--------------------DSD 228
+ K +CN L+ ++ ++++ G D +
Sbjct: 223 ---VFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVE 279
Query: 229 ATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVL 288
A G+ +++K V P+ T+N+++ GF + G + + EM + CEPD +Y+ L
Sbjct: 280 AARGLFEEMKFRGLV-PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL 338
Query: 289 MAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV 348
+ FC+ ++ + + EM+ ++ +VV+Y+T++ FC+ G M +A +F+ +M G+
Sbjct: 339 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 398
Query: 349 ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALD 408
+ T+ L++ C+ G++ A + N+M + G E T LI LCD R+ EA +
Sbjct: 399 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 458
Query: 409 ILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGY 468
+ ++ G+ P SY LI G + M+ AL++ E+ G+G +P L +Y FI G
Sbjct: 459 LF-GKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGL 517
Query: 469 MKEGNVEMATMLRKEMFENQVR 490
+E A ++ EM E ++
Sbjct: 518 CSLEKIEAAKVVMNEMKECGIK 539
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 146/572 (25%), Positives = 245/572 (42%), Gaps = 107/572 (18%)
Query: 5 ILKHIIFSVSKPKPKPQL-----LSQFSTSSSTPPSDQSHNLIATVVSLLTHHRSKSRWN 59
IL+H I +S P L+Q ST S P S L+ ++ S S+W
Sbjct: 9 ILRHRISILSGAGYSPAAARLSSLAQTSTPESVLPPITSEILLESIRS--------SQW- 59
Query: 60 HLLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRAR 119
H++ LTP+ S L L P+LA F+F H L + + I ++S+
Sbjct: 60 HIVEHVADKLTPSLVSTTLLSLVKTPNLA---FNFVNHIDLYRLDFQTQCLAIAVISKLS 116
Query: 120 LIGPARDVIRVALRSPENDPKLKLFEVLVKTY-RECGSAPFVFDLLIKCCLEVKNIEKIE 178
P +++ + S +N + LF+ LV + R + +FDLL++CC +++ +++
Sbjct: 117 SPKPVTQLLKEVVTSRKNSIR-NLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEAI 175
Query: 179 TCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA------- 231
C +++ +G K TCN ++ +SR + + + Y +++ ++ +
Sbjct: 176 ECFYLMK---EKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMI 232
Query: 232 ------GIGKDVK------RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE 279
G K K V ++P + T+N L+ GF G E + EM G +
Sbjct: 233 NVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQ 292
Query: 280 PDCYSYSVLMAVFCEERRMREAEKLWEEM----------------------------RDK 311
PD +Y+ +++ C E R E + +E+ RD+
Sbjct: 293 PDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDE 352
Query: 312 NVEHDVV----AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367
V+ +V YNT+I G ++ AE RE+ G+ SVT+ L+NGYC+ GD
Sbjct: 353 MVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGD 412
Query: 368 VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVK----------- 416
A ++++M G +P T LI LC K + EA ++ + V K
Sbjct: 413 AKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNT 472
Query: 417 --------------FGLF---------PTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKG 453
F L P + +Y L++GLC EGK EEA ++ EM +G
Sbjct: 473 LMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRG 532
Query: 454 FEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485
+P Y+ I GY K+G+ + A M+R EM
Sbjct: 533 IKPDHISYNTLISGYSKKGDTKHAFMVRDEML 564
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 208/439 (47%), Gaps = 29/439 (6%)
Query: 55 KSRWNHLLSLCRSG-LTPTQFSQIALGLKNNPHLALRFFSFT--QHKSLCKHSLSSYATI 111
KS +N +L++ R G L + Q L L + LAL+F + Q H +
Sbjct: 21 KSIYN-ILTIDRWGSLNHMDYRQARLRLVHGK-LALKFLKWVVKQPGLETDHIVQLVCIT 78
Query: 112 IHILSRARLIGPARDVIR-VALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLE 170
HIL RAR+ PAR +++ ++L S ++ +F L+ TYR C S P V+D+LI+ L
Sbjct: 79 THILVRARMYDPARHILKELSLMSGKSSF---VFGALMTTYRLCNSNPSVYDILIRVYLR 135
Query: 171 VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT 230
I+ ++I R++ G + V TCNA++ V + +S + +E+
Sbjct: 136 EG---MIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEM-------- 184
Query: 231 AGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMA 290
+KR ++ P+V TFN L+ EG+FEK + +M + G P +Y+ ++
Sbjct: 185 ------LKR--KICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLH 236
Query: 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVES 350
+C++ R + A +L + M+ K V+ DV YN +I C +A+ R+M +
Sbjct: 237 WYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHP 296
Query: 351 SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDIL 410
+ VT+ L+NG+ G V A + N+M G P T LI + EAL +
Sbjct: 297 NEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF 356
Query: 411 KARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK 470
K GL P+E SY L+ GLC+ + + A M G Y+ IDG K
Sbjct: 357 YMMEAK-GLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415
Query: 471 EGNVEMATMLRKEMFENQV 489
G ++ A +L EM ++ +
Sbjct: 416 NGFLDEAVVLLNEMSKDGI 434
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/469 (26%), Positives = 212/469 (45%), Gaps = 64/469 (13%)
Query: 59 NHLLSLCRSGLTPTQFSQIALGLKNNPHLALRFFS-FTQHKSLCKHSLSSYATIIHILSR 117
NHL+ L P ++ +N+ L RF H KH+ S + +IHIL R
Sbjct: 71 NHLIRL-----NPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVR 125
Query: 118 ARLIGPARD-VIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEK 176
+ + A+ ++R+ RS + +L++ L T+ CGS VFDLLI+ ++ + + +
Sbjct: 126 SGRLSDAQSCLLRMIRRSGVS--RLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLRE 183
Query: 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236
++R S+G +V + CNALI + R V + +Y+E+ + +G+G
Sbjct: 184 AHEAFTLLR---SKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI------SRSGVG-- 232
Query: 237 VKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER 296
NV+T N ++ ++G EKV ++ G PD +Y+ L++ + +
Sbjct: 233 --------INVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKG 284
Query: 297 RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356
M EA +L M K V YNT+I G C+ G+ RA+E F EM SG+ S T+
Sbjct: 285 LMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 344
Query: 357 HLVNGYCRAGDV-----------------------------------DSAILVYNDMCRK 381
L+ C+ GDV D A++ +N +
Sbjct: 345 SLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA 404
Query: 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEE 441
G P+ +LI C K + A++ L+ +++ G +Y ++ GLC+ + E
Sbjct: 405 GLIPDNVIYTILIQGYCRKGMISVAMN-LRNEMLQQGCAMDVVTYNTILHGLCKRKMLGE 463
Query: 442 ALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490
A K+ EM + P + IDG+ K GN++ A L ++M E ++R
Sbjct: 464 ADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIR 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 151/268 (56%), Gaps = 3/268 (1%)
Query: 227 SDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS 286
SDA+ + ++R ++ PNV TFNAL+ F +EG + E ++ EM + +PD ++YS
Sbjct: 312 SDASRLLSDMIER--KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 369
Query: 287 VLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346
L+ FC R+ EA+ ++E M K+ +VV YNT+I GFC+ + E FREM
Sbjct: 370 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQR 429
Query: 347 GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEA 406
G+ ++VT+ L++G+ +A D D+A +V+ M G P T L+ LC ++ +A
Sbjct: 430 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 489
Query: 407 LDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466
+ + + + + + PT +Y +I+G+C+ GK+E+ + + KG +P + IY+ I
Sbjct: 490 MVVFEY-LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMIS 548
Query: 467 GYMKEGNVEMATMLRKEMFENQVRQEDG 494
G+ ++G E A L ++M E+ + G
Sbjct: 549 GFCRKGLKEEADALFRKMREDGPLPDSG 576
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 169/322 (52%), Gaps = 17/322 (5%)
Query: 173 NIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAG 232
N + + +++ + ++G+ V T N+LI + +G SDA+
Sbjct: 267 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN--------------YGRWSDASRL 312
Query: 233 IGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVF 292
+ ++R ++ PNV TF+AL+ F +EG + E ++ EM + +PD ++YS L+ F
Sbjct: 313 LSDMIER--KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 370
Query: 293 CEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSS 352
C R+ EA+ ++E M K+ +VV YNT+I GFC+ + E FREM G+ ++
Sbjct: 371 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430
Query: 353 VTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKA 412
VT+ L+ G +AGD D A ++ M G P+ T +L+ LC ++ +AL + +
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE- 489
Query: 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG 472
+ K + P +Y +I+G+C+ GK+E+ + + KG +P++ IY+ I G+ ++G
Sbjct: 490 YLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 549
Query: 473 NVEMATMLRKEMFENQVRQEDG 494
E A L +EM E+ G
Sbjct: 550 LKEEADALFREMKEDGTLPNSG 571
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| 225428586 | 492 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.987 | 0.59 | 1e-161 | |
| 255556157 | 486 | pentatricopeptide repeat-containing prot | 0.963 | 0.979 | 0.587 | 1e-154 | |
| 224080263 | 498 | predicted protein [Populus trichocarpa] | 0.933 | 0.925 | 0.594 | 1e-153 | |
| 356538835 | 487 | PREDICTED: pentatricopeptide repeat-cont | 0.957 | 0.971 | 0.560 | 1e-153 | |
| 15226656 | 498 | pentatricopeptide repeat-containing prot | 0.985 | 0.977 | 0.523 | 1e-139 | |
| 449502417 | 499 | PREDICTED: pentatricopeptide repeat-cont | 0.894 | 0.885 | 0.554 | 1e-138 | |
| 449455312 | 499 | PREDICTED: pentatricopeptide repeat-cont | 0.894 | 0.885 | 0.551 | 1e-138 | |
| 297741402 | 299 | unnamed protein product [Vitis vinifera] | 0.295 | 0.488 | 0.660 | 2e-76 | |
| 125536370 | 459 | hypothetical protein OsI_38069 [Oryza sa | 0.890 | 0.958 | 0.360 | 8e-72 | |
| 326490157 | 475 | predicted protein [Hordeum vulgare subsp | 0.870 | 0.905 | 0.375 | 3e-71 |
| >gi|225428586|ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 295/500 (59%), Positives = 360/500 (72%), Gaps = 14/500 (2%)
Query: 1 MAVQILKHIIFSVSKPKPKPQLLSQFSTSSSTPPSDQSHNLIATVVSLLTHHRSKSRWNH 60
MAV +K I+F+ P + S SS + + LI+T VS+L H RSKSRW+H
Sbjct: 1 MAVSKVKQILFT-----PLARKTLCLSLSSLPSDQNPTKTLISTAVSILRHQRSKSRWSH 55
Query: 61 LLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARL 120
L SL G TPT+ SQI L +KNNPHLAL FF + HKSLC H+L SY+TIIHIL+RARL
Sbjct: 56 LQSLFPKGFTPTEASQIVLQIKNNPHLALSFFLWCHHKSLCNHTLLSYSTIIHILARARL 115
Query: 121 IGPARDVIRVALRSPENDPKL-----KLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIE 175
A +IR A+R ++ + K+FE LVKTY CGSAPFVFDLLIK CL N +
Sbjct: 116 KSQALGLIRTAIRVFDDSDECSSQPPKIFESLVKTYNSCGSAPFVFDLLIKACL---NSK 172
Query: 176 KIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFG-LDSDATAGIG 234
+IE + IV+ML SRG+S +STCNALIW+VSRG+G +GYEIYREVFG D + +
Sbjct: 173 RIEQSISIVKMLRSRGISPTISTCNALIWQVSRGRGCDAGYEIYREVFGSWDDEINEKVR 232
Query: 235 KDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE 294
V+ VRV PNVHTFNALMV FYR+G EKVE++W EM C P+ YSYSVLMA FC+
Sbjct: 233 VRVRVRVRVCPNVHTFNALMVCFYRDGGVEKVEEIWAEMGEWDCNPNAYSYSVLMAAFCD 292
Query: 295 ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354
E RM E EKLWEEMR K +EHD++AYNTIIGGFC IGE+ R EE FREM LSG++S+ VT
Sbjct: 293 EGRMGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREMELSGIQSTCVT 352
Query: 355 FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARV 414
+EHL+NGYC GDVDSA+L+Y DMCRKGF E T++ +I LC+ RRV EAL +L+ +
Sbjct: 353 YEHLINGYCEIGDVDSAVLLYKDMCRKGFRAEARTVDGMILLLCNNRRVHEALKLLRVAM 412
Query: 415 VKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNV 474
P KSY LIKG CEEGKMEEA K+Q+EMVGKGF+P+LEIYSAFIDGYMK+GN
Sbjct: 413 GNVEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAFIDGYMKQGNK 472
Query: 475 EMATMLRKEMFENQVRQEDG 494
E+A LRKEMFE Q++QE+
Sbjct: 473 EIAETLRKEMFETQMQQEEN 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556157|ref|XP_002519113.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541776|gb|EEF43324.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 295/502 (58%), Positives = 357/502 (71%), Gaps = 26/502 (5%)
Query: 1 MAVQILKHIIFSVSKPKPKPQLLSQFSTSSSTPPSDQSHNLIATVVSLLTHHRSKSRWNH 60
MA ILK I+ S PQ LS ++S P SDQ LI T+ SLL HHRSKSRW H
Sbjct: 1 MASPILKRILL-FSPKTINPQSLS----TASPPSSDQ--QLITTITSLLIHHRSKSRWTH 53
Query: 61 LLSLCRSG---LTPTQFSQIALGLKNNPHLALRFFSFT-QHKSLCKHSLSSYATIIHILS 116
L SL + LTPT FSQI L LK+NP LALRFF FT ++ S C H L S +TI HILS
Sbjct: 54 LRSLILTSNKTLTPTHFSQIILLLKSNPRLALRFFHFTLRNPSFCSHDLRSISTITHILS 113
Query: 117 RARLIGPARDVIRVALRSP-----ENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEV 171
RARL A+ +I +A SP N LK FE+LVKTYREC SAPFVFDLLIK CLE+
Sbjct: 114 RARLKPQAQSIIHLAFTSPVLVDDSNGQALKFFEILVKTYRECDSAPFVFDLLIKSCLEL 173
Query: 172 KNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA 231
K KI+ + IVR+L SRG+S +STCN L+ VS+ KG +GY ++REVF ++ +
Sbjct: 174 K---KIDDGLKIVRLLRSRGISPLISTCNFLVSWVSKCKGCYAGYGVFREVFEVNDN--- 227
Query: 232 GIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAV 291
+ KRV++VRPNVHTFN LM+GFYR+G E VE+VW EM R C P+ +SYSVLM V
Sbjct: 228 ----EGKRVIKVRPNVHTFNELMMGFYRDGELEMVEEVWSEMERFECVPNGFSYSVLMTV 283
Query: 292 FCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS 351
F + R +E EKLWEEMR K ++ DVVAYNT+IGGFC+IGE+ +AEE REM L+GVE++
Sbjct: 284 FLDVGRTKEIEKLWEEMRAKGIKGDVVAYNTVIGGFCKIGEIEKAEELSREMELNGVEAN 343
Query: 352 SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411
VTFEHL+NGYC GDVDSAILV+ M RKGF EGS ++VLIG LC+KRRV EAL+I++
Sbjct: 344 CVTFEHLINGYCSVGDVDSAILVFKHMVRKGFRAEGSVMDVLIGGLCEKRRVSEALEIMR 403
Query: 412 ARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKE 471
+ G + KSY LIKGLC++GKM+EALK+QAEMVG GFEP+ EIY AFIDGYMK
Sbjct: 404 IAMRNDGFRLSGKSYELLIKGLCKDGKMDEALKLQAEMVGGGFEPNFEIYGAFIDGYMKL 463
Query: 472 GNVEMATMLRKEMFENQVRQED 493
GN EMA MLRKEM Q RQE+
Sbjct: 464 GNEEMAAMLRKEMSGIQKRQEE 485
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080263|ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|222849039|gb|EEE86586.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 283/476 (59%), Positives = 351/476 (73%), Gaps = 15/476 (3%)
Query: 26 FSTSSSTPPSDQSHNLIATVVSLLTHHRSKSRWNHL----LSLCRSGLTPTQFSQIALGL 81
FST++S PP+ S L ++SLLTHHRSKSRW+HL + + L P FS I L L
Sbjct: 25 FSTTTSPPPNHHS-PLTTAIISLLTHHRSKSRWSHLRSLLTTTTSTPLAPGHFSLITLKL 83
Query: 82 KNNPHLALRFFSFTQHKS-LCKHSLSSYATIIHILSRARLIGPARDVIRVALRSP---EN 137
K+NPHLAL FF FT H S LC H+L SYATIIHILSRARL A+++IR LRS
Sbjct: 84 KSNPHLALSFFHFTLHNSSLCSHNLRSYATIIHILSRARLKAHAQEIIRAGLRSQILYHL 143
Query: 138 DPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVS 197
+++ FEVLVK+YREC SAPFVFDLLIK CLE+K KI+ ++IV+ML S+G+S +S
Sbjct: 144 LKEVRFFEVLVKSYRECDSAPFVFDLLIKSCLELK---KIDGSIEIVKMLRSKGISPSIS 200
Query: 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGF 257
TCNALI EVSR KG GY +++EVFGL+S +G+ ++R RVRPNVH+FN LMVGF
Sbjct: 201 TCNALISEVSRCKGSFVGYGVFKEVFGLES---CELGEKMRRGFRVRPNVHSFNELMVGF 257
Query: 258 YREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317
YR G E VE++W EM R GC + +SY VL+AVFCE R+ EAE+LW+EMR K + DV
Sbjct: 258 YRNGEVEMVEEIWSEMERFGCVANGFSYGVLIAVFCEGGRLSEAERLWDEMRVKGIMPDV 317
Query: 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYND 377
VAYNTIIGGFC+ GE+ +AE FREMGLSG+ESS VTFEHL+ GYCR GDV+SAILVY D
Sbjct: 318 VAYNTIIGGFCKAGEVEKAEGLFREMGLSGIESSCVTFEHLIEGYCRIGDVNSAILVYKD 377
Query: 378 MCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG 437
M R+ F E T+EVLIG LC+++RVFEAL I+++ + P KSY LI GLCE+G
Sbjct: 378 MRRRDFRLEALTMEVLIGGLCEQKRVFEALKIMRSAMRDVSFHPNGKSYELLINGLCEDG 437
Query: 438 KMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQED 493
KMEEALK+Q+EMVGKGF+P+ IY AFI+GY+K GN EMA MLRKEM Q +Q++
Sbjct: 438 KMEEALKLQSEMVGKGFDPNSAIYGAFIEGYVKLGNEEMAAMLRKEMSVAQKQQQE 493
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538835|ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 282/503 (56%), Positives = 365/503 (72%), Gaps = 30/503 (5%)
Query: 1 MAVQILKHIIFSVSKPKPKPQLLSQFSTSSSTPPSDQSHNLIATVVSLLTHHRSKSRWNH 60
MA+QILK ++ +PKP L FS S S +D S +L+ VS+LTHHRSKSRW++
Sbjct: 1 MAIQILKQFSQTL---RPKPWTLF-FSFSCS---NDASQSLVTDAVSILTHHRSKSRWSN 53
Query: 61 LLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARL 120
L S C +G+TP +FS+I L +KN P LALRFF +T+ KSLC H+L+SY++IIH+L+RARL
Sbjct: 54 LRSACPNGITPAEFSEITLHIKNKPQLALRFFLWTKSKSLCNHNLASYSSIIHLLARARL 113
Query: 121 IGPARDVIRVALR-SPENDPK--------LKLFEVLVKTYRECGSAPFVFDLLIKCCLEV 171
A D+IR A+R S +ND + L LFE LVKTYR+ GSAPFVFDLLIK CL+
Sbjct: 114 SSHAYDLIRTAIRASHQNDEENCRFNSRPLNLFETLVKTYRDSGSAPFVFDLLIKACLDS 173
Query: 172 KNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSD--- 228
K K++ ++IVRML+SRG+S KVST N+LI V + +GV GY IYRE F LD +
Sbjct: 174 K---KLDPSIEIVRMLLSRGISPKVSTLNSLISRVCKSRGVDEGYAIYREFFRLDEENNE 230
Query: 229 -ATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSV 287
+ G G RV PNVHT+N LM+ Y++G E+VE +W+EM + +P+ YSYSV
Sbjct: 231 ISKRGSG------FRVTPNVHTYNDLMLCCYQDGLVERVEKIWIEM-KCNYKPNAYSYSV 283
Query: 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG 347
LMA FC+E RM +AEKLWEE+R + +E DVV+YNTIIGGFC IG++ RAEEFFREM ++G
Sbjct: 284 LMATFCDEGRMGDAEKLWEELRSEKIEPDVVSYNTIIGGFCTIGDVGRAEEFFREMAVAG 343
Query: 348 VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEAL 407
V +++ T+EHLV GYC GDVDSA+LVY DM R P+ ST++V+I LCDK RV E+L
Sbjct: 344 VGTTASTYEHLVKGYCNIGDVDSAVLVYKDMARSDLRPDASTLDVMIRLLCDKGRVRESL 403
Query: 408 DILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDG 467
+ ++ V KF L P EKSY LIKGLC +G+MEEALKVQAEMVGKGF+P+ EIY AF+DG
Sbjct: 404 EFVRCAVGKFDLIPMEKSYEALIKGLCFDGRMEEALKVQAEMVGKGFQPNSEIYGAFVDG 463
Query: 468 YMKEGNVEMATMLRKEMFENQVR 490
Y++ GN EMA LRKEM +NQ++
Sbjct: 464 YVRHGNEEMAEALRKEMLQNQMQ 486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226656|ref|NP_179197.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75267579|sp|Q9XIM8.1|PP155_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g15980 gi|5306237|gb|AAD41970.1| hypothetical protein [Arabidopsis thaliana] gi|330251359|gb|AEC06453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 263/502 (52%), Positives = 348/502 (69%), Gaps = 15/502 (2%)
Query: 1 MAVQILKHIIFSVSKPKPKPQLLSQFSTSSSTPPSDQSHNLIATVVSLLTHHRSKSRWNH 60
M+ IL+ I+ KPKP L T+ S+PPS S LI+ VS+LTHHRSKSRW+
Sbjct: 1 MSTSILRRILDPTRKPKPDAILSISLLTTVSSPPSPPSDPLISDAVSILTHHRSKSRWST 60
Query: 61 LLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARL 120
L SL SG TP+QFS+I L L+NNPHL+LRFF FT+ SLC H S +T+IHILSR+RL
Sbjct: 61 LRSLQPSGFTPSQFSEITLCLRNNPHLSLRFFLFTRRYSLCSHDTHSCSTLIHILSRSRL 120
Query: 121 IGPARDVIRVALR----SPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEK 176
A ++IR+ALR + D LK+F L+K+Y CGSAPFVFDLLIK CL+ K +
Sbjct: 121 KSHASEIIRLALRLAATDEDEDRVLKVFRSLIKSYNRCGSAPFVFDLLIKSCLDSK---E 177
Query: 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236
I+ V ++R L SRG++ ++STCNALI EVSR +G +GY++YREVFGLD + +
Sbjct: 178 IDGAVMVMRKLRSRGINAQISTCNALITEVSRRRGASNGYKMYREVFGLDD---VSVDEA 234
Query: 237 VKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR-LGCEPDCYSYSVLMAVFCEE 295
K + +++PN TFN++MV FYREG E VE +W EM +GC P+ YSY+VLM +C
Sbjct: 235 KKMIGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCAR 294
Query: 296 RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355
M EAEK+WEEM+ + V +D+VAYNT+IGG C E+ +A+E FR+MGL G+E + +T+
Sbjct: 295 GLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTY 354
Query: 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR---RVFEALDILKA 412
EHLVNGYC+AGDVDS ++VY +M RKGFE +G TIE L+ LCD R RV EA DI+K
Sbjct: 355 EHLVNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKD 414
Query: 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG 472
V + +P+ Y L+K LCE+GKM+ AL +QAEMVGKGF+PS E Y AFIDGY G
Sbjct: 415 AVREAMFYPSRNCYELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQETYRAFIDGYGIVG 474
Query: 473 NVEMATMLRKEMFEN-QVRQED 493
+ E + +L EM E+ ++R E+
Sbjct: 475 DEETSALLAIEMAESLKLRAEE 496
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449502417|ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/462 (55%), Positives = 324/462 (70%), Gaps = 20/462 (4%)
Query: 42 IATVVSLLTHHRSKSRWNHLLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLC 101
I+TVVS+LTH RSKSRW L SLC +G P +FS I L +KNNPHLALRFF +TQ+KSLC
Sbjct: 43 ISTVVSVLTHQRSKSRWRFLNSLCPNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLC 102
Query: 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPK--------------LKLFEVL 147
H+L SY+T+IHIL+R RL A+DVI+ A+R+ + + LKLFE L
Sbjct: 103 NHNLISYSTLIHILARGRLRTHAKDVIQTAIRAAQLEDSDNYSKTERFSPSRPLKLFETL 162
Query: 148 VKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVS 207
VKTY+ CGSAPFVFDLLIK L+ K K+++ ++IVRML SRG+S +VST N+LI VS
Sbjct: 163 VKTYKRCGSAPFVFDLLIKALLDSK---KLDSSIEIVRMLRSRGISPQVSTLNSLILLVS 219
Query: 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVE 267
+ +G Y I+REVFGLD + + VK RV PNVHTFN LM FYR+G +V+
Sbjct: 220 KCQGANVAYAIFREVFGLDCEIEE---EHVKLKGRVSPNVHTFNTLMDCFYRDGFVGRVK 276
Query: 268 DVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF 327
++W ++A P+ YSYS+LM V CEE+R EAE+LWEEM+ K +E DVVAYNTIIGGF
Sbjct: 277 EIWDQLADSNSTPNSYSYSILMTVLCEEKRTGEAEELWEEMKMKKLEPDVVAYNTIIGGF 336
Query: 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG 387
C+ G RAEEF+REM LSG+ES+ T EHL+NGYC GDVDSA+LVY DM RK F
Sbjct: 337 CKAGHTHRAEEFYREMELSGIESTFSTLEHLINGYCDTGDVDSALLVYKDMRRKQFSLNA 396
Query: 388 STIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQA 447
ST+E LI LC +RR+ EALD+ + PT +++ LI LC+EGK+E A K+QA
Sbjct: 397 STLEGLIRMLCAERRLLEALDVFGFAIEYSSFCPTMETFEILINELCQEGKIEGAFKLQA 456
Query: 448 EMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489
+MVGKGF+P+L+IY +FID Y KEGN EM L KEM E Q+
Sbjct: 457 QMVGKGFKPNLKIYQSFIDAYTKEGNAEMVEKLWKEMHEIQL 498
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455312|ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Cucumis sativus] gi|449472579|ref|XP_004153637.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/462 (55%), Positives = 324/462 (70%), Gaps = 20/462 (4%)
Query: 42 IATVVSLLTHHRSKSRWNHLLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLC 101
I+TVVS+LTH RSKSRW L SLC +G P +FS I L +KNNPHLALRFF +TQ+KSLC
Sbjct: 43 ISTVVSVLTHQRSKSRWRFLNSLCPNGFDPGEFSDILLQIKNNPHLALRFFLWTQNKSLC 102
Query: 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPK--------------LKLFEVL 147
H+L SY+T+IHIL+R RL A+DVI+ A+R+ + + LKLFE L
Sbjct: 103 NHNLISYSTLIHILARGRLRTHAKDVIQTAIRAAQLEDSDNYSKTERFSPSRPLKLFETL 162
Query: 148 VKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVS 207
VKTY+ CGSAPFVFDLLIK L+ K K+++ ++IVRML SRG+S +VST N+LI VS
Sbjct: 163 VKTYKRCGSAPFVFDLLIKALLDSK---KLDSSIEIVRMLRSRGISPQVSTLNSLILLVS 219
Query: 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVE 267
+ +G Y I+REVFGLD + + VK RV PNVHTFN LM FYR+G +V+
Sbjct: 220 KCQGANVAYAIFREVFGLDCEIEE---EHVKLKGRVSPNVHTFNTLMDCFYRDGFAGRVK 276
Query: 268 DVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF 327
++W ++A P+ YSYS+LM V CEE+R EAE+LWEEM+ K +E DVVAYNTIIGGF
Sbjct: 277 EIWDQLADSNSTPNSYSYSILMTVLCEEKRTGEAEELWEEMKMKKLEPDVVAYNTIIGGF 336
Query: 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG 387
C+ G RAEEF+REM LSG+ES+ T EHL+NGYC GDVDSA+LVY DM RK F
Sbjct: 337 CKAGHTHRAEEFYREMELSGIESTFSTLEHLINGYCDTGDVDSALLVYKDMRRKQFSLNA 396
Query: 388 STIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQA 447
ST+E LI LC +RR+ EALD+ + PT +++ LI LC+EGK+E A K+QA
Sbjct: 397 STLEGLIRMLCAERRLLEALDVFGFAIEYSSFCPTMETFEILINELCQEGKIEGAFKLQA 456
Query: 448 EMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489
+MVG+GF+P+L+IY +FID Y KEGN EM L KEM E Q+
Sbjct: 457 QMVGRGFKPNLKIYQSFIDAYTKEGNAEMVEKLWKEMHEIQL 498
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741402|emb|CBI32533.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/209 (66%), Positives = 166/209 (79%)
Query: 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344
YSVLMA FC+E RM E EKLWEEMR K +EHD++AYNTIIGGFC IGE+ R EE FREM
Sbjct: 90 YSVLMAAFCDEGRMGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREME 149
Query: 345 LSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVF 404
LSG++S+ VT+EHL+NGYC GDVDSA+L+Y DMCRKGF E T++ +I LC+ RRV
Sbjct: 150 LSGIQSTCVTYEHLINGYCEIGDVDSAVLLYKDMCRKGFRAEARTVDGMILLLCNNRRVH 209
Query: 405 EALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAF 464
EAL +L+ + P KSY LIKG CEEGKMEEA K+Q+EMVGKGF+P+LEIYSAF
Sbjct: 210 EALKLLRVAMGNVEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAF 269
Query: 465 IDGYMKEGNVEMATMLRKEMFENQVRQED 493
IDGYMK+GN E+A LRKEMFE Q++QE+
Sbjct: 270 IDGYMKQGNKEIAETLRKEMFETQMQQEE 298
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125536370|gb|EAY82858.1| hypothetical protein OsI_38069 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 253/463 (54%), Gaps = 23/463 (4%)
Query: 36 DQSHNLIATVVSLLTHHRSKSRWNHLLSLCRSGLTP-TQFSQIALGLKNNPHLALRFFSF 94
D H A S LT HRS+S+W+HL SL P + + + L L+ PH+AL F F
Sbjct: 16 DADHPYAAAAASALTSHRSRSKWSHLSSLAVPDPLPASAVAAVPLLLRRRPHVALSFHLF 75
Query: 95 TQHKSLCKHS---LSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTY 151
+ L S L + H+ + +RL A ++ A R + P ++F L TY
Sbjct: 76 ATRRLLPSGSPPPLLLSVSAAHVAAASRLRHAAISLLSSAAR---HYPHSQIFAALAATY 132
Query: 152 RECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKG 211
R SAPFVFDLL+ L + + R +++ G ST AL+ +
Sbjct: 133 RRFASAPFVFDLLLLAYLRSRR--DTLAAASVARRILAAGARPLPSTSAALLRSLPSAAA 190
Query: 212 VISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWV 271
+ ++YRE++ S ++ P VHTFN+L++ FYREG + + V
Sbjct: 191 AL---DMYREIYTRPSSRINS---------QLLPTVHTFNSLLLAFYREGKCDDFKVVLQ 238
Query: 272 EMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331
EM R C + +YS+ MA +C+ + + +A LW+EM + ++ DV AYNT+I G+C +G
Sbjct: 239 EMDRYSCVHNVCTYSIRMAAYCDSKEVEKARGLWDEMVEGGIQPDVAAYNTMISGYCGVG 298
Query: 332 EMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIE 391
E+ AEE F++M + G++ S TFE L G+CR GD+D+A+LV DM R+GF +E
Sbjct: 299 EVGMAEEMFKDMEMGGIDPSVTTFEWLARGHCRVGDIDAAMLVRADMSRRGFRMAAEVVE 358
Query: 392 VLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451
++ LC K+RV EAL +LK + K P+ + Y LI+ LCE+G++E A+++QAEM G
Sbjct: 359 EVVNVLCQKKRVKEALGVLKEEMRKEEFVPSRECYEVLIRELCEQGEVEVAMRLQAEMAG 418
Query: 452 KGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQEDG 494
GF+ E+Y AF+ Y K + EMA LRKE+ + + EDG
Sbjct: 419 MGFKAGSEVYCAFVCAYEKAEDYEMAEKLRKEL--SVINIEDG 459
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326490157|dbj|BAJ94152.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 168/447 (37%), Positives = 240/447 (53%), Gaps = 17/447 (3%)
Query: 49 LTHHRSKSRWNHLLSLCRSGLTP-TQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSS 107
LT HR+KS+W+ L SL P + S + L L++ PH+AL F F + L S
Sbjct: 38 LTSHRAKSKWSQLASLPLPDPLPASAVSAVLLLLRHRPHVALSFHQFALRRLLPARSAPP 97
Query: 108 YATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKC 167
A R I V + + ++F L TYR SAPFVFDLL+
Sbjct: 98 LVLSASAAHVAAASRLRRAAISVLSSATCHYSPSQIFNALAATYRRFASAPFVFDLLLLA 157
Query: 168 CLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDS 227
L + + I R ++ G ST L + + S E+Y +++
Sbjct: 158 YLRSRR--EPLAAASIARRYLASGACPLPSTVALLFRSLPCAE---SALEMYHQIY---- 208
Query: 228 DATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSV 287
G RV++ P TFN+L++ FYR G E + V EM R C+ + +Y++
Sbjct: 209 ---TRPGPRTNRVLQ--PTAQTFNSLLLAFYRHGKSEDFDIVLDEMDRYSCKHNVGTYNI 263
Query: 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG 347
MA C++R M +A LW+EM ++ DV +YNT+IGG+C +M AEE +++M +SG
Sbjct: 264 RMAACCDDREMEKARGLWDEMVQGGIQPDVTSYNTMIGGYCAARDMGMAEEMYKDMEISG 323
Query: 348 VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEAL 407
E S TFE LV G+CR GDVD+A+LV D+ R+GF+ +E ++ LC KRRV EAL
Sbjct: 324 TEPSVTTFEWLVRGHCRIGDVDAAMLVRVDLRRRGFDMAAEVVEEMVDRLCRKRRVEEAL 383
Query: 408 DILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDG 467
DIL+A + + P+ SY LI+G CEEG++E A+++QAEMVGKGF+ E+Y AF+
Sbjct: 384 DILRAEMKREEFTPSRGSYEVLIRGFCEEGEVEVAMRLQAEMVGKGFKAGGEVYHAFVCA 443
Query: 468 YMKEGNVEMATMLRKEMFENQVRQEDG 494
Y K + EM LRKEM V EDG
Sbjct: 444 YEKAEDHEMVERLRKEM--AAVGIEDG 468
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| TAIR|locus:2044566 | 498 | AT2G15980 "AT2G15980" [Arabido | 0.985 | 0.977 | 0.513 | 3.2e-129 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.704 | 0.614 | 0.284 | 6.5e-39 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.876 | 0.690 | 0.255 | 2.1e-37 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.763 | 0.653 | 0.282 | 1.6e-36 | |
| TAIR|locus:2064707 | 536 | AT2G06000 "AT2G06000" [Arabido | 0.803 | 0.740 | 0.266 | 1.7e-36 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.763 | 0.598 | 0.287 | 4.9e-36 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.763 | 0.599 | 0.295 | 8e-36 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.763 | 0.598 | 0.282 | 1.1e-35 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.593 | 0.392 | 0.302 | 1.6e-33 | |
| TAIR|locus:2116372 | 521 | AT4G26680 "AT4G26680" [Arabido | 0.892 | 0.846 | 0.235 | 5.1e-35 |
| TAIR|locus:2044566 AT2G15980 "AT2G15980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
Identities = 258/502 (51%), Positives = 340/502 (67%)
Query: 1 MAVQILKHIIFSVSKPKPKXXXXXXXXXXXXXXXXXXXHNLIATVVSLLTHHRSKSRWNH 60
M+ IL+ I+ KPKP LI+ VS+LTHHRSKSRW+
Sbjct: 1 MSTSILRRILDPTRKPKPDAILSISLLTTVSSPPSPPSDPLISDAVSILTHHRSKSRWST 60
Query: 61 LLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARL 120
L SL SG TP+QFS+I L L+NNPHL+LRFF FT+ SLC H S +T+IHILSR+RL
Sbjct: 61 LRSLQPSGFTPSQFSEITLCLRNNPHLSLRFFLFTRRYSLCSHDTHSCSTLIHILSRSRL 120
Query: 121 IGPARDVIRVALR----SPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEK 176
A ++IR+ALR + D LK+F L+K+Y CGSAPFVFDLLIK CL+ K +
Sbjct: 121 KSHASEIIRLALRLAATDEDEDRVLKVFRSLIKSYNRCGSAPFVFDLLIKSCLDSK---E 177
Query: 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236
I+ V ++R L SRG++ ++STCNALI EVSR +G +GY++YREVFGLD D + K
Sbjct: 178 IDGAVMVMRKLRSRGINAQISTCNALITEVSRRRGASNGYKMYREVFGLD-DVSVDEAK- 235
Query: 237 VKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR-LGCEPDCYSYSVLMAVFCEE 295
K + +++PN TFN++MV FYREG E VE +W EM +GC P+ YSY+VLM +C
Sbjct: 236 -KMIGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCAR 294
Query: 296 RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355
M EAEK+WEEM+ + V +D+VAYNT+IGG C E+ +A+E FR+MGL G+E + +T+
Sbjct: 295 GLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTY 354
Query: 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR---RVFEALDILKA 412
EHLVNGYC+AGDVDS ++VY +M RKGFE +G TIE L+ LCD R RV EA DI+K
Sbjct: 355 EHLVNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKD 414
Query: 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG 472
V + +P+ Y L+K LCE+GKM+ AL +QAEMVGKGF+PS E Y AFIDGY G
Sbjct: 415 AVREAMFYPSRNCYELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQETYRAFIDGYGIVG 474
Query: 473 NVEMATMLRKEMFEN-QVRQED 493
+ E + +L EM E+ ++R E+
Sbjct: 475 DEETSALLAIEMAESLKLRAEE 496
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 103/362 (28%), Positives = 179/362 (49%)
Query: 136 ENDPKLKL----FEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRG 191
EN K+ L F +L+K E G FDLLI+ E + ++ +G
Sbjct: 154 ENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELT-EFGFSPNVVIYTTLIDGCCKKG 212
Query: 192 LSVKVSTCNALIWEVSRGKGVISGYEIYREVF-GLDSDATAGIGKDVKRVVR---VRPNV 247
++ L +E+ + G+++ Y + GL + G ++ ++ V PN+
Sbjct: 213 ---EIEKAKDLFFEMGK-LGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNL 268
Query: 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEE 307
+T+N +M ++G + V+ EM G + +Y+ L+ C E ++ EA K+ ++
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQ 328
Query: 308 MRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367
M+ + +++ YNT+I GFC +G++ +A R++ G+ S VT+ LV+G+CR GD
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGD 388
Query: 368 VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYM 427
A + +M +G +P T +LI + +A+ L+ + + GL P +Y
Sbjct: 389 TSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQ-LRLSMEELGLVPDVHTYS 447
Query: 428 FLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487
LI G C +G+M EA ++ MV K EP+ IY+ I GY KEG+ A L KEM E
Sbjct: 448 VLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEK 507
Query: 488 QV 489
++
Sbjct: 508 EL 509
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 2.1e-37, P = 2.1e-37
Identities = 119/466 (25%), Positives = 222/466 (47%)
Query: 48 LLTHHRSKSRWNHLLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSS 107
LL RS S+W H++ LTP+ S L L P+LA F+F H L + +
Sbjct: 50 LLESIRS-SQW-HIVEHVADKLTPSLVSTTLLSLVKTPNLA---FNFVNHIDLYRLDFQT 104
Query: 108 YATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGS-APFVFDLLIK 166
I ++S+ P +++ + S +N + LF+ LV + + + +FDLL++
Sbjct: 105 QCLAIAVISKLSSPKPVTQLLKEVVTSRKNSIR-NLFDELVLAHDRLETKSTILFDLLVR 163
Query: 167 CCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLD 226
CC +++ +++ C +++ +G K TCN ++ +SR + + + Y +++ ++
Sbjct: 164 CCCQLRMVDEAIECFYLMK---EKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRME 220
Query: 227 SDA---TAGI--------GK--------DVKRVVRVRPNVHTFNALMVGFYREGAFEKVE 267
+ T I GK + V ++P + T+N L+ GF G E
Sbjct: 221 IKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGAR 280
Query: 268 DVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF 327
+ EM G +PD +Y+ +++ C E R A ++ EM++ + D V+YN +I G
Sbjct: 281 LIISEMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGC 337
Query: 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG 387
G++ A + EM G+ + T+ L++G +++A ++ ++ KG +
Sbjct: 338 SNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDS 397
Query: 388 STIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQA 447
T +LI C +A L ++ G+ PT+ +Y LI LC + K EA ++
Sbjct: 398 VTYNILINGYCQHGDAKKAF-ALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFE 456
Query: 448 EMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQED 493
++VGKG +P L + + +DG+ GN++ A L KEM + +D
Sbjct: 457 KVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDD 502
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.6e-36, P = 1.6e-36
Identities = 112/396 (28%), Positives = 195/396 (49%)
Query: 107 SYATIIHILSRARLIGPARDVIRVALRSPEN--DPKLKLFEVLVKTYRECGSAPFVFDLL 164
++ T+IH L L A + + + R + P L + V+V + G F+LL
Sbjct: 192 TFTTLIHGLF---LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 248
Query: 165 IKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFG 224
K +E KIE V I ++ + ++ KGV Y +
Sbjct: 249 NK--MEAA---KIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 303
Query: 225 LD------SDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278
SDA+ + ++R ++ PNV TFNAL+ F +EG + E ++ EM +
Sbjct: 304 CLCNYERWSDASRLLSDMIER--KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSI 361
Query: 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338
+PD ++YS L+ FC R+ EA+ ++E M K+ +VV YNT+I GFC+ + E
Sbjct: 362 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVE 421
Query: 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398
FREM G+ ++VT+ L++G+ +A D D+A +V+ M G P T L+ LC
Sbjct: 422 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 481
Query: 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458
++ +A+ + + + + + PT +Y +I+G+C+ GK+E+ + + KG +P +
Sbjct: 482 KNGKLEKAMVVFEY-LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDV 540
Query: 459 EIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQEDG 494
IY+ I G+ ++G E A L ++M E+ + G
Sbjct: 541 IIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSG 576
|
|
| TAIR|locus:2064707 AT2G06000 "AT2G06000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 114/428 (26%), Positives = 204/428 (47%)
Query: 69 LTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVI 128
L P ++ L NNPH+ RF+ F++ K +HS +Y + L +A L A +
Sbjct: 67 LNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMF 126
Query: 129 RVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIK------CCLEVKNIEKIETCVD 182
++S P +L LV ++ E G F LL++ CC+ V ++ + T V
Sbjct: 127 E-CMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSL--LNTLVK 183
Query: 183 IVRMLMSRGL---SVKVSTCN-ALIWEVS-RGKGVISGYEIYREVFGLDSDATAGIGKDV 237
+ R+ + L ++ +CN + + RG + E E+ G+ S G G +
Sbjct: 184 LDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMS----GFGCE- 238
Query: 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG--CEPDCYSYSVLMAVFCEE 295
P++ T+N L+ GF + K +++ ++ + G C PD +Y+ +++ +C+
Sbjct: 239 -------PDIVTYNTLIQGFCKSNELNKASEMFKDV-KSGSVCSPDVVTYTSMISGYCKA 290
Query: 296 RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355
+MREA L ++M + V +N ++ G+ + GEM AEE +M G VTF
Sbjct: 291 GKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTF 350
Query: 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVV 415
L++GYCR G V ++ +M +G P T +LI LC++ R+ +A ++L ++
Sbjct: 351 TSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELL-GQLA 409
Query: 416 KFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNV- 474
+ P Y +I G C+ GK+ EA + EM K +P ++ I G+ +G +
Sbjct: 410 SKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMF 469
Query: 475 EMATMLRK 482
E ++ K
Sbjct: 470 EAVSIFHK 477
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 4.9e-36, P = 4.9e-36
Identities = 114/396 (28%), Positives = 198/396 (50%)
Query: 107 SYATIIHILSRARLIGPARDVI-RVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLI 165
++ T+IH L A +I R+ + + P L + V+V + G F+LL
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQ--PDLVTYGVVVNGLCKRGDTDLAFNLLN 245
Query: 166 KCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNAL-IWEVSRGKGVISGYEIYREV-- 222
K +E K+E V I ++ GL +AL +++ KG+ Y +
Sbjct: 246 K--MEQG---KLEPGVLIYNTIID-GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
Query: 223 ----FGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278
+G SDA+ + ++R ++ P+V TF+AL+ F +EG + E ++ EM +
Sbjct: 300 CLCNYGRWSDASRLLSDMIER--KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357
Query: 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338
+P +YS L+ FC R+ EA++++E M K+ DVV YNT+I GFC+ + E
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417
Query: 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398
FREM G+ ++VT+ L+ G +AGD D A ++ +M G P T L+ LC
Sbjct: 418 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477
Query: 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458
++ +A+ + + + + + PT +Y +I+G+C+ GK+E+ + + KG +P +
Sbjct: 478 KNGKLEKAMVVFEY-LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV 536
Query: 459 EIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQEDG 494
Y+ I G+ ++G+ E A L KEM E+ G
Sbjct: 537 VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 8.0e-36, P = 8.0e-36
Identities = 117/396 (29%), Positives = 197/396 (49%)
Query: 107 SYATIIHILSRARLIGPARDVI-RVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLI 165
++ T+IH L A +I R+ R + P L + +V + G LL
Sbjct: 187 TFNTLIHGLFLHNKASEAVALIDRMVARGCQ--PDLFTYGTVVNGLCKRGDIDLALSLLK 244
Query: 166 KCCLEVKNIEKIETCVDIVRMLMSRGLSVK-VSTCNALIWEVSRGKGVISGYEIYREV-- 222
K +E K KIE V I ++ + K V+ L E+ KG+ Y +
Sbjct: 245 K--ME-KG--KIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN-KGIRPNVVTYNSLIR 298
Query: 223 ----FGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278
+G SDA+ + ++R ++ PNV TF+AL+ F +EG + E ++ EM +
Sbjct: 299 CLCNYGRWSDASRLLSDMIER--KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356
Query: 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338
+PD ++YS L+ FC R+ EA+ ++E M K+ +VV YNT+I GFC+ + E
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 416
Query: 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398
FREM G+ ++VT+ L+ G +AGD D A ++ M G P+ T +L+ LC
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476
Query: 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458
++ +AL + + + K + P +Y +I+G+C+ GK+E+ + + KG +P++
Sbjct: 477 KYGKLEKALVVFEY-LQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 535
Query: 459 EIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQEDG 494
IY+ I G+ ++G E A L +EM E+ G
Sbjct: 536 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSG 571
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 112/396 (28%), Positives = 201/396 (50%)
Query: 107 SYATIIHILSRARLIGPARDVI-RVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLI 165
++ T+IH L R A ++ R+ ++ + P L + ++V + G LL
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVKGCQ--PDLVTYGIVVNGLCKRGDIDLALSLLK 245
Query: 166 KCCLEVKNIEKIETCVDIVRMLMSRGLSVK-VSTCNALIWEVSRGKGVISGYEIYREV-- 222
K +E KIE V I ++ + K V+ L E+ KG+ Y +
Sbjct: 246 K--MEQG---KIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDN-KGIRPNVVTYNSLIR 299
Query: 223 ----FGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278
+G SDA+ + ++R ++ PNV TF+AL+ F +EG + E ++ EM +
Sbjct: 300 CLCNYGRWSDASRLLSDMIER--KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Query: 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338
+PD ++YS L+ FC R+ EA+ ++E M K+ +VV YNT+I GFC+ + E
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGME 417
Query: 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398
FREM G+ ++VT+ L++G+ +A + D+A +V+ M G P+ T +L+ LC
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLC 477
Query: 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458
+ +V AL + + + + + P +Y +I+G+C+ GK+E+ + + KG +P++
Sbjct: 478 NNGKVETALVVFEY-LQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 536
Query: 459 EIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQEDG 494
Y+ + G+ ++G E A L +EM E + G
Sbjct: 537 VTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSG 572
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 1.6e-33, P = 1.6e-33
Identities = 94/311 (30%), Positives = 156/311 (50%)
Query: 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYE-IYREVFGLDSDATAGIGK 235
I+ + IV + + G V + NA++ R K IS E +++E+ L+S
Sbjct: 150 IDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM--LES-------- 199
Query: 236 DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEE 295
+V PNV T+N L+ GF G + ++ +M GC P+ +Y+ L+ +C+
Sbjct: 200 ------QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL 253
Query: 296 RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355
R++ + KL M K +E ++++YN +I G C G M EM G VT+
Sbjct: 254 RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313
Query: 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVV 415
L+ GYC+ G+ A++++ +M R G P T LI +C + A++ L V
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 416 KFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVE 475
+ GL P E++Y L+ G ++G M EA +V EM GF PS+ Y+A I+G+ G +E
Sbjct: 374 R-GLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 476 MATMLRKEMFE 486
A + ++M E
Sbjct: 433 DAIAVLEDMKE 443
|
|
| TAIR|locus:2116372 AT4G26680 "AT4G26680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 110/467 (23%), Positives = 210/467 (44%)
Query: 46 VSLLTHHRSKSRWNHLLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSL 105
V++ H +S W+ L L L + + L ++ + L+L FF++ + ++ HSL
Sbjct: 57 VNVAHSHLIQSDWDKLNKLS-DHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSL 115
Query: 106 SSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLI 165
++A ++H L++ R A ++R L + D K+F+ L+ +YREC S P VFD L
Sbjct: 116 ETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLF 175
Query: 166 KCCLEVKNIEK----------------IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRG 209
K +K +E+C + L+ +G +V E+ R
Sbjct: 176 KTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQG---RVDIALRFYREMRRC 232
Query: 210 KGVISGYEIYREVFGL--DSDATAGIG--KDVKRVVRVRPNVHTFNALMVGFYREGAFEK 265
K + Y + + G GI +D++R+ R ++N L+ G +G
Sbjct: 233 KISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERL-GFRATDVSYNTLIAGHCEKGLLSS 291
Query: 266 VEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325
+ M + G +P+ +++ L+ FC +++EA K++ EM+ NV + V YNT+I
Sbjct: 292 ALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLIN 351
Query: 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385
G+ + G+ A F+ +M +G++ +T+ L+ G C+ A ++ ++ P
Sbjct: 352 GYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVP 411
Query: 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKV 445
ST LI C ++ ++ K+ +++ G P E+++ L+ C + A +V
Sbjct: 412 NSSTFSALIMGQCVRKNADRGFELYKS-MIRSGCHPNEQTFNMLVSAFCRNEDFDGASQV 470
Query: 446 QAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQE 492
EMV + +G +G ++ L +EM + QE
Sbjct: 471 LREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEGKKFLQE 517
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9XIM8 | PP155_ARATH | No assigned EC number | 0.5239 | 0.9858 | 0.9779 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 494 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 2e-15
Identities = 77/360 (21%), Positives = 145/360 (40%), Gaps = 63/360 (17%)
Query: 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYR 220
F++L+ C ++I+ + ++R++ GL LI ++ V + +E++
Sbjct: 440 FNMLMSVCASSQDIDG---ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496
Query: 221 EVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEP 280
E+ AG V NVHTF AL+ G R G K + M +P
Sbjct: 497 EM------VNAG----------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540
Query: 281 DCYSYSVLMAVFCEERRMREAEKLWEEMR--DKNVEHDVVAYNTIIGGFCEIGEMARAEE 338
D ++ L++ + + A + EM+ ++ D + ++ G++ RA+E
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398
++ + ++ + + VN + GD D A+ +Y+DM +KG +P+ EV L
Sbjct: 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----EVFFSALV 656
Query: 399 D----KRRV---FEALDILKARVVKFG-------------------------------LF 420
D + FE L + + +K G L
Sbjct: 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716
Query: 421 PTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATML 480
PT + LI LCE ++ +AL+V +EM G P+ YS + ++ + ++ L
Sbjct: 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 2e-13
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328
PD +Y+ L+ +C++ ++ EA KL+ EM+ + ++ +V Y+ +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 3e-12
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364
DVV YNT+I G+C+ G++ A + F EM G++ + T+ L++G C+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 6e-12
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFC 293
P+V T+N L+ G+ ++G E+ ++ EM + G +P+ Y+YS+L+ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 8e-11
Identities = 52/219 (23%), Positives = 102/219 (46%), Gaps = 5/219 (2%)
Query: 274 ARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333
A+L P ++++LM+V + + A ++ +++ ++ D Y T+I + G++
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVL 393
E F EM +GVE++ TF L++G RAG V A Y M K +P+ L
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 394 I---GELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450
I G+ R F+ L +KA + P + L+K G+++ A +V +
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHP--IDPDHITVGALMKACANAGQVDRAKEVYQMIH 606
Query: 451 GKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489
+ + E+Y+ ++ ++G+ + A + +M + V
Sbjct: 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-09
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 351 SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD 399
VT+ L++GYC+ G V+ A+ ++N+M ++G +P T +LI LC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 5e-09
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 421 PTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK 470
P +Y LI G C++GK+EEALK+ EM +G +P++ YS IDG K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 43/244 (17%)
Query: 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAE 302
++PN T A + R GA +++ + R G D + + L+ ++ RM A
Sbjct: 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA- 543
Query: 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362
W + E DVV++N ++ G+ G+ + A E F M SGV VTF L+
Sbjct: 544 --WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599
Query: 363 CRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT 422
R+G M +G E F +++ K+ + P
Sbjct: 600 SRSG-----------MVTQGLE------------------YFHSME------EKYSITPN 624
Query: 423 EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRK 482
K Y ++ L GK+ EA +M P ++ A ++ +VE+ + +
Sbjct: 625 LKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQ 681
Query: 483 EMFE 486
+FE
Sbjct: 682 HIFE 685
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 4e-08
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 311 KNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343
K ++ DVV YNT+I G C G + A E EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 9e-08
Identities = 54/246 (21%), Positives = 110/246 (44%), Gaps = 11/246 (4%)
Query: 245 PNVHTFNALMVGFYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMRE 300
P + TFN LM +GA V + G + DC Y+ L++ + ++
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALR----VLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 301 AEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN 360
+++ EM + VE +V + +I G G++A+A + M V+ V F L++
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 361 GYCRAGDVDSAILVYNDMC--RKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFG 418
++G VD A V +M +P+ T+ L+ + +V A ++ + + ++
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM-IHEYN 609
Query: 419 LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMAT 478
+ T + Y + ++G + AL + +M KG +P +SA +D G+++ A
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 479 MLRKEM 484
+ ++
Sbjct: 670 EILQDA 675
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 28/143 (19%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 269 VWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328
++ +M + G +PD +S L+ V + +A ++ ++ R + ++ V+Y++++G
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGS 388
+A E + ++ + + T L+ C + A+ V ++M R G P
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755
Query: 389 TIEVLIGELCDKRRVFE-ALDIL 410
T +L+ +++ + LD+L
Sbjct: 756 TYSILL-VASERKDDADVGLDLL 777
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 52/270 (19%)
Query: 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS--VLMAVFCEERRMREAEKL 304
T++AL+ + V+ V+ + G EPD Y + +LM V C + +A +L
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG--MLIDARRL 180
Query: 305 WEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE-------- 356
++EM ++N+ ++ TIIGG + G A FREM G ++ TF
Sbjct: 181 FDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 357 ----------H-----------------LVNGYCRAGDVDSAILVYNDMCRKGFEPEGST 389
H L++ Y + GD++ A V++ M PE +T
Sbjct: 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM------PEKTT 290
Query: 390 I--EVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQA 447
+ ++ EAL + + G+ + ++ +I+ +E A + A
Sbjct: 291 VAWNSMLAGYALHGYSEEALCLYYE-MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 448 EMVGKGFEPSLEIYSAFIDGYMKEGNVEMA 477
++ GF + +A +D Y K G +E A
Sbjct: 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMR 309
G +PD +Y+ L+ C R+ EA +L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 2/176 (1%)
Query: 226 DSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSY 285
D D I D+K+ V+P+ F+AL+ G +K ++ + + G + SY
Sbjct: 629 DWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 286 SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345
S LM + ++A +L+E+++ + V N +I CE ++ +A E EM
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 346 SGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR 401
G+ +++T+ L+ R D D + + + G +P + G LC +R
Sbjct: 748 LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCLRR 802
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 353 VTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385
VT+ L++G C+AG V+ A+ ++ +M +G EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 346 SGVESSSVTFEHLVNGYCRAGDVDSAILVYNDM 378
G++ VT+ L++G CRAG VD A+ + ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317
+Y+ L+ C+ R+ EA +L++EM+++ +E DV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEM 308
TF+ ++ F R E + + R G D + + L+ ++ + RM +A +++ M
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
Query: 309 RDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDV 368
KN ++++N +I G+ G +A E F M GV + VTF +++ +G
Sbjct: 387 PRKN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 369 DSAILVYNDMCR 380
+ ++ M
Sbjct: 443 EQGWEIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 8e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 353 VTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385
T+ L+ +AGD D A+ V +M G +P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNV 313
+Y+ L++ +C+ ++ EA +L++EM++K V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 15/159 (9%)
Query: 297 RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356
EAEK++ M K D V++ +I G+ + G +A E + M V +T
Sbjct: 338 SWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393
Query: 357 HLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVK 416
+++ GD+D + ++ RKG LI + + +AL++
Sbjct: 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH----- 448
Query: 417 FGLFPTEK---SYMFLIKGLCEEGKMEEALKVQAEMVGK 452
EK S+ +I GL + EAL +M+
Sbjct: 449 ---NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 21/221 (9%)
Query: 274 ARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333
+ G D + L+ ++ + + +A +++ M +K VA+N+++ G+ G
Sbjct: 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYS 306
Query: 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE--GSTIE 391
A + EM SGV TF ++ + R ++ A + + R GF + +T
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 392 VLI----GELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQA 447
V + G + D R VF+ + ++ S+ LI G G+ +A+++
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPR--KNLI---------SWNALIAGYGNHGRGTKAVEMFE 415
Query: 448 EMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488
M+ +G P+ + A + G E + + M EN
Sbjct: 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 353 VTFEHLVNGYCRAGDVDSAILVYNDMCRKGF 383
VT+ L++GYC+AG ++ A+ ++ +M KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 25/201 (12%)
Query: 300 EAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV 359
EA L+ EMRD V D ++ +I F + + A++ + +G V LV
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367
Query: 360 NGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGL 419
+ Y + G ++ A V++ M RK + LI + R +A+++ + R++ G+
Sbjct: 368 DLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFE-RMIAEGV 422
Query: 420 FPTEKSYMFLIK-----GLCEEGK-----MEEALKVQAEMVGKGFEPSLEIYSAFIDGYM 469
P +++ ++ GL E+G M E +++ P Y+ I+
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK---------PRAMHYACMIELLG 473
Query: 470 KEGNVEMA-TMLRKEMFENQV 489
+EG ++ A M+R+ F+ V
Sbjct: 474 REGLLDEAYAMIRRAPFKPTV 494
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGV 348
V YN++I G+C+ G++ A E F+EM GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 425 SYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS 457
+Y LI GLC+ G++EEAL++ EM +G EP
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 58/243 (23%), Positives = 92/243 (37%), Gaps = 38/243 (15%)
Query: 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR-MREAEKLWE 306
H N+ + G E+ + M L D +Y L + CE +R + E ++
Sbjct: 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRL-CEWKRAVEEGSRVCS 110
Query: 307 EMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366
+ V N ++ F GE+ A F +M + S +V LV GY +AG
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNV----LVGGYAKAG 166
Query: 367 DVDSAILVYNDMCRKGFEPEGSTIEVLI---GELCDKRR------------------VFE 405
D A+ +Y+ M G P+ T ++ G + D R V
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226
Query: 406 AL--------DILKARVVKFGLFPTEK--SYMFLIKGLCEEGKMEEALKVQAEMVGKGFE 455
AL D++ AR+V F P S+ +I G E G+ E L++ M +
Sbjct: 227 ALITMYVKCGDVVSARLV-FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 456 PSL 458
P L
Sbjct: 286 PDL 288
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVE 349
V YNT+I G C+ G + A E F+EM G+E
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 417 FGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450
GL P +Y LI GLC G+++EA+++ EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.002
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 452 KGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEM 484
KG +P + Y+ IDG + G V+ A L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 425 SYMFLIKGLCEEGKMEEALKVQAEMVGKGF 454
+Y LI G C+ GK+EEAL++ EM KG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC 282
T+N L+ G + G E+ +++ EM G EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.81 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.62 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.45 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.45 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.34 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.34 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.3 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.24 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.23 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.09 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.03 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.88 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.83 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.8 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.75 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.74 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.74 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.71 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.68 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.65 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.65 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.65 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.64 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.62 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.61 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.53 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.46 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.45 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.44 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.43 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.39 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.32 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.3 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.3 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.29 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.19 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.18 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.17 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.16 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.06 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.99 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.99 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.98 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.98 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.95 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.95 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.87 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.87 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.86 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.82 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.81 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.77 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.77 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.62 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.62 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.58 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.57 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.54 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.53 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.52 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.51 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.51 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.49 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.47 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.42 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.42 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.36 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.35 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.33 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.3 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.21 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.13 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.1 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.1 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.08 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.07 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.05 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.03 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.03 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.02 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.95 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.95 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.9 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.88 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.84 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.83 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.81 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.78 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.78 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.75 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.72 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.55 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.43 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.38 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.21 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.21 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.2 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.16 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.15 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.04 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.78 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.64 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.61 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.61 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.55 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.52 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.49 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.43 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.42 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.33 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.33 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.33 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.29 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.26 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.26 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.2 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.2 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.11 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.96 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.85 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.81 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.79 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.76 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.72 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.41 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.4 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.38 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.04 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.8 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.76 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.75 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.65 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.29 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.22 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.07 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.05 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.92 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.87 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.85 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 92.78 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.74 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.29 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.24 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.04 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.92 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.4 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.35 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.33 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.89 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.77 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.35 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.29 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.13 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.94 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.88 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.6 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.41 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.06 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 88.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.57 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.5 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.74 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.94 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.74 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.12 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.78 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.7 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.11 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.41 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.37 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.33 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.19 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.81 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.77 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.85 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.81 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.51 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.14 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.6 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.48 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.4 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.39 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.08 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.99 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.97 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.9 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.53 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.49 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.42 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 80.21 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=486.19 Aligned_cols=368 Identities=21% Similarity=0.352 Sum_probs=333.7
Q ss_pred cCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHH
Q 011081 83 NNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFD 162 (494)
Q Consensus 83 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (494)
+..+.|+++|..|. .|+..+|+.+|++|++.|+++.|..+|+.|.+.| +.++..+|+
T Consensus 420 g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------------------l~pD~~tyn 476 (1060)
T PLN03218 420 RAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------------------LKADCKLYT 476 (1060)
T ss_pred CCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------------------CCCCHHHHH
Confidence 33444555554443 1555555555555555555555555555555433 346788999
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccc
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVR 242 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
.||.+|++.|+ +++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|
T Consensus 477 sLI~~y~k~G~---vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~----------------~G 537 (1060)
T PLN03218 477 TLISTCAKSGK---VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS----------------KN 537 (1060)
T ss_pred HHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH----------------cC
Confidence 99999999999 999999999999999999999999999999999999999999999965 45
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH--cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR--LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
+.||..+||.||.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 789999999999999999999999999999986 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATML 480 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 480 (494)
|++++|.++|+ .|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++
T Consensus 698 G~~eeA~~lf~-eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 698 KNWKKALELYE-DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999998 67778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccccC
Q 011081 481 RKEMFENQVRQED 493 (494)
Q Consensus 481 ~~~m~~~~~~pd~ 493 (494)
+++|.+.|+.||.
T Consensus 777 ~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 777 LSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHcCCCCCH
Confidence 9999999999873
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-58 Score=474.05 Aligned_cols=370 Identities=19% Similarity=0.307 Sum_probs=350.1
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhH
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVF 161 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (494)
.++++.|+++|++|...+.+.++..+++.++.+|.+.|.+++|..+++.|. .++..+|
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----------------------~pd~~Ty 440 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----------------------NPTLSTF 440 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----------------------CCCHHHH
Confidence 467788888888887766667788888888888888888888888877663 1678899
Q ss_pred HHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccc
Q 011081 162 DLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVV 241 (494)
Q Consensus 162 ~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
+.+|.+|++.|+ +++|.++|+.|.+.|+.||..+|++||.+|++.|+++.|.++|++|.+ .
T Consensus 441 n~LL~a~~k~g~---~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~----------------~ 501 (1060)
T PLN03218 441 NMLMSVCASSQD---IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN----------------A 501 (1060)
T ss_pred HHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH----------------c
Confidence 999999999999 999999999999999999999999999999999999999999999965 4
Q ss_pred ccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHhH
Q 011081 242 RVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD--KNVEHDVVA 319 (494)
Q Consensus 242 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~ 319 (494)
|+.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+
T Consensus 502 Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999976 678999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD 399 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 399 (494)
|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 400 KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.|++++|.++++ .|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+
T Consensus 662 ~G~~eeA~~l~~-eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 662 AGDLDKAFEILQ-DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred CCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999 6778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccC
Q 011081 480 LRKEMFENQVRQED 493 (494)
Q Consensus 480 ~~~~m~~~~~~pd~ 493 (494)
+|++|.+.|+.||.
T Consensus 741 lf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 741 VLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHHHHHcCCCCCH
Confidence 99999999999973
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=469.71 Aligned_cols=399 Identities=16% Similarity=0.258 Sum_probs=342.0
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcC----
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECG---- 155 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 155 (494)
...++++.|+++|.||....++.||..+|+.++.+|++.++++.|.+++..|.+.| ..++..+++.++.+|.++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHH
Confidence 44578999999999998777788999999999999999999999999999999987 6788999999999999987
Q ss_pred ----------CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcC
Q 011081 156 ----------SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGL 225 (494)
Q Consensus 156 ----------~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 225 (494)
++..+|+.+|.+|++.|+ +++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.
T Consensus 177 A~~lf~~m~~~~~~t~n~li~~~~~~g~---~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 177 ARRLFDEMPERNLASWGTIIGGLVDAGN---YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHHHhcCCCCCeeeHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 367899999999999999 9999999999988887777666655554444444444444444444332
Q ss_pred Ccccc-------------cccccccccccc--cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHH
Q 011081 226 DSDAT-------------AGIGKDVKRVVR--VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMA 290 (494)
Q Consensus 226 ~~~~~-------------~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 290 (494)
+.... .|..+++.+.+. ..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 21100 011111222211 356999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS 370 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (494)
+|++.|++++|.++++.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|+.++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999996 5789999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 371 AILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 371 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.+.++.|+.|+..+|++++++|++.|++++|.+++++|
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~- 488 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA- 488 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence 9999999999999999999999999999999999999999976677899999999999999999999999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 451 GKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 451 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
++.|+..+|++|+.+|..+|+++.|.++++++.+.++
T Consensus 489 --~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 489 --PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 6788888888888888777777777776666655443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=454.81 Aligned_cols=392 Identities=15% Similarity=0.195 Sum_probs=284.8
Q ss_pred chhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCC--------
Q 011081 85 PHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGS-------- 156 (494)
Q Consensus 85 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 156 (494)
++.|+++|..|... |+.||..+|+.+|++|++.++++.+.+++..+.+.| ..++..++++++.+|.++|.
T Consensus 168 ~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 168 FDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred HHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 33444444444321 334444444444444444444444444444444433 44566778888888888773
Q ss_pred ------ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccc
Q 011081 157 ------APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT 230 (494)
Q Consensus 157 ------~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (494)
+..+||++|.+|++.|+ .++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.+....
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~---~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGE---CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 66889999999999999 999999999999999999999999999999988888888888888876543211
Q ss_pred -------------cccccccccccc--cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhc
Q 011081 231 -------------AGIGKDVKRVVR--VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEE 295 (494)
Q Consensus 231 -------------~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 295 (494)
.+..+++.+.+. ..||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 122223444332 36789999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 296 RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVY 375 (494)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (494)
|+++.|.++++.|.+.|+.|+..+||+||.+|+++|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|+.+|
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999988888888886 345566666666666666666666666
Q ss_pred HHHHHCCCCCChhhHHHH-----------------------------------HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 011081 376 NDMCRKGFEPEGSTIEVL-----------------------------------IGELCDKRRVFEALDILKARVVKFGLF 420 (494)
Q Consensus 376 ~~m~~~~~~p~~~~~~~l-----------------------------------i~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (494)
++|.. ++.||..||+.+ +.+|++.|++++|.++|++ + .
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~-~-----~ 551 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-H-----E 551 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh-c-----C
Confidence 66653 345555544444 3444455555555555542 1 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-Hcccccc
Q 011081 421 PTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF-ENQVRQE 492 (494)
Q Consensus 421 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~pd 492 (494)
||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. +.|+.|+
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 66777777777777777777777777777777777777777777777777777777777777777 5566665
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=447.27 Aligned_cols=362 Identities=16% Similarity=0.235 Sum_probs=288.0
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcC---
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECG--- 155 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 155 (494)
++..+.++.|+.+|..+.. .+++|+..+|..++.+|.+.+.++.|..++..+.+.+ ..++..++++++.+|.++|
T Consensus 61 l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~~~ 138 (857)
T PLN03077 61 LCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGELV 138 (857)
T ss_pred HHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCChH
Confidence 4455678889999988864 4568888889999999988888999999998888776 4577788889998888877
Q ss_pred -----------CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhc
Q 011081 156 -----------SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFG 224 (494)
Q Consensus 156 -----------~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (494)
++..+|+.+|.+|++.|+ +++|+++|++|.+.|+.||..||+.++++|++.++++.+.+++..+..
T Consensus 139 ~A~~~f~~m~~~d~~~~n~li~~~~~~g~---~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGY---FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred HHHHHHhcCCCCCeeEHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 366788999999999998 999999999998888888888887777776666666666666666654
Q ss_pred CCcccc-------------cccccccccccc--cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHH
Q 011081 225 LDSDAT-------------AGIGKDVKRVVR--VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLM 289 (494)
Q Consensus 225 ~~~~~~-------------~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 289 (494)
.+.... .+....+.+.+. ..||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 332211 111122333322 35788999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011081 290 AVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVD 369 (494)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (494)
.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+++
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHH
Confidence 9999999999999999999888888888888888888888888888888888885 567788888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
+|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++. .+.+.|+.|+..+|+.||++|++.|++++|.++|++|
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~-~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE-LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH-HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 888888888888888888888888888888888888888877 5666677777777777777777777777777777666
Q ss_pred H
Q 011081 450 V 450 (494)
Q Consensus 450 ~ 450 (494)
.
T Consensus 451 ~ 451 (857)
T PLN03077 451 P 451 (857)
T ss_pred C
Confidence 4
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=428.16 Aligned_cols=375 Identities=19% Similarity=0.249 Sum_probs=326.8
Q ss_pred hccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcC-----
Q 011081 81 LKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECG----- 155 (494)
Q Consensus 81 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 155 (494)
..++.+.|.++|+.|. .||..+||++|.+|++.|++++|.++|++|.+.| ..++..+|..++.++.+.+
T Consensus 170 k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 170 KCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred cCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHH
Confidence 3456677777777764 3677778888888888888888888888777665 4566667777766554332
Q ss_pred -------------CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHH
Q 011081 156 -------------SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREV 222 (494)
Q Consensus 156 -------------~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (494)
++..+|+.||.+|++.|+ +++|.++|+.|. .+|+.+||++|.+|++.|+.++|.++|++|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~---~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGD---IEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCC---HHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456677888888888888 888888888774 357788888888888888888888888888
Q ss_pred hcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHH
Q 011081 223 FGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAE 302 (494)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 302 (494)
.+ .|+.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|++||++|++.|++++|.
T Consensus 317 ~~----------------~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 317 RD----------------SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HH----------------cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 54 45799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 011081 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR-K 381 (494)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~ 381 (494)
++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .
T Consensus 381 ~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 381 NVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 9999997 4699999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 011081 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEI 460 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~ 460 (494)
|+.|+..+|+.++.+|++.|++++|.+++++ .++.|+..+|++|+.+|...|+++.|.++++++. ++.|+ ..+
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~----~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~ 530 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRR----APFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNN 530 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcc
Confidence 9999999999999999999999999998763 4778999999999999999999999999999998 45664 779
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccccccCC
Q 011081 461 YSAFIDGYMKEGNVEMATMLRKEMFENQVRQEDG 494 (494)
Q Consensus 461 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~pd~g 494 (494)
|..|++.|++.|++++|.+++++|.+.|++...|
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 9999999999999999999999999999876544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-22 Score=216.71 Aligned_cols=299 Identities=12% Similarity=0.071 Sum_probs=221.4
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
+.+|..+..++...|+ +++|++.++.+.+... .+...+..+..++.+.|++++|...|+++....+
T Consensus 601 ~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------- 666 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGD---LNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP---------- 666 (899)
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------
Confidence 3445555555555555 5555555555554332 1344455555555555555555555555544332
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
.+..+|..++..+.+.|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+.+.+ |+.
T Consensus 667 -------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 736 (899)
T TIGR02917 667 -------DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSS 736 (899)
T ss_pred -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCc
Confidence 257788888888888888888888888887765 4566777788888888888888888888887763 455
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGEL 397 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 397 (494)
.++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+..+++.+...+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 677778888888888888888888888765 5677888888888888899999999998888775 45677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMA 477 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 477 (494)
...|+ .+|+..+++.+...+ -+..++..+...+...|++++|.++++++++.+. .+..++..+..++.+.|+.++|
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLAP--NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHH
Confidence 88888 778888887665433 3445667788888889999999999999988653 3788888899999999999999
Q ss_pred HHHHHHHHH
Q 011081 478 TMLRKEMFE 486 (494)
Q Consensus 478 ~~~~~~m~~ 486 (494)
.+++++|++
T Consensus 891 ~~~~~~~~~ 899 (899)
T TIGR02917 891 RKELDKLLN 899 (899)
T ss_pred HHHHHHHhC
Confidence 999988863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-21 Score=211.51 Aligned_cols=374 Identities=13% Similarity=0.049 Sum_probs=262.3
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhh--------
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRE-------- 153 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 153 (494)
.++++.|++++..+.... +.+..+|..+..++...|++++|...++.+++..... ...+..+...+..
T Consensus 444 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF--FPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHCCCHHHHH
Confidence 455666666666554322 4456677777777777777777777777766532211 1111111111111
Q ss_pred ---------cCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhc
Q 011081 154 ---------CGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFG 224 (494)
Q Consensus 154 ---------~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (494)
...+..++..+...+.+.|+ .++|...++++.+.+. .+...+..+...|.+.|++++|.++++.+..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGN---EEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12234455556666666666 6666666666665442 2445566666666666777777776666654
Q ss_pred CCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHH
Q 011081 225 LDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKL 304 (494)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 304 (494)
.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+
T Consensus 596 ~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 596 AA-----------------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred cC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 33 2367778888888888888888888888887654 34566777888888888888888888
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011081 305 WEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFE 384 (494)
Q Consensus 305 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (494)
|+.+.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.|+.+...+
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-- 733 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-- 733 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 88887764 4467788888888888888888888888887775 5667777888888888888888888888887764
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 385 PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAF 464 (494)
Q Consensus 385 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (494)
|+..++..+...+.+.|+.++|.+.+++.+... +.+...+..+...|...|+.++|.++|+++.+.. +.+..++..+
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 444667778888888888888888888666543 3466778888888888888888888888888763 4567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 465 IDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 465 i~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
...+.+.|+ ++|+.+++++.+..+
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 888888888 778888888877544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-21 Score=189.29 Aligned_cols=303 Identities=15% Similarity=0.170 Sum_probs=252.9
Q ss_pred HHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccC
Q 011081 167 CCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN 246 (494)
Q Consensus 167 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (494)
.+...|+ +++|++.|.++.+.+.. +..++..+...+...|++++|..+++.+...... .....
T Consensus 44 ~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------------~~~~~ 106 (389)
T PRK11788 44 NFLLNEQ---PDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL-------------TREQR 106 (389)
T ss_pred HHHhcCC---hHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC-------------CHHHH
Confidence 3556677 99999999999987533 6678999999999999999999999999764321 00112
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD----VVAYNT 322 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~ 322 (494)
...+..+...|.+.|++++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...|..
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4678899999999999999999999998763 45678899999999999999999999999988653322 224667
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR 402 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 402 (494)
+...+.+.|++++|..+|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 8888999999999999999998764 445678888999999999999999999999886533335678889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHH
Q 011081 403 VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK---EGNVEMATM 479 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~ 479 (494)
+++|...+++.... .|+...+..++..+.+.|++++|.++++++.+. .|+..++..++..+.. .|+.+++..
T Consensus 265 ~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~ 339 (389)
T PRK11788 265 EAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLL 339 (389)
T ss_pred HHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHH
Confidence 99999999965554 467777788999999999999999999999865 7999999999988775 568999999
Q ss_pred HHHHHHHccccccC
Q 011081 480 LRKEMFENQVRQED 493 (494)
Q Consensus 480 ~~~~m~~~~~~pd~ 493 (494)
++++|.+.+++|+.
T Consensus 340 ~~~~~~~~~~~~~p 353 (389)
T PRK11788 340 LLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999998887764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=183.14 Aligned_cols=302 Identities=15% Similarity=0.119 Sum_probs=249.9
Q ss_pred HHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCC
Q 011081 113 HILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGL 192 (494)
Q Consensus 113 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~ 192 (494)
..+...|++++|...+..+++.. ..+..++..+...+...|+ +++|.++++.+.+.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-------------------p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~ 100 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-------------------PETVELHLALGNLFRRRGE---VDRAIRIHQNLLSRPD 100 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-------------------cccHHHHHHHHHHHHHcCc---HHHHHHHHHHHhcCCC
Confidence 34567789999999999998732 2234577788888999999 9999999999988543
Q ss_pred CcC---hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHH
Q 011081 193 SVK---VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDV 269 (494)
Q Consensus 193 ~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 269 (494)
.++ ...+..+...|.+.|++++|.++|+++.+..+ .+..+++.++..+.+.|++++|.+.
T Consensus 101 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~-----------------~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 101 LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD-----------------FAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc-----------------chHHHHHHHHHHHHHhchHHHHHHH
Confidence 222 35678889999999999999999999976532 3788999999999999999999999
Q ss_pred HHHHHHcCCCcC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 270 WVEMARLGCEPD----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 270 ~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
++.+.+.+..+. ...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999988653322 1245677788899999999999999998764 34567888899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH
Q 011081 346 SGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS 425 (494)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 425 (494)
.+......+++.++.+|...|++++|...++.+.+.. |+...+..+...+.+.|++++|...+++.+.. .|+..+
T Consensus 243 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~ 317 (389)
T PRK11788 243 QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRG 317 (389)
T ss_pred HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHH
Confidence 6423335678899999999999999999999998864 66667788999999999999999999976665 589999
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 011081 426 YMFLIKGLCE---EGKMEEALKVQAEMVGKGFEPSLE 459 (494)
Q Consensus 426 ~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 459 (494)
++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9988888775 568999999999999887777654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-18 Score=172.52 Aligned_cols=334 Identities=9% Similarity=0.038 Sum_probs=268.5
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHH
Q 011081 109 ATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLM 188 (494)
Q Consensus 109 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~ 188 (494)
..++..+.+.|+++.|..+++..+... ...+.+...++.++...|+ .++|++.++++.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-------------------p~~~~~l~~l~~~~l~~g~---~~~A~~~l~~~l 103 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-------------------KNGRDLLRRWVISPLASSQ---PDAVLQVVNKLL 103 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-------------------CCchhHHHHHhhhHhhcCC---HHHHHHHHHHHH
Confidence 345677888899999999998887632 2334555566667778899 999999999999
Q ss_pred hCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHH
Q 011081 189 SRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVED 268 (494)
Q Consensus 189 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 268 (494)
+.... +...+..+...+...|++++|.+.|+++....+. +...+..+...+...|++++|..
T Consensus 104 ~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-----------------~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 104 AVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-----------------NSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred HhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHCCChHHHHH
Confidence 86543 6677888899999999999999999999876543 67889999999999999999999
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011081 269 VWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV 348 (494)
Q Consensus 269 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 348 (494)
.++.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..+..++.+.|++++|+..|+++.+..
T Consensus 166 ~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~- 242 (656)
T PRK15174 166 LARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG- 242 (656)
T ss_pred HHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 999887664 2233344333 3578899999999999998876433455556666788999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 011081 349 ESSSVTFEHLVNGYCRAGDVDS----AILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEK 424 (494)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 424 (494)
+.+...+..+...|...|++++ |...|+...+.. +.+...+..+...+...|++++|+..+++.+.... .+..
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P--~~~~ 319 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP--DLPY 319 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH
Confidence 5567888889999999999986 899999998864 33567888999999999999999999997776532 3455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 425 SYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEI-YSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.+..+..++.+.|++++|.+.++++.+. .|+... +..+..++...|+.++|...|++..+..++
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 6777889999999999999999999865 555433 444567889999999999999999887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-16 Score=160.80 Aligned_cols=365 Identities=10% Similarity=-0.024 Sum_probs=265.0
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP 158 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (494)
+...++++.|+..|..+... .|+...|..+..++.+.|++++|+..++.+++.. ....
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------------------p~~~ 194 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------------------PDYS 194 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------------------CCCH
Confidence 34457888899999887643 4677788888888999999999999998887632 1223
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCC----------------------------Cc-ChHhHHHH-------
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGL----------------------------SV-KVSTCNAL------- 202 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~----------------------------~~-~~~~~~~l------- 202 (494)
.++..+..+|...|+ +++|+..|......+. .| +...+..+
T Consensus 195 ~a~~~~a~a~~~lg~---~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (615)
T TIGR00990 195 KALNRRANAYDGLGK---YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSF 271 (615)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 445555556666666 6666554433221110 00 00000000
Q ss_pred -----------------------HHHH------HcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHH
Q 011081 203 -----------------------IWEV------SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNAL 253 (494)
Q Consensus 203 -----------------------l~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 253 (494)
+... ...+++++|.+.|+..++.+.. .......|+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~--------------~~~~a~a~~~l 337 (615)
T TIGR00990 272 RPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL--------------GEKEAIALNLR 337 (615)
T ss_pred cCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC--------------ChhhHHHHHHH
Confidence 0000 1124567777777777654211 12256778888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
...+...|++++|+..|++..+.. +-+...|..+...+...|++++|...|+...+.. +.+..+|..+...|...|++
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998763 2235688889999999999999999999998774 45688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKAR 413 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 413 (494)
++|...|++..+.. +.+...+..+...+.+.|++++|+..|++.++.. +.+...++.+...+...|++++|++.|+..
T Consensus 416 ~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 416 AQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998875 5567788889999999999999999999998763 335678888999999999999999999976
Q ss_pred HHhCCCC-C---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 414 VVKFGLF-P---TE-KSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 414 ~~~~~~~-p---~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
+....-. + +. ..++.....+...|++++|.+++++.++. .|+ ...+..+...+...|++++|.++|++..+.
T Consensus 494 l~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 494 IELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6542110 1 11 11222223344469999999999998865 444 567888999999999999999999998765
Q ss_pred c
Q 011081 488 Q 488 (494)
Q Consensus 488 ~ 488 (494)
.
T Consensus 572 ~ 572 (615)
T TIGR00990 572 A 572 (615)
T ss_pred h
Confidence 4
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-16 Score=162.89 Aligned_cols=325 Identities=11% Similarity=0.021 Sum_probs=258.7
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP 158 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (494)
....|++..|+.++........ -+......++.++...|+++.|...++.++... ..++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------------------P~~~ 110 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------------------VCQP 110 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------------------CCCh
Confidence 3456789999999888765542 334455555667777999999999999988732 3345
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
..+..+...+...|+ .++|++.+++..+.... +...+..+..++...|+.++|...++.+....+.
T Consensus 111 ~a~~~la~~l~~~g~---~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~---------- 176 (656)
T PRK15174 111 EDVLLVASVLLKSKQ---YATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP---------- 176 (656)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC----------
Confidence 667777888899999 99999999999886432 5778888999999999999999999988665442
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
+...+..+ ..+.+.|++++|...++.+.+..-.++...+..+...+.+.|++++|...++...+.. +.+..
T Consensus 177 -------~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 177 -------RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred -------CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 33344333 3478899999999999998776433445555666788999999999999999998875 45678
Q ss_pred HHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 319 AYNTIIGGFCEIGEMAR----AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
.+..+...|...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 88899999999999986 899999998874 5567889999999999999999999999999864 23456677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 395 GELCDKRRVFEALDILKARVVKFGLFPTEK-SYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
..+.+.|++++|++.++..+... |+.. .+..+..++...|+.++|.+.|++..+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999766553 4443 3444567789999999999999999865
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-16 Score=167.01 Aligned_cols=392 Identities=10% Similarity=0.018 Sum_probs=236.6
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP 158 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (494)
....++++.|+..|..+.... +.+...+..+..++.+.|++++|+..++.+++..........+..++.... .
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~-----~ 351 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR-----Y 351 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh-----H
Confidence 344578889999999886543 347788999999999999999999999999875432222222333322100 0
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccc---ccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAG---IGK 235 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~ 235 (494)
.........+.+.|+ +++|++.|+++.+.... +...+..+..++...|++++|.+.|++++...+..... +..
T Consensus 352 ~~~~~~g~~~~~~g~---~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 352 WLLIQQGDAALKANN---LAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 111223445677888 89999999888886432 56677778888888899999999998888766541110 000
Q ss_pred --------cccccc-ccc-------------cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 011081 236 --------DVKRVV-RVR-------------PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFC 293 (494)
Q Consensus 236 --------~~~~~~-~~~-------------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 293 (494)
++.... ... -....+..+...+...|++++|++.|++..+.. +-+...+..+...|.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 000000 000 011234455667778899999999999888764 334566777888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC--------------------------
Q 011081 294 EERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG-------------------------- 347 (494)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------------------- 347 (494)
+.|++++|...++++.+.. +.+...+..+...+.+.|+.++|+..++.+....
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999887653 2244444444444455566666655555432211
Q ss_pred -------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 348 -------------VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 348 -------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
.+.+...+..+...+.+.|++++|+..|+..++.. +.+...+..+...+...|+.++|++.++..+
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 12333444555556666666666666666666543 2245555666666666666666666666333
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 415 VKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGF--EP---SLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 415 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
... +.+...+..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|...+++.+.
T Consensus 665 ~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 ATA--NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 11233444555556666666666666666654311 11 123444455556666666666666666543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-15 Score=163.69 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=175.2
Q ss_pred hccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCC------------------hHH
Q 011081 81 LKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDP------------------KLK 142 (494)
Q Consensus 81 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------~~~ 142 (494)
..++++.|++.++.+.... +-+...+..+...+...|+.++|+..++.+...+.... ...
T Consensus 159 ~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred CCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHH
Confidence 3467788888888886554 34566788888889899999999999999876432110 111
Q ss_pred HHHHHHHHhhhcC----------------CChh-hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHH
Q 011081 143 LFEVLVKTYRECG----------------SAPF-VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWE 205 (494)
Q Consensus 143 ~~~~l~~~~~~~~----------------~~~~-~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 205 (494)
.+...+..+.... .++. ........+...|+ +++|+..|++..+.... +...+..+..+
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~---~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~ 312 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ---GGKAIPELQQAVRANPK-DSEALGALGQA 312 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 1111111111100 0110 01122455677888 99999999999986533 77889999999
Q ss_pred HHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHH------------HHHHHHHhcCCHhHHHHHHHHH
Q 011081 206 VSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFN------------ALMVGFYREGAFEKVEDVWVEM 273 (494)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~m 273 (494)
+.+.|++++|.+.|++..+..+. .+....|. .....+.+.|++++|+..|++.
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~---------------~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPH---------------SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------------ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999876654 11111111 1233455667777777777776
Q ss_pred HHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH--------------------------------
Q 011081 274 ARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYN-------------------------------- 321 (494)
Q Consensus 274 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------------------------------- 321 (494)
.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+.
T Consensus 378 l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 378 RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 6653 2344555666666777777777777777666542 11222222
Q ss_pred ----------HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 322 ----------TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 322 ----------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
.+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+.
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 22334445677777777777777653 335556666777777777777777777777653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-16 Score=148.77 Aligned_cols=264 Identities=15% Similarity=0.181 Sum_probs=166.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
+|..|...+-..|++-.|.+.|+++...+|. -...|-.|...|.+.+.+++|...|.+.....
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~-----------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-----------------FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCCCc-----------------chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 3444444444455555555555555443332 24556667777777777777777766655442
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD-VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
+-....|..+...|...|.+|.|+..|++.++. .|+ ...|+.|..++-..|+..+|++.|.+..... +--..+.+
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 223455666666677777777777777777665 333 4567777777777777777777777766553 33445666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCRKGFEPE-GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTE-KSYMFLIKGLC 434 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~ 434 (494)
.|...|...|.+++|..+|....+- .|. ...++.|...|-++|++++|+..+++.+. +.|+. ..|+.+...|-
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHH
Confidence 6777777777777777777766653 232 34566677777777777777777765443 34443 35667777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
..|+.+.|.+.+.+.+. +.|. ...++.|...|...|++.+|+.-+++.++..+
T Consensus 434 e~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 77777777777777663 4554 45666677777777777777777777766444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-17 Score=150.44 Aligned_cols=336 Identities=15% Similarity=0.149 Sum_probs=277.0
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHH
Q 011081 103 HSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVD 182 (494)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~ 182 (494)
....+|..+.+++-..|+++.|+..++.+++.. ......|..+..++...|+ .+.|.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-------------------p~fida~inla~al~~~~~---~~~a~~ 171 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK-------------------PKFIDAYINLAAALVTQGD---LELAVQ 171 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-------------------chhhHHHhhHHHHHHhcCC---CcccHH
Confidence 345788888888888899999999998887732 2234667778888888888 888999
Q ss_pred HHHHHHhCCCCcChHh-HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC
Q 011081 183 IVRMLMSRGLSVKVST-CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG 261 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 261 (494)
.|...++. .|+... ...+...+...|++++|...|.++++..+. =.+.|..|...+-..|
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-----------------fAiawsnLg~~f~~~G 232 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-----------------FAIAWSNLGCVFNAQG 232 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-----------------eeeeehhcchHHhhcc
Confidence 88888774 454443 334555566678889999988888765443 4678999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPD-CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFF 340 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (494)
+...|+..|++.... .|+ ...|-.|...|...+.++.|...|....... +...+++..|...|...|.+|.|+..|
T Consensus 233 ei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHH
Confidence 999999999998875 444 5689999999999999999999999887763 335678888889999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 011081 341 REMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF 420 (494)
Q Consensus 341 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (494)
++..+.. +.=...|+.|..++-..|++.+|.+.|+..+... .--....+.|...+...|.+++|..+|...+.- .
T Consensus 310 kral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---~ 384 (966)
T KOG4626|consen 310 KRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV---F 384 (966)
T ss_pred HHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---C
Confidence 9998864 3346889999999999999999999999998864 334667889999999999999999999866643 3
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 421 PT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 421 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
|. ....+.|...|-+.|++++|+.-+++.+ .+.|+ ...|+.+...|-..|+.+.|...+.+.+..++
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 44 3467889999999999999999999998 57887 67899999999999999999999999888665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-14 Score=151.13 Aligned_cols=222 Identities=9% Similarity=0.036 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHHc-CCCcCHh-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhHHHHHHHHHHccCCHHHH
Q 011081 264 EKVEDVWVEMARL-GCEPDCY-SY----SVLMAVFCEERRMREAEKLWEEMRDKNVE-HDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 264 ~~a~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A 336 (494)
++|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.+ |+. .-..+...|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 5677777777754 2233321 11 11133456779999999999999887532 322 222357789999999999
Q ss_pred HHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---hhhHHHHHHHHHh
Q 011081 337 EEFFREMGLSGVES---SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-----------EPE---GSTIEVLIGELCD 399 (494)
Q Consensus 337 ~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~ 399 (494)
+..|+++.+..... .......+..++...|++++|.++++.+.+... .|+ ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999987653111 134566677788999999999999999987531 123 1244567778889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011081 400 KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 478 (494)
.|+.++|++.+++..... +-+...+..+...+...|+.++|++.+++.++. .|+ ...+..+...+...|++++|.
T Consensus 372 ~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 372 SNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999776654 345667888899999999999999999999865 565 667777778899999999999
Q ss_pred HHHHHHHHcccc
Q 011081 479 MLRKEMFENQVR 490 (494)
Q Consensus 479 ~~~~~m~~~~~~ 490 (494)
.+++++++..+.
T Consensus 448 ~~~~~ll~~~Pd 459 (765)
T PRK10049 448 VLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHhCCC
Confidence 999999986654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-15 Score=150.73 Aligned_cols=352 Identities=11% Similarity=0.037 Sum_probs=259.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHH
Q 011081 108 YATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRML 187 (494)
Q Consensus 108 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m 187 (494)
+......+.+.|+++.|+..|+.++.. .|++..|..+..+|.+.|+ +++|++.+...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--------------------~p~~~~~~n~a~~~~~l~~---~~~Ai~~~~~a 186 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--------------------KPDPVYYSNRAACHNALGD---WEKVVEDTTAA 186 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------CCchHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence 345567778889999999999988762 2345567778888999999 99999999999
Q ss_pred HhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccc--------c----ccccccccccc----CHH---
Q 011081 188 MSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGI--------G----KDVKRVVRVRP----NVH--- 248 (494)
Q Consensus 188 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~p----~~~--- 248 (494)
++.... +...|..+..+|...|++++|..-|......++...... . ..+.......| ...
T Consensus 187 l~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~ 265 (615)
T TIGR00990 187 LELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVG 265 (615)
T ss_pred HHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 986533 677888999999999999999887765543322100000 0 00000000000 000
Q ss_pred ---------------------------HHHHHHHH---HHhcCCHhHHHHHHHHHHHcC-CCc-CHhHHHHHHHHHHhcC
Q 011081 249 ---------------------------TFNALMVG---FYREGAFEKVEDVWVEMARLG-CEP-DCYSYSVLMAVFCEER 296 (494)
Q Consensus 249 ---------------------------~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g 296 (494)
.+..+... ....+++++|.+.|++..+.+ ..| +...|..+...+...|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 266 NYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred HHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 00000000 012367899999999998765 223 4567888888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 297 RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYN 376 (494)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (494)
++++|...++...+.. +.+...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|+
T Consensus 346 ~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 346 KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998863 3346688899999999999999999999998874 5567899999999999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011081 377 DMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP 456 (494)
Q Consensus 377 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (494)
+.++.. +.+...+..+...+.+.|++++|+..|++.+... +-+...|+.+..++...|++++|.+.|++..+. .|
T Consensus 424 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p 498 (615)
T TIGR00990 424 KSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EK 498 (615)
T ss_pred HHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CC
Confidence 998875 3356677788888999999999999999777653 234678888999999999999999999998865 33
Q ss_pred C--H------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 457 S--L------EIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 457 ~--~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+ . ..++..+..+...|++++|.+++++.++.++.
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2 1 11222222344469999999999998887643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-15 Score=132.33 Aligned_cols=349 Identities=14% Similarity=0.157 Sum_probs=258.5
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCV 181 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~ 181 (494)
+-+..+|..+|.++|+--+.+.|.+++.+.-.. +......+||.+|.+-. +....
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~------------------k~kv~~~aFN~lI~~~S-------~~~~K 258 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAA------------------KGKVYREAFNGLIGASS-------YSVGK 258 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh------------------hheeeHHhhhhhhhHHH-------hhccH
Confidence 446689999999999999999999999876552 23445678888877654 33346
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG 261 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 261 (494)
++..+|....+.||..|+|+++.+.++.|+++.|.+.+-+++... +..|+.|...+|..+|..+++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~Em------------KeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEM------------KEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHH------------HHhCCCcchhhHHHHHHHhcccC
Confidence 789999999999999999999999999999887766555443321 34789999999999999999998
Q ss_pred CHhH-HHHHHHHHHHc----CCC---c-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HhHHHHHHH
Q 011081 262 AFEK-VEDVWVEMARL----GCE---P-DCYSYSVLMAVFCEERRMREAEKLWEEMRDKN----VEHD---VVAYNTIIG 325 (494)
Q Consensus 262 ~~~~-a~~~~~~m~~~----g~~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~ 325 (494)
+..+ +..++.+.... .++ | |...|...+..|.+..+.+-|.++...+.... +.|+ ..-|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 8755 44555554432 222 2 44567888999999999999999887665421 2222 234677888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-C--
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR-R-- 402 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~-- 402 (494)
..|+....+.-.+.|+.|.-+-.-|+..+...++++..-.|.++-.-++|.+++..|..........++..+++.. .
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~ 486 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPL 486 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCC
Confidence 8899999999999999999887788999999999999999999999999999998885555555555555555443 1
Q ss_pred -----------------HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHH
Q 011081 403 -----------------VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKG----FEPSLEIY 461 (494)
Q Consensus 403 -----------------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~ 461 (494)
+.++.+.-...+.+.. ......+.+.-.+.+.|+.++|.+++..+.+.+ ..|.....
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm 564 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAM 564 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhH
Confidence 1111111111233333 344557788888999999999999999996553 23444445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 462 SAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 462 ~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
..+++......+...|..+++-|...+.
T Consensus 565 ~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 565 AELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 5677778888899999999998876654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.7e-13 Score=135.31 Aligned_cols=198 Identities=11% Similarity=0.036 Sum_probs=138.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG-----VESSSVTFEHLVNGYC 363 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~ 363 (494)
+-++.+.|++.++++.|+.+...|.+....+-.++.++|...+++++|+.+|+++.... ..++......|..+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34566677888888888888877766566677788888888888888888888876542 1223344567778888
Q ss_pred hcCCHHHHHHHHHHHHHCCC-------------CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 364 RAGDVDSAILVYNDMCRKGF-------------EPEGS-TIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFL 429 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~~-------------~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 429 (494)
..+++++|..+++.+.+.-. .||-. .+..++..+...|+..+|++.+++.+... +-|......+
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~ 456 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIAL 456 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 88888888888888876311 11211 23345666777888888888888665543 3466677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 430 IKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
...+...|...+|++.++..... .| +..+......++...|++++|..+.+.+.+..+.
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 88888888888888888666643 44 4566667777778888888888888777765543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-13 Score=138.21 Aligned_cols=377 Identities=10% Similarity=0.032 Sum_probs=277.6
Q ss_pred CCCCChhHHHHH--HHhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHH
Q 011081 66 RSGLTPTQFSQI--ALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKL 143 (494)
Q Consensus 66 ~~~~~~~~~~~~--~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (494)
...++|..+... +....++.+.|++.+....... +.+...+..+..++.+.|++++|..+++.+++.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------- 78 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------- 78 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 345677766543 3566788999999888775322 345557899999999999999999999998762
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHh
Q 011081 144 FEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVF 223 (494)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (494)
.+.++.....+...+...|+ .++|+..+++..+.... +.. +..+..++...|+.++|...++++.
T Consensus 79 ----------~P~~~~a~~~la~~l~~~g~---~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 79 ----------EPQNDDYQRGLILTLADAGQ---YDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred ----------CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23456777788899999999 99999999999886433 555 8888999999999999999999998
Q ss_pred cCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH------hHHHHHHHHHH----
Q 011081 224 GLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC------YSYSVLMAVFC---- 293 (494)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~---- 293 (494)
+..|. +...+..+...+...|..++|+..++.... .|+. .....++....
T Consensus 144 ~~~P~-----------------~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 144 PRAPQ-----------------TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HhCCC-----------------CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc
Confidence 87654 677777788888899999999999986654 2321 11222222222
Q ss_pred -hcCCH---HHHHHHHHHHHhC-CCCCCHh-HH----HHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 011081 294 -EERRM---REAEKLWEEMRDK-NVEHDVV-AY----NTIIGGFCEIGEMARAEEFFREMGLSGVE-SSSVTFEHLVNGY 362 (494)
Q Consensus 294 -~~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~ 362 (494)
..+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. .-..+...|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 22334 7788888888754 1223221 11 11134456779999999999999987532 332 222357789
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----------CCCC---HHHH
Q 011081 363 CRAGDVDSAILVYNDMCRKGFEP---EGSTIEVLIGELCDKRRVFEALDILKARVVKFG----------LFPT---EKSY 426 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~ 426 (494)
...|++++|+..|+.+.+..... .......+..++...|++++|.+.++....... -.|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999988653211 123456667788999999999999986554421 1233 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 427 MFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
..+...+...|+.++|+++++++... .+.+...+..+...+...|+.++|++.+++.++..|.
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 66778889999999999999999875 3446888999999999999999999999999987643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-13 Score=123.44 Aligned_cols=321 Identities=15% Similarity=0.193 Sum_probs=240.5
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHc--CCChhH-HHHHHHHHhcCCccc--ccccc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSR--GKGVIS-GYEIYREVFGLDSDA--TAGIG 234 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~~~~~-a~~~~~~~~~~~~~~--~~~~~ 234 (494)
+-+.|++.- ..|. +..+.-+|+.|...|++.+...-..|++..+- ..+..- -++.|-.|...+.+. ...-|
T Consensus 118 ~E~nL~kmI-S~~E---vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 118 TENNLLKMI-SSRE---VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred chhHHHHHH-hhcc---cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 344444433 3455 88999999999999998888887777765443 333322 233344443332221 11112
Q ss_pred ccccccccc-ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011081 235 KDVKRVVRV-RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV 313 (494)
Q Consensus 235 ~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 313 (494)
..+.-.+.. +.+..++..||.+.|+--..+.|.+++.+-.+...+.+..+||.+|.+-.-..+ .++..+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 222222333 347899999999999999999999999999988889999999999987554333 788999999999
Q ss_pred CCCHhHHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC
Q 011081 314 EHDVVAYNTIIGGFCEIGEMAR----AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS-AILVYNDMCR----KGFE 384 (494)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~ 384 (494)
.||..|+|+++++..+.|+++. |.+++.+|++-|+.|...+|..+|.-+++.++..+ +..++.++.. +.++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998875 56788899999999999999999999999988755 4445544433 2333
Q ss_pred C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 385 P----EGSTIEVLIGELCDKRRVFEALDILKARVVKF----GLFPTE---KSYMFLIKGLCEEGKMEEALKVQAEMVGKG 453 (494)
Q Consensus 385 p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (494)
| |...|...+..|.+..+.+.|.++.. .++.. -+.|+. .-|..+..+.|+....+.....|+.|+-.-
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~-ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHG-LLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHH-HHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 3 45567778888889999999988864 34321 122332 246677788889999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 454 FEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 454 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
+-|+..+...++++..-.|.++-..+++..++..|-
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 889999999999999999999999999999988773
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-11 Score=126.02 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=143.8
Q ss_pred HHHHHHHhhccCchhhhHHHHhhhccCCCCCCH--hHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 011081 73 QFSQIALGLKNNPHLALRFFSFTQHKSLCKHSL--SSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKT 150 (494)
Q Consensus 73 ~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (494)
....++....|+...|+..|..+.... |+. ..+ .++..+...|+.++|+..++..+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p---------------- 97 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS---------------- 97 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC----------------
Confidence 444567778889999999999886544 332 234 7888888899999999999887631
Q ss_pred hhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccc
Q 011081 151 YRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT 230 (494)
Q Consensus 151 ~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (494)
..........+...+...|+ +++|+++|+++.+.... ++..+..++..+...++.++|++.++++...
T Consensus 98 ---~n~~~~~llalA~ly~~~gd---yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----- 165 (822)
T PRK14574 98 ---MNISSRGLASAARAYRNEKR---WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER----- 165 (822)
T ss_pred ---CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----
Confidence 11223334444668888899 99999999999987655 5677778888999999999999999999664
Q ss_pred cccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 231 AGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEM 308 (494)
Q Consensus 231 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 308 (494)
.|+...+-.++..+...++..+|++.++++.+.. +-+...+..++.++.+.|-...|.++..+-
T Consensus 166 -------------dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 166 -------------DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred -------------CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 4455555555455545667767999999999884 446777888999999999999998776653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-12 Score=110.50 Aligned_cols=293 Identities=13% Similarity=0.142 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
.++|+++|-+|.+.... +..+.-+|.+.|...|.++.|.++...+.+.... ....-......|..-
T Consensus 51 ~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl-------------T~~qr~lAl~qL~~D 116 (389)
T COG2956 51 PDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL-------------TFEQRLLALQQLGRD 116 (389)
T ss_pred cchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC-------------chHHHHHHHHHHHHH
Confidence 78999999999985433 5677778999999999999999999998764331 011224456677888
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHccCC
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV----VAYNTIIGGFCEIGE 332 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~ 332 (494)
|...|-++.|+.+|..+.+.| .--......|+..|-...+|++|+++-.++.+.|-.+.. ..|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999865 334567788999999999999999999999887644432 246667777778889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 333 MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 333 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
.+.|..++.+..+.+ +..+..-..+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.+
T Consensus 196 ~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998875 4555555667788999999999999999999987666677888999999999999999999997
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHccc
Q 011081 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK---EGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 413 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~ 489 (494)
.+... +....-..+...-....-.+.|..++.+-+.. +|+...+..||+.... .|...+-..+++.|....+
T Consensus 275 ~~~~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 275 AMETN---TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHcc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 77653 44444455555555555667777777776654 8999999999997643 3567778888888887655
Q ss_pred c
Q 011081 490 R 490 (494)
Q Consensus 490 ~ 490 (494)
+
T Consensus 350 ~ 350 (389)
T COG2956 350 R 350 (389)
T ss_pred h
Confidence 4
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-12 Score=122.71 Aligned_cols=292 Identities=8% Similarity=-0.030 Sum_probs=214.7
Q ss_pred hcCChhcHHHHHHHHHHHHhCCCCcCh-HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHH
Q 011081 170 EVKNIEKIETCVDIVRMLMSRGLSVKV-STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVH 248 (494)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (494)
..|+ ++.|.+.+....+.. |+. ..+-....++...|+.+.|.+.+.++.+..+. +...
T Consensus 96 ~~g~---~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~----------------~~l~ 154 (409)
T TIGR00540 96 AEGD---YAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN----------------DNIL 154 (409)
T ss_pred hCCC---HHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc----------------CchH
Confidence 4577 999999998877754 443 33445567788889999999999998654321 1223
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH-HHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY-NTIIGGF 327 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~ 327 (494)
..-.....+.+.|+++.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+.. +...+ ..-..++
T Consensus 155 ~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~ 232 (409)
T TIGR00540 155 VEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE 232 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 33445788889999999999999999885 446678889999999999999999999999998744 33333 2122222
Q ss_pred ---HccCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHH
Q 011081 328 ---CEIGEMARAEEFFREMGLSGV---ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST---IEVLIGELC 398 (494)
Q Consensus 328 ---~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~ 398 (494)
...+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... .........
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l 310 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRL 310 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhc
Confidence 333333444445555554421 2478889999999999999999999999999874 34332 122222234
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 478 (494)
..++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.
T Consensus 311 ~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45788889999987777765444435667889999999999999999995444355899999999999999999999999
Q ss_pred HHHHHHHH
Q 011081 479 MLRKEMFE 486 (494)
Q Consensus 479 ~~~~~m~~ 486 (494)
+++++...
T Consensus 391 ~~~~~~l~ 398 (409)
T TIGR00540 391 AMRQDSLG 398 (409)
T ss_pred HHHHHHHH
Confidence 99998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-11 Score=127.87 Aligned_cols=352 Identities=9% Similarity=-0.038 Sum_probs=243.9
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHHHcC-CCCCChHHHHHHHHHHhhhcCCChhhHH---HHH------HHHHhcCC
Q 011081 104 SLSSYATIIHILSRARLIGPARDVIRVALRS-PENDPKLKLFEVLVKTYRECGSAPFVFD---LLI------KCCLEVKN 173 (494)
Q Consensus 104 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~li------~~~~~~~~ 173 (494)
+....-.+--...+.|+.++|..++++.... +....+..+...++..|...+. ..+.. .|+ .-|.-.|+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY-LATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc-ccchHHHHHhccccccchhHHHHhh
Confidence 3444444445566788999999999998873 3233345666677777765432 11111 110 01333454
Q ss_pred hhcHHHHH---HHHHHHHhCCCCc--ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHH
Q 011081 174 IEKIETCV---DIVRMLMSRGLSV--KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVH 248 (494)
Q Consensus 174 ~~~~~~a~---~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (494)
..++. +.+....... ++ +...|..+..++.. ++.++|...|.+.... .|+..
T Consensus 454 ---~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~------------------~Pd~~ 510 (987)
T PRK09782 454 ---LPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR------------------QPDAW 510 (987)
T ss_pred ---hhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh------------------CCchH
Confidence 43333 3333333321 23 56677778877776 7888899988887654 34544
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (494)
....+...+.+.|++++|...|+++... .|+...+..+..++.+.|++++|...++...+.+ +.+...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 4444455556889999999999987654 4555566777788889999999999999988764 233333444444455
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALD 408 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 408 (494)
+.|++++|...|++..+. .|+...|..+...+.+.|+.++|+..|++.++.. +.+...++.+...+...|+.++|++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999998876 4678888889999999999999999999988875 3356677777788899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 409 ILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 409 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.+++.+.... -+...+..+..++...|++++|...+++..+. .|+ ..+.-.......+..+++.|.+-+++....
T Consensus 665 ~l~~AL~l~P--~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 665 MLERAHKGLP--DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9987776542 34567788888999999999999999999864 555 355555566666777788888877776654
Q ss_pred cc
Q 011081 488 QV 489 (494)
Q Consensus 488 ~~ 489 (494)
++
T Consensus 741 ~~ 742 (987)
T PRK09782 741 SF 742 (987)
T ss_pred Cc
Confidence 43
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-11 Score=123.62 Aligned_cols=232 Identities=9% Similarity=0.063 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 34444444444444 4455555544444433 233332222233334455555555555554333 233333444444
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
.+.+.|++++|...|++..+.+ +.+...+..+...+...|++++|...+++.++.. |+...+..+...+.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 5555555555555555554432 2222222222223333455555555555554432 334445555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
|+..+++.+... +-+...++.+..++...|+.++|++.+++..+.. +-+...+..+..++...|++++|+..+++.+
T Consensus 628 A~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555443332 1223344444445555555555555555555431 1234445555555555555555555555555
Q ss_pred Hcc
Q 011081 486 ENQ 488 (494)
Q Consensus 486 ~~~ 488 (494)
+..
T Consensus 705 ~l~ 707 (987)
T PRK09782 705 DDI 707 (987)
T ss_pred hcC
Confidence 443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-15 Score=134.86 Aligned_cols=263 Identities=16% Similarity=0.151 Sum_probs=104.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEP 280 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 280 (494)
.+...+.+.|++++|++++++....... .-|...|..+...+...+++++|++.++++...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~---------------~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAP---------------PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc---------------cccccccccccccccccccccccccccccccccccc-
Confidence 4567777888999999888654332200 125566666667777788899999999988876522
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG-VESSSVTFEHLV 359 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li 359 (494)
+...+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+.
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 55567777766 6888899998888777655 3566777888888888999999999988876542 345777888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 360 NGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKM 439 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 439 (494)
..+.+.|+.++|++.+++.++.. +-|......++..+...|+.+++.+++....... +.|...+..+..+|...|+.
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccc
Confidence 88899999999999999988874 2256677888888888899888777777544433 34455677888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 440 EEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
++|..+|++..+.. +.|..+...+.+++...|+.++|.++.++..+
T Consensus 231 ~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 231 EEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 99999999988752 44788888888899999999999988877654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-11 Score=115.70 Aligned_cols=285 Identities=9% Similarity=0.017 Sum_probs=216.9
Q ss_pred cCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHH
Q 011081 171 VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTF 250 (494)
Q Consensus 171 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 250 (494)
.|+ ++.|.+.+....+..-.| ...|.....+..+.|+.+.|.+.+.++.+.. |+....
T Consensus 97 eGd---~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~------------------~~~~~~ 154 (398)
T PRK10747 97 EGD---YQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA------------------DNDQLP 154 (398)
T ss_pred CCC---HHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------CcchHH
Confidence 478 999998877765543222 2223333445578899999999999997654 343222
Q ss_pred H--HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hHHH
Q 011081 251 N--ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV-------VAYN 321 (494)
Q Consensus 251 ~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~ 321 (494)
. .....+...|++++|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|.
T Consensus 155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 155 VEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2 33678889999999999999998875 446778889999999999999999999999988644322 2334
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR 401 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 401 (494)
.++.......+.+...++++.+... .+.+......+...+...|+.++|.+++++..+. .||... .++.+....+
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~ 308 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTN 308 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCC
Confidence 4444444555666777777776443 2567888899999999999999999999999884 444422 2334445669
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 402 RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLR 481 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 481 (494)
+.+++++..++..++.. -|...+.++...|.+.|++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.+++
T Consensus 309 ~~~~al~~~e~~lk~~P--~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHG--DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred ChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999987776653 34556788899999999999999999999964 899999999999999999999999999
Q ss_pred HHHHHc
Q 011081 482 KEMFEN 487 (494)
Q Consensus 482 ~~m~~~ 487 (494)
++-...
T Consensus 385 ~~~l~~ 390 (398)
T PRK10747 385 RDGLML 390 (398)
T ss_pred HHHHhh
Confidence 987653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-11 Score=118.10 Aligned_cols=285 Identities=11% Similarity=0.061 Sum_probs=217.1
Q ss_pred CCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHH-HHHHHHhcCChhcHHHHHHHHHHHHhCCCCcCh
Q 011081 118 ARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDL-LIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKV 196 (494)
Q Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 196 (494)
.|+++.|...+....+. .+.+..+-. ...+..+.|+ .+.|.+.+.++.+.......
T Consensus 97 eGd~~~A~k~l~~~~~~--------------------~~~p~l~~llaA~aA~~~g~---~~~A~~~l~~A~~~~~~~~~ 153 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--------------------AEQPVVNYLLAAEAAQQRGD---EARANQHLERAAELADNDQL 153 (398)
T ss_pred CCCHHHHHHHHHHHHhc--------------------ccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCcchH
Confidence 48888888666654331 222333333 3444578898 99999999999874333222
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
.........+...|+++.|.+.++++.+..|. +......+...|.+.|++++|.+++..+.+.
T Consensus 154 ~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-----------------~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 154 PVEITRVRIQLARNENHAARHGVDKLLEVAPR-----------------HPEVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------------CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 22223467888999999999999999887655 7788999999999999999999999999988
Q ss_pred CCCcCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 011081 277 GCEPDC-------YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVE 349 (494)
Q Consensus 277 g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 349 (494)
+..++. .+|..++....+..+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. .
T Consensus 217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~ 293 (398)
T PRK10747 217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--Q 293 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 654322 23444455455556667777777776443 2457888999999999999999999999999874 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 350 SSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFL 429 (494)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 429 (494)
++... .++.+....++.+++++..+...+.. +-|...+..+...+.+.+++++|.+.|+..+.. .|+...|..+
T Consensus 294 ~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~L 367 (398)
T PRK10747 294 YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWL 367 (398)
T ss_pred CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHH
Confidence 55532 23444556699999999999998874 335667888899999999999999999976654 5999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 011081 430 IKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~ 451 (494)
..++.+.|+.++|.+++++-..
T Consensus 368 a~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-11 Score=104.30 Aligned_cols=307 Identities=16% Similarity=0.140 Sum_probs=197.4
Q ss_pred CCCChhHHHHHHHhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHH
Q 011081 67 SGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEV 146 (494)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 146 (494)
+.++.+.|..+-+.+.++|+.|...|..+.... +-+..+--++-+.+.+.|..+.|+.++..+.++++...
T Consensus 33 ~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~------- 103 (389)
T COG2956 33 NRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTF------- 103 (389)
T ss_pred hhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCch-------
Confidence 446777777777888888888888888876432 33444555666777777777777777777766542110
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCC
Q 011081 147 LVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLD 226 (494)
Q Consensus 147 l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 226 (494)
-++ ..+...|..-|...|-++.|.++|..+.+.+
T Consensus 104 ------------------------------~qr----------------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ 137 (389)
T COG2956 104 ------------------------------EQR----------------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEG 137 (389)
T ss_pred ------------------------------HHH----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcch
Confidence 011 1112234445556666677777777665432
Q ss_pred cccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH----hHHHHHHHHHHhcCCHHHHH
Q 011081 227 SDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC----YSYSVLMAVFCEERRMREAE 302 (494)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~ 302 (494)
. --......|+..|-+..+|++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|.
T Consensus 138 e-----------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 138 E-----------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred h-----------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 1 13445566777777777777777777777665433322 23555556666667788888
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
.++.+..+.+ +.++.+--.+.+.+...|+++.|++.++...+.+..--..+...|..+|...|+.++....+..+.+..
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8888877764 223444445667778888888888888888877655555667778888888888888888888887753
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 011081 383 FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE---EGKMEEALKVQAEMVG 451 (494)
Q Consensus 383 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 451 (494)
. ....-..+..........+.|..++.+.+.. +|+...+..+|..-.. .|...+-..++..|..
T Consensus 280 ~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 T--GADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred C--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3 3333444444445555666676666655655 4888888888876543 3445556666666664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=131.05 Aligned_cols=262 Identities=13% Similarity=0.105 Sum_probs=113.8
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCC-CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccc
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRG-LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVV 241 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
.+-..+.+.|+ +++|+++++...... ..-+...|..+.......++.+.|.+.++++...++.
T Consensus 13 ~~A~~~~~~~~---~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~------------- 76 (280)
T PF13429_consen 13 RLARLLYQRGD---YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------
Confidence 34566778888 999999996654433 2335566666666777789999999999999776542
Q ss_pred ccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHH
Q 011081 242 RVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN-VEHDVVAY 320 (494)
Q Consensus 242 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~ 320 (494)
+...+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+.+...|
T Consensus 77 ----~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 149 (280)
T PF13429_consen 77 ----NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFW 149 (280)
T ss_dssp ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHH
T ss_pred ----ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 45567777776 7899999999999887665 3566778889999999999999999999987542 35678889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
..+...+.+.|+.++|++.|++..+.. +-|....+.++..+...|+.+++.++++...+.. +.|...+..+..++...
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccc
Confidence 999999999999999999999999874 4467888899999999999999999998887764 45667788899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
|+.++|+..|++..... +.|..+...+..++...|+.++|.++..+..+
T Consensus 228 g~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 99999999999877654 34777888999999999999999999887754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=122.91 Aligned_cols=290 Identities=12% Similarity=0.036 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
.++|+..|...... +.-+..+...+..+|...+++++|.++|+.+....+. ..-+...|.+.+-.
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--------------rv~~meiyST~LWH 399 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--------------RVKGMEIYSTTLWH 399 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------cccchhHHHHHHHH
Confidence 67888888885543 2223466777889999999999999999999877664 23367778887765
Q ss_pred HHhcCCHhHHHHHH-HHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011081 257 FYREGAFEKVEDVW-VEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 257 ~~~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
+-+.- ++.++ +++.+.. +-...+|.++.+.|.-+++.+.|++.|++..+.+ +....+|+.+..=+.....+|.
T Consensus 400 Lq~~v----~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 400 LQDEV----ALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDK 473 (638)
T ss_pred HHhhH----HHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHh
Confidence 43322 22222 2222222 3356799999999999999999999999998874 3377888888888888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
|...|+..+... +.+-..|.-+...|.+.++++.|+-.|+...+.+ +-+.+....+...+.+.|+.++|++++++++.
T Consensus 474 a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 474 AMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 999999887432 2233344456778899999999999999988765 33666677777888899999999999997765
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccccC
Q 011081 416 KFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQED 493 (494)
Q Consensus 416 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~pd~ 493 (494)
-... |+..--..+..+...+++++|++.++++++. .|+ ..+|..+...|.+.|+.+.|+.-|--+.+.++++.+
T Consensus 552 ld~k--n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 552 LDPK--NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cCCC--CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5432 3333333455667789999999999999864 554 667777888999999999999999999888887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-11 Score=116.04 Aligned_cols=300 Identities=10% Similarity=0.035 Sum_probs=213.5
Q ss_pred HHHHHHHHHH--HCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh-hHHHHHHHHHhcCChhcHHHHHHH
Q 011081 107 SYATIIHILS--RARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF-VFDLLIKCCLEVKNIEKIETCVDI 183 (494)
Q Consensus 107 ~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~li~~~~~~~~~~~~~~a~~~ 183 (494)
.+..+.+++. ..|+++.|.+.+....+. .+++. .+-....+..+.|+ .+.|.+.
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------------------~~~~~~~~llaA~aa~~~g~---~~~A~~~ 140 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--------------------AAEPVLNLIKAAEAAQQRGD---EARANQH 140 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------------------CCCCHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 3445555554 358898888888765542 23332 23344566778899 9999999
Q ss_pred HHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCH
Q 011081 184 VRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAF 263 (494)
Q Consensus 184 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 263 (494)
+.+..+....+.....-.....+...|+++.|.+.++.+.+..|. +...+..+...+.+.|++
T Consensus 141 l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-----------------~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 141 LEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-----------------HKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHHhhH
Confidence 999877543333334444577888899999999999999887654 677889999999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHH-HHHHHH---HhcCCHHHHHHHHHHHHhCCC---CCCHhHHHHHHHHHHccCCHHHH
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYS-VLMAVF---CEERRMREAEKLWEEMRDKNV---EHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A 336 (494)
++|.+++..+.+.++. +...+. .-..++ ...+..+.+.+.+..+.+... +.+...+..+...+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 204 QALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 9999999999998744 333332 111222 233333333445555544321 23788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 337 EEFFREMGLSGVESSSVT---FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG--STIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
.+++++..+.. ||... ...........++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+
T Consensus 283 ~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 283 QEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99999999863 33331 1222222334578888999998887763 2233 456688889999999999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 412 ARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 412 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
. .......|+...+..+...+.+.|+.++|.+++++...
T Consensus 360 ~-a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 360 N-VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred H-hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 22233469999999999999999999999999998653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-10 Score=111.87 Aligned_cols=331 Identities=13% Similarity=0.083 Sum_probs=244.8
Q ss_pred HHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCC
Q 011081 112 IHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRG 191 (494)
Q Consensus 112 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g 191 (494)
...+...|++++|..++.++++. ...++..|-+|...|...|+ .+++...+-..--..
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkq-------------------dp~~~~ay~tL~~IyEqrGd---~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQ-------------------DPRNPIAYYTLGEIYEQRGD---IEKALNFWLLAAHLN 203 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh-------------------CccchhhHHHHHHHHHHccc---HHHHHHHHHHHHhcC
Confidence 33444449999999999998873 34567889999999999999 888888765554443
Q ss_pred CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011081 192 LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWV 271 (494)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (494)
.+ |...|-.+.....+.|.++.|.-.|.++++.+|. +....---+..|-+.|+...|.+-|.
T Consensus 204 p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-----------------n~~~~~ers~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 204 PK-DYELWKRLADLSEQLGNINQARYCYSRAIQANPS-----------------NWELIYERSSLYQKTGDLKRAMETFL 265 (895)
T ss_pred CC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-----------------chHHHHHHHHHHHHhChHHHHHHHHH
Confidence 33 6688989998999999999999999999887653 55555566778889999999999999
Q ss_pred HHHHcCCCcCHhHH----HHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 272 EMARLGCEPDCYSY----SVLMAVFCEERRMREAEKLWEEMRDK-NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 272 ~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
++....-+.|..-+ -.+++.+...++-+.|.+.++..... +-..+...++.++..|.+...++.|.....++...
T Consensus 266 ~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r 345 (895)
T KOG2076|consen 266 QLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR 345 (895)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc
Confidence 99876422222222 33455666677778888888877652 22446677889999999999999999988888762
Q ss_pred CCCCCHHHH--------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHH
Q 011081 347 GVESSSVTF--------------------------EHLVNGYCRAGDVDSAILVYNDMCRKGFEP--EGSTIEVLIGELC 398 (494)
Q Consensus 347 ~~~~~~~~~--------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~ 398 (494)
...+|..-| -.+.-++......+....+...+.+..+.| +...|.-+..+|.
T Consensus 346 ~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~ 425 (895)
T KOG2076|consen 346 ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT 425 (895)
T ss_pred ccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Confidence 222222111 123334455555556666666666666433 5667888999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMA 477 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a 477 (494)
..|++.+|+.+|.... ....--+...|-.+..+|...|..++|.+.|+..+.. .|+ ...--+|-..+.+.|+.++|
T Consensus 426 ~~~~~~~Al~~l~~i~-~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPIT-NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred hcccHHHHHHHHHHHh-cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHH
Confidence 9999999999998544 4333445778889999999999999999999999965 444 55556677778899999999
Q ss_pred HHHHHHHH
Q 011081 478 TMLRKEMF 485 (494)
Q Consensus 478 ~~~~~~m~ 485 (494)
.+.++.+.
T Consensus 503 lEtL~~~~ 510 (895)
T KOG2076|consen 503 LETLEQII 510 (895)
T ss_pred HHHHhccc
Confidence 99999887
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-11 Score=108.87 Aligned_cols=259 Identities=12% Similarity=0.045 Sum_probs=140.9
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccc
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRV 243 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
+..++-.... .+++++-.......|+.-+...-+....+.-...+++.|..+|+++.+.+|..
T Consensus 233 ~~~a~~el~q---~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR-------------- 295 (559)
T KOG1155|consen 233 LKKAYQELHQ---HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR-------------- 295 (559)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc--------------
Confidence 3445555555 88888888888888887666666666667778899999999999999887751
Q ss_pred ccCHHHHHHHHHHHHhcCCHhH---HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEK---VEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
--|..+|..++-. +..+-.- |..++. -.... ..|...+.+-|+-.++.++|...|++..+.+ +.....|
T Consensus 296 l~dmdlySN~LYv--~~~~skLs~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aW 367 (559)
T KOG1155|consen 296 LDDMDLYSNVLYV--KNDKSKLSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAW 367 (559)
T ss_pred chhHHHHhHHHHH--HhhhHHHHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHH
Confidence 1244455444322 1111111 111110 11111 2344444555555555555555555555543 2234455
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
+.+..-|....+...|.+-|+...+-+ +.|-..|-.|.++|.-.+...=|+-.|++..+-. +-|...|.+|...|.+.
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHh
Confidence 555555555555555555555555443 4455555555555555555555555555554432 22445555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
++.++|++.|.+.+.-.. .+...|..|.+.|-+.++.++|...|.+-++
T Consensus 446 ~~~~eAiKCykrai~~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555555555554333221 1334455555555555555555555554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-10 Score=109.87 Aligned_cols=369 Identities=12% Similarity=0.061 Sum_probs=261.0
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF 159 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (494)
..+|+.+.|.+++..+.++. +-....|-.+...+-..|+.+.+...+-.+.... ..+..
T Consensus 150 farg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------------------p~d~e 208 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------------------PKDYE 208 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------------------CCChH
Confidence 34589999999999998776 4567889999999999999999877665544322 22334
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKR 239 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
.|..+-....+.|. +++|.-.|.+.++.... +...+---...|-+.|+...|.+-|.++....|.
T Consensus 209 ~W~~ladls~~~~~---i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~----------- 273 (895)
T KOG2076|consen 209 LWKRLADLSEQLGN---INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP----------- 273 (895)
T ss_pred HHHHHHHHHHhccc---HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-----------
Confidence 55555666677788 99999999999987543 5555555667899999999999999999876542
Q ss_pred ccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------
Q 011081 240 VVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN------ 312 (494)
Q Consensus 240 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------ 312 (494)
..+......--.++..|...++-+.|.+.++..... +-..+...++.++..+.+...++.|......+....
T Consensus 274 -~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 274 -VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred -hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 001112222334456677777778888888877663 223455678889999999999999988888776621
Q ss_pred ---------------------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 011081 313 ---------------------VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG--VESSSVTFEHLVNGYCRAGDVD 369 (494)
Q Consensus 313 ---------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~ 369 (494)
+.++..++ -++-++......+....+..-+.+.. +.-+...|.-+..+|...|++.
T Consensus 353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~ 431 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK 431 (895)
T ss_pred hhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH
Confidence 12222221 12233334444444444444444444 3345677888999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
+|+.+|..+......-+...|..+..+|-..|..++|.+.|+..+.......| .--.|...+-+.|+.++|.+.+..+
T Consensus 432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D--~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 432 EALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD--ARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh--hhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 99999999988765566778999999999999999999999977765433233 3345667788999999999999986
Q ss_pred H--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 011081 450 V--------GKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 450 ~--------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
. ..+..|+........+.+...|+.++-......|+...
T Consensus 510 ~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 510 INPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred cCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4 22345556666667778888899888777777666543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-10 Score=99.39 Aligned_cols=291 Identities=9% Similarity=0.043 Sum_probs=234.0
Q ss_pred cCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHH
Q 011081 171 VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTF 250 (494)
Q Consensus 171 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 250 (494)
.|+ +..|..+..+-.+.+-. ....|..-..+-...|+.+.+-..+.++-+..+ .++....
T Consensus 97 eG~---~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~----------------~~~l~v~ 156 (400)
T COG3071 97 EGD---FQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG----------------DDTLAVE 156 (400)
T ss_pred cCc---HHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC----------------CchHHHH
Confidence 467 99999999988877755 345566667778889999999999999977532 3466677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hHHHHH
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV-------VAYNTI 323 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~l 323 (494)
-+........|+++.|..-++++.+.+ +-+.........+|.+.|++.....+...|.+.|.-.+. .+|+.+
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 778888899999999999999999886 556778888999999999999999999999998865554 357777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
++=....+..+.-...+++.... .+.++..-.+++.-+.+.|+.++|.++.++..+++..|. -...-.+.+-++.
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCc
Confidence 77666666666655666665443 355666777888899999999999999999999887766 2223345677888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 404 FEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
..-++..+...+..+..| ..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++
T Consensus 311 ~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 888888888888887766 5678899999999999999999998874 589999999999999999999999999988
Q ss_pred HHHccccc
Q 011081 484 MFENQVRQ 491 (494)
Q Consensus 484 m~~~~~~p 491 (494)
..-.-..|
T Consensus 387 ~L~~~~~~ 394 (400)
T COG3071 387 ALLLTRQP 394 (400)
T ss_pred HHHHhcCC
Confidence 77544333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-10 Score=116.36 Aligned_cols=269 Identities=10% Similarity=-0.006 Sum_probs=185.2
Q ss_pred ChhhHHHHHHHHHh--cCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHH---------cCCChhHHHHHHHHHhcC
Q 011081 157 APFVFDLLIKCCLE--VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVS---------RGKGVISGYEIYREVFGL 225 (494)
Q Consensus 157 ~~~~~~~li~~~~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~ 225 (494)
+...|...+++-.. ....+..++|++.|++..+.... +...|..+..++. ..+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 34555566655322 22223478999999999885433 4555655555443 234478999999999887
Q ss_pred CcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHH
Q 011081 226 DSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLW 305 (494)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 305 (494)
+|. +..+|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+
T Consensus 334 dP~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 334 DHN-----------------NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred CCC-----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 765 78888888889999999999999999998875 445667888889999999999999999
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 306 EEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
++..+.... +...+..++..+...|++++|...++++.....+-+...+..+...+...|+.++|...+.++... .|
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~ 472 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EI 472 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence 999887422 233344455556778999999999999876542224555777888888999999999999887654 33
Q ss_pred C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 386 E-GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 386 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
+ ....+.+...|+..| ++|...++...+.....+....+.. ..|.-.|+-+.+..+ +++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhcc
Confidence 3 333445555666666 4777766654444433343333333 334455666666655 777654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-11 Score=112.54 Aligned_cols=261 Identities=15% Similarity=0.140 Sum_probs=210.2
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCC--cChHhHHHHHHHHHcCCChhHHHHHH-HHHhcCCcccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLS--VKVSTCNALIWEVSRGKGVISGYEIY-REVFGLDSDATAGIG 234 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~ 234 (494)
.++..-+.++|...++ +++|..+|+.+.+...- -+...|.+.++-+.+. -++..+ +.+.+.++.
T Consensus 353 ~wvl~q~GrayFEl~~---Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~~~------ 419 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIE---YDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTDPN------ 419 (638)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhCCC------
Confidence 4667778899999999 99999999999875422 2678898888776652 222222 233333332
Q ss_pred cccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 235 KDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 314 (494)
...+|.++.++|.-.++.+.|++.|++..+.. +-...+|+.+.+-+.....+|.|...|+..+..
T Consensus 420 -----------sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 420 -----------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred -----------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 67999999999999999999999999998763 237889999999999999999999999998854
Q ss_pred CCHhHHH---HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 011081 315 HDVVAYN---TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIE 391 (494)
Q Consensus 315 ~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 391 (494)
|...|| -+...|.+.++++.|+-.|+...+-+ +.+.+....+...+-+.|+.|+|+++|++....+. -|...-.
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~ 561 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKY 561 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHH
Confidence 555555 56778999999999999999998876 66788888899999999999999999999988763 3555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 392 VLIGELCDKRRVFEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 392 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.....+...++.++|+..++ .+++. .|+ ...|..+...|-+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LE-eLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELE-ELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHH-HHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 66677788999999999998 55542 354 456778889999999999999999999865
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-10 Score=103.03 Aligned_cols=166 Identities=10% Similarity=0.119 Sum_probs=125.0
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
-+.|+..+.+-|+-.++.++|...|++.++.++. ....|+.|..-|.+..+...|.+-++..+
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-----------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-----------------YLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-----------------hhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 3556666677777777788888888888776643 66778888888888888888888888877
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
+.+ +.|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..+...
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~ 468 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSA 468 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHH
Confidence 765 5577778888888888888888888888777653 4467778888888888888888888888877765 445677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
+..|...|-+.++.++|.+.|+.-++
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77788888888888888777766554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-09 Score=100.29 Aligned_cols=238 Identities=12% Similarity=0.008 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...|-+-+..-.++.++++|..+|.+.... .|+...|..-++.-.-.+..++|.+++++.++. ++.-...|-.+.+
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 4444555555555555555555555544432 344444444444444445555555555444443 1112233444444
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
.+-+.++++.|.+.|..-.+. ++-..-.|..|...--+.|++-.|..+++...-.+ +-+...|...|..-.+.|+.+.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 444445555554444433322 12233344444444444444445555554444433 2234444444444444454444
Q ss_pred HHHHHHHHHHhC----------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 406 ALDILKARVVKF----------------------------GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 406 a~~~~~~~~~~~----------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
|..++.+.+.+. .+.-|....-.+...|-...++++|.+.|.+.++. .||
T Consensus 772 a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d 849 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPD 849 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCc
Confidence 444443333221 12345566667777777888999999999999965 444
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 458 -LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 458 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
..+|.-+...+.++|.-++-.++++......+.
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 678888999999999999999999888776554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-09 Score=104.77 Aligned_cols=322 Identities=15% Similarity=0.069 Sum_probs=142.5
Q ss_pred chhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHH
Q 011081 85 PHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLL 164 (494)
Q Consensus 85 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 164 (494)
.+.|.+-|..+.+++ +++.-.+---....-..+++..|..+|..++.... .+.+++ .-.+
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp----------------~~~aD~--rIgi 205 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINP----------------ACKADV--RIGI 205 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCc----------------ccCCCc--cchh
Confidence 467888899887665 34433333223333355789999999988665321 111111 1112
Q ss_pred HHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHH---cCCChhHHHHHHHHHhcCCccccccccccccccc
Q 011081 165 IKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVS---RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVV 241 (494)
Q Consensus 165 i~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
-.++.+.|+ .+.|+..|.+..+..+. ++.++..|.-.-. ....+..+..++......++.
T Consensus 206 g~Cf~kl~~---~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~------------- 268 (1018)
T KOG2002|consen 206 GHCFWKLGM---SEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE------------- 268 (1018)
T ss_pred hhHHHhccc---hhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-------------
Confidence 233444455 55555555555443221 2222222211111 112233444444444443332
Q ss_pred ccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011081 242 RVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE--PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 242 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
|.+..+.|.+.|.-.|++..+..+...+...... .-...|..+.++|-..|++++|..+|.+..+..-..-+..
T Consensus 269 ----nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 269 ----NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred ----CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 4444455555555555555555555554443210 0112344455555555555555555555444321111222
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG----DVDSAILVYNDMCRKGFEPEGSTIEVLIG 395 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 395 (494)
+--+.++|.+.|+++.+...|+...+.. +-+..+...|...|...+ ..++|..++....+.. ..|...|..+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 3334455555555555555555554442 333344444444444332 2344444444443332 223444444444
Q ss_pred HHHhcCCHHHHHHHHHHH---HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 396 ELCDKRRVFEALDILKAR---VVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 396 ~~~~~~~~~~a~~~~~~~---~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
.+....-+.. +.+|... +...+..+.....|.+.......|++++|...|....
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 4333222222 3333221 1222223444445555555555555555555555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-10 Score=104.03 Aligned_cols=207 Identities=15% Similarity=0.170 Sum_probs=137.9
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
..|++++|.+.|++.+...-.-....|| +.-.+-+.|++++|+..|-.+... +..+..+...+...|-...+..+|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3566777777777766543211122222 223455667777777776655322 12356666667777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 011081 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFG 418 (494)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 418 (494)
++-+.... ++.|+...+.|...|-+.|+-.+|++.+-+--+. ++-+..+...|...|....-+++++.+|++.. -
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---l 654 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---L 654 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---h
Confidence 77655433 4567777788888888888888888776654433 34567777777777888888888888887433 3
Q ss_pred CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 419 LFPTEKSYMFLIKGLC-EEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGN 473 (494)
Q Consensus 419 ~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 473 (494)
+.|+..-|..+|..|. +.|++++|.++++...+. ++-|.....-|++.+...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 5688888877776554 578888888888887664 67778888888887777764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-10 Score=103.60 Aligned_cols=264 Identities=12% Similarity=0.093 Sum_probs=191.3
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCcCH
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG-AFEKVEDVWVEMARLGCEPDC 282 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~ 282 (494)
-.|.+.|+++.|.++++-+.+.+.. ..+...-|..+--|.+.| ++..|..+-+...... .-+.
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk---------------~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~ 490 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNK---------------TASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNA 490 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccch---------------hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCH
Confidence 3567889999999998888766542 223333333333444444 6888888887776543 3344
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
...+.-.+.....|++++|.+.|.+.+...-......|| +.-.+-..|++++|++.|-++..- +..+......+...|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiy 568 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIY 568 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 444444445566899999999999998764333333343 334567889999999999887543 244667777888889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 363 CRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEA 442 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 442 (494)
....+..+|++++-+.... ++.|...++.|...|-+.|+-.+|.+.+.+..+ -++-+..+...|...|....-+++|
T Consensus 569 e~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHH
Confidence 9999999999998887543 455788889999999999999999988764332 2345677888888888888888999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcccc
Q 011081 443 LKVQAEMVGKGFEPSLEIYSAFIDGY-MKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+.+|++.. -+.|+..-|..+|..| .+.|++++|.++++.....-+.
T Consensus 646 i~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 646 INYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 99999876 4799999999888755 5669999999999988776443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-09 Score=108.67 Aligned_cols=385 Identities=10% Similarity=0.073 Sum_probs=246.2
Q ss_pred hccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCC----ChhHHHHHHHHHHc-----------------CCCCCC
Q 011081 81 LKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRAR----LIGPARDVIRVALR-----------------SPENDP 139 (494)
Q Consensus 81 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~-----------------~~~~~~ 139 (494)
..++.+.+...|..+..+. +-+..+-..+-..|+..+ ..+.|..++....+ .+....
T Consensus 354 ~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence 3445555655555554332 223344444444444332 33455555444433 222222
Q ss_pred hHHHHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhC---CCCcCh------HhHHHHHHHHHc
Q 011081 140 KLKLFEVLVKTYRECG--SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSR---GLSVKV------STCNALIWEVSR 208 (494)
Q Consensus 140 ~~~~~~~l~~~~~~~~--~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~---g~~~~~------~~~~~ll~~~~~ 208 (494)
.+..+...++.+...+ ..+...|.+.......|. ++.|.+.|...... ...++. .+--.+..++-.
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~---~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~ 508 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN---IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE 508 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC---hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh
Confidence 3444444443333222 345667777777777777 77777777776554 111222 122223444455
Q ss_pred CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHH
Q 011081 209 GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVL 288 (494)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 288 (494)
.++.+.|.++|..+....|. -+..|--+.......+...+|...++...... ..+...++.+
T Consensus 509 l~~~~~A~e~Yk~Ilkehp~-----------------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~ 570 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEHPG-----------------YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLL 570 (1018)
T ss_pred hhhhhHHHHHHHHHHHHCch-----------------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHH
Confidence 56777777777777654321 23334444433334567888888888877654 4456666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHc------------cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKN-VEHDVVAYNTIIGGFCE------------IGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
...+.+...+..|.+-|....+.- ..+|..+.-+|.+.|.+ .+..++|+++|.+.+... +.|...-
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAA 649 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAA 649 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhc
Confidence 778888888888888777765532 12466666666665542 245678999999888876 6677888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE 435 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 435 (494)
|-+.-.++..|++.+|..+|.++.+... -+..+|..+.++|...|++..|+++|+..+++..-.-+......|..++.+
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 8888889999999999999999988753 355678889999999999999999999999888877788889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHHHcccc
Q 011081 436 EGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGY------------------MKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~------------------~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.|.+.+|.+...........-....||..+-.. ...+..+.|.++|.+|...+.+
T Consensus 729 ~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999888877553332344555443321 1224567788888888776544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-09 Score=96.02 Aligned_cols=294 Identities=12% Similarity=0.109 Sum_probs=232.6
Q ss_pred HHHHHHHH--CCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh-hhHHHHHHHHHhcCChhcHHHHHHHHHH
Q 011081 110 TIIHILSR--ARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP-FVFDLLIKCCLEVKNIEKIETCVDIVRM 186 (494)
Q Consensus 110 ~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~li~~~~~~~~~~~~~~a~~~~~~ 186 (494)
.+..++.+ .|+|..|+.+.....+.+ ..| ..|-.-..+.-+.|+ .+.+-..+.+
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~--------------------e~p~l~~l~aA~AA~qrgd---~~~an~yL~e 143 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG--------------------EQPVLAYLLAAEAAQQRGD---EDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC--------------------cchHHHHHHHHHHHHhccc---HHHHHHHHHH
Confidence 44555554 488888888877654422 222 334455666777888 9999999999
Q ss_pred HHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHH
Q 011081 187 LMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKV 266 (494)
Q Consensus 187 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 266 (494)
.-+..-+++....-+........|+.+.|..-.+++.+..+. +.........+|.+.|++.+.
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-----------------~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-----------------HPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-----------------ChHHHHHHHHHHHHhccHHHH
Confidence 988755667788888888999999999999999999876643 778889999999999999999
Q ss_pred HHHHHHHHHcCCCcCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011081 267 EDVWVEMARLGCEPDC-------YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEF 339 (494)
Q Consensus 267 ~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (494)
..++..|.+.|.-.|. .+|+.+++-....+..+.-...|+..... ...++..-.+++.-+.++|+.++|.++
T Consensus 207 l~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~ 285 (400)
T COG3071 207 LAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEI 285 (400)
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHH
Confidence 9999999999866554 36778888777777777777778777543 244677778899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 011081 340 FREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGL 419 (494)
Q Consensus 340 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 419 (494)
.++..+.+..|. -...-.+.+-++.+.-++..+.-.+.. +-+...+..|-..|.+.+.+.+|...|+..++.
T Consensus 286 i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--- 357 (400)
T COG3071 286 IEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--- 357 (400)
T ss_pred HHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc---
Confidence 999998876666 223345667788888777777766543 224477888999999999999999999966544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 420 FPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 420 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.|+..+|+.+..++.+.|+.++|.+++++....
T Consensus 358 ~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 358 RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 599999999999999999999999999987744
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-10 Score=116.43 Aligned_cols=266 Identities=10% Similarity=0.031 Sum_probs=188.4
Q ss_pred ChHhHHHHHHHHHc-----CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHh---------c
Q 011081 195 KVSTCNALIWEVSR-----GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR---------E 260 (494)
Q Consensus 195 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~---------~ 260 (494)
+...|...+.+... .+..++|.+.|++..+.+|. +...|..+..+|.. .
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-----------------~a~a~~~La~~~~~~~~~g~~~~~ 317 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-----------------SIAPYCALAECYLSMAQMGIFDKQ 317 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-----------------cHHHHHHHHHHHHHHHHcCCcccc
Confidence 44555555555322 23467999999999887664 56667666655542 3
Q ss_pred CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 011081 261 GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFF 340 (494)
Q Consensus 261 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (494)
+++++|...+++..+.. +-+..++..+...+...|++++|...|++..+.+ +.+...|..+...|...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45889999999998875 4467788888889999999999999999999875 446778889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 011081 341 REMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF 420 (494)
Q Consensus 341 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 420 (494)
++..+.. +.+...+..++..+...|++++|...++++.+...+-+...+..+...+...|+.++|...+.+.... .
T Consensus 396 ~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~ 471 (553)
T PRK12370 396 NECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---E 471 (553)
T ss_pred HHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---c
Confidence 9998874 22333344455556778999999999999887642223445677778888999999999999854433 2
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 011081 421 PT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK-GFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 421 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
|+ ....+.+...|+..| ++|...++.+.+. .-.+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33 334455556667777 5888877777654 222222222 33345556776666666 7776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-10 Score=100.88 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443332 2233344444444444444444444444444432 2233344444444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011081 365 AGDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEAL 443 (494)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 443 (494)
.|++++|.+.++...+....+ ....+..+...+...|++++|.+.+.+.+.... .+...+..+...+...|++++|.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555544321111 222344444455555566666555554443321 22344555566666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 444 KVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
+.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666666554 233445555555666666666666666665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-13 Score=86.49 Aligned_cols=50 Identities=36% Similarity=0.852 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE 294 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 294 (494)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-10 Score=99.36 Aligned_cols=202 Identities=15% Similarity=0.116 Sum_probs=168.6
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 356778889999999999999999999998764 4456788889999999999999999999998875 44667888899
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
..|...|++++|.+.|++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999987532 2344567778889999999999999999998864 23466788888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 404 FEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
++|...+++.... ...+...+..+...+...|+.++|..+.+.+.+
T Consensus 186 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999976654 234566777788888899999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-12 Score=83.43 Aligned_cols=50 Identities=42% Similarity=0.717 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 421 PTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK 470 (494)
Q Consensus 421 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 470 (494)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-07 Score=90.21 Aligned_cols=305 Identities=11% Similarity=-0.029 Sum_probs=216.3
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
..+|..--..|.+.+. ++-|..+|...++.-. -+...|......--..|..++-..+|.++...-
T Consensus 516 ~~tw~~da~~~~k~~~---~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~----------- 580 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPA---IECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC----------- 580 (913)
T ss_pred HhHHhhhHHHHHhcch---HHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-----------
Confidence 3566667777777777 7888888877776422 255667666666666777888888888876543
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
+.....|-.....+-..|+...|..++.+..+.. +-+...|-.-+..-.....++.|..+|.+.... .|+.
T Consensus 581 ------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 581 ------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred ------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 2356677777788888888888888888887764 336677888888888888889999888887765 5677
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGEL 397 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 397 (494)
.+|.--+..-.-.++.++|.+++++..+. .+--...|..+.+.+-+.++.+.|...|..-.+. ++-..-.|..+...=
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 77766666666678888888888887765 2333456777777888888888888888765443 233344566666666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------------------------
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK------------------------- 452 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------- 452 (494)
-+.|.+-.|..+++....+. +-+...|-..|..=.+.|+.+.|..+..+.++.
T Consensus 730 Ek~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence 67788888888888655443 356677888888888889888888777666541
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 453 ----GFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 453 ----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
....|..+.-++...+....++++|++.|++..+.++.
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 12334444455555566667788888888888775544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.1e-09 Score=95.54 Aligned_cols=226 Identities=11% Similarity=0.072 Sum_probs=179.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
...+.-.|+.-.|..-|+..+...-. +...|.-+..+|....+.++..+.|+...+.+ +-|..+|..-.+++.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 33445578889999999998887533 23338888889999999999999999998876 55788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKAR 413 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 413 (494)
++|..=|++..... +-+...|..+..+..+.+++++++..|++.+++ ++--...|+.....+..+++++.|.+.|+..
T Consensus 411 e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 411 EEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999998765 556777888888888999999999999999876 4556788999999999999999999999977
Q ss_pred HHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 414 VVKFGL------FPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 414 ~~~~~~------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
+.-... .+.+.+-..++..-. .+++..|.+++.+.++. .| ....|..|...-.+.|+.++|+++|++-..
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 754322 122222223332222 38999999999999865 44 467899999999999999999999987654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-08 Score=87.93 Aligned_cols=350 Identities=14% Similarity=0.098 Sum_probs=207.3
Q ss_pred CchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChH-HHHHHHHHHhhhcCCChhhHH
Q 011081 84 NPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKL-KLFEVLVKTYRECGSAPFVFD 162 (494)
Q Consensus 84 ~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 162 (494)
+...|..+|..+..-. ..+...|---+.+=.+++.+..|+.+++.++..- |-+ .+|-.
T Consensus 88 e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyK---------------- 146 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYK---------------- 146 (677)
T ss_pred HHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHH----------------
Confidence 3445667777664322 2344567667777788888888888888877622 111 11111
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccc
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVR 242 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
-+..=...|+ +..|.++|++..+ ..|+...|++.++.-.+.+.++.|..+|+...-
T Consensus 147 -Y~ymEE~LgN---i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~------------------ 202 (677)
T KOG1915|consen 147 -YIYMEEMLGN---IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL------------------ 202 (677)
T ss_pred -HHHHHHHhcc---cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe------------------
Confidence 1111223466 8889999988876 578899999999998999999999999998854
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY----SYSVLMAVFCEERRMREAEKLWEEMRDKN------ 312 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g------ 312 (494)
+.|++.+|---...=.+.|+...|..+|....+. -.|.. .|.+....=.++..++.|.-+|+-.+..=
T Consensus 203 ~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~rae 280 (677)
T KOG1915|consen 203 VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAE 280 (677)
T ss_pred ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 4678888888777777888888888888777654 11222 23333333334555566655555444330
Q ss_pred -------------------------------------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---
Q 011081 313 -------------------------------------VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSS--- 352 (494)
Q Consensus 313 -------------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--- 352 (494)
-+-|-.+|--.+..-...|+.+...++|++...+ ++|-.
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 0223344444555555556666666666666554 23321
Q ss_pred ----HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCC
Q 011081 353 ----VTFEHLVNG---YCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC----DKRRVFEALDILKARVVKFGLFP 421 (494)
Q Consensus 353 ----~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~p 421 (494)
..|..+=.+ -....+.+.+.++|+..++. ++-...||..+--.|+ ++.++..|.+++-..+ |.-|
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cP 435 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCC
Confidence 111111111 12345566666666666552 3334445544433332 4556666666655433 4456
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 422 TEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
...+|...|..=.+.++++.+.+++++.++-+ +-+..+|......-...|+.+.|+.+|+-.+.
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 66666666666666677777777777766542 22456666665555666777777776666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-09 Score=103.78 Aligned_cols=229 Identities=14% Similarity=0.063 Sum_probs=154.2
Q ss_pred ccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcC-------CChhhHHHHHHHHH
Q 011081 97 HKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECG-------SAPFVFDLLIKCCL 169 (494)
Q Consensus 97 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~li~~~~ 169 (494)
...|+.|+.+||..+|.-||..|+.+.|- +|..|.... ....-.+|+.++.+.+..+ |.+++|..|..+|.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr 94 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYR 94 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHH
Confidence 45678999999999999999999999998 877775533 3334567888887644443 35689999999999
Q ss_pred hcCChhcHHHHHHHHHHHH----hCCCCcChHh--------------HHHHHHHHHcCCChhHHHHHHHHHhcCCcccc-
Q 011081 170 EVKNIEKIETCVDIVRMLM----SRGLSVKVST--------------CNALIWEVSRGKGVISGYEIYREVFGLDSDAT- 230 (494)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~----~~g~~~~~~~--------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 230 (494)
+.|+...++.+.+.+.... ..|+..-... -...+......|-++.+++++..+.....+..
T Consensus 95 ~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~ 174 (1088)
T KOG4318|consen 95 IHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPF 174 (1088)
T ss_pred hccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchH
Confidence 9999544455555333322 2332110000 01112222233444444444433311110000
Q ss_pred -c-------------ccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC
Q 011081 231 -A-------------GIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER 296 (494)
Q Consensus 231 -~-------------~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 296 (494)
. .+.+..+...+ .|+..+|.+++.+-..+|+.+.|..++.+|++.|++.+.+-|-.|+-+ .+
T Consensus 175 ~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~ 250 (1088)
T KOG4318|consen 175 QVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---IN 250 (1088)
T ss_pred HHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cc
Confidence 0 00011122223 799999999999999999999999999999999999998888888766 88
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 297 RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
+...+..+..-|.+.|+.|+..|+...+-.+.++|
T Consensus 251 ~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 251 AAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred cchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 88999999999999999999999877766555544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.3e-10 Score=96.47 Aligned_cols=238 Identities=11% Similarity=-0.008 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
|-.--+.|.++|.+.|.+.+|.+-|..-.+. .|-+.||-.|-..|.+..+.+.|+.++.+-.+. ++-|+....-+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3343477889999999999999999988876 677889999999999999999999999998876 2334444456777
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
.+-..++.++|.++|++..+.. +.++....++..+|.-.++.|-|+.+|+++++.|+. +...|+.+.-+|.-.++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8888999999999999998875 667778888888999999999999999999999965 77888888888889999999
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 406 ALDILKARVVKFGLFPT--EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
++.-|++.+... -.|+ ...|-.+-......|++..|.+-|+-.+... .-....++.|.-.-.+.|++++|..++..
T Consensus 377 ~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 377 VLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999988655432 1233 2345556667778899999999999988653 33467888888888899999999999998
Q ss_pred HHHcccc
Q 011081 484 MFENQVR 490 (494)
Q Consensus 484 m~~~~~~ 490 (494)
.....+.
T Consensus 455 A~s~~P~ 461 (478)
T KOG1129|consen 455 AKSVMPD 461 (478)
T ss_pred hhhhCcc
Confidence 8775543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-10 Score=109.37 Aligned_cols=244 Identities=14% Similarity=0.098 Sum_probs=135.8
Q ss_pred HHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccc-------cccccc-cccccCHHHHHHHH
Q 011081 183 IVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIG-------KDVKRV-VRVRPNVHTFNALM 254 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~p~~~~~~~li 254 (494)
++..+...|+.|+.+||.++|.-||..|+++.|- +|.-|.-.......+.- +.+... .--.|...||..|.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll 90 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL 90 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence 4555666777787778888888888777777776 66655432211111000 001000 11267788888888
Q ss_pred HHHHhcCCHhH---HHHHHHHHHH----cCCCcCHhHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011081 255 VGFYREGAFEK---VEDVWVEMAR----LGCEPDCYSY--------------SVLMAVFCEERRMREAEKLWEEMRDKNV 313 (494)
Q Consensus 255 ~~~~~~g~~~~---a~~~~~~m~~----~g~~p~~~~~--------------~~li~~~~~~g~~~~a~~~~~~m~~~g~ 313 (494)
.+|.+.||+.. +++.+..... .|+..-..-+ ..++....-.|-++.+.+++..+....-
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 88888887654 2221221111 1221111111 1122223333444444444433322110
Q ss_pred -CCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 011081 314 -EHDVVAYNTIIGGFCEIG-EMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIE 391 (494)
Q Consensus 314 -~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 391 (494)
.|-.+ .+.-+.... .+++-..+.+...+ .|++.+|.+++.+-...|+.+.|..++.+|.+.|++.+..-|.
T Consensus 171 ~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 171 NAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 01111 122222222 22333322222222 4788888888888888888888888888888888887877777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 392 VLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK 438 (494)
Q Consensus 392 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 438 (494)
.|+-+ .+...-+..+++ .|...|+.|+..|+.-.+..+..+|.
T Consensus 244 pLl~g---~~~~q~~e~vlr-gmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLR-GMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhc---CccchHHHHHHH-HHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77655 666666666665 77888888888888877777777555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.4e-07 Score=81.90 Aligned_cols=372 Identities=13% Similarity=0.071 Sum_probs=243.2
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhH
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVF 161 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (494)
.++..-|.++|.... .+.|+..+|.+.|+.=.+-...+.|+.+++..+-. .|.+..|-.-.
T Consensus 154 LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikya------------- 214 (677)
T KOG1915|consen 154 LGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYA------------- 214 (677)
T ss_pred hcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHH-------------
Confidence 356667777775433 35789999999999999999999999999987752 23333332222
Q ss_pred HHHHHHHHhcCChhcHHHHHHHHHHHHh-CCCC-cChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccc--------
Q 011081 162 DLLIKCCLEVKNIEKIETCVDIVRMLMS-RGLS-VKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA-------- 231 (494)
Q Consensus 162 ~~li~~~~~~~~~~~~~~a~~~~~~m~~-~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------- 231 (494)
+-=.+.|. +..|..+|+..++ .|-. .+...+.+....-.+++.++.|.-+|.-+++.-|....
T Consensus 215 ----rFE~k~g~---~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 215 ----RFEEKHGN---VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred ----HHHHhcCc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 22223333 4444444444333 1110 11222333333333444555555555544443332110
Q ss_pred ----------ccccc--cccc-------cccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH--hHHHHHHH
Q 011081 232 ----------GIGKD--VKRV-------VRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC--YSYSVLMA 290 (494)
Q Consensus 232 ----------~~~~~--~~~~-------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~ 290 (494)
|+.+. .++. ..-.-|-.+|-..+..-...|+.+...++|++.+.. ++|-. ..|.-.|-
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH
Confidence 00000 0111 111337888888888888899999999999998865 45522 12222211
Q ss_pred --------HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH----HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 291 --------VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII----GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 291 --------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
.=....+.+.+.++|+..++. ++-...|+.-+= .--.++.++..|.+++.... |..|-..+|...
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~Y 443 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGY 443 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHH
Confidence 123468899999999999884 344555554443 34457788999999988776 457888999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 359 VNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK 438 (494)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 438 (494)
|..-.+.++++.+..+|+..++-+ +-+..+|......-...|+.+.|..+|.-.+.+..+......|.+.|+.=...|.
T Consensus 444 IelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 999999999999999999999986 4478888888888888999999999999666655444455678888888888999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 011081 439 MEEALKVQAEMVGKGFEPSLEIYSAFIDGYM-----KEG-----------NVEMATMLRKEMFE 486 (494)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-----~~g-----------~~~~a~~~~~~m~~ 486 (494)
++.|..+++++++. .+-..+|-+...--. +.| ++..|+++|++...
T Consensus 523 ~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 523 FEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 99999999999976 344446655544222 334 56678888877643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-09 Score=92.98 Aligned_cols=236 Identities=13% Similarity=-0.022 Sum_probs=196.1
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
-..-+.+.++|.+.|...+|.+.|...++. .|-+.||-.|-++|.+..+...|+.++.+-.+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q------------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld 284 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ------------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD 284 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc------------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh
Confidence 344467889999999999999999998764 56788999999999999999999999999887
Q ss_pred cCCCcCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 276 LGCEPDCYSY-SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 276 ~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
. -|-.+|| .-..+.+-..++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+|+++.+.|+ .+...
T Consensus 285 ~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speL 360 (478)
T KOG1129|consen 285 S--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPEL 360 (478)
T ss_pred c--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHH
Confidence 6 4555555 556677888899999999999998874 55777888888889999999999999999999994 67888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE--GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKG 432 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 432 (494)
|+.+.-+|.-.+++|-++.-|.+....--.|+ ..+|..+-......|++..|.+.|+-.+... .-+...++.|.-.
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL 438 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVL 438 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHH
Confidence 99999999999999999999998876543343 4567777777788999999999998555432 3456788988888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 433 LCEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
-.+.|++++|..+++...+ +.|+
T Consensus 439 ~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HhhcCchHHHHHHHHHhhh--hCcc
Confidence 8999999999999998874 3555
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-08 Score=97.70 Aligned_cols=240 Identities=20% Similarity=0.181 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----C-CCcCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARL-----G-CEPDCYS-YSVLMAVFCEERRMREAEKLWEEMRDK-----NV- 313 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~- 313 (494)
..+...+...|...|+++.|+.++....+. | ..|...+ .+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555899999999999999999988764 2 1233333 334677889999999999999998642 31
Q ss_pred -CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 011081 314 -EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS-----GV-ESSS-VTFEHLVNGYCRAGDVDSAILVYNDMCRK---G 382 (494)
Q Consensus 314 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~ 382 (494)
+--..+++.|...|.+.|++++|..++++..+- |. .|.+ ..++.+...|+..+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122456788888999999999998888876432 21 2222 23566778899999999999999876552 1
Q ss_pred CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 011081 383 FEPE----GSTIEVLIGELCDKRRVFEALDILKARVVKF----G-LFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMVG- 451 (494)
Q Consensus 383 ~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 451 (494)
+.++ ..+++.|...|...|++.+|.+++++.+... + ..+ ....++.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3578899999999999999999999877543 1 111 234678888999999999999988887653
Q ss_pred ---CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 452 ---KGF-EPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 452 ---~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
.|. .|+ ..+|..|...|...|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 233 57899999999999999999999888764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-07 Score=90.96 Aligned_cols=294 Identities=15% Similarity=0.091 Sum_probs=198.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhC
Q 011081 111 IIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSR 190 (494)
Q Consensus 111 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~ 190 (494)
....+...|++++|++.++.-... .-+...........+.+.|+ .++|..++..+++.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-------------------I~Dk~~~~E~rA~ll~kLg~---~~eA~~~y~~Li~r 67 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-------------------ILDKLAVLEKRAELLLKLGR---KEEAEKIYRELIDR 67 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-------------------CCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 345677889999999988764331 11223445566778899999 99999999999998
Q ss_pred CCCcChHhHHHHHHHHHcC-----CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCH-h
Q 011081 191 GLSVKVSTCNALIWEVSRG-----KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAF-E 264 (494)
Q Consensus 191 g~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~ 264 (494)
++. |..-|..+..+..-. .+.+...++|+++....|. ..+...+.-.+.....+ .
T Consensus 68 NPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~------------------s~~~~rl~L~~~~g~~F~~ 128 (517)
T PF12569_consen 68 NPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR------------------SDAPRRLPLDFLEGDEFKE 128 (517)
T ss_pred CCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc------------------ccchhHhhcccCCHHHHHH
Confidence 754 555566666665322 2467778888888654432 12111111111111122 2
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCH--hHHHHHHHHHH
Q 011081 265 KVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----N----------VEHDV--VAYNTIIGGFC 328 (494)
Q Consensus 265 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g----------~~~~~--~~~~~li~~~~ 328 (494)
.+..++..+...|++ .+|+.|-..|....+.+-..+++...... + -+|+. .++.-+...|-
T Consensus 129 ~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 455666777777865 36777777777666666666666655432 1 12344 34566778888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALD 408 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 408 (494)
..|++++|++++++..+.. +-.+..|..-...+-..|++++|.+.++.....+. -|...-+..+..+.+.|++++|.+
T Consensus 206 ~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred HhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988863 33467788888899999999999999999988763 477777778888899999999999
Q ss_pred HHHHHHHhCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 409 ILKARVVKFGLFPTEKS--------YMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 409 ~~~~~~~~~~~~p~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
++. .....+..|-... ......+|.+.|++..|++.|....+
T Consensus 284 ~~~-~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 284 TAS-LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHH-hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 987 4444443332211 13445678899999888877666654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-08 Score=90.78 Aligned_cols=284 Identities=10% Similarity=0.015 Sum_probs=201.2
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
+....-..-|...++ +++..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+..|.
T Consensus 245 dll~~~ad~~y~~c~---f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~---------- 310 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCR---FKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS---------- 310 (611)
T ss_pred HHHHHHHHHHHHcCh---HHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC----------
Confidence 334444555666667 888888888877753 234455555566777777766665555566555443
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
...+|-++.--|.-.|+.++|.+.|.+..... +.=...|-...+.|+-.|..|+|...|...-+.= +-...
T Consensus 311 -------~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hl 381 (611)
T KOG1173|consen 311 -------KALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHL 381 (611)
T ss_pred -------CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcc
Confidence 67888888888888899999999998765442 1123578888888988999999988887765531 11111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----G--FEPEGSTIEV 392 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~~ 392 (494)
-+--+..-|.+.++++.|.++|.+..... +-|+...+-+.-.....+.+.+|..+|+..+.. + ..-...+++.
T Consensus 382 P~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 382 PSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 12223344667888899999998887664 667777888877777788889999988877631 0 1124456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 393 LIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK 470 (494)
Q Consensus 393 li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 470 (494)
|..+|.+.+++++|+..++..+... +.+..+|.++.-.|...|+++.|.+.|.+.+ .+.|+-.+-..++..+..
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 8888999999999999998777654 3567788888888888999999999999888 678888777777765443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-07 Score=91.98 Aligned_cols=292 Identities=16% Similarity=0.161 Sum_probs=203.8
Q ss_pred HHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc
Q 011081 166 KCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP 245 (494)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (494)
..+...|+ .++|++.+..-.+. +.............+.+.|+.++|..+|..+++.+|+
T Consensus 12 ~il~e~g~---~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd----------------- 70 (517)
T PF12569_consen 12 SILEEAGD---YEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD----------------- 70 (517)
T ss_pred HHHHHCCC---HHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------------
Confidence 34567788 99999999775543 3324566777888999999999999999999988765
Q ss_pred CHHHHHHHHHHHHhcC-----CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHhH
Q 011081 246 NVHTFNALMVGFYREG-----AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRM-REAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~ 319 (494)
|..-|..+..+..-.. +.+...++++++...- |.......+.-.+.....+ ..+..++..+...|++ .+
T Consensus 71 n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---sl 145 (517)
T PF12569_consen 71 NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SL 145 (517)
T ss_pred cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hH
Confidence 6666666666663332 5677788898887652 4433333333223222233 3455666777888854 35
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLS----G----------VESSSV--TFEHLVNGYCRAGDVDSAILVYNDMCRKGF 383 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 383 (494)
++.|-..|....+.+-..+++...... + -+|+.. ++.-+...|...|++++|+++++..+++.
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht- 224 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT- 224 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-
Confidence 666666676666655556666655432 1 134443 44666788999999999999999999874
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---
Q 011081 384 EPE-GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLE--- 459 (494)
Q Consensus 384 ~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--- 459 (494)
|+ ...|..-...+-+.|++.+|.+.++.. .... .-|...=+-.+..+.+.|++++|.+++....+.+..|-..
T Consensus 225 -Pt~~ely~~KarilKh~G~~~~Aa~~~~~A-r~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 225 -PTLVELYMTKARILKHAGDLKEAAEAMDEA-RELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 44 667888889999999999999998843 3322 2455555667788899999999999999998776544321
Q ss_pred ---HH--HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 460 ---IY--SAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 460 ---~~--~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.| .....+|.+.|++..|++-|..+.+.
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22 34456899999999999988777653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-06 Score=78.69 Aligned_cols=289 Identities=13% Similarity=0.082 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHhC-CCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSR-GLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV 255 (494)
Q Consensus 177 ~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 255 (494)
-..+...+-.+... -+.-|+.....+..++...|+.++|...|++....+++ ++.....-.-
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-----------------~i~~MD~Ya~ 274 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-----------------NVEAMDLYAV 274 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-----------------hhhhHHHHHH
Confidence 33444444333332 24457788889999999999999999999999877654 3444444444
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
.+.+.|++++...+...+.... .-+...|..-.......++++.|+.+-++.++.. +.+...|-.=...+...|+.++
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHH
Confidence 4567888888888887776542 2233444444555566788888988888887764 3455566555667788899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLI-GELC-DKRRVFEALDILKAR 413 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~~ 413 (494)
|.-.|+..+... +-+...|.-|+.+|...|++.+|...-+...+. +..+..+...+- ..+. ....-++|.+++++.
T Consensus 353 A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 353 AVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 999999887653 567789999999999999999988777665543 123444444331 2222 223446788887765
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 414 VVKFGLFPTE-KSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 414 ~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
++. .|+. ...+.+...|...|..+++..+++..+. ..||....+.|.+.+...+.+++|.+.|...+..+|+.
T Consensus 431 L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 431 LKI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hcc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 543 4553 3556777788889999999999998884 48898899999999998999999999888888777654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-07 Score=87.67 Aligned_cols=287 Identities=15% Similarity=0.034 Sum_probs=216.9
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCV 181 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~ 181 (494)
..++.......+-|-...++.+...+.+.+.+. .+..+..+-.=|.++...|+ ..+-.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-------------------dpfh~~~~~~~ia~l~el~~---~n~Lf 298 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-------------------DPFHLPCLPLHIACLYELGK---SNKLF 298 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-------------------CCCCcchHHHHHHHHHHhcc---cchHH
Confidence 445555555566666677777777777776653 34445556666777888888 77777
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG 261 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 261 (494)
.+=..+++.-+. .+.+|-++.--|...|+..+|++.|.+....++. =...|-.....|.-.|
T Consensus 299 ~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-----------------fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 299 LLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-----------------FGPAWLAFGHSFAGEG 360 (611)
T ss_pred HHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-----------------ccHHHHHHhHHhhhcc
Confidence 777777775433 6788888888888889999999999999776543 3567999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFR 341 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 341 (494)
..++|+..+...-+.= +-..--+--+.--|.+.++++.|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+
T Consensus 361 EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred hHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 9999999888765531 1111122234456888999999999999988763 5678888888888888999999999999
Q ss_pred HHHhC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 342 EMGLS----G--VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 342 ~m~~~----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
..+.. + ......+++.|..+|.+.+.+++|+..|++.+... +-+..++.++.-.|...|+++.|.+.|++.+
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL- 516 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL- 516 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH-
Confidence 87632 1 11245568899999999999999999999998874 5588899999999999999999999999765
Q ss_pred hCCCCCCHHHHHHHHHHHH
Q 011081 416 KFGLFPTEKSYMFLIKGLC 434 (494)
Q Consensus 416 ~~~~~p~~~~~~~li~~~~ 434 (494)
.+.|+..+-..++..+.
T Consensus 517 --~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 517 --ALKPDNIFISELLKLAI 533 (611)
T ss_pred --hcCCccHHHHHHHHHHH
Confidence 45688766666665443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-08 Score=90.11 Aligned_cols=95 Identities=11% Similarity=-0.065 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
|..+...|.+.|++++|...|+...+.. +.+...|+.+...|...|++++|.+.|++..+.. +-+..+|..+...+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444555555555555555544442 2234455555555555555555555555554432 2233444444444555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 011081 365 AGDVDSAILVYNDMCRK 381 (494)
Q Consensus 365 ~g~~~~a~~~~~~m~~~ 381 (494)
.|++++|.+.|+...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-07 Score=87.13 Aligned_cols=316 Identities=10% Similarity=0.026 Sum_probs=182.8
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcC-hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc--c
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVK-VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK--R 239 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~ 239 (494)
....-|.++|. +++|++.|...++. .|+ +..|.....+|...|+|+++.+.-...++.+|+..-.+.+.++ +
T Consensus 120 ~~GN~~f~~kk---Y~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKK---YDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhccc---HHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34455778888 99999999999884 566 7788888889999999999998888888877652211111100 0
Q ss_pred ccc---cccCHHHHHHHHHHHHhcCCHhHHHHHHHHH--------HH-cC--CCcCHhHHHHHHHH--------------
Q 011081 240 VVR---VRPNVHTFNALMVGFYREGAFEKVEDVWVEM--------AR-LG--CEPDCYSYSVLMAV-------------- 291 (494)
Q Consensus 240 ~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m--------~~-~g--~~p~~~~~~~li~~-------------- 291 (494)
..| -....+|-..+..+|....-...+.++++.. .+ .+ +-|......+....
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 000 0111222233333333222222233333321 11 11 22222111111100
Q ss_pred -------------------------------------------------------------HHhcCCHHHHHHHHHHHHh
Q 011081 292 -------------------------------------------------------------FCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 292 -------------------------------------------------------------~~~~g~~~~a~~~~~~m~~ 310 (494)
+.-.|+.-.|..-|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1123444455555555554
Q ss_pred CCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 011081 311 KNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTI 390 (494)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 390 (494)
.... +...|--+..+|....+.++..+.|.+....+ +-++.+|..-...+.-.+++++|..=|++.+..+ +-+...|
T Consensus 355 l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred cCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 4311 22225556667777777777777777777665 5566677777777777777777777777776654 2244555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------HHHH
Q 011081 391 EVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS---------LEIY 461 (494)
Q Consensus 391 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---------~~~~ 461 (494)
.-+.-+..+.+++++++..|++..++. +--+..|+.....+...++++.|.+.|+..++. .|+ +.+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhh
Confidence 566666667778888888887665554 334556777777788888888888888877753 332 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 462 SAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 462 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
-.++..-.+ +++..|.+++++.++.+++-
T Consensus 508 Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 508 KALLVLQWK-EDINQAENLLRKAIELDPKC 536 (606)
T ss_pred hhHhhhchh-hhHHHHHHHHHHHHccCchH
Confidence 222222222 77788888888887776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-07 Score=86.04 Aligned_cols=231 Identities=9% Similarity=-0.054 Sum_probs=160.2
Q ss_pred CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHH
Q 011081 210 KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLM 289 (494)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 289 (494)
+..+.+..-+.+++...+. ...-....|..+...|...|+.++|...|++..+.. +.+...|+.+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~-------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg 105 (296)
T PRK11189 40 LQQEVILARLNQILASRDL-------------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLG 105 (296)
T ss_pred hHHHHHHHHHHHHHccccC-------------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 4556677777777653321 001135668888889999999999999999998875 44678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011081 290 AVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVD 369 (494)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (494)
..+...|++++|...|+...+.. +-+..+|..+..++...|++++|.+.|++..+.. |+..........+...++.+
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~ 182 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPK 182 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHH
Confidence 99999999999999999998864 3357788889999999999999999999998764 43322222223345678899
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP-----TEKSYMFLIKGLCEEGKMEEALK 444 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~ 444 (494)
+|...|+...... .|+... ..+.. ...|+..++ +.+..........+ ....|..+...+.+.|++++|..
T Consensus 183 ~A~~~l~~~~~~~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 183 QAKENLKQRYEKL-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHHHhhC-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999997765442 333222 22332 234554443 23332222111111 23578889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHH
Q 011081 445 VQAEMVGKGFEPSLEIYSA 463 (494)
Q Consensus 445 ~~~~m~~~~~~p~~~~~~~ 463 (494)
.|++..+.. .||-.-+..
T Consensus 258 ~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 258 LFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHHHHHhC-CchHHHHHH
Confidence 999999764 345444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-06 Score=83.62 Aligned_cols=306 Identities=13% Similarity=0.050 Sum_probs=183.9
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCC-CcChHh-HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGL-SVKVST-CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
..+..+...+...|+ .+.+...+....+... .++... .......+...|++++|.+.+++..+..|.
T Consensus 7 ~a~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-------- 75 (355)
T cd05804 7 LGHAAAALLLLLGGE---RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-------- 75 (355)
T ss_pred HHHHHHHHHHHhcCC---cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------
Confidence 344444555555666 6665555555444222 223221 222233456779999999999998776543
Q ss_pred cccccccccCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 237 VKRVVRVRPNVHTFNALMVGFYR----EGAFEKVEDVWVEMARLGCEPDC-YSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 237 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
+...+.. ...+.. .+..+.+.+.+.. .....|+. .....+...+...|++++|.+.+++..+.
T Consensus 76 ---------~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 76 ---------DLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred ---------cHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445543 223333 3445555555544 11223333 34445667888999999999999999887
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh
Q 011081 312 NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV-ESSS--VTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-EPEG 387 (494)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~ 387 (494)
. +.+...+..+...|...|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..
T Consensus 144 ~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~ 222 (355)
T cd05804 144 N-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPA 222 (355)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChH
Confidence 5 44577888899999999999999999999876531 1232 3455788889999999999999999865432 1122
Q ss_pred hhH-H--HHHHHHHhcCCHHHHHHH--HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC-
Q 011081 388 STI-E--VLIGELCDKRRVFEALDI--LKARVVKF-GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFE---PS- 457 (494)
Q Consensus 388 ~~~-~--~li~~~~~~~~~~~a~~~--~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~- 457 (494)
... + .++..+...|....+.+. +....... ..............++...|+.++|.++++.+...... -.
T Consensus 223 ~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 302 (355)
T cd05804 223 LDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ 302 (355)
T ss_pred HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh
Confidence 111 1 223333444433333222 11111111 00111122235667788899999999999998764222 01
Q ss_pred --HHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcc
Q 011081 458 --LEIYSAFID--GYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 458 --~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
..+-..++. ++...|++++|.+.+.......
T Consensus 303 ~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 303 PARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 112222333 4568899999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-08 Score=94.12 Aligned_cols=240 Identities=17% Similarity=0.201 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhC-----CC-CcChHh-HHHHHHHHHcCCChhHHHHHHHHHhcCCccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSR-----GL-SVKVST-CNALIWEVSRGKGVISGYEIYREVFGLDSDATA 231 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 231 (494)
.++..+...|...|+ ++.|+.+++...+. |. .|.+.+ .+.+...|...+++++|..+|++++....
T Consensus 200 ~~~~~La~~y~~~g~---~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e---- 272 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGR---LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE---- 272 (508)
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----
Confidence 455568899999999 99999999987764 22 233333 44577788999999999999999865321
Q ss_pred cccccccccccc--ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CC-CcCH-hHHHHHHHHHHhcCCHHHHH
Q 011081 232 GIGKDVKRVVRV--RPNVHTFNALMVGFYREGAFEKVEDVWVEMARL-----GC-EPDC-YSYSVLMAVFCEERRMREAE 302 (494)
Q Consensus 232 ~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~-~~~~~li~~~~~~g~~~~a~ 302 (494)
..+|. +--..+++.|...|.+.|++++|..++++..+. |. .|.+ ..++.+...|+..+++++|.
T Consensus 273 -------~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 273 -------EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK 345 (508)
T ss_pred -------HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH
Confidence 11221 224677888889999999999998888876542 21 1222 23566777788889999988
Q ss_pred HHHHHHHhC---CCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCH
Q 011081 303 KLWEEMRDK---NVEH----DVVAYNTIIGGFCEIGEMARAEEFFREMGLS-----G--VESSSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 303 ~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~~~~~~~~~li~~~~~~g~~ 368 (494)
.+++...+. -+.+ -..+|+.|...|.+.|++++|.++|++.... | ..-.-..++.|...|.+.+++
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~ 425 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY 425 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence 888765432 1111 2356888888888888888888888876543 1 111234567777778888888
Q ss_pred HHHHHHHHHHHH----CCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 369 DSAILVYNDMCR----KGF-EP-EGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 369 ~~a~~~~~~m~~----~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
++|.++|.+... .|. .| ...+|..|...|...|++++|.++.+.
T Consensus 426 ~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 426 EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 878777776433 121 11 234566666666666777666666553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-07 Score=76.25 Aligned_cols=208 Identities=15% Similarity=0.054 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF 327 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (494)
.+...|.-+|.+.|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+-|+...... +-+..+.|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 445667789999999999999999999875 4456788999999999999999999999988874 45778899999999
Q ss_pred HccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSG-VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEA 406 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 406 (494)
|..|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++.++.+. -...+...+.......|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 99999999999999988752 222346788888888899999999999999988753 3456677888888899999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 407 LDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYS 462 (494)
Q Consensus 407 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (494)
..+++. ....+ .++..+...-|..--+.|+-+.+-++=.++.+. -|...-|.
T Consensus 193 r~~~~~-~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 193 RLYLER-YQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHH-HHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 988873 43333 388888888888888899998888887777654 45544443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-07 Score=76.87 Aligned_cols=193 Identities=12% Similarity=0.040 Sum_probs=151.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 278 (494)
...|.-.|...|+...|.+-+++.++.+|. +..+|..+...|.+.|+.+.|.+.|++.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-----------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~- 99 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-----------------YYLAHLVRAHYYQKLGENDLADESYRKALSLA- 99 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-
Confidence 445667788889999999999998887765 77888888889999999999999998887764
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN-VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEH 357 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 357 (494)
+-+..+.|.....+|..|++++|...|++....- ..--..+|..+.-+..+.|+++.|.+.|++..+.. +-...+.-.
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~ 178 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLE 178 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHH
Confidence 3456677888888888999999999998887642 12235578888888888999999999999888765 444566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 358 LVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
+.....+.|++-.|...++.....+. ++..+.-..|..--..|+.+.+-++=.
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 88888888999999988888877764 777777777777777888777766533
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-06 Score=78.33 Aligned_cols=273 Identities=9% Similarity=0.045 Sum_probs=204.4
Q ss_pred cCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccc
Q 011081 154 CGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGI 233 (494)
Q Consensus 154 ~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (494)
...+......+.+++...|+ .++|+..|+.....++. ++.......-.+.+.|+.++...+...++....
T Consensus 228 lr~NvhLl~~lak~~~~~Gd---n~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~------ 297 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGD---YFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK------ 297 (564)
T ss_pred CCccHHHHHHHhhhhhhhcC---chHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh------
Confidence 44566778888899999999 99999999988764322 223333334455778888888888888766432
Q ss_pred ccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011081 234 GKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV 313 (494)
Q Consensus 234 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 313 (494)
-+...|-.-........+++.|+.+-++.++.. +.+...|-.-...+...|+.++|.-.|...+...
T Consensus 298 -----------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 298 -----------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred -----------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 255666666677778889999999999888764 3455566666678888999999999999988763
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCC-hhhH
Q 011081 314 EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV-NGYCR-AGDVDSAILVYNDMCRKGFEPE-GSTI 390 (494)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~~~ 390 (494)
+.+...|.-|+.+|...|++.+|..+-+..... ++.+..+.+.+. ..|.- -.--++|.++++.-++. .|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 457889999999999999999988776665443 234455555442 22222 22347899999887765 454 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 391 EVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 391 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
+.+...+...|..+.++.++++.+.. .||....+.|.+.+...+.+++|+..|...++. .|+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Ccc
Confidence 77778888999999999999987765 489999999999999999999999999998854 554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-05 Score=77.76 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHH
Q 011081 107 SYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRM 186 (494)
Q Consensus 107 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~ 186 (494)
.|-.-+..+.+.+++..-+..|+.++..-.... ...+|...++-....+- ++.++.++++
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq-----------------H~rIW~lyl~Fv~~~~l---Pets~rvyrR 163 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ-----------------HDRIWDLYLKFVESHGL---PETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh-----------------hccchHHHHHHHHhCCC---hHHHHHHHHH
Confidence 444445555555655555555555544221111 12344444444444444 5566666666
Q ss_pred HHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccc-cc---------------------ccc----ccccc
Q 011081 187 LMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT-AG---------------------IGK----DVKRV 240 (494)
Q Consensus 187 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~---------------------~~~----~~~~~ 240 (494)
.++. ++..-+-.+.-+++.+++++|.+.+...+..+.... .| ... -.+..
T Consensus 164 YLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 164 YLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 6542 233344555555666666666666555543321100 00 000 01111
Q ss_pred cccccC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 241 VRVRPN--VHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 241 ~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
.+.-+| ...|++|.+-|.+.|.+++|.++|++....
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 222334 356999999999999999999999987654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.3e-06 Score=77.68 Aligned_cols=261 Identities=12% Similarity=0.035 Sum_probs=159.9
Q ss_pred HHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHH----cCCChhHHHHHHHHHhcCCcccccccccccccccc
Q 011081 167 CCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVS----RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVR 242 (494)
Q Consensus 167 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
.+...|+ +++|.+.+++..+.... +...+.. ...+. ..+....+.+.+.....
T Consensus 52 ~~~~~g~---~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~------------------ 108 (355)
T cd05804 52 SAWIAGD---LPKALALLEQLLDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP------------------ 108 (355)
T ss_pred HHHHcCC---HHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhccCc------------------
Confidence 4556778 99999999998876432 4444442 22222 23444555555443211
Q ss_pred ccc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--h
Q 011081 243 VRP-NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV-EHDV--V 318 (494)
Q Consensus 243 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~ 318 (494)
..| .......+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..+++....... .++. .
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 133 34455566778899999999999999999875 44567788899999999999999999998876532 1222 3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCCC--CChhhH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGV-ESSSVTF-E--HLVNGYCRAGDVDSAILV--YNDMCRKGFE--PEGSTI 390 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~~~~--p~~~~~ 390 (494)
.|..+...+...|++++|..+|++...... .+..... + .++.-+...|..+.+.++ .......... ......
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 267 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHH
Confidence 466788899999999999999999864321 1222111 1 233334444543333333 1111111111 111222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 391 EVLIGELCDKRRVFEALDILKARVVKFGLF------P--TEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 391 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.....++...|+.++|...+... ...... . .....-....++...|+.++|.+.+......
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l-~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAAL-KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHH-HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 24566778899999999998843 321111 0 1112222233456889999999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-05 Score=71.57 Aligned_cols=374 Identities=12% Similarity=0.055 Sum_probs=209.9
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhh-hcC---
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYR-ECG--- 155 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--- 155 (494)
...++.+.|+..+..+.... .++...+..+.-..--.|.+.+|..+-....+.+ +...++--.+ +.+
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~p-------L~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTP-------LCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCCh-------HHHHHHHHHHHHhCcHH
Confidence 34578889999888876544 3444555544444444577777777655433321 1111111000 011
Q ss_pred ----------CC-hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHH-HHHHcCCChhHHHHHHHHHh
Q 011081 156 ----------SA-PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALI-WEVSRGKGVISGYEIYREVF 223 (494)
Q Consensus 156 ----------~~-~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~ 223 (494)
.. ..-....---|.+.. +++|++++.+....+ |+-...|.-+ -+|.+..-++-+.++++.-+
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~H----YQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMH----YQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHH----HHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 10 111112222344443 889999998887643 3444445433 35667777788888777765
Q ss_pred cCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-------------------------
Q 011081 224 GLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC------------------------- 278 (494)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------------- 278 (494)
..-++ +..+-|.......+.=+-..|++-..++.+.+-
T Consensus 213 ~q~pd-----------------StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALq 275 (557)
T KOG3785|consen 213 RQFPD-----------------STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQ 275 (557)
T ss_pred HhCCC-----------------cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHH
Confidence 54332 455555554444443222222222222222110
Q ss_pred -CcC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-----HHccCCHHHHHHHHHHHHhCC
Q 011081 279 -EPD-----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG-----FCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 279 -~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~ 347 (494)
-|. ...--.|+--|.+.++..+|..+.+++.-. .|-......+..+ ........-|.+.|+-.-+++
T Consensus 276 VLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 276 VLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred hchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 010 011223444577788888887766655421 2222222222221 111223455666676665555
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 348 VESSSVT-FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSY 426 (494)
Q Consensus 348 ~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 426 (494)
..-|... -.++...+.-..++++.+..++.....=.. |...-..+.++.+..|.+.+|.++|- .+....+ .|..+|
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~-~is~~~i-kn~~~Y 430 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFI-RISGPEI-KNKILY 430 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHh-hhcChhh-hhhHHH
Confidence 4444322 344555556666788888888887665333 33334457788999999999999986 3333222 355566
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHccccccC
Q 011081 427 M-FLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFI-DGYMKEGNVEMATMLRKEMFENQVRQED 493 (494)
Q Consensus 427 ~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~pd~ 493 (494)
. .|.++|.+++..+.|++++-.+ .-+-+..+.-.+| .-|.+.+.+--|-+.|+++...+|.|..
T Consensus 431 ~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 431 KSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 5 4567889999999998887666 3333455555554 4688889999999999999999998865
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.4e-05 Score=72.90 Aligned_cols=225 Identities=14% Similarity=0.123 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV-VAYNTII 324 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li 324 (494)
+...|...++.--..|-++....+|+++.+..+.-.... ......+-...-++++.++|++-+..=-.|++ ..|+..+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 455566667766677889999999999988764422222 22222344556678888888776554323443 4677777
Q ss_pred HHHHc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHH
Q 011081 325 GGFCE---IGEMARAEEFFREMGLSGVESSSVTFEHLVN--GYCRAGDVDSAILVYNDMCRKGFEPE--GSTIEVLIGEL 397 (494)
Q Consensus 325 ~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 397 (494)
.-+.+ ..+++.|..+|++.++ |.+|...-+.-|+. .--+.|-...|+.++++... ++++. ...||..|.-.
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 66654 3468999999999998 55654433322222 22345888889999999754 34443 34678877666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMF---LIKGLCEEGKMEEALKVQAEMVGK-GFEPSLEIYSAFIDGYMKEGN 473 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~ 473 (494)
...=.+.....+|++.++. -|+...-.. ....=++.|.++.|..++..-.+- .-..+..-|.+.=.-=.++|+
T Consensus 633 ae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 6555555666777766655 356544332 334456789999999999887654 223356778888777889998
Q ss_pred HHH
Q 011081 474 VEM 476 (494)
Q Consensus 474 ~~~ 476 (494)
-+-
T Consensus 710 edT 712 (835)
T KOG2047|consen 710 EDT 712 (835)
T ss_pred HHH
Confidence 443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.6e-05 Score=71.98 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011081 333 MARAEEFFREMGLS-GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEALDIL 410 (494)
Q Consensus 333 ~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 410 (494)
.+.....++++... .+.|+ .+|...+..-.+..-++.|..+|.+..+.+..+ ++.+.++++..+| .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 55566666666554 33343 567778888888888999999999999988777 7778888888776 67888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 411 KARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS--LEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
+--+++.|-. ..-....++-+...++-..|..+|++.+..++.|| ..+|..+|.-=..-|+...+.++-+++...
T Consensus 425 eLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9888887643 34446788888999999999999999999877766 689999999999999999999998887664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-07 Score=82.73 Aligned_cols=228 Identities=14% Similarity=0.086 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE-HDVVAYNTII 324 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li 324 (494)
+......+.+++...|+++.++ .+..... .|.......+...+...++-+.+..-+++....+.. .+........
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 4555566778888888876544 4443333 666666655554444434555555555444333322 2333333334
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD----K 400 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 400 (494)
..+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCc
Confidence 5667789999998887542 355666778888999999999999999997653 33444445444433 3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNV-EMATM 479 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~ 479 (494)
+.+.+|..+|++... ...++..+.+.+..++...|++++|.+++.+..+.. +-+..+...+|-+....|+. +.+.+
T Consensus 181 e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred hhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 468899999986433 345788888888889999999999999999887653 33567777788877888877 67778
Q ss_pred HHHHHHHccc
Q 011081 480 LRKEMFENQV 489 (494)
Q Consensus 480 ~~~~m~~~~~ 489 (494)
++.++....+
T Consensus 258 ~l~qL~~~~p 267 (290)
T PF04733_consen 258 YLSQLKQSNP 267 (290)
T ss_dssp HHHHCHHHTT
T ss_pred HHHHHHHhCC
Confidence 8888876544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.3e-09 Score=60.24 Aligned_cols=32 Identities=50% Similarity=0.906 Sum_probs=14.3
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 312 NVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
|+.||..+||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00011 Score=74.43 Aligned_cols=319 Identities=14% Similarity=0.170 Sum_probs=190.0
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCC-CCCChHHHHHHHHHHhhhcCCChh-h-------H--HHHHHHHHhc
Q 011081 103 HSLSSYATIIHILSRARLIGPARDVIRVALRSP-ENDPKLKLFEVLVKTYRECGSAPF-V-------F--DLLIKCCLEV 171 (494)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-~-------~--~~li~~~~~~ 171 (494)
.|+..-+..+.++..++...+.+++++.++-.+ .+.....+-+-++-.--+..++.+ - | ..+...+..+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 355666677888888888888889888876543 233333333333322222222111 0 1 1233444455
Q ss_pred CChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHH
Q 011081 172 KNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFN 251 (494)
Q Consensus 172 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 251 (494)
+- +++|+.+|+.. ..+..+.+.|+.- -+..++|.+.-++.- ....|.
T Consensus 1062 ~L---yEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n----------------------~p~vWs 1108 (1666)
T KOG0985|consen 1062 QL---YEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCN----------------------EPAVWS 1108 (1666)
T ss_pred hH---HHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhC----------------------ChHHHH
Confidence 55 78888888754 2355555555543 345667766655541 356789
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
.+..+-.+.|...+|++-|-+. -|...|..+++...+.|.|++-.+++...++..-+|.+. +.||-+|++.+
T Consensus 1109 qlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhc
Confidence 9999999999999998877443 367789999999999999999999888887776555544 57888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 332 EMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 332 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
+..+.++++ .-|+......+.+-|...|.++.|.-+|... .-|..|...+...|++..|.+.-+
T Consensus 1181 rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1181 RLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 887766554 2567777777777777777777776666543 223444444445555554444322
Q ss_pred H-----------------------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 011081 412 A-----------------------RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDG 467 (494)
Q Consensus 412 ~-----------------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~ 467 (494)
+ .|-..++-....-..-++..|-..|-+++.+.+++..+ |+.. -...|+.|.-.
T Consensus 1245 KAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1245 KANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAIL 1322 (1666)
T ss_pred hccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHH
Confidence 1 01111112222334455556666666666666555544 3322 23345555555
Q ss_pred HHhcCCHHHHHHHH
Q 011081 468 YMKEGNVEMATMLR 481 (494)
Q Consensus 468 ~~~~g~~~~a~~~~ 481 (494)
|.+- +.++.++-+
T Consensus 1323 Ysky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHL 1335 (1666)
T ss_pred HHhc-CHHHHHHHH
Confidence 5443 233433333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-08 Score=59.67 Aligned_cols=32 Identities=28% Similarity=0.619 Sum_probs=24.0
Q ss_pred ccccCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011081 242 RVRPNVHTFNALMVGFYREGAFEKVEDVWVEM 273 (494)
Q Consensus 242 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (494)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 46777777777777777777777777777776
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-06 Score=88.32 Aligned_cols=234 Identities=7% Similarity=0.017 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCc---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEP---DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYN 321 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 321 (494)
....|-..|....+.++.++|.++.++.+.. ++.- -...|.++++.-.-.|.-+...++|+++.+. ...-.+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3455777777777777777777777776543 1111 1235666666666666667777777777765 22345677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhc
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDK 400 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 400 (494)
.|...|.+.+++++|.++|+.|.++= .-....|...+..+.+..+-+.|..++.+.++.=.+- ........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 77777777777777777777777652 2455677777777777777777777777776642111 223344445555667
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS--LEIYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~ 478 (494)
|+.+.+..+|+..+..+.- ....|+.+|+.=.++|+.+.+..+|++.+..++.|- -..|...+..=-.+|+-+.+.
T Consensus 1614 GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 7777777777766655432 344577777777777777777777777777766654 345666666555666655555
Q ss_pred HHHHHH
Q 011081 479 MLRKEM 484 (494)
Q Consensus 479 ~~~~~m 484 (494)
.+=.+.
T Consensus 1692 ~VKarA 1697 (1710)
T KOG1070|consen 1692 YVKARA 1697 (1710)
T ss_pred HHHHHH
Confidence 544333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00018 Score=69.62 Aligned_cols=285 Identities=13% Similarity=0.129 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHH--
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALM-- 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li-- 254 (494)
++...+....+.+.... ....|..+..++.-.|+...|..+.++..+... ..|+...+....
T Consensus 125 ~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~---------------~~~s~~~~e~se~~ 188 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN---------------TSPSKEDYEHSELL 188 (700)
T ss_pred hhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------cCCCHHHHHHHHHH
Confidence 55555555444443221 334566666666666777777777776654321 134444433222
Q ss_pred ----HHHHhcCCHhHHHHHHHHHHHcCCCcCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH-HHHH
Q 011081 255 ----VGFYREGAFEKVEDVWVEMARLGCEPDCYSY-SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII-GGFC 328 (494)
Q Consensus 255 ----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~ 328 (494)
....+.|.+++|.+.+..-... ..|...+ ..-...+.+.+++++|..+|..++.. .||..-|+-.. .++.
T Consensus 189 Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 189 LYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHH
Confidence 3344566666666666544322 2232222 34455677788888888888888877 45555554443 3443
Q ss_pred ccCCHHHHH-HHHHHHHhC---CCCCCH----------------------------HHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 329 EIGEMARAE-EFFREMGLS---GVESSS----------------------------VTFEHLVNGYCRAGDVDSAILVYN 376 (494)
Q Consensus 329 ~~g~~~~A~-~~~~~m~~~---~~~~~~----------------------------~~~~~li~~~~~~g~~~~a~~~~~ 376 (494)
+-.+.-+++ .+|....+. .-.|-. .++..+...|-. .+++- +++
T Consensus 265 k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k~~-~le 340 (700)
T KOG1156|consen 265 KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEKVA-FLE 340 (700)
T ss_pred HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhHhH-HHH
Confidence 333333333 444444322 001100 011111111111 11111 222
Q ss_pred HHHH------CCC------------CCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh
Q 011081 377 DMCR------KGF------------EPEGS--TIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEK-SYMFLIKGLCE 435 (494)
Q Consensus 377 ~m~~------~~~------------~p~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~ 435 (494)
++.. .|. +|... ++..++..+-..|+++.|..+++..+.. .|+.. -|-.=.+.+..
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH 417 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKH 417 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHh
Confidence 2211 011 23322 3334556666677777777777654433 24432 34444456666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 436 EGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.|++++|..++++..+.. .+|..+-..-..-..+..+.++|.+++......|.
T Consensus 418 ~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 418 AGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 777777777777776543 44554444455555666777777777766666553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00011 Score=79.55 Aligned_cols=309 Identities=9% Similarity=-0.056 Sum_probs=194.3
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHhCCC------CcCh--HhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccc
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMSRGL------SVKV--STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGK 235 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~~g~------~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (494)
....+...|+ ++++...+....+.-- .+.. .....+...+...|+++.|...+++.....+.
T Consensus 415 ~a~~~~~~g~---~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~------- 484 (903)
T PRK04841 415 QAWLAQSQHR---YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL------- 484 (903)
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------
Confidence 3444556677 8888888877654211 1111 11222334456788999999999887653221
Q ss_pred ccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---Cc--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 236 DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC---EP--DCYSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 236 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
.....-...++.+...+...|++++|...+.+.....- .+ ...++..+...+...|+++.|...+++...
T Consensus 485 -----~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 485 -----TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred -----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00000123456677778889999999999988865311 11 123455667778889999999999887654
Q ss_pred ----CCCC--C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 311 ----KNVE--H-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSG--VES--SSVTFEHLVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 311 ----~g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 379 (494)
.|.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.++...
T Consensus 560 ~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 560 LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2211 1 23345566677788899999999998875531 112 23344556667888999999999998875
Q ss_pred HCCCCC-ChhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 380 RKGFEP-EGSTI-----EVLIGELCDKRRVFEALDILKARVVKFGLFPT---EKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 380 ~~~~~p-~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
...-.. ....+ ...+..+...|+.+.|.+.+...... ..... ...+..+..++...|+.++|..++++..
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 640 NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 421110 11111 11224445688999998887643221 11111 1113456677888999999999999887
Q ss_pred hC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 011081 451 GK----GFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 451 ~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
.. |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 719 ~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 719 ENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 53 33322 3456666778889999999999999988754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-05 Score=83.76 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=170.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC---CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDK-NVE---HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
....|-..|......+++++|+++.++.+.. ++. --...|.++++.-..-|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567888888999999999999999998754 111 124568888888778888889999999998753 2346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEE 436 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 436 (494)
.|...|.+.+.+++|.++|+.|.+. +......|...+..+.++++-+.|..++.+.++...-.-......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999986 335778899999999999999999999998887653323344555666677789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 437 GKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
|+.+++..+|+..+.. .+-....|+.+|+.-.++|+.+.++.+|++.+..+..|
T Consensus 1614 GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999875 34467899999999999999999999999999988765
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-05 Score=73.07 Aligned_cols=201 Identities=9% Similarity=0.027 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCC-ChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGK-GVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV 255 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 255 (494)
.++|+.+...+++.... +..+|+....++...| .+++++..++++...++. +..+|+....
T Consensus 53 serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-----------------nyqaW~~R~~ 114 (320)
T PLN02789 53 SPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-----------------NYQIWHHRRW 114 (320)
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-----------------chHHhHHHHH
Confidence 77888888888775433 4455666666666666 568888888888776543 6667776655
Q ss_pred HHHhcCCH--hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc---
Q 011081 256 GFYREGAF--EKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI--- 330 (494)
Q Consensus 256 ~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--- 330 (494)
.+.+.|+. ++++.+++++.+.. +-|..+|+...-++.+.|+++++++.++++++.+ ..|..+|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccc
Confidence 55566653 56777887877765 4467778877778888888888888888888775 34666777766665544
Q ss_pred CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 011081 331 GEM----ARAEEFFREMGLSGVESSSVTFEHLVNGYCRA----GDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD 399 (494)
Q Consensus 331 g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 399 (494)
|.. ++++++..++.... +-|...|+-+...+... ++..+|...+.+..+.+ ..+...+..|+..|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 222 45666665666553 55667777777766662 33455777776665543 2244555666666653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-05 Score=71.39 Aligned_cols=233 Identities=10% Similarity=0.056 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER-RMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
.++..+-..+...++.++|+.+..++++.. +-+..+|+.--..+.+.| ++++++..++.+.+.. +.+..+|+.-...
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 445555566667788999999999998764 334456666666666777 6799999999998775 4466678766666
Q ss_pred HHccCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---C
Q 011081 327 FCEIGEM--ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK---R 401 (494)
Q Consensus 327 ~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~ 401 (494)
+.+.|+. ++++.+++++.+.+ +-+..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 6666653 67889998998876 678889999999999999999999999999998744 566776666555544 2
Q ss_pred CH----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 011081 402 RV----FEALDILKARVVKFGLFPTEKSYMFLIKGLCEE----GKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG- 472 (494)
Q Consensus 402 ~~----~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 472 (494)
.. ++.+++..+.+... +-|...|+-+...+... ++..+|.+.+.+..+.+ ..+......|++.|+...
T Consensus 194 ~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~ 270 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQ 270 (320)
T ss_pred cccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhc
Confidence 22 45666666566554 23455677676666662 44567888888877543 336777888888887642
Q ss_pred -----------------CHHHHHHHHHHHHHc
Q 011081 473 -----------------NVEMATMLRKEMFEN 487 (494)
Q Consensus 473 -----------------~~~~a~~~~~~m~~~ 487 (494)
..++|.++++.+.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 302 (320)
T PLN02789 271 PTAEFRDTVDTLAEELSDSTLAQAVCSELEVA 302 (320)
T ss_pred cchhhhhhhhccccccccHHHHHHHHHHHHhh
Confidence 346788888888443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-05 Score=78.92 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (494)
.|.-+|.+|+..|+..+|..+..+..++ +||...|..+.+......-+++|.++.+..-.. +-..+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 3455555555555555555555555442 455555555555544444455555554433221 0011111111
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALD 408 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 408 (494)
+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.|..-..-. +-+...||.+-.+|.+.++-.+|..
T Consensus 497 ~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred cchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHH
Confidence 2444555555554443332 2333444444444444555555555554443321 1123345555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 409 ILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 409 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
.+.+.++-. .-+...|...+....+.|.+++|++.+.++.
T Consensus 575 ~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 575 KLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 554433322 1122233333444444555555555555444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.1e-05 Score=67.38 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHH
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSA-FIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~ 483 (494)
.+..+++..|.+.+|.++|-+.....++ |..+|.+ |.++|.+.|+.+.|..++-+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 3667888889999999999888754444 4555654 55688999999888877544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-06 Score=79.02 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=109.2
Q ss_pred HhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHH
Q 011081 169 LEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVH 248 (494)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (494)
.++|+ +.+|.-.|+..++..+. +...|.-|...-...++-..|...+++.++.+|. |..
T Consensus 296 m~nG~---L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-----------------Nle 354 (579)
T KOG1125|consen 296 MKNGD---LSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-----------------NLE 354 (579)
T ss_pred HhcCC---chHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-----------------cHH
Confidence 44555 66666666666554433 5555666665555555555666666666555543 555
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--------cCHhHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHhH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCE--------PDCYSYSVLMAVFCEERRMREAEKLWEEM-RDKNVEHDVVA 319 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~~~~~~ 319 (494)
..-+|.-.|...|.-.+|+..++..+....+ ++...-.. ..+.....+....++|-++ .+.+..+|..+
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 5556666666666666666666555433200 00000000 0111111222333333333 33333355555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE-GSTIEVLIGELC 398 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~ 398 (494)
+..|.-.|.-.|++++|.+.|+..+... +-|...||-|...++...+.++|+..|.+.++. +|. +.+...|.-.|.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCM 509 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhh
Confidence 5555555556666666666666655543 345555666666666666666666666665553 332 122233333455
Q ss_pred hcCCHHHHHHHHHH
Q 011081 399 DKRRVFEALDILKA 412 (494)
Q Consensus 399 ~~~~~~~a~~~~~~ 412 (494)
..|.+++|.+.|-.
T Consensus 510 NlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhHHHHHHHHHH
Confidence 55666665555543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.6e-06 Score=73.17 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=129.8
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC-HHH
Q 011081 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD---VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVE-SS-SVT 354 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~-~~~ 354 (494)
.....+..+...+.+.|++++|...|+++.... +.+ ..++..+..+|.+.|++++|...|+++.+..-. +. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 355677888888999999999999999987763 112 246778889999999999999999999876311 11 124
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH
Q 011081 355 FEHLVNGYCRA--------GDVDSAILVYNDMCRKGFEPEGS-TIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS 425 (494)
Q Consensus 355 ~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 425 (494)
+..+..++... |+.++|.+.|+.+.+.. |+.. .+..+... .. ... ... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~-------~~~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN-------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH-------HHH--------HH
Confidence 55555556554 67888999999888763 3332 22111111 00 000 000 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 426 YMFLIKGLCEEGKMEEALKVQAEMVGKGF-EP-SLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
...+...+.+.|++++|...+.+..+..- .| ....+..+..++.+.|++++|..+++.+..+.+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12456678899999999999999987511 12 357888999999999999999999998877653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-05 Score=69.53 Aligned_cols=313 Identities=15% Similarity=0.116 Sum_probs=159.5
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccc----------
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT---------- 230 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------- 230 (494)
|.+++..+.+..+ ++.|++++..-.+...+ +......|..+|....++..|.+.|+++...-|...
T Consensus 13 ftaviy~lI~d~r---y~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDAR---YADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhh---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3334444444445 66666666555554322 445555566666666666666666666643322100
Q ss_pred --ccccccccccccc-ccCHHHHHHHH--HH--HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHH
Q 011081 231 --AGIGKDVKRVVRV-RPNVHTFNALM--VG--FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEK 303 (494)
Q Consensus 231 --~~~~~~~~~~~~~-~p~~~~~~~li--~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 303 (494)
.++..++-++... .-+....+..+ .+ ....+++..+..++++....| +..+.+.......+.|+++.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 0000000000000 00011111111 11 112344444444444443222 33444444445567888888888
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---------------------HHHHHH---
Q 011081 304 LWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSV---------------------TFEHLV--- 359 (494)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---------------------~~~~li--- 359 (494)
-|+...+.+--.....||.-+..| +.|+++.|+++..++.++|++-.+. .-+.++
T Consensus 166 kFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 888887654334556676655444 5678888888888888888653210 112233
Q ss_pred ----HHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 360 ----NGYCRAGDVDSAILVYNDMCRKG-FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLC 434 (494)
Q Consensus 360 ----~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 434 (494)
..+.+.|+++.|.+.+-+|.-+. -..|.+|...+.-.-. .+++.+..+-+.-.+.... -...||..++-.||
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP--fP~ETFANlLllyC 321 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP--FPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC--CChHHHHHHHHHHh
Confidence 33456678888888777775422 2446666655543222 2334444444332233322 23467888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 011081 435 EEGKMEEALKVQAEMVGKGFE-PSLEIYSAFIDGYMKE-GNVEMATMLRKEMF 485 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~ 485 (494)
++.-++.|-.++.+--..-++ .+...|+ |++++.-. -..++|.+-++.+.
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888877654322111 1233333 44444333 45667766655543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00014 Score=64.99 Aligned_cols=193 Identities=10% Similarity=0.103 Sum_probs=104.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 292 FCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSA 371 (494)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 371 (494)
+...|+...|+.....+++.. +-+...|..-..+|...|++..|+.=++...+.. .-++.++-.+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 444566666666666666542 3355556666666666666666665555544433 23344444555555666666666
Q ss_pred HHHHHHHHHCCCCCChhhHH----H---H------HHHHHhcCCHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc
Q 011081 372 ILVYNDMCRKGFEPEGSTIE----V---L------IGELCDKRRVFEALDILKARVVKFGLFP--TEKSYMFLIKGLCEE 436 (494)
Q Consensus 372 ~~~~~~m~~~~~~p~~~~~~----~---l------i~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~ 436 (494)
+...++-++.+ ||....- . + +......+++.++++..+..|+...-.+ ....+..+-.++...
T Consensus 243 L~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 243 LKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 66666655542 3322110 0 0 1223345566666666655554322111 111233344455556
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 437 GKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
|++.+|++...+.++ +.|| ..++.--..+|.-...+++|+.-|+...+.+..
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 677777777777763 3454 666666666777777777777777766665443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00027 Score=67.69 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--
Q 011081 389 TIEVLIGELCDKRRVFEALDILKAR-------VVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK--GFEPS-- 457 (494)
Q Consensus 389 ~~~~li~~~~~~~~~~~a~~~~~~~-------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~-- 457 (494)
+...++......|+++.|++++... +.+.+..| .+...+...+.+.++.+.|..++.+.++. .-.+.
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 4444556666777777777776611 11222223 23444555555655555555555554431 00111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 458 --LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 458 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
..++.-+...-.+.|+.++|..+++++.+.++
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 22233333334455777777777777766443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.9e-06 Score=77.31 Aligned_cols=208 Identities=11% Similarity=0.043 Sum_probs=150.8
Q ss_pred CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccc
Q 011081 156 SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGK 235 (494)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (494)
....+|-.|...-..+++ -..|+..+++..+.... |..+.-+|.-.|...|.-..|+++++..+...+....-...
T Consensus 317 ~haeAW~~LG~~qaENE~---E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a 392 (579)
T KOG1125|consen 317 QHAEAWQKLGITQAENEN---EQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSA 392 (579)
T ss_pred HHHHHHHHhhhHhhhccc---hHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcccc
Confidence 345677777777778887 88899999998886544 77888888889999999999999998886544321000000
Q ss_pred ccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 236 DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR-LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 236 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 314 (494)
.....++ +. ..+.....+....++|-++.. .+..+|...+..|.-.|--.|++++|...|+..+... +
T Consensus 393 ~~~~~~~--~~--------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-P 461 (579)
T KOG1125|consen 393 GENEDFE--NT--------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-P 461 (579)
T ss_pred Ccccccc--CC--------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-C
Confidence 0000000 00 111222234455666666544 4545788888999999999999999999999998874 4
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 315 HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS-SVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
-|...||-|...++...+.++|+..|++.++. +|+ +.+...|.-.|...|.+++|.+.|-..+.
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 57889999999999999999999999999986 454 34556677789999999999998877654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-06 Score=79.56 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=108.2
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEP-DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT 322 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (494)
.|.......+...+...++-+.++.-+++....+..+ +..........+...|++++|+++++.. .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3444444444433333234444444444433332222 2222222234455567777777766532 25566666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 398 (494)
.+..|.+.++++.|.+.++.|.+.+ .|. +...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 7777777888888888887777643 332 33333333322 23577788888886543 4567777777777777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKM-EEALKVQAEMVGK 452 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 452 (494)
..|++++|.+.+.+.+... +-+..+...++.+....|+. +.+.+++.++...
T Consensus 213 ~~~~~~eAe~~L~~al~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7888888888777655432 22344555566666666666 5666777777643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3e-05 Score=79.89 Aligned_cols=170 Identities=12% Similarity=0.112 Sum_probs=109.8
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHH
Q 011081 103 HSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVD 182 (494)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~ 182 (494)
.+...+..|+..+...+++++|.++.+..++..+.......+..++....+. .+......++.......+ +.....
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~lv~~l~~~~~~~~---~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSNLLNLIDSFSQNLK---WAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhhhhhhhhhcccccc---hhHHHH
Confidence 3456677788888788888888888887777655555566666654322221 111111244444444444 545555
Q ss_pred HHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC
Q 011081 183 IVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA 262 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 262 (494)
+...|.+.+ -+..++-.+..+|-+.|+.++|..+|+++++.++. |..+.|.+...|... +
T Consensus 105 ~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-----------------n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 105 ICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-----------------NPEIVKKLATSYEEE-D 164 (906)
T ss_pred HHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-----------------cHHHHHHHHHHHHHh-h
Confidence 555555533 24556777788888888888888888888777654 777888888888888 8
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
+++|++++.+.... +...+++..+.++|.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888888776653 45555666666666666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.2e-06 Score=72.62 Aligned_cols=188 Identities=12% Similarity=0.008 Sum_probs=133.9
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC----YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV-- 317 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-- 317 (494)
......+..+...+.+.|++++|...|++..... |+. .++..+..++.+.|++++|...++.+.+.......
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 5577888889999999999999999999988763 332 46778889999999999999999999876321111
Q ss_pred hHHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 011081 318 VAYNTIIGGFCEI--------GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST 389 (494)
Q Consensus 318 ~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 389 (494)
.++..+..++.+. |++++|.+.|+.+.... +-+...+..+..... .... .. ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~~--------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------LA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------HH--------HH
Confidence 2455666666654 78899999999998763 222233322221111 0000 00 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 390 IEVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 390 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
...+...+.+.|++.+|+..+...+....-.| ....+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455668899999999999998777654333 3567888999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00016 Score=68.41 Aligned_cols=198 Identities=17% Similarity=0.127 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-------H
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE-------H 357 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-------~ 357 (494)
...+.++..+..+++.|.+-+....+.. -+..-++....+|...|.+.+....-....+.|. -...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 3566777778888888888888887764 4555667777788888888877777666665542 2222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-------------------------HHHHHhcCCHHHHHHHHHH
Q 011081 358 LVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVL-------------------------IGELCDKRRVFEALDILKA 412 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-------------------------i~~~~~~~~~~~a~~~~~~ 412 (494)
+..+|.+.++++.|...|.+.+.....|+...-..- ...+.+.|++..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344666778888888888887665444443321111 1445566777777777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 413 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
+++.. +-|...|....-+|.+.|.+..|++=.+..++. .|+ ...|..=..++....++++|.+.|.+..+.++
T Consensus 384 AIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 384 AIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55543 345566777777777777777777766666544 333 33444444444455667777777777766554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00066 Score=67.14 Aligned_cols=356 Identities=15% Similarity=0.056 Sum_probs=202.8
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCV 181 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~ 181 (494)
.-+...|..+.=++.+.|+++.+.+.|++..... -.....|..+-..+...|. -..|+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------------------~~~~e~w~~~als~saag~---~s~Av 377 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------------------FGEHERWYQLALSYSAAGS---DSKAV 377 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------------------hhhHHHHHHHHHHHHHhcc---chHHH
Confidence 3466677777777777777877777777765411 1123445555555666666 66777
Q ss_pred HHHHHHHhCCCCcChHh-HHHHHHHHH-cCCChhHHHHHHHHHhcCCcc----------cccccc--c------------
Q 011081 182 DIVRMLMSRGLSVKVST-CNALIWEVS-RGKGVISGYEIYREVFGLDSD----------ATAGIG--K------------ 235 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~-~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~----------~~~~~~--~------------ 235 (494)
.+++.-......|+..+ +-..-..|. +.+..+++...-.++.+.... ...|++ .
T Consensus 378 ~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~ 457 (799)
T KOG4162|consen 378 NLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERD 457 (799)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHH
Confidence 77776655433343333 322223333 345566666665555441110 000100 0
Q ss_pred -----------ccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHH
Q 011081 236 -----------DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKL 304 (494)
Q Consensus 236 -----------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 304 (494)
++-...+-.|++..|-++ -|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 011112223444433333 3556677777777777777765456677777777777777777777777
Q ss_pred HHHHHhCCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHH---------------------------------------
Q 011081 305 WEEMRDKNVEHD-VVAYNTIIGGFCEIGEMARAEEFFREMG--------------------------------------- 344 (494)
Q Consensus 305 ~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------------------------------- 344 (494)
.+...+. -++ -.....-+..-...++.++++.....+.
T Consensus 536 vd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 536 VDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 7765543 112 1100000111111222222222111110
Q ss_pred ------------hCC---------CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011081 345 ------------LSG---------VE--SS------SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIG 395 (494)
Q Consensus 345 ------------~~~---------~~--~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 395 (494)
..| +. |+ ...|......+.+.++.++|...+.+..+.. ......|.....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGL 692 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhH
Confidence 000 00 01 1123344556666677777777666665542 234455555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 396 ELCDKRRVFEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALK--VQAEMVGKGFEPSLEIYSAFIDGYMKEG 472 (494)
Q Consensus 396 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g 472 (494)
.+...|..++|.+.|...+.- .|+ +.+..++..++.+.|+..-|.. ++..+.+.+ +-+...|..+...+.+.|
T Consensus 693 ~~~~~~~~~EA~~af~~Al~l---dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALAL---DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 677788999999988755533 344 4467888899999998777777 899998764 446899999999999999
Q ss_pred CHHHHHHHHHHHHHcc
Q 011081 473 NVEMATMLRKEMFENQ 488 (494)
Q Consensus 473 ~~~~a~~~~~~m~~~~ 488 (494)
+.+.|.+.|....+..
T Consensus 769 d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLE 784 (799)
T ss_pred chHHHHHHHHHHHhhc
Confidence 9999999998877654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00011 Score=64.18 Aligned_cols=314 Identities=15% Similarity=0.144 Sum_probs=191.6
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHH
Q 011081 108 YATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRML 187 (494)
Q Consensus 108 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m 187 (494)
|.+++-.+.+..+++.|++++....++. ..+....+.|..+|-+..+ +..|-+.++++
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-------------------p~~rAgLSlLgyCYY~~Q~---f~~AA~CYeQL 70 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-------------------PRSRAGLSLLGYCYYRLQE---FALAAECYEQL 70 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5666777778888888888887665532 2234456667777777777 88888888877
Q ss_pred HhCCCCcChHhHHH-HHHHHHcCCChhHHHHHHHHHhcCCccccccc-----------cc--ccccccccc---cCHHHH
Q 011081 188 MSRGLSVKVSTCNA-LIWEVSRGKGVISGYEIYREVFGLDSDATAGI-----------GK--DVKRVVRVR---PNVHTF 250 (494)
Q Consensus 188 ~~~g~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~---p~~~~~ 250 (494)
-..- |...-|.. -...+.+.+.+.+|+++...|.+.+.- .... ++ .++....-. -+..+.
T Consensus 71 ~ql~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L-~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~ 147 (459)
T KOG4340|consen 71 GQLH--PELEQYRLYQAQSLYKACIYADALRVAFLLLDNPAL-HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQ 147 (459)
T ss_pred HhhC--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHH-HHHHHHHHHHHhcccccCcchHHHHHhccCCCccchh
Confidence 6533 33322221 123344556677777777666543110 0000 00 000000011 244444
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------C
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARL-GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH-------------D 316 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-------------~ 316 (494)
+...-...+.|++++|.+-|+...+- |..| ...|+..+ +..+.|+++.|++...+++++|+.. |
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD 225 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID 225 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc
Confidence 44445556899999999999998776 4544 56777666 4456789999999999999987521 1
Q ss_pred H---------------hHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 317 V---------------VAYNTIIGGFCEIGEMARAEEFFREMGLS-GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 317 ~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
+ ..+|.-...+.+.|+++.|.+.+-+|.-+ .-..|++|...+.-. -..+++.+..+-+.-+++
T Consensus 226 vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 226 VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ 304 (459)
T ss_pred hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHh
Confidence 1 11333334456889999999999888643 224577777665433 234567777777777777
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 011081 381 KGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLC-EEGKMEEALKVQAEMVG 451 (494)
Q Consensus 381 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 451 (494)
... -...||..++-.||+..-++.|.+++.+.-...-.-.+...|+ +++++. -.-..++|.+-++.+.+
T Consensus 305 ~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 305 QNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred cCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 653 3567899999999999999999998763110000012233333 333333 34567777777766653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-05 Score=77.79 Aligned_cols=208 Identities=11% Similarity=0.085 Sum_probs=149.4
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
..|.-+|-+|...|+ -.+|.++..+..+ -+|++..|..+.+......-+++|.++++...
T Consensus 425 emw~~vi~CY~~lg~---~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s--------------- 484 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQ---HGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS--------------- 484 (777)
T ss_pred HHHHHHHHHHHHhcc---cchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhh---------------
Confidence 346667888888888 7888888877776 46788888888888888777888888887762
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
..+-..+.......++++++.+.|+.-.+.+ +.-..+|..+..+..+.++++.|.+.|....... +-+..
T Consensus 485 --------arA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~e 554 (777)
T KOG1128|consen 485 --------ARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAE 554 (777)
T ss_pred --------HHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchh
Confidence 2222222222334688888888888776654 4456788888888888889998888888877653 33567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-EPEGSTIEVLIGEL 397 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~ 397 (494)
.||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|-.-+....+.|.+++|++.+.++..... .-|..+...++...
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 89999999999999999999988888776 44555666666677888889998888888765211 11444444444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-05 Score=67.00 Aligned_cols=160 Identities=17% Similarity=0.095 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 011081 200 NALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE 279 (494)
Q Consensus 200 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 279 (494)
..+-..+.-.|+-+....+........ ..|....+..+....+.|++.+|...+++..... +
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-----------------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p 131 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-----------------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-P 131 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-----------------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-C
Confidence 344455566666666666666543322 2255666667778888888888888888877654 6
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV 359 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 359 (494)
+|..+|+.+.-+|.+.|+.++|..-|.+..+.. .-+...+|.|...|.-.|+.+.|..++......+ .-|...-..+.
T Consensus 132 ~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLA 209 (257)
T COG5010 132 TDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLA 209 (257)
T ss_pred CChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHH
Confidence 677788888888888888888888887777653 3356667777777777888888888887777664 44666666777
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011081 360 NGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~ 379 (494)
......|++++|..+-..-.
T Consensus 210 l~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHhhcCChHHHHhhccccc
Confidence 77777888888877765543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0006 Score=74.00 Aligned_cols=307 Identities=11% Similarity=-0.031 Sum_probs=185.3
Q ss_pred HHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc--
Q 011081 168 CLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP-- 245 (494)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-- 245 (494)
....|+ +..+.+.++.+.......+..........+...|+++++...+.+......... .+..+
T Consensus 384 l~~~g~---~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~----------~~~~~~~ 450 (903)
T PRK04841 384 LFNQGE---LSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRN----------IELDGTL 450 (903)
T ss_pred HHhcCC---hHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccC----------cccchhH
Confidence 444566 666666655542111111222333445556678899999999887744211000 00011
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC----YSYSVLMAVFCEERRMREAEKLWEEMRDK----NV-EHD 316 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~ 316 (494)
.......+...+...|++++|...+++..+.--..+. ...+.+...+...|++++|...+++.... |- ..-
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 1222233345566899999999999987763111121 23455666778899999999999887642 21 111
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVE--S-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG--FEP-- 385 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p-- 385 (494)
..++..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 235566677888999999999998886542 211 1 22334555666777899999999998876531 112
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSY-----MFLIKGLCEEGKMEEALKVQAEMVGKGFEPS--- 457 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--- 457 (494)
....+..+...+...|+.++|.+.+.....-.........+ ...+..+...|+.+.|.+++...........
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23344445667788999999999887553321111111111 1122445568999999999877654211111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 458 LEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 458 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
...+..+..++...|+.++|..++++....
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112345667788999999999999988764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-05 Score=66.24 Aligned_cols=127 Identities=9% Similarity=0.116 Sum_probs=93.2
Q ss_pred CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHH
Q 011081 209 GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVL 288 (494)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 288 (494)
.++.+++...++..+..+|. |...|..+...|...|++++|...|++..+.. +-+...+..+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-----------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~l 113 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-----------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAAL 113 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 55667777777777666544 78888888888888888888888888887764 3356667777
Q ss_pred HHH-HHhcCC--HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 289 MAV-FCEERR--MREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 289 i~~-~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
..+ +...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|+..|+++.+.. +|+..-+
T Consensus 114 A~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 114 ATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 765 356666 488888888888775 4467778888888888888888888888887764 4554333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=6e-05 Score=77.76 Aligned_cols=180 Identities=8% Similarity=0.100 Sum_probs=110.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE 332 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (494)
++.......++.-+..+...|.+.+ -+...+..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 3333444444444444444554432 234466777778888888888888888887776 55777788888888877 8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 333 MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 333 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
+++|++++.+.... |....++.++.++|.++..... -|...+..+...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~k---------------- 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERK---------------- 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHH----------------
Confidence 88888777776542 5555677777777777776532 122222222221
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 413 RVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYM 469 (494)
Q Consensus 413 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 469 (494)
.....+..--..++-.+-..|-..++++++..+++.+++.. +-|.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 12222222334455556667777788888888888888652 335556666777665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00011 Score=75.07 Aligned_cols=184 Identities=12% Similarity=0.112 Sum_probs=140.1
Q ss_pred hhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccc
Q 011081 152 RECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA 231 (494)
Q Consensus 152 ~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 231 (494)
+++..++.++-.|..+..+.|+ .++|..+++...+.... +......+...+.+.+++++|+..+++.+..+++
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~---~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~--- 152 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHR---SDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS--- 152 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---
Confidence 3455567888889999999999 99999999999986543 5677788889999999999999999999888765
Q ss_pred ccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 232 GIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 232 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
+....+.+..++.+.|++++|.++|++....+ +-+..++..+..++.+.|+.++|...|+...+.
T Consensus 153 --------------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 153 --------------SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred --------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888899999999999999999999999843 345788999999999999999999999998765
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 011081 312 NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~ 364 (494)
- .+....|+.++. ++..-..+++++.-. |.+....+...+|..|.+
T Consensus 218 ~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 218 I-GDGARKLTRRLV------DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred h-CcchHHHHHHHH------HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 2 345556555543 233344455555433 222333444555555543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-05 Score=68.98 Aligned_cols=126 Identities=10% Similarity=0.101 Sum_probs=88.4
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH-HccCC--HHHH
Q 011081 260 EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF-CEIGE--MARA 336 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~A 336 (494)
.++.+++...++...+.. +.|...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666654 5567777778788888888888888888777764 34666777777653 56666 4788
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST 389 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 389 (494)
.+++++..+.+ +-+...+..+...+.+.|++++|...|+.+.+.. .|+..-
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 88888887765 4566777777777788888888888888877764 344433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0011 Score=67.55 Aligned_cols=260 Identities=13% Similarity=0.142 Sum_probs=124.9
Q ss_pred CCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCC--CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccc
Q 011081 155 GSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRG--LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAG 232 (494)
Q Consensus 155 ~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 232 (494)
..+|......++++...+- ..+.++++++.+-.. +.-+...-|.|+-...+ .+..+..+..+++-.-+
T Consensus 981 ~~dPe~vS~tVkAfMtadL---p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD------ 1050 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADL---PNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD------ 1050 (1666)
T ss_pred cCChHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC------
Confidence 3467778888899998888 888888888876322 11122233444433333 23344444444442221
Q ss_pred cccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 233 IGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 233 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
.|+ +...+...+-+++|+.+|+..- .+....+.||. .-+.+|.|.+.-++..
T Consensus 1051 -----------a~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n--- 1102 (1666)
T KOG0985|consen 1051 -----------APD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN--- 1102 (1666)
T ss_pred -----------chh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC---
Confidence 111 1223334445566666665432 23333333332 1233444443332221
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 011081 313 VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEV 392 (494)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 392 (494)
...+|..+..+-.+.|...+|++-|-+. -|+..|..+++...+.|.+++-.+++....+..-+|... +.
T Consensus 1103 ---~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~e 1171 (1666)
T KOG0985|consen 1103 ---EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SE 1171 (1666)
T ss_pred ---ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HH
Confidence 3334555555555555555555444322 233445555555555555555555554444443333322 24
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH--------------------------HHHHHHHHHhcCCHHHHHHHH
Q 011081 393 LIGELCDKRRVFEALDILKARVVKFGLFPTEKS--------------------------YMFLIKGLCEEGKMEEALKVQ 446 (494)
Q Consensus 393 li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--------------------------~~~li~~~~~~g~~~~A~~~~ 446 (494)
||-+|++.+++.+..+++. -||... |..|...+...|+++.|..--
T Consensus 1172 Li~AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHHHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555544443332 133333 445555555555555554433
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 447 AEMVGKGFEPSLEIYSAFIDGYMKEGNVEMA 477 (494)
Q Consensus 447 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 477 (494)
++. -+..||..+-.+|...+.+.-|
T Consensus 1244 RKA------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1244 RKA------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hhc------cchhHHHHHHHHHhchhhhhHH
Confidence 322 2455666666666655554443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0011 Score=59.51 Aligned_cols=308 Identities=7% Similarity=0.024 Sum_probs=200.8
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHh
Q 011081 110 TIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMS 189 (494)
Q Consensus 110 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~ 189 (494)
-+-..+...|++..|+.-|..+++-. ...|-++.. -...|...|+ -..|+.-+.++++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d-----p~~Y~aifr--------------RaT~yLAmGk---sk~al~Dl~rVle 100 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD-----PNNYQAIFR--------------RATVYLAMGK---SKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC-----chhHHHHHH--------------HHHHHhhhcC---CccchhhHHHHHh
Confidence 34555666677777777776665421 111111111 1123455566 6667777777766
Q ss_pred CCCCcChHh-HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHH--HHHHHHHhcCCHhHH
Q 011081 190 RGLSVKVST-CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFN--ALMVGFYREGAFEKV 266 (494)
Q Consensus 190 ~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~a 266 (494)
++||... -..-...+.+.|.++.|..=|+..+..++. .+...++. ....+....|+ ..+..+.-.|+...|
T Consensus 101 --lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s--~~~~~eaq--skl~~~~e~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 101 --LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS--NGLVLEAQ--SKLALIQEHWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred --cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC--cchhHHHH--HHHHhHHHHHHHHHHHHHHhcCCchhhH
Confidence 4566543 222345678899999999999999887663 11111111 11223333333 345566778999999
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 267 EDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 267 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
+.....+++.. +-|...|..-..+|...|++..|+.=+....+.. ..+..+..-+-..+...|+.+.++...++-++.
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 99999998864 5588888888999999999999988777665543 346666667778888999999999998888765
Q ss_pred CCCCCHHHH----HH---H------HHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHH
Q 011081 347 GVESSSVTF----EH---L------VNGYCRAGDVDSAILVYNDMCRKGFEPEGST---IEVLIGELCDKRRVFEALDIL 410 (494)
Q Consensus 347 ~~~~~~~~~----~~---l------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~ 410 (494)
.||.... -. + +......++|.++++-.+...+......... +..+..++...+++.+|++..
T Consensus 253 --dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 253 --DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred --CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 4554322 11 1 1233456778888888888777653322333 345556677788999999987
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 411 KARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 411 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.+.+. +.|+ ..++.--..+|.-...++.|+.=|+...+.
T Consensus 331 ~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 331 KEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 75553 3455 667777777888777888888888877754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00066 Score=67.52 Aligned_cols=332 Identities=13% Similarity=0.092 Sum_probs=186.1
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF 159 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (494)
...|+.+.|.+-...+. +...|..+.++|++.++++-|.-.+..|....+ ..++.++. ..+. .
T Consensus 739 vtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg-------aRAlR~a~-q~~~--e 801 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG-------ARALRRAQ-QNGE--E 801 (1416)
T ss_pred EEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh-------HHHHHHHH-hCCc--c
Confidence 34466666655544443 446899999999999999988877766654211 11111111 1111 1
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKR 239 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
.-.-+.......|- +++|..+|++-++.+ .|=..|...|.+++|.++-+.--.
T Consensus 802 ~eakvAvLAieLgM---lEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR--------------- 854 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGM---LEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR--------------- 854 (1416)
T ss_pred hhhHHHHHHHHHhh---HHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc---------------
Confidence 11111122234455 888888888776632 344556677888888776543311
Q ss_pred ccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH----------HcC---------CCcCHhHHHHHHHHHHhcCCHHH
Q 011081 240 VVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA----------RLG---------CEPDCYSYSVLMAVFCEERRMRE 300 (494)
Q Consensus 240 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------~~g---------~~p~~~~~~~li~~~~~~g~~~~ 300 (494)
.--..||..-..-+-..++.+.|+++|++.. ... -..|...|.-...-+-..|+.|.
T Consensus 855 ----iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 855 ----IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred ----eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 1123445555555556667777776665431 110 01233334444444445677777
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 301 AEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
|+.+|..... |-+++...|-.|+.++|-++-++- -|......|.+.|-..|++.+|..+|-+...
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7777766553 456777777888888887776553 3556777888999999999999988877542
Q ss_pred CC--C------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----
Q 011081 381 KG--F------EPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAE---- 448 (494)
Q Consensus 381 ~~--~------~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---- 448 (494)
-. + ..+...+|..+ .....+.-.|..+|++ .|.. +...+..|-+.|.+.+|+++--+
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal--~s~~~d~v~aArYyEe----~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf 1064 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLAL--MSGGSDLVSAARYYEE----LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQF 1064 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHh--hcCchhHHHHHHHHHH----cchh-----hhHHHHHHHhhcchHHHHHHHHhhccc
Confidence 10 0 00111111111 1122233334444441 2211 22344567778888777765322
Q ss_pred ----HHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 449 ----MVGKGF--EPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 449 ----m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
++...+ .-|+...+.-.+-++.+.++++|..++-...
T Consensus 1065 ~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1065 SALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 122223 3357777777777888888888887765443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.1e-05 Score=73.56 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=105.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
|.+.....+|.+|+.+++.++++.. -..-|-.+.+.|+..|+++.|.++|-+.- .++--|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4455566778888888887776532 23346667778888888888888876532 345667888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKAR 413 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 413 (494)
++|.++-.+.. |.......|.+-..-+-++|++.+|.++|-.+. .|+ ..|..|-+.|..+..+++..+
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k- 875 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK- 875 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH-
Confidence 88887765543 333445566666666777788777777765432 233 235566777777766666542
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 414 VVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 414 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
.+| ..-..|-..+..-|-..|++..|..-|-+.
T Consensus 876 --~h~-d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 876 --HHG-DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred --hCh-hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 111 011224444555566666666666655444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-05 Score=65.38 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=121.4
Q ss_pred HHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc
Q 011081 166 KCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP 245 (494)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (494)
..+...|+ -+....+....... ..-+....+.++....+.|++..|...|.+.....+ +
T Consensus 74 ~a~~~~G~---a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-----------------~ 132 (257)
T COG5010 74 TALYLRGD---ADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-----------------T 132 (257)
T ss_pred HHHHhccc---ccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-----------------C
Confidence 33444555 45555554443322 223556667788899999999999999999977653 4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
|..+|+.+.-+|.+.|++++|..-|.+..+.- .-+...++.+.-.|.-.|+++.|..++......+ .-|..+-..+..
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl 210 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLAL 210 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHH
Confidence 89999999999999999999999999988864 2355677888888999999999999999888774 347778888888
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 011081 326 GFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~ 345 (494)
.....|++++|.++...-..
T Consensus 211 ~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 211 VVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHhhcCChHHHHhhcccccc
Confidence 89999999999988766543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0024 Score=62.08 Aligned_cols=363 Identities=13% Similarity=0.099 Sum_probs=205.9
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHH-CCChhHHHHHHHHHHcCCCCCChHHHHHHH--HHH-hhhcC--
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSR-ARLIGPARDVIRVALRSPENDPKLKLFEVL--VKT-YRECG-- 155 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~-~~~~~-- 155 (494)
-|+-+.|........+.. .-+.+.|. ++..+-| -+++++|+..|..++.-+.. +..++..+ ++. ++...
T Consensus 54 lg~~~ea~~~vr~glr~d--~~S~vCwH-v~gl~~R~dK~Y~eaiKcy~nAl~~~~d--N~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRND--LKSHVCWH-VLGLLQRSDKKYDEAIKCYRNALKIEKD--NLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred ccchHHHHHHHHHHhccC--cccchhHH-HHHHHHhhhhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhhH
Confidence 355666766665554321 22334444 4444444 46799999999888875432 22222211 111 11111
Q ss_pred -----------C-ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCC-CCcChHhHHHHHH------HHHcCCChhHHH
Q 011081 156 -----------S-APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRG-LSVKVSTCNALIW------EVSRGKGVISGY 216 (494)
Q Consensus 156 -----------~-~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~------~~~~~~~~~~a~ 216 (494)
+ ....|..+..+.--.|+ ...|.++.+...+.- -.|+...+..... ...+.|..+.|+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~---y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGE---YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 1 22345566667777788 999999999888754 2456655554432 345667777777
Q ss_pred HHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHH-HHHhc
Q 011081 217 EIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMA-VFCEE 295 (494)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~ 295 (494)
+.+..-...- .-....-.+-...+.+.+++++|..++..++.. .||..-|...+. ++.+-
T Consensus 206 e~L~~~e~~i-----------------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~ 266 (700)
T KOG1156|consen 206 EHLLDNEKQI-----------------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKI 266 (700)
T ss_pred HHHHhhhhHH-----------------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHH
Confidence 7665542211 112222334556778889999999999999887 577666654444 33333
Q ss_pred CCHHHHH-HHHHHHHh----------------------------------CCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 011081 296 RRMREAE-KLWEEMRD----------------------------------KNVEHDVVAYNTIIGGFCEIGEMARAEEFF 340 (494)
Q Consensus 296 g~~~~a~-~~~~~m~~----------------------------------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 340 (494)
.+.-++. .+|....+ .|++ .++..+...|-.-...+-..++.
T Consensus 267 ~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lv 343 (700)
T KOG1156|consen 267 KDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLV 343 (700)
T ss_pred hhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHH
Confidence 2222222 44444332 2221 12233333332222111111222
Q ss_pred HHHHh----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCH
Q 011081 341 REMGL----SG----------VESSSVTF--EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG-STIEVLIGELCDKRRV 403 (494)
Q Consensus 341 ~~m~~----~~----------~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~ 403 (494)
-.+.. .| -+|+...| -.++..|-+.|+++.|..+++..+.+ .|+. ..|..-...+.+.|.+
T Consensus 344 t~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l 421 (700)
T KOG1156|consen 344 TSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLL 421 (700)
T ss_pred HHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCCh
Confidence 22221 11 14555544 45678889999999999999998876 4543 3455556889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 404 FEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRK 482 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 482 (494)
++|...+++ ..+.. .+|...-.--..-..+.++.++|.++....-+.|. +..-+-+-+. |.-=.++.|..+++
T Consensus 422 ~eAa~~l~e-a~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mq--cmWf~~E~g~ay~r 494 (700)
T KOG1156|consen 422 DEAAAWLDE-AQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQ--CMWFQLEDGEAYLR 494 (700)
T ss_pred HHHHHHHHH-HHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhh--hHHHhHhhhHHHHH
Confidence 999999984 33322 35554433556667788999999999999988775 4333333333 23333444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.9e-05 Score=62.38 Aligned_cols=95 Identities=11% Similarity=-0.025 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3445566667777777777777766654 3456666667777777777777777777776653 4466666777777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011081 330 IGEMARAEEFFREMGLS 346 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~ 346 (494)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.001 Score=62.55 Aligned_cols=191 Identities=13% Similarity=0.078 Sum_probs=140.1
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
.|+...+...+.+......-..+-.++.+-.+. --.....-..-.+...|++++|+..++.+...- +-|...+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 567777777777666555444444444333321 112233333345667899999999999988762 4566677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESS-SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR 402 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 402 (494)
.+.+.+.++.++|.+.++.+... .|+ ......+..+|.+.|++.+|..+++...... +-|...|..|..+|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 88999999999999999999886 454 6677778889999999999999999988775 5588899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 403 VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIY 461 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (494)
..++..... ..|...|+++.|...+....+. .+++..+|
T Consensus 424 ~~~a~~A~A-------------------E~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 424 RAEALLARA-------------------EGYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred hHHHHHHHH-------------------HHHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 887766543 3566789999999998888876 34444444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00018 Score=73.53 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=124.4
Q ss_pred CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011081 192 LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWV 271 (494)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (494)
...++..+-.|.......|..++|..+++...+..|+ +...+..+...+.+.+++++|+..++
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-----------------~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-----------------SSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-----------------cHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3446888889999999999999999999999887665 78888999999999999999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 011081 272 EMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS 351 (494)
Q Consensus 272 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 351 (494)
+..... +-+......+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+.- .+.
T Consensus 145 ~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~ 221 (694)
T PRK15179 145 LYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDG 221 (694)
T ss_pred HHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-Ccc
Confidence 999874 3355667788888999999999999999999843 4458899999999999999999999999997763 344
Q ss_pred HHHHHHH
Q 011081 352 SVTFEHL 358 (494)
Q Consensus 352 ~~~~~~l 358 (494)
...|+..
T Consensus 222 ~~~~~~~ 228 (694)
T PRK15179 222 ARKLTRR 228 (694)
T ss_pred hHHHHHH
Confidence 4555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-05 Score=63.19 Aligned_cols=109 Identities=9% Similarity=-0.056 Sum_probs=89.3
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG 261 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 261 (494)
.++++..+. .|+ .+..+...+...|++++|...|+.....++. +...|..+..++.+.|
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-----------------SWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------cHHHHHHHHHHHHHHh
Confidence 344555442 333 3556777888999999999999999877654 8889999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
++++|...|++..+.. +.+..++..+..++...|++++|...|+...+..
T Consensus 73 ~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 73 EYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred hHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999865 5577888999999999999999999999998863
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-05 Score=61.73 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
......+...+.+.|++++|.+.|+.....+ +.+...+..+...+.+.|++++|..+++...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445555566666666666666666665543 3355556666666666666666666666665553 3345555556666
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 011081 327 FCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~ 346 (494)
|...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00038 Score=60.13 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=88.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE---- 329 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 329 (494)
...|++.|++++|++...... +......=+..+.+..+++-|.+.++.|.+.. +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 355667777777777766521 22222333344556667777777777777653 55566655555543
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011081 330 IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDI 409 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 409 (494)
.+...+|.-+|++|-++- +|+..+.+-...++...|++++|..++++.+.+.. -+..+...++-.-...|...++..-
T Consensus 186 gek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHH
Confidence 345677777777776642 67777777777777777777777777777776653 2455555555554555555444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00032 Score=69.66 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=109.8
Q ss_pred HHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHH
Q 011081 206 VSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSY 285 (494)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 285 (494)
....|.+++|+.+|++-.. |..|=..|...|.|++|+++-+.--+..+ ..||
T Consensus 810 AieLgMlEeA~~lYr~ckR-------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR-------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH-------------------------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 3466888999999988743 44555667778999999988764332222 3466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----------CC---------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRD----------KN---------VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~----------~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.....-+-..++.+.|++.|++... .. -..|...|.-....+-..|+.+.|+.+|....
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-- 939 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-- 939 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--
Confidence 6666677777888888888765321 11 02233444445555556677777777776653
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 347 GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
-|-.++...|-.|+.++|-++-++ .| |......+.+.|.+.|++.+|..+|.+
T Consensus 940 -------D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 940 -------DYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred -------hhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 245566666777888877777654 22 566677788888999999999888863
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0037 Score=59.60 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 011081 368 VDSAILVYNDMCRK-GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKV 445 (494)
Q Consensus 368 ~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 445 (494)
.+.....+++++.. .+.| ..+|..+++...+...+..|..+|.+. .+.+..+ ++..+++++.-||. ++.+.|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~ka-R~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKA-REDKRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHH-hhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 34444555555443 2233 356777888888888999999999854 4445445 77788888887775 788999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccccc
Q 011081 446 QAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQE 492 (494)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~pd 492 (494)
|+--++. +.-+..--...++-+...++-..|+.+|++.+..+..+|
T Consensus 424 FeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 424 FELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 9988765 344455556778888899999999999999988855544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0044 Score=59.71 Aligned_cols=369 Identities=12% Similarity=0.111 Sum_probs=199.6
Q ss_pred cCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhc--------
Q 011081 83 NNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYREC-------- 154 (494)
Q Consensus 83 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 154 (494)
+.++.|+....... +-+..+...-...|-+.+++++|.++|..+.++...+.+...-..++..-...
T Consensus 93 nk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 44555555554221 11222444445667788999999999999988775555554444443321111
Q ss_pred CC-ChhhHHHHHH---HHHhcCChhcHHHHHHHHHHHHhCCC-------------CcChH-hHHHHHHHHHcCCChhHHH
Q 011081 155 GS-APFVFDLLIK---CCLEVKNIEKIETCVDIVRMLMSRGL-------------SVKVS-TCNALIWEVSRGKGVISGY 216 (494)
Q Consensus 155 ~~-~~~~~~~li~---~~~~~~~~~~~~~a~~~~~~m~~~g~-------------~~~~~-~~~~ll~~~~~~~~~~~a~ 216 (494)
.- ...+|..+.. .+...|+ +.+|+++++...+.+. .-... .-..|..++...|+.++|.
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gk---y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGK---YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 11 1235555443 3456777 9999999998843221 10111 1223455678899999999
Q ss_pred HHHHHHhcCCccccccccccccccccccc-CHHHHHHHHHHHHhcCCHh-HHHHHHHHHHH-----------cCCCcCHh
Q 011081 217 EIYREVFGLDSDATAGIGKDVKRVVRVRP-NVHTFNALMVGFYREGAFE-KVEDVWVEMAR-----------LGCEPDCY 283 (494)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~-----------~g~~p~~~ 283 (494)
++|...+..++.. .| -.+.-|.++..-....-++ .++..++.... .. .-...
T Consensus 245 ~iy~~~i~~~~~D--------------~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i 309 (652)
T KOG2376|consen 245 SIYVDIIKRNPAD--------------EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAI 309 (652)
T ss_pred HHHHHHHHhcCCC--------------chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHH
Confidence 9999998765430 11 1122222222111111111 11111111110 00 00111
Q ss_pred HH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 284 SY-SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE--IGEMARAEEFFREMGLSGVESSSVTFEHLVN 360 (494)
Q Consensus 284 ~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (494)
.. +.++..|. +.-+.+.++-..... ..|.. .+.+++....+ ...+.++.+++...-+..-.-.....-.++.
T Consensus 310 ~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 310 YRNNALLALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 11 22333332 223333333322222 13333 33344433322 2246677777777665532223455666777
Q ss_pred HHHhcCCHHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CCCHHH----HH
Q 011081 361 GYCRAGDVDSAILVYN--------DMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGL-FPTEKS----YM 427 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~----~~ 427 (494)
.....|+++.|.+++. .+.+.+..|- +...++..+.+.++-+.|..++.+.+..... .+.... +.
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 7888899999999988 5555555554 4455666677777766666666655443211 111222 23
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
-+...-.+.|+.++|..+++++.+. .++|..+...++.+|++. +.+.|..+-+.
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 3333445679999999999999975 377889999999999887 56777666443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-05 Score=61.13 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=74.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNG 361 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 361 (494)
......+...+.+.|++++|.+.++.+...+ +.+...|..+...|.+.|++++|..+|++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445666677777888888888888877654 4467777788888888888888888888777664 5566777777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 011081 362 YCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~~~ 382 (494)
|...|++++|...|+...+.+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc
Confidence 888888888888888777653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-06 Score=51.01 Aligned_cols=33 Identities=36% Similarity=0.680 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPD 281 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 281 (494)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577888888888888888888888887777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.2e-06 Score=50.54 Aligned_cols=33 Identities=42% Similarity=0.815 Sum_probs=15.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESS 351 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 351 (494)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0013 Score=56.55 Aligned_cols=187 Identities=16% Similarity=0.084 Sum_probs=131.8
Q ss_pred CCHhHHHHHHHHHHHc---C-CCcCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011081 261 GAFEKVEDVWVEMARL---G-CEPDCYS-YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 261 g~~~~a~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
.+.++..+++.++... | ..++..+ |..++-+....|+.+.|...++.+...- +-+..+-..-..-+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4677778877777543 3 4455543 5666677778899999999999887652 2222222222233445788999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
|+++|+.+.+.+ +.|.+++--=+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++.+-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999998886 667777776666666777777888888777765 466889999999999999999999999987766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 011081 416 KFGLFPTEKSYMFLIKGLCEEG---KMEEALKVQAEMVGK 452 (494)
Q Consensus 416 ~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 452 (494)
... .+...+..+...+.-.| +++.|.++|.+.++.
T Consensus 183 ~~P--~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQP--FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 543 23444555555544333 577788888888865
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.004 Score=61.46 Aligned_cols=109 Identities=21% Similarity=0.260 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 354 TFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGL 433 (494)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 433 (494)
-|..+.+.|+..|+++.|.++|-+. ..++-.|..|.+.|+++.|.++-. +-.|-......|-+-..-+
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~---e~~~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAE---ECHGPEATISLYIAKAEDL 834 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHH---HhcCchhHHHHHHHhHHhH
Confidence 3455555666666666666665442 123444555666666666655533 2223233334444444445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 434 CEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
-+.|++.+|.++|-.. | .|+. -|..|-++|..++.+++.++
T Consensus 835 dehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 5566666666665544 2 3442 45566666666666666544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.002 Score=60.77 Aligned_cols=144 Identities=11% Similarity=0.137 Sum_probs=117.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD-VVAYNTIIGGFCE 329 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 329 (494)
.-..-.+.+.|++++|+..++.+...- +-|..........+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence 333445667899999999999988762 334555566778899999999999999999987 455 6778888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011081 330 IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDI 409 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 409 (494)
.|++.+|+.++++..... +-|...|..|..+|...|+..++..-..+. +...|++++|+..
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHH
Confidence 999999999999998875 788999999999999999998888776664 5567899999888
Q ss_pred HHHHHHh
Q 011081 410 LKARVVK 416 (494)
Q Consensus 410 ~~~~~~~ 416 (494)
+....+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 8754443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0019 Score=63.98 Aligned_cols=286 Identities=11% Similarity=0.005 Sum_probs=170.9
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccc-ccc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAG-IGK 235 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 235 (494)
|+.+.--+---|+..++ ++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..+..-+..-.- .++
T Consensus 477 dp~~if~lalq~A~~R~---l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQ---LTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CchHHHHHHHHHHHHHh---HHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 44333333334666677 99999999999998667788999999999999999999999988876543220000 000
Q ss_pred --ccccccccccCHHHHHHHHHHHHhcCCHhH------HHHHHHHHHHc-C-CCcCHhHHHHHHHHHHhcCCHHHHHHHH
Q 011081 236 --DVKRVVRVRPNVHTFNALMVGFYREGAFEK------VEDVWVEMARL-G-CEPDCYSYSVLMAVFCEERRMREAEKLW 305 (494)
Q Consensus 236 --~~~~~~~~~p~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~g~~~~a~~~~ 305 (494)
-.-...+..--..|+..++..+-..-.++. .+++...+.-. + ..-...++..+.......+....-...
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 000011222233444444433331111111 11111111100 0 000112222222211111100000000
Q ss_pred HHHHhCCCCC--C------HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 306 EEMRDKNVEH--D------VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 306 ~~m~~~g~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
+...-..| + ...|......+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|..
T Consensus 633 --Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 --LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred --cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11111111 1 2357777888889999999988888877654 55667788888888899999999999998
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 378 MCRKGFEPEGSTIEVLIGELCDKRRVFEALD--ILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 378 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
....+ +-+.....++...+.+.|+...|.. ++.++++-. +-+...|-.+...+-+.|+.+.|-+.|....+.
T Consensus 710 Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 87754 2245577888888889998877777 777555443 346778888999999999999999999888754
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.9e-06 Score=49.63 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEP 280 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 280 (494)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00035 Score=60.36 Aligned_cols=172 Identities=10% Similarity=0.056 Sum_probs=124.4
Q ss_pred HHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC
Q 011081 183 IVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA 262 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 262 (494)
+.+.+......-+......-...|+..+++++|++...... +......=+..+.+..+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----------------------~lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----------------------NLEAAALNVQILLKMHR 152 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----------------------hHHHHHHHHHHHHHHHH
Confidence 44444444334343333334456889999999999887631 34444444566778889
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
++-|.+.+++|.+.. +..|.+-|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..
T Consensus 153 ~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 153 FDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 999999999998753 66777777777765 46789999999999875 37899999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 011081 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDS-AILVYNDMCRK 381 (494)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 381 (494)
++++...+. ..+..+...++..-...|...+ ..+.+.++...
T Consensus 229 lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 229 LLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999886 4566777666666666666544 44556666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.2e-06 Score=48.93 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=11.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGV 348 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 348 (494)
|+.+|.+|++.|+++.|.++|++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333333333333333333333333333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0031 Score=54.33 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=139.7
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011081 295 ERRMREAEKLWEEMRDK---N-VEHDVV-AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVD 369 (494)
Q Consensus 295 ~g~~~~a~~~~~~m~~~---g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (494)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++...- +-+...-..-.--+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35667777887777542 3 444543 45666677778999999999999988762 222222222222345679999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
+|+++|+.+++.+ +.|.+++-.-+...-..|+--+|++-+.+.++.. .-|...|.-+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999987 5577788777777777888889999888777654 578999999999999999999999999999
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHccc
Q 011081 450 VGKGFEP-SLEIYSAFIDGYMKEG---NVEMATMLRKEMFENQV 489 (494)
Q Consensus 450 ~~~~~~p-~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~ 489 (494)
+-. .| +...+..+.+.+.-.| +.+-+++++.+.++.++
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 853 55 4555566666544433 67788899998888765
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00052 Score=55.95 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD---CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD--VVAYNT 322 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ 322 (494)
..|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........++ ....-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3445555554 3667777777777776653 212 12223344566677777777777777776642222 123444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 378 (494)
+...+...|++++|+..++..... ......+......|.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566677777777777777554322 233445556666777777777777777653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00033 Score=66.30 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...-..|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444566777778899999999999999774 55 44557888888899999999999988763 4467777777788
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 379 (494)
+.+.++++.|+++.+++.+.. +-+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999873 4455699999999999999999999998874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.3e-05 Score=70.55 Aligned_cols=121 Identities=14% Similarity=0.080 Sum_probs=104.0
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARL--GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT 322 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (494)
.+......+++.+....+++++..++.+.... ....-..|..++|+.|.+.|..+.++.+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 36677778888888888999999999988776 2223345667999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA 365 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 365 (494)
||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888778888887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0064 Score=62.20 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHH
Q 011081 143 LFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIY 219 (494)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 219 (494)
.|..++++.+....-..+|..|...|...-+ ..+|.+.|+...+.+.. +...+......|++..+++.|..+.
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 3444444433333334556666666666555 66777777766664432 5566666777777777777777663
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0065 Score=61.46 Aligned_cols=224 Identities=16% Similarity=0.156 Sum_probs=111.3
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVF--CEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 336 (494)
..+++..|......+.+. .|+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...|+.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 445666777666666554 3443 233344433 4567777777666666555433 666677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------CHHHH
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR----------RVFEA 406 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------~~~~a 406 (494)
..+|++.... .|+......+..+|.+.+++.+-.+.=-+|-+ .++-+...|-++++.+.+.. -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 7777776654 45566666666666666665442222222222 12223344444444433221 11224
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 407 LDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQA-EMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 407 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
.+.++..+++.|-.-+..-.-.....+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++..+++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444443311111111222233445566677766663 22222112223333334445555566666666555555
Q ss_pred Hccc
Q 011081 486 ENQV 489 (494)
Q Consensus 486 ~~~~ 489 (494)
+.|.
T Consensus 254 ~k~~ 257 (932)
T KOG2053|consen 254 EKGN 257 (932)
T ss_pred HhCC
Confidence 5543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=54.33 Aligned_cols=81 Identities=10% Similarity=0.311 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcCHhHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGC-EPDCYSYSVLMAVFCEER--------RMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
|....|..+...+++.....+|..+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666666888888888888888887 778888888887776642 23345566666666666666666
Q ss_pred HHHHHHHHHc
Q 011081 320 YNTIIGGFCE 329 (494)
Q Consensus 320 ~~~li~~~~~ 329 (494)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00046 Score=56.26 Aligned_cols=128 Identities=9% Similarity=0.093 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 278 (494)
|..++..+. .++...+.+.++.+....+. ........-.+...+...|++++|...|+.......
T Consensus 15 y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~--------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 15 YEQALQALQ-AGDPAKAEAAAEQLAKDYPS--------------SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP 79 (145)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHCCC--------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 444444443 67777788888888665432 011234444566788889999999999999888752
Q ss_pred CcCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 279 EPDC--YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 279 ~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
.++. .....|...+...|++++|+..++..... ......+......|.+.|++++|...|+..
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 2221 23445677888899999999998775443 335556778888999999999999988764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.2e-05 Score=45.83 Aligned_cols=29 Identities=41% Similarity=0.903 Sum_probs=13.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.95 E-value=9e-06 Score=46.31 Aligned_cols=29 Identities=38% Similarity=0.739 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00036 Score=66.03 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 278 (494)
..+|+..+...++++.|.++|+++.+.+ |++ ...++..+...++-.+|.+++.+..+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~------------------pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~- 230 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD------------------PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN- 230 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC------------------CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-
Confidence 4456667777899999999999997653 343 3457888888899999999999988763
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
+-+......-...+.+.++++.|+++.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 4466677777788999999999999999999873 3456699999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0081 Score=60.78 Aligned_cols=224 Identities=12% Similarity=0.079 Sum_probs=150.5
Q ss_pred HcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH--HHhcCCHhHHHHHHHHHHHcCCCcCHhH
Q 011081 207 SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG--FYREGAFEKVEDVWVEMARLGCEPDCYS 284 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 284 (494)
...+++..|++...+....- |+.. |...+.+ ..+.|+.++|..+++.....+.. |..|
T Consensus 20 ld~~qfkkal~~~~kllkk~------------------Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~t 79 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH------------------PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLT 79 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC------------------CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHH
Confidence 34577888888888876643 3332 3333333 45789999999999888776644 8899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
...+-..|.+.++.++|..+|+...+. .|+..-...+..+|.+.+.+.+-.+.--+|.+. .+.+...+=.++..+.+
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 999999999999999999999999887 577888888899999998887654444444332 12233333223332222
Q ss_pred c-CC---------HHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 365 A-GD---------VDSAILVYNDMCRKG-FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGL 433 (494)
Q Consensus 365 ~-g~---------~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 433 (494)
. .. ..-|.+.++.+.+.+ -.-+..-...-...+...|++++|++++.....+.-...+...-+.-+..+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 1 11 223566666666654 222222233334556678999999999964444443344455555677888
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 011081 434 CEEGKMEEALKVQAEMVGKG 453 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~ 453 (494)
...+++.+..++-.++...|
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcChHHHHHHHHHHHHhC
Confidence 88999999999999998875
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0014 Score=66.72 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
...++..|-+..+.... =...|..|..-|+...+...|.+.|+.+++.++. +...+......
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-----------------daeaaaa~adt 535 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-----------------DAEAAAASADT 535 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------------hhhhHHHHHHH
Confidence 55666666555553322 2466888999999888999999999999998765 88999999999
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDC--YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMA 334 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (494)
|++..++++|..+.-..-+.. +.-. ..|....-.|.+.++..+|...|+...+.. +.|...|..++.+|..+|++.
T Consensus 536 yae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCcee
Confidence 999999999999843322221 1111 122234445677889999999999988875 558889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 335 RAEEFFREMGLSGVESSSV-TFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.|.++|.+.... .|+.. .---....-+..|.+.+|+..+...+.
T Consensus 614 ~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 614 HALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999888764 44432 111222345677888888888877654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00025 Score=52.84 Aligned_cols=78 Identities=8% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhHHHHHHHHHHccCC--------HHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKNV-EHDVVAYNTIIGGFCEIGE--------MARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..- .-+.+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555566777777777888877777 7777788877777665421 223455566666666666666666
Q ss_pred HHHHHHH
Q 011081 357 HLVNGYC 363 (494)
Q Consensus 357 ~li~~~~ 363 (494)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00041 Score=65.95 Aligned_cols=124 Identities=13% Similarity=0.120 Sum_probs=104.4
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK--NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
+.+.+......+++.+....+++.+..++...... ....-..|..++|..|.+.|..++++.+++.=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557777888899999999999999999888765 2223345567999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
+|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887766777777666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00045 Score=51.04 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=20.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
...+...|++++|..++++..+.. +.+...+..+...+...+++++|.+.++...
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433321 1122233333333444444444444444333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00043 Score=51.16 Aligned_cols=96 Identities=15% Similarity=0.228 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
++..+...+...|++++|..+++...+.. +.+...+..+...+...|++++|.+.|++..... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35667778889999999999999998764 3355788889999999999999999999988765 445578888999999
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 011081 364 RAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (494)
..|+.++|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999988764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00092 Score=52.25 Aligned_cols=94 Identities=11% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHhHHHHHH
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPD----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE--HDVVAYNTII 324 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li 324 (494)
..+...+.+.|++++|...|..+.+.. |+ ...+..+...+.+.|+++.|...|+.+...... ....++..+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344444455555555555555554431 11 223344445555555555555555554433100 1123344444
Q ss_pred HHHHccCCHHHHHHHHHHHHhC
Q 011081 325 GGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 4555555555555555555444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.04 Score=52.76 Aligned_cols=349 Identities=14% Similarity=0.068 Sum_probs=220.0
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF 159 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (494)
+-.++.+.|+..|.....-. +++.+.|+.-..+++..|++++|..=-...++ -+..-+.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-------------------l~p~w~k 71 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRR-------------------LNPDWAK 71 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHh-------------------cCCchhh
Confidence 34567888999988876443 56788899999999999999888654443332 1223356
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCC------------------------hhHH
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKG------------------------VISG 215 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~------------------------~~~a 215 (494)
.|+....++.-.|+ +++|+..|.+-++.... +...++.+..++..... .+.+
T Consensus 72 gy~r~Gaa~~~lg~---~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 72 GYSRKGAALFGLGD---YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred HHHHhHHHHHhccc---HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 77777777888888 99999999887775433 55556666655521100 0000
Q ss_pred HHHHHHHhcCCcccccc----------------c----------------cccccccccccc-------------CHHHH
Q 011081 216 YEIYREVFGLDSDATAG----------------I----------------GKDVKRVVRVRP-------------NVHTF 250 (494)
Q Consensus 216 ~~~~~~~~~~~~~~~~~----------------~----------------~~~~~~~~~~~p-------------~~~~~ 250 (494)
.....+....++..... + .+...+.....| -..-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 00000111111110000 0 000011111111 11224
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH-------H
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT-------I 323 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-------l 323 (494)
-.+.++..+..++..|++-+....+.. -+..-++....+|...|.+..+...-+...+.|.+ ...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 567778888889999999999888764 45555677777888888888887777766665521 2222333 3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESSSVTF-------------------------EHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m 378 (494)
..+|.+.++++.|+..|.+.......|+..+= -.-...+.+.|++..|...|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34667778899999999987766545544321 11245567889999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 379 CRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 379 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
++.+ +-|...|....-+|.+.|.+..|+.-.+..++. .|+ ...|..=..++.-..++++|.+.|.+.++. .|+
T Consensus 385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~ 458 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPS 458 (539)
T ss_pred HhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cch
Confidence 9987 457889999999999999999999987755543 233 233433344444556788999999988865 455
Q ss_pred HHHHH
Q 011081 458 LEIYS 462 (494)
Q Consensus 458 ~~~~~ 462 (494)
..-+.
T Consensus 459 ~~e~~ 463 (539)
T KOG0548|consen 459 NAEAI 463 (539)
T ss_pred hHHHH
Confidence 44333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0012 Score=60.42 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=53.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNG-YCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGEL 397 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 397 (494)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44444555444444555555555554332 1122222222222 11123333455555554443 223344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 398 CDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
.+.++.+.|..+|++.+....-.. ....|...+..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555544333221111 122444444444444555555555544443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0015 Score=51.07 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 011081 354 TFEHLVNGYCRAGDVDSAILVYNDMCRKGFE--PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLI 430 (494)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 430 (494)
++..+...+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|++++|.+.++..+....-.+ ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555566666666666666666554211 0123444455666666666666666665444332111 133455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 011081 431 KGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0013 Score=60.10 Aligned_cols=131 Identities=13% Similarity=0.138 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAV-FCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
.+|-.+++...+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888999999989999999999998653 2234445444444 33357777799999998876 46688889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESS---SVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
+.+.|+.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999876 2332 258999999999999999999999888774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.068 Score=52.89 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 011081 426 YMFLIKGLCEEGKMEEALKVQAEMVGK-GFEPSLEIYSAFIDGYMKE 471 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~ 471 (494)
|-.|.+--...|.++.|++.--.+.+. .+-|-..+|+.|.-+.+..
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 334444455678888888766555543 4667777777665544443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0044 Score=52.18 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD--CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 456677788888888999999999998876532222 3567788888888999999999888887753 3356667777
Q ss_pred HHHHHccCCHHHHHHH
Q 011081 324 IGGFCEIGEMARAEEF 339 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~ 339 (494)
..+|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777775554433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=55.03 Aligned_cols=105 Identities=19% Similarity=0.323 Sum_probs=60.1
Q ss_pred CcCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 011081 279 EPDCYSYSVLMAVFCE-----ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSV 353 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 353 (494)
..|..+|..+++.|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~----------- 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA----------- 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence 4466677777777664 36667777777788888888888888888877654 3221 0111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011081 354 TFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR 402 (494)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 402 (494)
+..-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 111 ----~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 ----EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 11234455666666666666666666666665554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.026 Score=50.29 Aligned_cols=185 Identities=9% Similarity=0.045 Sum_probs=113.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY---NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEH 357 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 357 (494)
+...+-.....+.+.|++++|.+.|+.+...-.. +.... -.++.+|.+.+++++|...|++..+....-...-|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333444555667789999999999999876322 22222 3566788899999999999999987632222233333
Q ss_pred HHHHHHh--cC---------------C---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 011081 358 LVNGYCR--AG---------------D---VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKF 417 (494)
Q Consensus 358 li~~~~~--~g---------------~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 417 (494)
.+.+.+. .+ + ..+|+..|+++++. |-...-..+|...+. .+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~-~l~~~ 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLV-FLKDR 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHH-HHHHH
Confidence 3444331 11 1 12344455555443 222333444444333 11110
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 418 GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK--GFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 418 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
. ...--.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+..
T Consensus 174 ---l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 ---L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred ---H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 0 111124667789999999999999999976 3333466777888999999999999998876644
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.016 Score=53.19 Aligned_cols=128 Identities=15% Similarity=0.235 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---cC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--Hh
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCE---PD--CYSYSVLMAVFCEERRMREAEKLWEEMRD----KNVEHD--VV 318 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~--~~ 318 (494)
|.-....|...|++++|.+.|.+..+.... +. ...|......|.+ .++++|.+.++...+ .| .++ ..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHHH
Confidence 333456677778888887777766432111 11 1223333334433 377777766665542 22 111 22
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 319 AYNTIIGGFCEI-GEMARAEEFFREMGLS----GVESS--SVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 319 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.+..+...|... |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|+++..
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555 5666666666554331 1 111 12334445555556666666666655554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0019 Score=54.55 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=68.1
Q ss_pred ccCHHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 244 RPNVHTFNALMVGFYRE-----GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
..|..+|..++..|.+. |..+-....+..|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 55889999999998864 6788888899999999999999999999998765 2221 1111221111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (494)
-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 114 -------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 11234455666666666666666666666666554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=52.02 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=8.4
Q ss_pred HHHHHHccCCHHHHHHHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFRE 342 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~ 342 (494)
+..+|.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0025 Score=53.40 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=55.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH--DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV 359 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 359 (494)
...|..+...+...|++++|...|+........+ ...+|..+...|...|++++|++.+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666666666777777777777776542221 23466777777777777777777777766542 23334455555
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 011081 360 NGYC-------RAGDVDSAILVYN 376 (494)
Q Consensus 360 ~~~~-------~~g~~~~a~~~~~ 376 (494)
..+. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5554 4555554443333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.012 Score=47.53 Aligned_cols=93 Identities=17% Similarity=0.043 Sum_probs=49.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR 401 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 401 (494)
.+..-+...|++++|..+|+-+..-+ +-+..-|..|..+|-..|++++|+..|......+. -|...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 34444455556666666665555443 33444455555555555666666666665555442 24445555555555556
Q ss_pred CHHHHHHHHHHHHHh
Q 011081 402 RVFEALDILKARVVK 416 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~ 416 (494)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666665555544433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0031 Score=59.81 Aligned_cols=92 Identities=11% Similarity=0.025 Sum_probs=80.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
...+...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..++.+++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 456678899999999999999875 4467788889999999999999999999998875 44778899999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 011081 334 ARAEEFFREMGLSG 347 (494)
Q Consensus 334 ~~A~~~~~~m~~~~ 347 (494)
++|...|++..+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998864
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0064 Score=60.42 Aligned_cols=137 Identities=10% Similarity=0.014 Sum_probs=73.1
Q ss_pred CCCCcChHhHHHHHHHHHcC-----CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC--
Q 011081 190 RGLSVKVSTCNALIWEVSRG-----KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA-- 262 (494)
Q Consensus 190 ~g~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-- 262 (494)
.+...+...|...+++.... ++...|..+|+++.+.+|. ....|..+..++.....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-----------------~a~a~A~la~~~~~~~~~~ 393 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-----------------FTYAQAEKALADIVRHSQQ 393 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHHHhcC
Confidence 34556888899888875432 2367999999999887765 45555555444432211
Q ss_pred ------HhHHHHHHHHHHHc-CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011081 263 ------FEKVEDVWVEMARL-GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 263 ------~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
+..+.+...+.... ....+...|..+.-.+...|++++|...+++....+ |+...|..+...|...|+.++
T Consensus 394 ~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 394 PLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred CccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHH
Confidence 11222222221111 112233444444444444555555555555555542 345555555555555555555
Q ss_pred HHHHHHHHHh
Q 011081 336 AEEFFREMGL 345 (494)
Q Consensus 336 A~~~~~~m~~ 345 (494)
|.+.|++...
T Consensus 472 A~~~~~~A~~ 481 (517)
T PRK10153 472 AADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0038 Score=50.27 Aligned_cols=96 Identities=9% Similarity=-0.018 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
....+...+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|++.|......+ +-|...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34445556677888888888888877664 3466667777788888888888888888887776 466777777888888
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 011081 364 RAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (494)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888877653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=59.92 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=80.1
Q ss_pred HHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 011081 203 IWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC 282 (494)
Q Consensus 203 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 282 (494)
...+...|+++.|.+.|++++..++. +...|..+..+|.+.|++++|+..+++.++.. +.+.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~ 70 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-----------------NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLA 70 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 34566779999999999999887654 77889999999999999999999999998875 4467
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
..|..+..+|...|++++|...|++..+.+
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 788899999999999999999999998874
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00033 Score=50.96 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011081 400 KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 478 (494)
.|+++.|+.++++........++...+-.+..+|.+.|++++|..++++ .+ ..++ ......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3455555555554444432111233333455666666666666666655 21 2222 233333445566666666666
Q ss_pred HHHHH
Q 011081 479 MLRKE 483 (494)
Q Consensus 479 ~~~~~ 483 (494)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.009 Score=50.28 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=69.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD--VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
....+..+...+...|++++|...|++..+.+..+. ...+..+...|.+.|++++|...+++..... +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344677788888899999999999999886532222 4678888999999999999999999988763 3456667777
Q ss_pred HHHHHhcCCHHHHHH
Q 011081 359 VNGYCRAGDVDSAIL 373 (494)
Q Consensus 359 i~~~~~~g~~~~a~~ 373 (494)
...|...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777777544443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.047 Score=44.93 Aligned_cols=157 Identities=11% Similarity=0.155 Sum_probs=102.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 287 VLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366 (494)
Q Consensus 287 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (494)
.+..+..+.=+.+...+-..+-. ...|++..-..|..+....|+..+|...|++....-.--|......+.++....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 34444445445554433222222 2367777777888888888888888888888876544556777777778888888
Q ss_pred CHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011081 367 DVDSAILVYNDMCRKG---FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEAL 443 (494)
Q Consensus 367 ~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 443 (494)
++..|...++++-+.. -.|| +...+...+...|+..+|...|+..+... |+...-......+.+.|+.+++.
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHH
Confidence 8888888888887753 2333 34456677788888888888887655543 55544444445566777776666
Q ss_pred HHHHHHH
Q 011081 444 KVQAEMV 450 (494)
Q Consensus 444 ~~~~~m~ 450 (494)
.-+....
T Consensus 214 aq~~~v~ 220 (251)
T COG4700 214 AQYVAVV 220 (251)
T ss_pred HHHHHHH
Confidence 5444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.016 Score=53.17 Aligned_cols=158 Identities=19% Similarity=0.181 Sum_probs=69.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----CCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC--HHHHHHH
Q 011081 290 AVFCEERRMREAEKLWEEMRD----KNVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGL----SGVESS--SVTFEHL 358 (494)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~--~~~~~~l 358 (494)
..|-..|++++|.+.|....+ .+-.. -...|.....+|.+. ++++|.+.+++..+ .| .++ ...+..+
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~l 120 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Confidence 345555666666555554421 11000 112233333333333 66666665555432 12 121 1233444
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHH----CCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CCCCHH-HH
Q 011081 359 VNGYCRA-GDVDSAILVYNDMCR----KGFEP--EGSTIEVLIGELCDKRRVFEALDILKARVVKFG----LFPTEK-SY 426 (494)
Q Consensus 359 i~~~~~~-g~~~~a~~~~~~m~~----~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~-~~ 426 (494)
...|... |++++|.+.|++..+ .| .+ -..++..+...+.+.|++++|.++|++.....- ...+.. .|
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 5555555 666677666666544 12 11 123344555666666666666666664433211 111111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 427 MFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
-..+-++...||...|.+.+++..
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222334445566666666666665
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0047 Score=51.76 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEP--DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
....|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|.+.++...... +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 46677888888999999999999999997663222 23578889999999999999999999988763 3345667777
Q ss_pred HHHHH-------ccCCHHHHHHHHHH
Q 011081 324 IGGFC-------EIGEMARAEEFFRE 342 (494)
Q Consensus 324 i~~~~-------~~g~~~~A~~~~~~ 342 (494)
...|. +.|+++.|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 77777 66776655554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.014 Score=51.87 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=78.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS 370 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (494)
-..+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+.....+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3557788888888888888874 4567777788888888898888888887777654 4456788888888888899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHH
Q 011081 371 AILVYNDMCRKGFEPEGSTIEVLIGE 396 (494)
Q Consensus 371 a~~~~~~m~~~~~~p~~~~~~~li~~ 396 (494)
|.+.|+..++. .|+..+|-.=+..
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 98888887764 5776666554433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.098 Score=46.63 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH-hHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC-YSY---SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYN 321 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 321 (494)
+...+-.....+.+.|++++|.+.|+++... -|+. ... -.+..++.+.+++++|...+++..+........-|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3444444556667899999999999999886 3333 222 456678899999999999999998874332333444
Q ss_pred HHHHHHHc--cC---------------CH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 322 TIIGGFCE--IG---------------EM---ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 322 ~li~~~~~--~g---------------~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
..+.+.+. .+ +. .+|+..|+++.+ -|-...-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH
Confidence 44444431 11 11 234444444444 333334455555544444321
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
= ..--..+...|.+.|.+..|..-++..+....-.| .......++.+|...|..++|.++...+.
T Consensus 174 l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 L----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 00112455668888999999999988777764333 34456678889999999999988877654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.021 Score=56.82 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=89.4
Q ss_pred CCCCCCHhHHHHHHHHHHcc--C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 011081 311 KNVEHDVVAYNTIIGGFCEI--G---EMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG--------DVDSAILVYND 377 (494)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~ 377 (494)
.+.+.|...|..++.+.... + +.++|..+|++..+.. +-....|..+..+|.... ++..+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34467888888888875432 2 3678888999888864 333445555444443321 12233333333
Q ss_pred HHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011081 378 MCRK-GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP 456 (494)
Q Consensus 378 m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (494)
.... ....+...|..+.......|++++|...+++.+.-. |+...|..+...+...|+.++|.+.+++... +.|
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 3222 122344566666555566788888888887655443 6777788888888888888888888887774 355
Q ss_pred CHHHH
Q 011081 457 SLEIY 461 (494)
Q Consensus 457 ~~~~~ 461 (494)
...+|
T Consensus 485 ~~pt~ 489 (517)
T PRK10153 485 GENTL 489 (517)
T ss_pred CCchH
Confidence 55454
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0042 Score=57.18 Aligned_cols=272 Identities=13% Similarity=0.064 Sum_probs=160.9
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHH--HHc--CC-
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEM--ARL--GC- 278 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~--g~- 278 (494)
.-+|+.|+......+|+.+++.+.+ ++..-...|..|.++|.-.+++++|+++...= ... |-
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-------------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk 91 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-------------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK 91 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-------------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch
Confidence 3578889999999999988776543 11222445777788888889999998875421 111 10
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCC-CCCHhHHHHHHHHHHccCC--------------------H
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEE----MRDKNV-EHDVVAYNTIIGGFCEIGE--------------------M 333 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~g~-~~~~~~~~~li~~~~~~g~--------------------~ 333 (494)
.-...+-..|.+.+--.|.+++|.-.-.+ ..+.|- ......+..+...|...|+ +
T Consensus 92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al 171 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSAL 171 (639)
T ss_pred hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHH
Confidence 00111222344444445666665533221 122220 1123345556666655543 3
Q ss_pred HHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CChhhHHHHHHHHHhcCCH
Q 011081 334 ARAEEFFREMGL----SGV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR----KGFE-PEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 334 ~~A~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~-p~~~~~~~li~~~~~~~~~ 403 (494)
+.|.++|.+=.+ .|- -.--..|..|...|.-.|+++.|+...+.-++ .|-. .....+..+..++.-.|++
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 345555543221 110 01123566666777778899999887765432 2321 2334567778888889999
Q ss_pred HHHHHHHHHHHH---hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCH
Q 011081 404 FEALDILKARVV---KFG-LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK-----GFEPSLEIYSAFIDGYMKEGNV 474 (494)
Q Consensus 404 ~~a~~~~~~~~~---~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~ 474 (494)
+.|.+.|+..+. +.| -.....+.-+|.++|.-..++++|+.++.+-+.- ...-....+.+|..+|...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 999998875331 111 1122233446778888888899999887765421 1223467788899999999999
Q ss_pred HHHHHHHHHHHHcc
Q 011081 475 EMATMLRKEMFENQ 488 (494)
Q Consensus 475 ~~a~~~~~~m~~~~ 488 (494)
++|+.+.+.-++..
T Consensus 332 ~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 332 RKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887766543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.02 Score=44.39 Aligned_cols=89 Identities=17% Similarity=0.073 Sum_probs=55.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhHHHHHHHHH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPD--CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD----VVAYNTIIGGF 327 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~ 327 (494)
..++-..|+.++|+.+|++..+.|.... ...+-.+.+.+...|++++|..+++...... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3455666777777777777777765543 2345556667777777777777777776542 22 22223334456
Q ss_pred HccCCHHHHHHHHHHHH
Q 011081 328 CEIGEMARAEEFFREMG 344 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~ 344 (494)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66777777777766554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.14 Score=50.26 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=56.5
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHH
Q 011081 103 HSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVD 182 (494)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~ 182 (494)
+....+.+-+--+..+|.+++|..+-..-+. ..| |..+- ....+.--|+..-++|.+..+.. +-+.+.
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv----~~D---W~~LA----~~ALeAL~f~~ARkAY~rVRdl~-~L~li~ 621 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVT----DTD---WRELA----MEALEALDFETARKAYIRVRDLR-YLELIS 621 (1081)
T ss_pred cccccccccchhhhhccchhhhhccccccee----cch---HHHHH----HHHHhhhhhHHHHHHHHHHhccH-HHHHHH
Confidence 3344455555566777888888654322111 111 11110 01112234556666777666622 344555
Q ss_pred HHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHH
Q 011081 183 IVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREV 222 (494)
Q Consensus 183 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (494)
-++++.+.|-.|+... +...++-.|++.+|.++|.+-
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 5677888887777654 334556667777777777654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0068 Score=55.86 Aligned_cols=270 Identities=14% Similarity=0.084 Sum_probs=154.2
Q ss_pred HHHhcCChhcHHHHHHHHHHHHhCCCCcCh----HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccc
Q 011081 167 CCLEVKNIEKIETCVDIVRMLMSRGLSVKV----STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVR 242 (494)
Q Consensus 167 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
-+++.|+ ....+.+|+..++.|-. |. ..|..|.++|.-.+++++|++....=+..... +++ ..|
T Consensus 26 RLck~gd---craGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~----lgd----klG 93 (639)
T KOG1130|consen 26 RLCKMGD---CRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL----LGD----KLG 93 (639)
T ss_pred HHHhccc---hhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH----hcc----hhc
Confidence 3778888 89999999999988855 43 34777788888889999999875432110000 000 000
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHH----HHHcCC-CcCHhHHHHHHHHHHhcCC--------------------
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVE----MARLGC-EPDCYSYSVLMAVFCEERR-------------------- 297 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~g~-~p~~~~~~~li~~~~~~g~-------------------- 297 (494)
-..+...|.+.+--.|.+++|.-.-.+ ..+.|- ......+..|...|...|+
T Consensus 94 ---EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~a 170 (639)
T KOG1130|consen 94 ---EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSA 170 (639)
T ss_pred ---cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHH
Confidence 011111122222223444443321111 111110 1122344445555544332
Q ss_pred HHHHHHHHHHHH----hCCC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCC
Q 011081 298 MREAEKLWEEMR----DKNV-EHDVVAYNTIIGGFCEIGEMARAEEFFREMG----LSGVE-SSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 298 ~~~a~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~ 367 (494)
++.|.++|.+=. +.|- -.....|..|...|.-.|+++.|+..-+.=. +-|-+ .....+..+..++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 344555554322 1120 1123456777777778889998887655322 22211 233567788888999999
Q ss_pred HHHHHHHHHHHHH----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 011081 368 VDSAILVYNDMCR----KGF-EPEGSTIEVLIGELCDKRRVFEALDILKARVVKF----GLFPTEKSYMFLIKGLCEEGK 438 (494)
Q Consensus 368 ~~~a~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~ 438 (494)
++.|.+.|+.-.. .|- ........+|...|.-..++++|+.++.+.+.-. ...-....+.+|..+|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 9999998876543 221 2244556677788888888899998877544211 112345577788999999999
Q ss_pred HHHHHHHHHHHHh
Q 011081 439 MEEALKVQAEMVG 451 (494)
Q Consensus 439 ~~~A~~~~~~m~~ 451 (494)
-++|+.+.+.-++
T Consensus 331 h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 331 HRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHH
Confidence 9998887766554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=45.33 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=24.1
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
+.|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555544432 223444444555555555555555555554444
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.037 Score=42.96 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESS--SVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555555555555555553332 22344444555555555555555555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0028 Score=43.94 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHccc
Q 011081 422 TEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG-NVEMATMLRKEMFENQV 489 (494)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~ 489 (494)
+...|..+...+...|++++|+..|.+.++.. +-+...|..+..+|.+.| ++++|++.+++.++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35667778888888888888888888888752 224677778888888888 68888888888877553
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0023 Score=44.15 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=52.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 293 CEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV 359 (494)
Q Consensus 293 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 359 (494)
.+.|++++|.++|+.+.+.. +-+...+..+..+|.+.|++++|..+++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46899999999999998874 448888889999999999999999999999887 56655555443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0033 Score=42.93 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 429 LIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+...+.+.|++++|.+.|++.++.. +-+...+..+..++...|++++|..+++++++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4456778889999999999988663 225777888888888889999999999888876553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.069 Score=49.60 Aligned_cols=248 Identities=10% Similarity=-0.024 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
+..|+..+...++..+. ++.-|..-...+...|++++|.--.++-.+..+. ....+.-.-++
T Consensus 65 Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-----------------~~k~~~r~~~c 126 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-----------------FSKGQLREGQC 126 (486)
T ss_pred HHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-----------------ccccccchhhh
Confidence 77788888888776655 4555655566666677777777666555444332 01111222222
Q ss_pred HHhcCCHhHHHHHHH---------------HHHHcC-CCcCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011081 257 FYREGAFEKVEDVWV---------------EMARLG-CEPDCYSYSVLM-AVFCEERRMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~---------------~m~~~g-~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
+...++..+|.+.++ ...... -+|...+|..+- ..+.-.|++++|..+-....+.. ....
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~ 203 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNA 203 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchh
Confidence 223333333333222 111111 123334444333 34556789999988877777653 2233
Q ss_pred HHHHHH--HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH---HH----------HHHHhcCCHHHHHHHHHHHHHC---
Q 011081 320 YNTIIG--GFCEIGEMARAEEFFREMGLSGVESSSVTFEH---LV----------NGYCRAGDVDSAILVYNDMCRK--- 381 (494)
Q Consensus 320 ~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---li----------~~~~~~g~~~~a~~~~~~m~~~--- 381 (494)
+..++. ++.-.++.+.|...|++.+..+ |+...--. +. .-..+.|++.+|.+.|.+.+..
T Consensus 204 ~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 204 EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 444444 4445788899999999988753 44433221 11 2235678899999999988764
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEK---SYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
...|+...|.....+..+.|+..+|+.--...+. .|.. .|..-..++.-.+++++|.+-++...+.
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666677777777888999988887664332 3332 2222233445567788888888887765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.12 Score=45.00 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=78.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
+.+.++..+.-.|.+.-...++.+..+.++ +.+......|++.-.+.|+.+.|...|++..+..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~----------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~ 242 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYP----------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT 242 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCC----------------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665543 3355666677777777777777777777665543
Q ss_pred CCcCHhHHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 278 CEPDCYSYSVLMA-----VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 278 ~~p~~~~~~~li~-----~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
-..|..+++.++. .|.-.+++..|...+.++...+ ..|...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 243 ~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 243 QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444432 3444566777777777666553 334444444333333456777777777777765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.004 Score=42.51 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
..+.+.|++++|.+.|+++++..|. +...|..+..++.+.|++++|..+|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-----------------NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-----------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555544332 455555555555555555555555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.07 Score=43.96 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=79.8
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhHHH
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV-EHDVVAYN 321 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~ 321 (494)
+.|++..-..|..+..+.|+..+|...|.+...--+.-|....-.+.++....+++..|...++.+.+... -.+..+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45677777777777778888888888887776544455666666677777777777777777777766421 01223344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAIL 373 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (494)
.+...|...|++.+|+.-|+..... -|+...-.-....+.+.|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 5566777777777777777776654 3333322222334455555554433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0037 Score=43.27 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG-DVDSAILVYNDMC 379 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 379 (494)
.+|..+...+.+.|++++|+..|++..+.+ +-+...|..+..+|...| ++++|++.++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444445555555555555555544443 334444444444455554 3455555544443
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.013 Score=47.70 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=41.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhh
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KGFEPEGST 389 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 389 (494)
+...++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455666666777777777777776654 55666777777777777777777777766543 466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.021 Score=51.38 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 011081 354 TFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG----STIEVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMF 428 (494)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 428 (494)
.|...+..+.+.|++++|...|+.+++.. |+. ..+..+...|...|++++|...|+..+......| ....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444455677777777777776653 332 3555566666667777777777765555442221 1233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 429 LIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
+...+...|+.++|.++|++.++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455555666777777776666654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.014 Score=51.83 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=65.5
Q ss_pred HHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCH
Q 011081 168 CLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNV 247 (494)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 247 (494)
..+.++ +++|++.|.+.++.... |.+-|..-..+|++.|.++.|.+-.+..+..++. -.
T Consensus 91 ~m~~~~---Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-----------------ys 149 (304)
T KOG0553|consen 91 LMKNKD---YQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-----------------YS 149 (304)
T ss_pred HHHhhh---HHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-----------------HH
Confidence 344555 77777777777775433 5666666677777777777777777777666544 56
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS 286 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 286 (494)
.+|..|..+|...|++++|++.|++.++. .|+-.+|-
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHH
Confidence 67777777777777777777777766653 56655554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.018 Score=45.17 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 383 FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKG 432 (494)
Q Consensus 383 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 432 (494)
..|+..+..+++.+|+..+++..|+++++......++..+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.18 Score=43.98 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH----
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT---- 322 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---- 322 (494)
....+.++.++.-.|.+.-...++.+.++..-+.+......|++.-.+.|+.+.|...|+...+..-..|..+.+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3445677777777888888888888888876566777778888888889999999999987765432334333333
Q ss_pred -HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 323 -IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 323 -li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
....|.-.+++..|...|.+....+ +.|....|.-.-+..-.|+...|++.++.|.+.. |...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhH
Confidence 3345666778888888888887765 4555555554445555678888888888888763 444444433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.16 Score=45.51 Aligned_cols=102 Identities=13% Similarity=0.187 Sum_probs=55.9
Q ss_pred cCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcC---CChhHHHHHHHHHhcCCcccc
Q 011081 154 CGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRG---KGVISGYEIYREVFGLDSDAT 230 (494)
Q Consensus 154 ~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~ 230 (494)
...+...|..|..+|...|+ +..|...|....+...+ ++..+..+..++... ....++.++|++++..++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~---~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-- 225 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGR---ASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-- 225 (287)
T ss_pred CCCCchhHHHHHHHHHHhcc---hhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc--
Confidence 34455666666666666666 66666666666553221 444444444433222 1234556666666555443
Q ss_pred cccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 231 AGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 231 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
|+.+...|...+.+.|++.+|...|+.|.+.
T Consensus 226 ---------------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 ---------------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred ---------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555555556666666666666666666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.065 Score=43.59 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD-----KNVEHDVVA 319 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 319 (494)
.+...++..+...|++++|..+...+.... +-|...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555566666667777777666666654 44566666667777777777666666665532 355555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.025 Score=50.88 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=24.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSG--VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
+..+...|...|++++|...|+.+.+.- -+.....+-.+...+...|+.++|..+|+.+++
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444321 011122223333334444444444444444444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.083 Score=47.23 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEE---RRMREAEKLWEEMRDKNVEHDVVAYNT 322 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (494)
|...|-.|...|...|+.+.|..-|....+.. .++...+..+..++... ..-.++..+|+++.... +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66667777777777777777776666665542 23444444444443332 23355666666666653 335555556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
|...+...|++.+|...|+.|...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 666666677777777777776665
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.42 Score=44.42 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
+.-|.-+...|+...|.++-.+.. .||..-|-..+.+++..++|++-.++-.. .-++.-|-..+.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 334455555666666666655543 45666666677777777777665544321 12346666677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 331 GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVY 375 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (494)
|+..+|..+...+ .+..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 7776666666552 1234556666666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.29 Score=42.39 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC--CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGC--EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
.....+.+.|++.+|...|+.+...-- +--....-.++.++.+.|+++.|...++...+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455566777777777777765410 111233445566666777777777777776554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.033 Score=43.69 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=64.6
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
..++.++|.++++.|+++....+.+..-..+.+....-.. ........|+..+..+++.+|+..|++..|+++++...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~-~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD-YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc-cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4566677777777777777777776664443321100000 122234678888888888888888888888888888765
Q ss_pred c-CCCcCHhHHHHHHHHHHhc
Q 011081 276 L-GCEPDCYSYSVLMAVFCEE 295 (494)
Q Consensus 276 ~-g~~p~~~~~~~li~~~~~~ 295 (494)
. +++.+..+|..|+.-+...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 4 6666777888777655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.46 Score=44.16 Aligned_cols=112 Identities=14% Similarity=0.059 Sum_probs=85.3
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGE 396 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 396 (494)
..+.+..|.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-.++-.. . -.+.-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 3456666777788889888888877774 68888999999999999999887765432 1 234778889999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 397 LCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
|.+.|+..+|..++.. ..+..-+..|.++|++.+|.+.-.+.
T Consensus 247 ~~~~~~~~eA~~yI~k-----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK-----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHh-----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888762 12255677888999999988775554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.47 Score=44.66 Aligned_cols=187 Identities=14% Similarity=0.022 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHcCCCc---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhHHHHHHHHHHc---cCCHH
Q 011081 264 EKVEDVWVEMARLGCEP---DCYSYSVLMAVFCEERRMREAEKLWEEMRDKN---VEHDVVAYNTIIGGFCE---IGEMA 334 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~ 334 (494)
++..+.+.+|...=-.| +..+...++-+|....+++...++.+.+...- +.-+..+--...-++.+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 34444555554431112 22333455557889999999999999987651 12233333455566677 89999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HH
Q 011081 335 RAEEFFREMGLSGVESSSVTFEHLVNGYCRA---------GDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR-VF 404 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~ 404 (494)
+|++++..+......++..+|..+...|-.. ...++|...|.+.-+. .||...--.++..+.-.|. .+
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 9999999966666688888998888776432 2356677777765443 2444332222222333332 21
Q ss_pred ---HHHHHH---HHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 405 ---EALDIL---KARVVKFG---LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 405 ---~a~~~~---~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
+..++- ...+.+.| -..+...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 112211 11222222 2234455667777777788888888888888754
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.5 Score=43.84 Aligned_cols=251 Identities=13% Similarity=0.086 Sum_probs=145.3
Q ss_pred cCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH--HHHhcCCHhHHHHHHHHHHHcCCCcCHhH-
Q 011081 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV--GFYREGAFEKVEDVWVEMARLGCEPDCYS- 284 (494)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~- 284 (494)
-.|+-..|.++-.+..+.- .-|....-.++. .-.-.|+++.|.+-|+.|.+. |....
T Consensus 96 gAGda~lARkmt~~~~~ll-----------------ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRll 155 (531)
T COG3898 96 GAGDASLARKMTARASKLL-----------------SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLL 155 (531)
T ss_pred ccCchHHHHHHHHHHHhhh-----------------hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHH
Confidence 3567777777766654321 224444444443 334569999999999999863 22221
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHH--------
Q 011081 285 -YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG-VESSSVT-------- 354 (494)
Q Consensus 285 -~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~-------- 354 (494)
...|.-..-+.|+.+.|.++-+..-..- +--...+.+.+...|..|+++.|+++++.-.+.. +.++..-
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt 234 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT 234 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Confidence 2233333456788888888777765542 2245677888888888888888888887654321 1222110
Q ss_pred -------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 355 -------------------------------FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 355 -------------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
-..-..++.+.|+..++-.+++.+-+....|+... +..+.+.|+
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gd- 309 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGD- 309 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCC-
Confidence 01223456667777777777777776655554321 112233333
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHH
Q 011081 404 FEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGY-MKEGNVEMATMLR 481 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~ 481 (494)
.+++-++..-+-..++|| ..+-..+..+-...|++..|..--+... ...|....|..|-+.- ...|+-.+++..+
T Consensus 310 -ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 310 -TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred -cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 233333322222223343 3344555666667777777776666555 3477777777776654 3448888888887
Q ss_pred HHHHHc
Q 011081 482 KEMFEN 487 (494)
Q Consensus 482 ~~m~~~ 487 (494)
-+..+.
T Consensus 387 Aqav~A 392 (531)
T COG3898 387 AQAVKA 392 (531)
T ss_pred HHHhcC
Confidence 776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.22 Score=43.13 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNV--EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSS--VTFEHLVN 360 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~ 360 (494)
.-.....+...|++++|.+.|+.+...-. +--....-.++.++.+.|++++|...|++..+.- |+. .-+...+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHH
Confidence 33445566778889999999988876521 1123455667788888899999998888887652 222 22222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 361 GYCRAGDVDSAILVYNDMCRKGFEP---EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG 437 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 437 (494)
+.+......... ....+... -...+..++.-|-...-..+|...+.. +... . ...--.+...|.+.|
T Consensus 86 g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~-l~~~---l-a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 86 GLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAE-LRNR---L-AEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHH-HHHH---H-HHHHHHHHHHHHCTT
T ss_pred HHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHH-HHHH---H-HHHHHHHHHHHHHcc
Confidence 222211111110 00000000 112344555555555666666555442 2110 0 111223667899999
Q ss_pred CHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 011081 438 KMEEALKVQAEMVGKGFEPS----LEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.+..|..-++.+++. -|+ ......++.+|.+.|..+.+..
T Consensus 156 ~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999986 444 3456778889999998875543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0098 Score=41.67 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=30.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 432 GLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.|.+.+++++|.++++.+++.. +.+...|.....++.+.|++++|.+.++...+.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4455555555555555555431 22344444455555555555555555555555444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.43 Score=45.86 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=23.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 358 LVNGYCRAGDVDSAILVYNDMCRKGFE-PEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
+..++.+.|+.++|.+.|++|.+.... -.......|+.++...+.+.++..++.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 333444445555555555555443211 112233444455555555555544444
|
The molecular function of this protein is uncertain. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.27 Score=38.15 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=83.1
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEAL 407 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 407 (494)
.-.|..++..++..+...+ .+..-+|.+|--....-+-+-..++++.. |--.|.. ..|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHH
Confidence 3457778888888877653 34455666665555444444444444444 3222322 234444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 408 DILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 408 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
..+- .+ ..+...+...++.+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++++.-++
T Consensus 77 ~C~~-~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 77 ECYA-KR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHH-HT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHH-Hh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4432 11 134455677788888999999999999998764 3778888888999999999999999999999998
Q ss_pred ccc
Q 011081 488 QVR 490 (494)
Q Consensus 488 ~~~ 490 (494)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.03 Score=39.14 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=23.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444432 23333444444444444444444444444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.1 Score=42.16 Aligned_cols=161 Identities=9% Similarity=0.029 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcC---CCcCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLG---CEPDCYSYSVLMAVFCE---ERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
.++-+|....+++..+++++.|.... +.-....-....-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777777777777777776541 11112222233344455 6777777777777555444667777777776
Q ss_pred HHHcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HH-HHHCCC---CC
Q 011081 326 GFCEI---------GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDV----DSAILVY---ND-MCRKGF---EP 385 (494)
Q Consensus 326 ~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~---~~-m~~~~~---~p 385 (494)
.|-.. ...++|...|.+.-+. .||..+-..++..+...|.. .+..++- .. +.+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 65321 1355666666665443 24433322222223333321 1223332 11 112332 23
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
|-..+..++.+..-.|+.++|.+..+++.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555666777777777777777776444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.015 Score=41.32 Aligned_cols=60 Identities=25% Similarity=0.419 Sum_probs=25.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLS----GV-ESS-SVTFEHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 378 (494)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443321 10 011 233444444445555555555544443
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.1 Score=42.00 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=108.9
Q ss_pred cCHHHHHHHH-HHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHhH--
Q 011081 245 PNVHTFNALM-VGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAV--FCEERRMREAEKLWEEMRDKNVEHDVVA-- 319 (494)
Q Consensus 245 p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~-- 319 (494)
|.-.+|-.+- .++.-.|++++|...--..++.. ....+..++++ +.-.++.+.|...|++.+..+ |+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 5455555543 45566788999888777766543 12233334433 344678889999998888764 33221
Q ss_pred -----------HHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 320 -----------YNTIIGGFCEIGEMARAEEFFREMGLS---GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 320 -----------~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
+..=.+-..+.|++..|.+.|.+.+.. .+.++...|........+.|+.++|+.--++..+.+
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--- 317 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--- 317 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---
Confidence 222234456889999999999998765 345566667777777888999999999888877653
Q ss_pred ChhhHHHH--HHHHHhcCCHHHHHHHHHHHHHhCC
Q 011081 386 EGSTIEVL--IGELCDKRRVFEALDILKARVVKFG 418 (494)
Q Consensus 386 ~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~ 418 (494)
+......+ ..++.-.+++++|.+-+++.++...
T Consensus 318 ~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 12222222 2444556889999999888776543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.023 Score=40.35 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----C-CCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARL----G-CEPD-CYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
..+|+.+...|...|++++|+..|++..+. | -.|+ ..++..+...|...|++++|++++++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666666777777777777776665533 1 0111 3345555566666666666666665543
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.22 Score=40.58 Aligned_cols=88 Identities=8% Similarity=-0.081 Sum_probs=59.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS 370 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (494)
-+...|++++|..+|.-+...+ .-|..-|..|..++-..+++++|+..|......+ .-|...+-.+..+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 3445778888888887776654 2345556666777777777888887777665544 2344445556677777777777
Q ss_pred HHHHHHHHHH
Q 011081 371 AILVYNDMCR 380 (494)
Q Consensus 371 a~~~~~~m~~ 380 (494)
|...|...++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777766
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.24 Score=47.35 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=57.8
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC----YSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
..+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|++++|...+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 447889999999999999999999999998876 4654 35889999999999999999999999875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.3 Score=47.23 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVV--AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA 365 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 365 (494)
.+.+|-.+|+|.+|..+..++... .+.. +-..|+.-+...+++-+|-++..+.... ..-.+..|++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 445566666666666666555422 1111 1245666666677776776666665432 12234455566
Q ss_pred CCHHHHHHHHHHH
Q 011081 366 GDVDSAILVYNDM 378 (494)
Q Consensus 366 g~~~~a~~~~~~m 378 (494)
..+++|+.+-...
T Consensus 1040 ~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1040 KEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHHHhc
Confidence 6677776665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.29 Score=46.76 Aligned_cols=65 Identities=3% Similarity=-0.146 Sum_probs=34.0
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcCh--HhHHHHHHHHHcCCChhHHHHHHHHHhc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKV--STCNALIWEVSRGKGVISGYEIYREVFG 224 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (494)
++..++.+..+|.+.|+ +++|+..|++.++....... .+|..+..+|...|+.++|.+.++++++
T Consensus 74 ~a~a~~NLG~AL~~lGr---yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGR---VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555565 66666666555553322110 2355555555555666666555555543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.64 E-value=2.9 Score=42.37 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=73.8
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 314 EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
.-...+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.+. ...-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3444455666666677777777777776665 5777777777777777777777666555442 13345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 394 IGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAE 448 (494)
Q Consensus 394 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (494)
+.+|.+.|+.++|.+++- .. ++. .-...+|.+.|++.+|.++-.+
T Consensus 751 Ve~c~~~~n~~EA~KYip-rv------~~l---~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIP-RV------GGL---QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhh-cc------CCh---HHHHHHHHHhccHHHHHHHHHH
Confidence 677778888888877765 11 111 1456677777777777665443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.6 Score=39.17 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=86.8
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY 283 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 283 (494)
......|++.+|..+|.......+. +...--.+..+|...|+.+.|..++..+...--.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-----------------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~ 204 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-----------------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH 204 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-----------------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH
Confidence 3456678888888888888776544 45566677888888888888888888876542121222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV-ESSSVTFEHLVNGY 362 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~ 362 (494)
....-|..+.+.....+...+-.+.-.. +-|...-..+...|...|+.+.|.+.+-.+..++. .-|...-..++..+
T Consensus 205 ~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f 282 (304)
T COG3118 205 GLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELF 282 (304)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 2223344444444444444444444433 33666666777777777888877777666655421 23334445555555
Q ss_pred HhcCC
Q 011081 363 CRAGD 367 (494)
Q Consensus 363 ~~~g~ 367 (494)
.-.|.
T Consensus 283 ~~~g~ 287 (304)
T COG3118 283 EAFGP 287 (304)
T ss_pred HhcCC
Confidence 55553
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.1 Score=41.21 Aligned_cols=202 Identities=9% Similarity=0.001 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHH-------HHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVW-------VEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK-NVEH--- 315 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~-------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~--- 315 (494)
..++..+..+.++.|.+++++..- .+..+. ..--..|-.+.+++-+.-++.+++.+-..-... |..+
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds--~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~ 120 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS--DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL 120 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc
Confidence 345666667777777777655432 111111 111234555666666666666666655544332 2222
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGLSG-----VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR----KGFEPE 386 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~ 386 (494)
.....-++..++...+.++++++.|+...+-. .-.....+..|...|.+..++++|.-+.....+ .++.--
T Consensus 121 ~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~ 200 (518)
T KOG1941|consen 121 GGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW 200 (518)
T ss_pred cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch
Confidence 11233446666777778888888888765421 111234677788888888888888766655433 232222
Q ss_pred hhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 387 GSTI-----EVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS----YMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 387 ~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
..-| ..+.-++...|++..|.+.-++.++-.-..-|..+ ...+.+.|-..|+.+.|+.-|++..
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2222 23345566778888888877766653322234333 4456677888888888887776654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.12 Score=45.52 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=77.6
Q ss_pred ccCHHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC----------------CHHHHH
Q 011081 244 RPNVHTFNALMVGFYRE-----GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER----------------RMREAE 302 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~ 302 (494)
+.|-.+|-+++..|.+. +.++-....++.|.+-|+..|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45788888888877654 567777778889999999999999999998865533 235688
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCH-HHHHHHHHHHH
Q 011081 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM-ARAEEFFREMG 344 (494)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 344 (494)
+++++|...|+.||-.+-..|++++.+.+.. .+..++.-.|.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999999999999999999999999887753 33444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.52 E-value=2.1 Score=42.45 Aligned_cols=185 Identities=12% Similarity=0.094 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccc--ccCHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRV--RPNVHTFNALM 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~li 254 (494)
+.-+..+|.-+... ++| ....++....-.|+-+.+++.+.+..+...- .+. .--.-.|+.++
T Consensus 173 v~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i------------~~~la~L~LL~y~~~~ 236 (468)
T PF10300_consen 173 VYFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENI------------RSPLAALVLLWYHLVV 236 (468)
T ss_pred HHHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCc------------chHHHHHHHHHHHHHH
Confidence 55556666666653 232 3446777778888999999998887553211 000 11234466666
Q ss_pred HHHHh----cCCHhHHHHHHHHHHHcCCCcCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhHHHHHHHH
Q 011081 255 VGFYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVL-MAVFCEERRMREAEKLWEEMRDKN---VEHDVVAYNTIIGG 326 (494)
Q Consensus 255 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~ 326 (494)
..++. ..+.+.|.+++..+.+. -|+...|... .+.+...|++++|.+.|+...... .+.....+--+.-.
T Consensus 237 ~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 237 PSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC 314 (468)
T ss_pred HHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH
Confidence 65554 35678899999999876 5776665433 355677899999999999765321 01233445566777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN-GYCRAGDV-------DSAILVYNDMCR 380 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~-------~~a~~~~~~m~~ 380 (494)
+.-.++|++|.+.|..+.+.. .-+..+|.-+.. ++...|+. ++|.++|.++..
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888999999999999998764 333444444433 34556777 888888887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.13 Score=45.34 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK-MEEALKVQAEMV 450 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 450 (494)
++++++ .|+..|+.||..+-..|++++.+.+- ..+..++...|-
T Consensus 142 ~I~vLe-qME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 142 AIKVLE-QMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHH-HHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 566666 67888888888888888888877664 334444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.8 Score=39.86 Aligned_cols=130 Identities=16% Similarity=0.328 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHhHHHHHHHHHHccCCH
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE--ER----RMREAEKLWEEMRDKNV---EHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~ 333 (494)
+++.+.+++.|.+.|+..+..+|-+..-.... .. ....|..+|+.|++... .++...+.+|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55678899999999999888777664433333 22 34678999999988632 3455566666554 33433
Q ss_pred ----HHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 334 ----ARAEEFFREMGLSGVESSS--VTFEHLVNGYCRAGD--VDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 334 ----~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
+.++.+|+.+...|...+- ...+.++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 5677788888887765543 233333333322222 447788888888888887777665543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.42 E-value=4.7 Score=43.27 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=68.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 398 (494)
.|.+..+.+...+.+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++.... .--..+-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH
Confidence 344455555566777777777765432 1235677888888888888887764321 101112256777778
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
..++.-+|-++..+...+ +.-.+..|++...+++|.++....
T Consensus 1011 e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 888888888877643322 233445566667777777766544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.88 Score=43.11 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=55.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSG-VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST-IEVLIGEL 397 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~ 397 (494)
|...++...+..-.+.|..+|-+..+.| +.+++..+++++..++. |+...|..+|+--... -||... .+..+..+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 4444444444444555555555555544 34444555555554433 3444455555433322 122222 22333444
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
...++-..|..+|+..+.+..-.--...|..+|.-=..-|++..+..+=++|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 44455555555554332221100112345555554444555555444444444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.44 Score=44.53 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHc-----CCCc---------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARL-----GCEP---------DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
.-.+.|.+.|++..|..-|++.... +..+ -..++..|.-.|.+.+++..|++.-+..+..+ ++|+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3346788889999998888875432 1111 11233444445555555555555555555443 3444
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
...--=..+|...|+++.|...|+++++.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44444555555555555555555555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.2 Score=38.94 Aligned_cols=157 Identities=10% Similarity=-0.052 Sum_probs=101.1
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhHHHHHHHHHHccCCHHH
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK---NVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
..|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... +++.....-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 357777777778877765 3556667777777888888888877777777543 322223333444455667888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK---GFEPEGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
|++.-++..+.+ +.|...-.+....+...|+..++.++..+-... +--.-..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888888877765 566667777777777888888888776653221 1000111222333345556888888888887
Q ss_pred HHHhC
Q 011081 413 RVVKF 417 (494)
Q Consensus 413 ~~~~~ 417 (494)
.+-+.
T Consensus 273 ei~k~ 277 (491)
T KOG2610|consen 273 EIWKR 277 (491)
T ss_pred HHHHH
Confidence 66543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.29 E-value=2.8 Score=39.96 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHH----HHHHh---cCCHHHHHHHHHHHHHhCCCCCCHH----HHHHHHHH--HH
Q 011081 368 VDSAILVYNDMCRKGFEPEGSTIEVLI----GELCD---KRRVFEALDILKARVVKFGLFPTEK----SYMFLIKG--LC 434 (494)
Q Consensus 368 ~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~--~~ 434 (494)
-++|+++++..++-. .-|..+-|.+. .+|.+ ...+.+-+++- ..+.+.|+.|-.. .-|.|.++ +.
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe-~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLE-DFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 667777777776632 12333333222 22222 22333344433 3566778776433 44555444 45
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 435 EEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
..|++.++.-.-..+. .+.|++.+|.-+.-+.....++++|..++..+-
T Consensus 474 sqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred hcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 6789998876666655 478999999988888888999999999987653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.2 Score=35.68 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=19.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA 365 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 365 (494)
.++..+.+.+.......+++.+...+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444444445555555444443 23444444555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.9 Score=37.91 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGKGFEPS---LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.+.+-|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|...|..++|.+.-+-+..+-+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 4556788999999999999999886 3333 34455566788899999998888666555433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.1 Score=34.84 Aligned_cols=131 Identities=12% Similarity=0.168 Sum_probs=55.3
Q ss_pred hcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 259 REGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 259 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
-.|..++..++..+..... +..-||-+|--....-+-+...++++.+-+. .|... +|+......
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISK----------CGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-----------S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCchh----------hcchHHHHH
Confidence 3577778888888877642 4555666665555554545555555544321 12221 222222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 339 FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
.+-.+ ..+.......+......|+-++-.+++.++.+.+ .++......+..+|.+.|+..++-+++.
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 22111 1112223333444455555555555555554322 3444455555555555555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.58 Score=38.18 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
-.....+...|++++|..+|.-+...+ .-+..-+..|...+-..+++++|...|......+ .-|...+--...+|...
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHh
Confidence 344455678999999999999987754 2355556677777777899999999999876654 34666667788999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 011081 331 GEMARAEEFFREMGLS 346 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~ 346 (494)
|+.+.|...|+...+.
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999988763
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.3 Score=40.74 Aligned_cols=131 Identities=15% Similarity=0.241 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--cCC----HHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC-
Q 011081 298 MREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE--IGE----MARAEEFFREMGLSGV---ESSSVTFEHLVNGYCRAGD- 367 (494)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~----~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~- 367 (494)
+++...+++.|.+.|+..+..+|-+....... ..+ ..+|..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888887777663333322 222 4578888999987632 2344555555544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 368 ---VDSAILVYNDMCRKGFEPEGS--TIEVLIGELCDKRR--VFEALDILKARVVKFGLFPTEKSYMFLIK 431 (494)
Q Consensus 368 ---~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 431 (494)
.+.+..+|+.+.+.|+..+.. ....++..+..... +..+.++++ .+++.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~-~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN-ALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH-HHHHcCCccccccccHHHH
Confidence 356777888888877765432 33333332222222 345666666 7778888888877765543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.53 Score=41.68 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 392 VLIGELCDKRRVFEALDILKARVVKFGLFPTE-KSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 392 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.|...+...|++++|..+|....+..+-.|.. ..+--|.....+.|+.++|..+|++..+.
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34444445555555555554444444333322 34444445555555555555555555543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.96 E-value=4.9 Score=40.89 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 352 SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIK 431 (494)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 431 (494)
.-+.+--+.-+...|+-.+|.++-.+.. -||...|-.-+.+++..+++++-+++-++ . ..+.-|...+.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks-k------ksPIGy~PFVe 752 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS-K------KSPIGYLPFVE 752 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc-c------CCCCCchhHHH
Confidence 3444555666677788888888877653 57888888889999999999988777542 1 22556888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 432 GLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRK 482 (494)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 482 (494)
+|.+.|+.++|.+++.+.- | .. -...+|.+.|++.+|.++.-
T Consensus 753 ~c~~~~n~~EA~KYiprv~--~---l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG--G---LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccC--C---hH----HHHHHHHHhccHHHHHHHHH
Confidence 9999999999999988663 1 11 56788889999988887643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.85 E-value=3.8 Score=39.10 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 011081 353 VTFEHLVNGYCRAGDVDSAILVYNDMCRKG-FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSY-MFLI 430 (494)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~li 430 (494)
..|...+..-.+..-++.|..+|-+..+.| +.+++..+++++..++ .|+..-|..+|+--|... ||...| +-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 445667777777777889999999999988 5678888999998766 677888999998777765 444333 4566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 431 KGLCEEGKMEEALKVQAEMVGKGFEPS--LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
..+.+.++-+.|..+|+..+++ +..+ ..+|..+|+--..-|+...+..+-+.|.+.-+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 7778889999999999976654 3334 57899999988899999888888777776544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.4 Score=35.06 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=36.8
Q ss_pred HccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSG--VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 398 (494)
.+.|++++|.+.|+.+..+- -+-....-..++.+|.+.+++++|...+++.++....-..+-|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 45566666666666665541 022334445556666666666666666666666443222233444444433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.1 Score=34.81 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=57.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCC
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT---FEHLVNGYCRAGD 367 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~ 367 (494)
+.+..|+++.|++.|.+.+..- +.....||.-..++.-.|+.++|++=+++..+..-..+... |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556677777777777766552 34666777777777777777777777777665421222222 2233345666777
Q ss_pred HHHHHHHHHHHHHCC
Q 011081 368 VDSAILVYNDMCRKG 382 (494)
Q Consensus 368 ~~~a~~~~~~m~~~~ 382 (494)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777776665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.81 E-value=1 Score=34.93 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=71.0
Q ss_pred HHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh-
Q 011081 205 EVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY- 283 (494)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~- 283 (494)
+++..|+.+.|++.|.+.+...|. ....||.-..++.-.|+.++|++=+++..+..-.....
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-----------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta 114 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-----------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA 114 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-----------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH
Confidence 567889999999999999876543 78889999999999999999999999887753122222
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 284 --SYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 284 --~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
.|.--...|...|+-+.|..=|+..-+.|
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 33444456778899999999898887776
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.7 Score=34.85 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=34.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (494)
++..+.+.+.......+++.+...+ ..+....+.++..|++.+ .++..+.++. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3344444444444444444444443 234444444444444432 2222333321 1112223334455555555
Q ss_pred HHHHHHHHHHH
Q 011081 368 VDSAILVYNDM 378 (494)
Q Consensus 368 ~~~a~~~~~~m 378 (494)
++++..++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.78 Score=42.95 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCC---------CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDK-----NVE---------HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~-----g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
.+.|.+.|++..|..-|+..... +.. .-..+++.+..+|.+.+++..|++.-...++.+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34678899999999888876532 111 122345666667777777777777777766665 566666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
.---..+|...|+++.|...|+.+++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 666666677777777777777777664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.6 Score=43.33 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=57.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLE------ 459 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------ 459 (494)
+..+...+...+.+...+..|-++|.+ |. | ...+++.....+++.+|..+-+..-+ +.||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k-~g------D---~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLK-MG------D---LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHH-hc------c---HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHH
Confidence 344444455555556666667777763 21 1 24566777777888888877776653 344421
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 460 -----IYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 460 -----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
-|..--.+|.+.|+..+|.++++++....+
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 233344578888999999999988876543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.72 E-value=2 Score=35.40 Aligned_cols=136 Identities=14% Similarity=0.204 Sum_probs=65.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 011081 338 EFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKF 417 (494)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 417 (494)
++++.+.+.+++|+...+..+++.+.+.|++.. +..++..++-+|.......+-.+. +....+.++--+|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 444445555666666666666666666665433 333344445555444443332222 22222333322233221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 011081 418 GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 418 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
+ ..+..++..+...|++-+|.++....... +......++.+..+.+|...-..+++-..+++
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1 13455556666667776666666654211 11222345555556666555555555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=2.8 Score=36.33 Aligned_cols=225 Identities=17% Similarity=0.073 Sum_probs=137.2
Q ss_pred cCCHhHHHHHHHHHHHcCCC-cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCCHHHHH
Q 011081 260 EGAFEKVEDVWVEMARLGCE-PDCYSYSVLMAVFCEERRMREAEKLWEEMRDK-NVEHDVVAYNTIIGGFCEIGEMARAE 337 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (494)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555666555544321 12456667777777778888777777776642 22445566667777777777788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 338 EFFREMGLSGVESSSVTFEHLVN-GYCRAGDVDSAILVYNDMCRKGF--EPEGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
+.+.........+ ......... .+...|++++|...+........ ......+......+...++.+.+...+...+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8887777653222 122222223 67778888888888888755221 1123333344444566778888888877555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 011081 415 VKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 415 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 488 (494)
...... ....+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+.+..+..
T Consensus 195 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 443210 3556667777777777888888888887754 343 4444445555556667777777777766543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.43 E-value=3.6 Score=37.03 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=60.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS 370 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (494)
.....|++.+|..+|+...... +-+...--.++.+|...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455677777777777666553 224455566677777777777777777766443211111111222333333333333
Q ss_pred HHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 011081 371 AILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVK 416 (494)
Q Consensus 371 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 416 (494)
...+-...-. .| |...-..+...+...|+.++|++.+-..+++
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333222 22 3444444555555566666666555544443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.5 Score=42.85 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=25.9
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
+...|..|.....+.|+++-|++.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 34445555555555555555555544432 13334444444455444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=3.7 Score=39.57 Aligned_cols=164 Identities=8% Similarity=-0.003 Sum_probs=106.8
Q ss_pred hHH--HHHHHHHHhc-----CCHHHHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHc---------cCCHHHHHHHHHHHH
Q 011081 283 YSY--SVLMAVFCEE-----RRMREAEKLWEEMRDK-NVEHD-VVAYNTIIGGFCE---------IGEMARAEEFFREMG 344 (494)
Q Consensus 283 ~~~--~~li~~~~~~-----g~~~~a~~~~~~m~~~-g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 344 (494)
..| ..++.+.... ...+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 2346788888888722 22443 4444444443332 234556777888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 011081 345 LSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE-GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTE 423 (494)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 423 (494)
+.+ +-|......+..+....++++.|..+|++....+ || ..+|......+.-.|+.++|.+.+++.++-...+.-.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 776 6788888888888888888999999999988764 43 4455555555677899999999998767654443344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 424 KSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
......++.|+.. .++.|.+++.+-.
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 4444555566654 5788888876543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.5 Score=34.87 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=55.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcC--CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLG--CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
-.....+.|++++|.+.|+.+...- -+-...+--.|+.+|.+.+++++|...+++.++.......+-|-..+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3445567899999999999887751 12233456678889999999999999999998875433345566666665544
Q ss_pred C
Q 011081 331 G 331 (494)
Q Consensus 331 g 331 (494)
.
T Consensus 96 ~ 96 (142)
T PF13512_consen 96 E 96 (142)
T ss_pred H
Confidence 3
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.38 E-value=2 Score=42.06 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHCCChhHHHHHH
Q 011081 106 SSYATIIHILSRARLIGPARDVI 128 (494)
Q Consensus 106 ~~~~~li~~~~~~~~~~~a~~~~ 128 (494)
.-.+.+++.+-+.|..+.|+.+.
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHS
T ss_pred hHHHHHHHHHHHCCCHHHHHhhc
Confidence 34666667676777666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.84 Score=40.47 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-HHHHHH
Q 011081 389 TIEVLIGELCDKRRVFEALDILKARVVKFG---LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK-GFEPS-LEIYSA 463 (494)
Q Consensus 389 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-~~~~~~ 463 (494)
.|+.-+.. .+.|++..|.+.|...++... ..|+ .+-.|..++...|++++|..+|..+.+. +-.|. +..+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 46655554 456778888888887776542 2233 4456889999999999999999999875 22232 467778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 464 FIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 464 li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
|..+..+.|+.++|...|+++.+.-|.-
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 8888999999999999999999876653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.29 E-value=3.9 Score=40.53 Aligned_cols=163 Identities=12% Similarity=0.055 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCC-CCcCh------HhHHHHHHHHHc----CCChhHHHHHHHHHhcCCc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRG-LSVKV------STCNALIWEVSR----GKGVISGYEIYREVFGLDS 227 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 227 (494)
-.+..+++..+=.|+ -+.+++.+....+.+ +. .+ ..|+..+..++. ..+.+.|.++++.+...
T Consensus 189 p~~~kll~~vGF~gd---R~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-- 262 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGD---RELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-- 262 (468)
T ss_pred HHHHHHHhhcCcCCc---HHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--
Confidence 344556666667777 888888888776633 22 22 234455544443 34678899999999764
Q ss_pred ccccccccccccccccccCHHHHHHHH-HHHHhcCCHhHHHHHHHHHHHcC---CCcCHhHHHHHHHHHHhcCCHHHHHH
Q 011081 228 DATAGIGKDVKRVVRVRPNVHTFNALM-VGFYREGAFEKVEDVWVEMARLG---CEPDCYSYSVLMAVFCEERRMREAEK 303 (494)
Q Consensus 228 ~~~~~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~ 303 (494)
-|+...|...- +.+...|++++|++.|++..... -+.....+--+.-.+.-..+|++|.+
T Consensus 263 ----------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 263 ----------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred ----------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 45666665543 56677899999999999765421 11223345556667888999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHH-HHHHccCCH-------HHHHHHHHHHH
Q 011081 304 LWEEMRDKNVEHDVVAYNTII-GGFCEIGEM-------ARAEEFFREMG 344 (494)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~ 344 (494)
.|..+.+.. .-+..+|.-+. .++...|+. ++|.++|.+..
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999998863 22333333332 334456777 77888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=4.6 Score=39.01 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=92.5
Q ss_pred HhH--HHHHHHHHcCC-----ChhHHHHHHHHHh---cCCcccccccccccccccccccCHHHHHHHHHHHHh-------
Q 011081 197 STC--NALIWEVSRGK-----GVISGYEIYREVF---GLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR------- 259 (494)
Q Consensus 197 ~~~--~~ll~~~~~~~-----~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~------- 259 (494)
..| ..++++..... ..+.|+.+|.+.. +.+|. ....|..+..++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-----------------~a~a~~~lA~~h~~~~~~g~~ 314 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-----------------KTECYCLLAECHMSLALHGKS 314 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-----------------cHHHHHHHHHHHHHHHHhcCC
Confidence 445 55555554422 3568888999997 54433 24444444333322
Q ss_pred --cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011081 260 --EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAE 337 (494)
Q Consensus 260 --~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (494)
..+..+|.++-+...+.+ .-|......+..+..-.++++.|..+|++....+ +....+|........-+|+.++|.
T Consensus 315 ~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 315 ELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred CchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 223455666777777665 4566666667776677777888888888877763 223445555555556678888888
Q ss_pred HHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 338 EFFREMGLSGVESSS---VTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 338 ~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
+.+++..+. .|.. ......++.|+..+ .++|..+|-+
T Consensus 393 ~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 393 ICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 888875543 2322 22233344555443 4556665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.80 E-value=6.9 Score=40.44 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLM----AVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
...-+...++...++-|+.+-+.- + .|..+...++ +-+.+.|++++|...|-+-... ++| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 344566667777777777766432 2 2333333333 3455678999988877766543 122 23566
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
-|....+..+-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 66677777777788888888874 455566778888988888887776666543 3321 1123445566666677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
|..+-.+ .+ -+......+ +-..|++++|++++..+
T Consensus 482 a~~LA~k----~~--~he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATK----FK--KHEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHH----hc--cCHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7665431 11 123333333 33567788888887765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.68 Score=41.68 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=40.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH--
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR-- 275 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 275 (494)
++..++..+..+|+.+.+.+.+++....++. +...|..+|.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-----------------~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-----------------DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-----------------chHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 3445555555566666666666666555443 555666666666666666666666655543
Q ss_pred ---cCCCcCHhHHH
Q 011081 276 ---LGCEPDCYSYS 286 (494)
Q Consensus 276 ---~g~~p~~~~~~ 286 (494)
.|+.|...+..
T Consensus 218 ~edlgi~P~~~~~~ 231 (280)
T COG3629 218 AEELGIDPAPELRA 231 (280)
T ss_pred hhhcCCCccHHHHH
Confidence 24555444433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.83 Score=41.11 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44445555555555555555555554443 3344455555555555555555555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.14 Score=29.92 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 461 YSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 461 ~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
|..|...|.+.|++++|++++++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.33 Score=29.85 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=9.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
.+...|.+.|++++|.++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.22 E-value=6.6 Score=35.91 Aligned_cols=162 Identities=11% Similarity=0.090 Sum_probs=79.6
Q ss_pred HcCCChhHHHHHHHHHhcCCccccccccccccccccccc------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----
Q 011081 207 SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP------NVHTFNALMVGFYREGAFEKVEDVWVEMARL---- 276 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 276 (494)
.+.|+.+.|..++.+....... ..| ....||.-...+.+..++++|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~--------------~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~ 69 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNS--------------LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP 69 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhc--------------CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh
Confidence 3567777777777776432200 122 2333454444444443777777776665432
Q ss_pred ----CCCcCH-----hHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 277 ----GCEPDC-----YSYSVLMAVFCEERRMR---EAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 277 ----g~~p~~-----~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
...|+. .+...++.+|...+..+ +|.++.+.+.... .-...++-.-+..+.+.++.+.+.+.+.+|.
T Consensus 70 ~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 70 GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 112222 24455666666655544 3444444553332 2224444455555555677777777777776
Q ss_pred hCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCC
Q 011081 345 LSGVESSSVTFEHLVNGY---CRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 345 ~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
..- .-....+..++..+ ... ....|...++.++...+.|
T Consensus 149 ~~~-~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 149 RSV-DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred Hhc-ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCC
Confidence 652 21223344433333 222 2234555555554443433
|
It is also involved in sporulation []. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.21 E-value=8.9 Score=37.38 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
...+++..+.....+.-.+.+-.+|...| .+-..|..++++|..+ ..++-..+++++.+.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33444444444444444455555554443 2444445555555544 334444445444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.07 E-value=11 Score=38.16 Aligned_cols=246 Identities=14% Similarity=0.054 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
.+|+.+...++.... +++|.+.|..-.. . ...+.++.+..++++-..+.+.+
T Consensus 797 ~A~r~ig~~fa~~~~---We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~L---------------- 848 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMME---WEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTL---------------- 848 (1189)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhc----------------
Confidence 456666666666665 6666666654321 1 12344555544444443333333
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
+-+....-.|..++...|..++|.+.|-+- + .| ...+..|...++|.+|.++-+...- |.+.
T Consensus 849 -----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~ 910 (1189)
T KOG2041|consen 849 -----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQ 910 (1189)
T ss_pred -----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHH
Confidence 224555556667777777777776665332 2 12 1244556666666666655543321 1111
Q ss_pred H--------------HHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHH----HHHHH-HHHH----------Hhc
Q 011081 319 A--------------YNTIIGGFCEIGEMARAEEFFREMGLS----GVESSSV----TFEHL-VNGY----------CRA 365 (494)
Q Consensus 319 ~--------------~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~----~~~~l-i~~~----------~~~ 365 (494)
+ .---|..+.+.|++=+|-+++.+|.+. +.++-.. ...++ +.-+ -+.
T Consensus 911 tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~ 990 (1189)
T KOG2041|consen 911 TLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKH 990 (1189)
T ss_pred HHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 1 012345566677666666666666432 3322211 11111 1111 123
Q ss_pred CCHHHHHHHHHHHHHC-------CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 366 GDVDSAILVYNDMCRK-------GFEP--EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEE 436 (494)
Q Consensus 366 g~~~~a~~~~~~m~~~-------~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 436 (494)
|..++|..+++.-.-. +..- ....|-.|.+--...|.++.|++.--..-.-..+-|....|+.+.-+-|..
T Consensus 991 g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 991 GFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred CcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 5555565544432211 0111 122333444445567888888776432222234567777888776666655
Q ss_pred CCHHHHHHHHHHHH
Q 011081 437 GKMEEALKVQAEMV 450 (494)
Q Consensus 437 g~~~~A~~~~~~m~ 450 (494)
..+...-+.|-++.
T Consensus 1071 raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1071 RAFGTCSKAFMKLE 1084 (1189)
T ss_pred hhhhhhHHHHHHHH
Confidence 55555555554444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.05 E-value=5.7 Score=34.73 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
|.-...+|....++++|...+.+..+- .+-+...|. ..+.++.|.-+.++|.+. +--+..|+--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444455677777888887766665431 122222221 122334444444444433 1123344555556666
Q ss_pred cCCHHHHHHHHHHH
Q 011081 330 IGEMARAEEFFREM 343 (494)
Q Consensus 330 ~g~~~~A~~~~~~m 343 (494)
+|.++.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 66666555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.31 Score=29.97 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=24.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcc
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSD 228 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (494)
++..+...|...|++++|.++|+++++..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4667777888888888888888888776654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.87 E-value=7.5 Score=35.67 Aligned_cols=151 Identities=11% Similarity=0.016 Sum_probs=105.7
Q ss_pred cCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH-
Q 011081 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS- 286 (494)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~- 286 (494)
..|+..+|...++++++.-| .|..+++-.=.+|.-.|+...-...+++.... ..+|...|.
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-----------------tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sY 176 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-----------------TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSY 176 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-----------------hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHH
Confidence 45788888888888876543 38888888888999999999988888888754 134443333
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCCCHHHHHHHH
Q 011081 287 ---VLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG----VESSSVTFEHLV 359 (494)
Q Consensus 287 ---~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li 359 (494)
.+.-++..+|-+++|++.-++..+.+ +.|..+-.++...+--.|++.++.++..+-...= +.....-|.. .
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-A 254 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-A 254 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-H
Confidence 23334556899999999988888765 5577777888888888999999998876543221 0111111222 2
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 011081 360 NGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m 378 (494)
-.+...+.++.|+++|+.-
T Consensus 255 l~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HhhhcccchhHHHHHHHHH
Confidence 3344558899999999753
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.85 E-value=6.1 Score=34.55 Aligned_cols=207 Identities=13% Similarity=0.018 Sum_probs=105.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.|..-..+|...+++++|...+.+..+. .+-|...|.+ ...++.|.-+.++|.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-----------------yEnnrslfhA-------AKayEqaamLake~~kls 88 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-----------------YENNRSLFHA-------AKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-----------------HHhcccHHHH-------HHHHHHHHHHHHHHHHhH
Confidence 3444556777778888888777766421 1223333332 223455666666665432
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC---C--CCCCH
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS---G--VESSS 352 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~~~~ 352 (494)
--+..|+--...|..+|..+.|-..++..-+. ..+.++++|+++|++...- + ...-.
T Consensus 89 --Evvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 89 --EVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred --HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 12345566667777888877776666654331 1223344444444443211 0 00111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CCCHHH
Q 011081 353 VTFEHLVNGYCRAGDVDSAILVYNDMCR----KGFEPE-GSTIEVLIGELCDKRRVFEALDILKARVVKFGL--FPTEKS 425 (494)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~ 425 (494)
..+..+-..+.+...+++|-..+..-.. -.--++ ...|...|-.+....++..|...++......++ .-+..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 2233444555666666665554433211 111111 123555555666677888888887743222221 234456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 011081 426 YMFLIKGLCEEGKMEEALKVQA 447 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~ 447 (494)
...|+.+| ..|+.+++.+++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHHc
Confidence 67777766 4577777666543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.78 E-value=8.6 Score=36.11 Aligned_cols=316 Identities=14% Similarity=0.080 Sum_probs=193.9
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHH--CCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSR--ARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF 159 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (494)
-..|..+-+.|..-.+..| |-++-.++.. .|+-..|+.+-.+..+. ...|-.-.-.++.
T Consensus 66 w~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLe---------- 126 (531)
T COG3898 66 WESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLE---------- 126 (531)
T ss_pred HhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHH----------
Confidence 3567777788877654443 5555555544 46677777665543321 1111111111111
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHh----HHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVST----CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGK 235 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (494)
-++-.-.|+ .+.|.+-|+.|.. |+.+ ...|.-.-.+.|..+.|...-+...+..+.
T Consensus 127 -----AQaal~eG~---~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~------- 186 (531)
T COG3898 127 -----AQAALLEGD---YEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ------- 186 (531)
T ss_pred -----HHHHHhcCc---hHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-------
Confidence 122334577 9999999999976 3333 333333445778889998888887654433
Q ss_pred ccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCcCHhH--HHHHHHHHHh---cCCHHHHHHHHHHHH
Q 011081 236 DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG-CEPDCYS--YSVLMAVFCE---ERRMREAEKLWEEMR 309 (494)
Q Consensus 236 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~li~~~~~---~g~~~~a~~~~~~m~ 309 (494)
-...+.+.+...+..|+|+.|+++++.-+... +.++..- -..|+.+-.. ..+...|...-.+..
T Consensus 187 ----------l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~ 256 (531)
T COG3898 187 ----------LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN 256 (531)
T ss_pred ----------CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 45778899999999999999999999876543 3444332 2233322111 234455555544444
Q ss_pred hCCCCCCHhHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC-C
Q 011081 310 DKNVEHDVVAY-NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR-KGFEP-E 386 (494)
Q Consensus 310 ~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p-~ 386 (494)
+. .|+.+-- ..-..++.+.|+..++-.+++.+-+..-.|+ .+. +..+.+.|+ .++.-++...+ ..++| +
T Consensus 257 KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 257 KL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLESLKPNN 328 (531)
T ss_pred hc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccc
Confidence 43 5554432 2345678999999999999999998744443 332 223344444 44444444332 12344 4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCC
Q 011081 387 GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE-EGKMEEALKVQAEMVGKGFEPS 457 (494)
Q Consensus 387 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~ 457 (494)
......+..+-...|++..|..--+... ...|....|..|.+.-.- .|+-.++...+.+.++..-.|+
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 4556666777778888888776655322 335888889888877554 4999999999999987654543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.74 E-value=8 Score=39.35 Aligned_cols=182 Identities=16% Similarity=0.103 Sum_probs=110.4
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHH----HH-HHhcCCHHHHHHHHHHHHh-------CCCCCCHhHHHHHHHHHHcc
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLM----AV-FCEERRMREAEKLWEEMRD-------KNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li----~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 330 (494)
...|.++++...+.| +...-..+. .+ +....+.+.|..+|+.+.+ .| .....+-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888888877 333322222 22 4466889999999998876 55 455677788888775
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--hcCC
Q 011081 331 G-----EMARAEEFFREMGLSGVESSSVTFEHLVNGYCR-AGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC--DKRR 402 (494)
Q Consensus 331 g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~ 402 (494)
. +.+.|+.+|.+....| .|+...+-..+..... ..+...|.++|....+.|.. +...+..++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 4 5677999999888887 5665554443333333 24577899999999888842 2222222221111 2346
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 403 VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFE 455 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (494)
...|..++.+.... | .|....-...+..+.. ++.+.+.-.+..+.+.|..
T Consensus 380 ~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 380 LELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 77788887744433 3 2322222223333444 6777777777777666543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.29 E-value=13 Score=37.87 Aligned_cols=154 Identities=15% Similarity=0.092 Sum_probs=94.6
Q ss_pred HHhcCCHhHHHHHHHHHHH-------cCCCcCHhHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 257 FYREGAFEKVEDVWVEMAR-------LGCEPDCYSYSVLMAVFCEER-----RMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
+....+++.|+.+|..+.+ .| +......+..+|.+.. +.+.|..+|...-+.| .|+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 4455689999999998877 45 3446677778887743 6778999999988887 34444433333
Q ss_pred HHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011081 325 GGFCE-IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC--RAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR 401 (494)
Q Consensus 325 ~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 401 (494)
..... ..+...|.++|......|. +...-+.+++.... ...+.+.|..+++...+.| .|-..--...+..+.. +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 22222 2467899999999998883 33333333322222 3346888999999998888 3332222233333333 5
Q ss_pred CHHHHHHHHHHHHHhCC
Q 011081 402 RVFEALDILKARVVKFG 418 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~~~ 418 (494)
..+.+.-.+. .+...|
T Consensus 412 ~~~~~~~~~~-~~a~~g 427 (552)
T KOG1550|consen 412 RYDTALALYL-YLAELG 427 (552)
T ss_pred cccHHHHHHH-HHHHhh
Confidence 5555555544 344433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.24 E-value=7.7 Score=34.27 Aligned_cols=185 Identities=10% Similarity=0.052 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLG--CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
...|+. +..-.+.|++++|.+.|+.+...- -+-...+--.++-++.+.++++.|....++..+.-......-|-..|
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344444 344567899999999999998652 12234456667778889999999999999887753333344565666
Q ss_pred HHHHcc-------CCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 325 GGFCEI-------GEMAR---AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 325 ~~~~~~-------g~~~~---A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
.+++.- .|... |..-|+++..+ -||+ .-...|......+... + ..-=..+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~-L---A~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA-L---AGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH-H---HHHHHHHH
Confidence 665522 12222 33333333332 2221 1111111111111100 0 00001233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 395 GELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
..|.+.|.+..|..-++++++...-.+ ....+-.+..+|...|-.++|.+.-.-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 456666666666666665444422111 122344555667777777777666555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.34 Score=28.21 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=11.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFRE 342 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~ 342 (494)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.92 E-value=13 Score=36.24 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=32.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVE-HDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
|...+.+.|+.++|.+.+.+|.+.... .+..+...|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444445566666666666666543211 133355566666666666666666666654
|
The molecular function of this protein is uncertain. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.41 E-value=3.8 Score=34.44 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD--VVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555666666666666666666655432222 2334555555555666666655555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.40 E-value=11 Score=34.41 Aligned_cols=223 Identities=14% Similarity=0.132 Sum_probs=125.1
Q ss_pred HhcCCHhHHHHHHHHHHHcC--CCcCHh------HHHHHHHHHHhcC-CHHHHHHHHHHHHhC--------CCCCC----
Q 011081 258 YREGAFEKVEDVWVEMARLG--CEPDCY------SYSVLMAVFCEER-RMREAEKLWEEMRDK--------NVEHD---- 316 (494)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~g--~~p~~~------~~~~li~~~~~~g-~~~~a~~~~~~m~~~--------g~~~~---- 316 (494)
.+.|+.+.|..++.+....- ..|+.. .|+.-.. ..+.+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46799999999999886643 233322 2333333 33455 888888888765432 12233
Q ss_pred -HhHHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 011081 317 -VVAYNTIIGGFCEIGEMA---RAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEV 392 (494)
Q Consensus 317 -~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 392 (494)
..++..++.+|...+..+ +|..+++.+.... +-....+..-+..+.+.++.+++.+++.+|+..- .-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 246778889998888754 5666777775542 2224455555666777899999999999999863 213344444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHhCCCCCCHH-HHH-HHH---HHHHhcCC------HHHHHHHHHHHHhC-CCCCC
Q 011081 393 LIGEL---CDKRRVFEALDILKARVVKFGLFPTEK-SYM-FLI---KGLCEEGK------MEEALKVQAEMVGK-GFEPS 457 (494)
Q Consensus 393 li~~~---~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~-~li---~~~~~~g~------~~~A~~~~~~m~~~-~~~p~ 457 (494)
++..+ ..... ..+...+...+.. .+.|... ... .++ ....+.++ ++...++++...+. +.+.+
T Consensus 161 ~l~~i~~l~~~~~-~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 161 ILHHIKQLAEKSP-ELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHhhCc-HHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 44444 44333 4455555544443 2333332 111 111 11222222 44555555543332 22334
Q ss_pred HHHHHHH-------HHHHHhcCCHHHHHHHHHHHH
Q 011081 458 LEIYSAF-------IDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 458 ~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~ 485 (494)
..+-.++ ...+.+.++++.|.+.|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3332222 234567899999999998543
|
It is also involved in sporulation []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.35 E-value=4.2 Score=34.17 Aligned_cols=99 Identities=11% Similarity=0.029 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH-
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD--CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT- 322 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~- 322 (494)
-...+..+...|++.|+.++|++.|.++.+....+. ...+-.+|......+++..+.....+....--.........
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 346788999999999999999999999988754443 34567788888999999999988877654311111111111
Q ss_pred --HHH--HHHccCCHHHHHHHHHHHH
Q 011081 323 --IIG--GFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 323 --li~--~~~~~g~~~~A~~~~~~m~ 344 (494)
... .+...+++.+|-+.|-+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1223567777777766553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.22 Score=28.62 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVE 267 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~ 267 (494)
|..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 8999999999999999999986
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.89 E-value=4.1 Score=36.96 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=54.2
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN---VEHD--VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
....+...++..-....+++.+...+-.++..- ..++ ..+|-.++. .-++++++.++..=.+-|+-||-.+
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhh
Confidence 334444455554555566666666665554421 1111 222222222 2255566666666666677777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
++.+|+.+.+.+++.+|.++.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777766666655543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.77 E-value=10 Score=32.69 Aligned_cols=202 Identities=15% Similarity=0.074 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
...+......+...+++..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 455666667777777777777777666542 223344556666666667777777777777776643222 122222233
Q ss_pred -HHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 011081 326 -GFCEIGEMARAEEFFREMGLSGV--ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR 402 (494)
Q Consensus 326 -~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 402 (494)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..............+..+...+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 67778888888888887754221 122333444444466777888888888887765321135566677777777778
Q ss_pred HHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 403 VFEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.+.+...+....... |+ ...+..+...+...|..+.+...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD---PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC---cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888877555432 32 333444444444666788888888877754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.35 E-value=15 Score=34.16 Aligned_cols=130 Identities=13% Similarity=0.128 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-----cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHhHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCE-----PDCYSYSVLMAVFCEERRMREAEKLWEEMRD----KNVEHDVVAY 320 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~ 320 (494)
.-+|..++.-.+.++++++.|+...+-.-. ....+|..|-..|.+..++++|.-+.....+ .++..=..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 344667777778899999998877553111 1234688899999999999998866554432 2322111122
Q ss_pred H-----HHHHHHHccCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 321 N-----TIIGGFCEIGEMARAEEFFREMGL----SGVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 321 ~-----~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 379 (494)
. .|.-++-..|+...|.+.-++..+ .|-.+ -......+.+.|...|+.|.|+.-|++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 344566778888888887776543 23222 22344567778889999998888777643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.91 Score=25.75 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 459 EIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 459 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.+|..+..+|...|++++|+..+++.++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3456666666667777777777776666444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.13 E-value=1.3 Score=40.03 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=66.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 011081 346 SGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG---FEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT 422 (494)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 422 (494)
.|.+.+..+...++..-....+++.+...+-.+...- ..|+.. -...++. +-.-+.++++.++.. -..+|+.||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irl-llky~pq~~i~~l~n-pIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRL-LLKYDPQKAIYTLVN-PIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHH-HHccChHHHHHHHhC-cchhccccc
Confidence 3545566666666666666677777777777765431 122221 1222222 334456677777663 446788888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 423 EKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
..+++.+|+.+.+.+++.+|.++.-.|..+
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888888887777655
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.94 E-value=15 Score=33.29 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 419 LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK-GFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 419 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
-.++..+...++..++..+++.+-.++++..... +..-|...|..+|......|+..-..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 3445555555555566666666555555555443 333455556666665555555443333
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.88 E-value=11 Score=33.85 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEM 308 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 308 (494)
++.....|.++|.+.+|.++.+..+... +.+...+-.|+..++..|+--.|.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455566666677777777766666655 556666666777777777655555555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.60 E-value=1.1 Score=25.20 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 460 IYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 460 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.|..+...+...|++++|++.+++.++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455566666677777777777777666444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.41 E-value=11 Score=30.91 Aligned_cols=56 Identities=20% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 354 TFEHLVNG---YCRAGDVDSAILVYNDMCRKGFEPEG---STIEVLIGELCDKRRVFEALDILKAR 413 (494)
Q Consensus 354 ~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~ 413 (494)
+.+.||.. -.+.++.+++..++.-+.-. .|.. .++... .+...|++.+|+.+|++.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHH
Confidence 34444443 35667888888888888664 3433 333333 356789999999999853
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.06 E-value=16 Score=32.52 Aligned_cols=212 Identities=9% Similarity=0.090 Sum_probs=121.7
Q ss_pred CCCcChHhHHHHHHH-HHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHH
Q 011081 191 GLSVKVSTCNALIWE-VSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDV 269 (494)
Q Consensus 191 g~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 269 (494)
+-.||+..-|..-.. -.+..+.++|+.-|.+.++..++ .-...-.+.-.+|..+.+.|++++.++.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgE-------------KgeWGFKALKQmiKI~f~l~~~~eMm~~ 87 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGE-------------KGEWGFKALKQMIKINFRLGNYKEMMER 87 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccc-------------cchhHHHHHHHHHHHHhccccHHHHHHH
Confidence 445555443332211 12334678888888888765432 0122344566788999999999999999
Q ss_pred HHHHHHc---CC--CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011081 270 WVEMARL---GC--EPDCYSYSVLMAVFCEERRMREAEKLWEEMRD----KN-VEHDVVAYNTIIGGFCEIGEMARAEEF 339 (494)
Q Consensus 270 ~~~m~~~---g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g-~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (494)
+.+|..- .+ .-+....|++++--+...+.+.-.+.|+.-.+ .. -..=-.|-+-|...|...|++.+..++
T Consensus 88 Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KI 167 (440)
T KOG1464|consen 88 YKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKI 167 (440)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHH
Confidence 9988532 11 12344567777766666666555555543221 10 011112334567778888888888888
Q ss_pred HHHHHhCCCC----C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHH-----HhcCC
Q 011081 340 FREMGLSGVE----S-------SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-EPEGSTIEVLIGEL-----CDKRR 402 (494)
Q Consensus 340 ~~~m~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~-----~~~~~ 402 (494)
++++.++.-. - =...|..=|..|....+-.+...+|++.+...- -|... .-.+|+-| .+.|+
T Consensus 168 lkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~ 246 (440)
T KOG1464|consen 168 LKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGE 246 (440)
T ss_pred HHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccch
Confidence 8887654211 1 124566667777777777777778877654321 23322 22333333 35577
Q ss_pred HHHHHHHHHHHHHh
Q 011081 403 VFEALDILKARVVK 416 (494)
Q Consensus 403 ~~~a~~~~~~~~~~ 416 (494)
+++|-.-|-+..+.
T Consensus 247 fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 247 FEKAHTDFFEAFKN 260 (440)
T ss_pred HHHHHhHHHHHHhc
Confidence 77765544445543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=88.85 E-value=23 Score=34.14 Aligned_cols=209 Identities=16% Similarity=0.224 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH-------HHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS-------VLMAVFCE----ERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------~li~~~~~----~g~~~~a~~~~~~m~~~g~~ 314 (494)
-+.++..++....+.++..+|.+.+.-+.-. .|+...-. .+-+..+. .-+...=+.+|++....++.
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 4567888888888999999998888777654 34433221 22222221 11223334555555554322
Q ss_pred CC-HhHHH-HHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCC
Q 011081 315 HD-VVAYN-TIIGGFCEIGE-MARAEEFFREMGLSGVESSSVTFEHLV----NGYCR---AGDVDSAILVYNDMCRKGFE 384 (494)
Q Consensus 315 ~~-~~~~~-~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li----~~~~~---~g~~~~a~~~~~~m~~~~~~ 384 (494)
.. .+.|- --..-+.+.|. -++|+.+++...+-. +-|...-|.+. ..|.+ ...+..-+.+-+-+.+.|+.
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 11 11111 11233555565 788999999887642 33333333222 23322 23345556666666678887
Q ss_pred CChh----hHHHHHH--HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 385 PEGS----TIEVLIG--ELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 385 p~~~----~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
|-.+ .-|.+.+ .+...|++.++.-.-. .+. .+.|++.+|..+.-++....++++|..++..+ +|+.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~-WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~ 525 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSS-WLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNE 525 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHH-HHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCch
Confidence 6433 3344433 3557899998876643 333 45799999999998899999999999999865 7888
Q ss_pred HHHHHHH
Q 011081 459 EIYSAFI 465 (494)
Q Consensus 459 ~~~~~li 465 (494)
.++++=+
T Consensus 526 ~~~dskv 532 (549)
T PF07079_consen 526 RMRDSKV 532 (549)
T ss_pred hhHHHHH
Confidence 8777544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.57 E-value=15 Score=31.62 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
..||-|.--+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 34555555555556666666666655554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.50 E-value=23 Score=33.55 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 422 TEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP---SLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
...+|..++..+.+.|.++.|...+.++.+.+... +..+.-.-.......|+.++|...+++.++.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44577888888889999999999888887643111 3344444556667778889999888888773
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.74 E-value=15 Score=30.48 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHH
Q 011081 268 DVWVEMARLGCEPDCYSYSVLMAVFCEERRMR 299 (494)
Q Consensus 268 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 299 (494)
++++.+.+.++.|+...|..+++.+.+.|++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33344444455555555555555555555433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.32 E-value=41 Score=35.19 Aligned_cols=174 Identities=15% Similarity=0.235 Sum_probs=115.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHH----HHHHHhcCCHhHHHHHHHHHH
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNAL----MVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~ 274 (494)
...-+..+++...++.|..+.+.- .-+..+...+ .+-+.+.|++++|...|-+-.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---------------------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---------------------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---------------------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 344566667777777777766554 1233333333 344557899999999887765
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVT 354 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 354 (494)
.. ++| ..+|.-|.+..++..--.+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-
T Consensus 396 ~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd 465 (933)
T KOG2114|consen 396 GF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFD 465 (933)
T ss_pred cc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eee
Confidence 43 233 23666777777778888888999998854 66677899999999999998877776554 3321 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
....+..|.+.+-.++|..+-..... .......+ +...+++++|++++.
T Consensus 466 ~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 466 VETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYIS 514 (933)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHh
Confidence 34566777777777777776655432 22333333 456788999999887
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.94 E-value=0.8 Score=26.26 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=10.1
Q ss_pred CHhHHHHHHHHHHccCCHHHH
Q 011081 316 DVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A 336 (494)
|..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.74 E-value=42 Score=34.75 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcC
Q 011081 162 DLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRG 209 (494)
Q Consensus 162 ~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 209 (494)
=.+|--|.|.|+ +++|.++.....+ ........+-..+..|...
T Consensus 115 Wa~Iyy~LR~G~---~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGD---YDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT----HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 356667888888 8999888844443 2333445556667777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.12 E-value=26 Score=31.72 Aligned_cols=162 Identities=9% Similarity=0.086 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHH-------hcC-Ccccccccccc---ccccccccc
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREV-------FGL-DSDATAGIGKD---VKRVVRVRP 245 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~-~~~~~~~~~~~---~~~~~~~~p 245 (494)
-..|.++|.-++...-+ ..+-+-++.++-...+..+|...+... +.. +.. ....+.+ .-...++.-
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~n-e~vts~d~~Ykld~~~~k~ 225 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNAN-EAVTSQDRKYKLDAGLPKY 225 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccC-ceEEEcCCceEEecCCccc
Confidence 35789999888875322 344456677777777777776655432 221 000 0000000 011123555
Q ss_pred CHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCcCH-------------h----HHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 246 NVHTFNALMVGFYRE-GAFEKVEDVWVEMARLGCEPDC-------------Y----SYSVLMAVFCEERRMREAEKLWEE 307 (494)
Q Consensus 246 ~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~-------------~----~~~~li~~~~~~g~~~~a~~~~~~ 307 (494)
|+.-|-..+...-+. -.++++.++....+.. .-|+. . +++.....|..+|.+.+|.++.+.
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 777676666544332 2355555555544321 11111 0 112233344555555555555555
Q ss_pred HHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 308 MRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 308 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
.+... +.+...|-.++..+...|+--.|.+-++++
T Consensus 305 ~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 305 ALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 55443 344455555555555555544444444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=28 Score=31.82 Aligned_cols=221 Identities=11% Similarity=0.068 Sum_probs=130.5
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHhHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRM----REAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
+|.......+.++...|. +++...+..+.. .+|...-...+.+++..|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 355566666667776664 344444445543 34556666667777777763 4567777666443 4566666
Q ss_pred HHHHHHHHccCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011081 321 NTIIGGFCEIGEM-----ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIG 395 (494)
Q Consensus 321 ~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 395 (494)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 6666666554421 233444433332 3355555666777777776 4566766666653 34445555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 396 ELCDKR-RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNV 474 (494)
Q Consensus 396 ~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 474 (494)
++.+.+ ....+...+...+.+ ++..+-...+.++.+.|+ ..|...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 555543 234566655545533 566667778888888887 45565555555432 2 234677888888884
Q ss_pred HHHHHHHHHHHHccc
Q 011081 475 EMATMLRKEMFENQV 489 (494)
Q Consensus 475 ~~a~~~~~~m~~~~~ 489 (494)
+|...+.++.+...
T Consensus 252 -~a~p~L~~l~~~~~ 265 (280)
T PRK09687 252 -TLLPVLDTLLYKFD 265 (280)
T ss_pred -hHHHHHHHHHhhCC
Confidence 68888888776443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.70 E-value=2.2 Score=25.37 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555566666666666666665554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.11 E-value=11 Score=32.13 Aligned_cols=20 Identities=5% Similarity=-0.022 Sum_probs=8.2
Q ss_pred ChhhHHHHHHHHHhcCCHHH
Q 011081 386 EGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~ 405 (494)
|...+.+|+..+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33344444444444444433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.41 E-value=2.9 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 459 EIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 459 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3555666666666666666666666554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.37 E-value=8.5 Score=28.24 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
=++.+-++.+....+.|+.....+.+++|.+.+++..|.++++..+.+. ..+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 3556666666667777888888888888888888888888887766431 113334554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.33 E-value=3.4 Score=23.29 Aligned_cols=27 Identities=11% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.19 E-value=10 Score=32.21 Aligned_cols=72 Identities=6% Similarity=0.040 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhHHHHHHHHHHccCCHHHH
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK---NVEHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A 336 (494)
++|.+.|-++...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555555553333333333333333 44555555555554432 2244555556666666655555554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.06 E-value=9.2 Score=32.91 Aligned_cols=78 Identities=8% Similarity=0.011 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccc
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRV 240 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
.+..++.+.+.+. +.+++...+.-++.... |.-.-..++..||-.|++++|..-++-.-...+.
T Consensus 4 l~~t~seLL~~~s---L~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~------------ 67 (273)
T COG4455 4 LRDTISELLDDNS---LQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ------------ 67 (273)
T ss_pred hHHHHHHHHHhcc---HHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc------------
Confidence 3445566666777 99999998888876543 6677788999999999999999888777554443
Q ss_pred cccccCHHHHHHHHHH
Q 011081 241 VRVRPNVHTFNALMVG 256 (494)
Q Consensus 241 ~~~~p~~~~~~~li~~ 256 (494)
..+-..+|..+|.+
T Consensus 68 --~t~~a~lyr~lir~ 81 (273)
T COG4455 68 --DTVGASLYRHLIRC 81 (273)
T ss_pred --cchHHHHHHHHHHH
Confidence 34566777777765
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.81 E-value=22 Score=29.05 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=29.7
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH-HHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCYSYS-VLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
.-.+.++.+++..++..+.-. .|...... .-...+.+.|++++|.++|+++.+.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 334556677777777666544 33332221 1122355667777777777776554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.77 E-value=29 Score=30.34 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhC--CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 331 GEMARAEEFFREMGLS--GVESSSVT---FEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~--~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
.++++|+..|++.-+- |-..+... +.-....-+..+++.+|+.+|+++....+..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555666666554331 21222222 2222333456788999999999987765443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.27 E-value=0.31 Score=39.37 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=37.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 368 (494)
|..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcchH
Confidence 34444445555555555555544434445555555555555555455554444110 01223344444555555
Q ss_pred HHHHHHHHH
Q 011081 369 DSAILVYND 377 (494)
Q Consensus 369 ~~a~~~~~~ 377 (494)
++|..++..
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555554444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.85 E-value=3.7 Score=23.07 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 460 IYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 460 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
+|..+...|...|++++|.+.|++.++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566667777778888888888887777554
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.81 E-value=23 Score=28.51 Aligned_cols=51 Identities=8% Similarity=0.037 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 330 IGEMARAEEFFREMGLSGVESSSVTF-EHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
.++++++..+++.|.-. .|+..-. ..-.-.+...|++++|..+|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 45555555555555432 2222111 111122345566666666666655543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.51 E-value=13 Score=27.37 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 370 SAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 370 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
++.+-++.+...++.|+.....+.+.+|-+.+++..|.++|+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE 66 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILE 66 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444444444444555555555555555555555555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.14 E-value=0.49 Score=38.19 Aligned_cols=85 Identities=7% Similarity=0.087 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
.+|..+.+.+.+.....+++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 346677778889999999999987765667888899999999998877877776621 1133345666666667
Q ss_pred CHHHHHHHHHHH
Q 011081 332 EMARAEEFFREM 343 (494)
Q Consensus 332 ~~~~A~~~~~~m 343 (494)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666655543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.60 E-value=19 Score=34.92 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=56.0
Q ss_pred HHccCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 327 FCEIGEMARAEE-FFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 327 ~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
-...|++-.|-+ ++..+....-.|+.+...+.| +...|+++.+.+.+....+. +.....+..+++....+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 334555544433 333333332234443333332 34556666666666554332 22344455566666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
|...-. +|....++ +........-.--..|-++++.-.|++...
T Consensus 376 a~s~a~-~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 376 ALSTAE-MMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHH-HHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 666654 33332222 222222222222334556666666666653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.48 E-value=29 Score=28.78 Aligned_cols=134 Identities=11% Similarity=0.081 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChH-hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVS-TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
...|...++.... +. .++|+..|..+.+.|..--+. ............|+...|...|+++-...+
T Consensus 59 gd~flaAL~lA~~-~k---~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~--------- 125 (221)
T COG4649 59 GDAFLAALKLAQE-NK---TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS--------- 125 (221)
T ss_pred hHHHHHHHHHHHc-CC---chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---------
Confidence 4556666654433 44 789999999998877653222 222333456778888899999988855332
Q ss_pred cccccccccCHH-HHHHH--HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 237 VKRVVRVRPNVH-TFNAL--MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 237 ~~~~~~~~p~~~-~~~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
.|-.. -...| .-.+...|.++......+.+-..+-+.-...-..|.-+-.+.|++.+|.++|..+...
T Consensus 126 -------~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 126 -------IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred -------CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 12111 11111 1234567788888877777765554444455567777777888888888888887654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.40 E-value=10 Score=32.59 Aligned_cols=76 Identities=8% Similarity=0.098 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhHHHHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN--VEHDVVAYNTIIGG 326 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~ 326 (494)
.+.-++.+.+.+.+.+++...++-.+.. +.|..+-..+++.+|-.|++++|..-++..-+.. ..+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4555677788889999999888877764 5566777889999999999999988777765442 23345566666654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.39 E-value=5.1 Score=22.38 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
.|..+...+.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.08 E-value=4.3 Score=37.21 Aligned_cols=94 Identities=18% Similarity=0.089 Sum_probs=59.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 359 VNGYCRAGDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG 437 (494)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 437 (494)
..-|.+.|.+++|+..|...+.. .| +.+++..-..+|.+...+..|..-....+.-.. .-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHHHh
Confidence 36788999999999999887654 45 888888888899998888877665543322100 01123333333333445
Q ss_pred CHHHHHHHHHHHHhCCCCCCH
Q 011081 438 KMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~ 458 (494)
...+|.+=++..++ +.|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 56666666666653 46663
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.99 E-value=22 Score=31.92 Aligned_cols=89 Identities=8% Similarity=0.087 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--
Q 011081 252 ALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE-- 329 (494)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 329 (494)
.=|.++++.++|.+++...-+--+.--+--......-|-.|.|.+.+..+.++-..-.+.--.-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 447889999999999887766554422333445666777899999999998888777664223344558887777654
Q ss_pred ---cCCHHHHHHHH
Q 011081 330 ---IGEMARAEEFF 340 (494)
Q Consensus 330 ---~g~~~~A~~~~ 340 (494)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 59999998877
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.97 E-value=3.1 Score=23.08 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 464 FIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 464 li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
+..++.+.|++++|.+.|+++++.-|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 44455556666666666666665443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.90 E-value=5.7 Score=27.86 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEK-SYMFLIKGLCEEGKMEEALKV 445 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~ 445 (494)
..++-++|+..|...+.+..-.++.. ++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444332222221 344455555555555544443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.53 E-value=21 Score=26.55 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 265 KVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 265 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++++.++.+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 456666666677778888888888888888888888888888776541 122225555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.49 E-value=1.3e+02 Score=35.76 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 423 EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
..+|....+..-+.|.++.|...+-...+.+ .| ..+-....-....|+...|+.++++.++.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4567777887778999999988877776654 33 3444555667888999999999999886554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.42 E-value=11 Score=34.68 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=32.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEP-DCYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
.+-|.+.|.+++|++.|..-... .| |.+++..-..+|.+.+.+..|+.=....+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 35566667777777776655543 33 66666666666766666665555444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.21 E-value=22 Score=30.27 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 292 FCEERRMREAEKLWEEMRDKNVEH----DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (494)
+.+.|++++|..-|.+.+..-... -.+.|..-..++.+.+.++.|++-.....+.+ +.......--..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 344555555555555555431111 11223333444555555555555555554443 1111222222335555566
Q ss_pred HHHHHHHHHHHHHC
Q 011081 368 VDSAILVYNDMCRK 381 (494)
Q Consensus 368 ~~~a~~~~~~m~~~ 381 (494)
+++|+.-|+.+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 3e-15
Identities = 34/266 (12%), Positives = 78/266 (29%), Gaps = 6/266 (2%)
Query: 225 LDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYS 284
L S AG +D R P L+ + + + + + ++
Sbjct: 70 LLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQR 129
Query: 285 YSVLMAVFCEERRMREAEKLWEEMRD---KNVEHDVVAYNTIIGGFCEIGEMARAEEFFR 341
++ A L K + YN ++ G+ G
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 342 EMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVY-NDMCRKGFEPEGSTIEVLIGELCDK 400
+ +G+ +++ + R I M ++G + + VL+ D+
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL-SEEDR 248
Query: 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEI 460
V +A+ +K P + L++ + + K+ + +
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH-LPLKTLQCLFEKQ 307
Query: 461 YSAFIDGYMKEGNVEMATMLRKEMFE 486
+ + +VE T+ KE+
Sbjct: 308 LHMELASRVCVVSVEKPTLPSKEVKH 333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 7e-09
Identities = 40/314 (12%), Positives = 84/314 (26%), Gaps = 59/314 (18%)
Query: 56 SRWNHLLSLCRSGLTPTQFSQIALGLKNNPHLALRFFSFTQHKSLCKHSLSS--YATIIH 113
RW +L + Q L K F + + L S A +
Sbjct: 24 GRWAKILEKDKRTQ---QMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLE 80
Query: 114 ILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLL--IKCCLEV 171
+R P + + L+ L + + + + + LL KCCL
Sbjct: 81 DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140
Query: 172 KNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA 231
+ + + +
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKL-------------------------------------- 162
Query: 232 GIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAV 291
+ +NA+M+G+ R+GAF+++ V + G PD SY+ +
Sbjct: 163 -------------LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 292 FC-EERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVES 350
+++ E+ E+M + ++ + ++ + + L
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 351 SSVTFEHLVNGYCR 364
V L+
Sbjct: 270 PPVNTSKLLRDVYA 283
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 68/454 (14%), Positives = 135/454 (29%), Gaps = 112/454 (24%)
Query: 101 CKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKL-KLFEVLVKTYRECGSAPF 159
CK ILS+ + D I + S + +LF L + +E F
Sbjct: 35 CKDVQDM---PKSILSKEEI-----DHI---IMSKDAVSGTLRLFWTL-LSKQEEMVQKF 82
Query: 160 VFDLL------------IKCCLEVKNIEKIETCVD--------IVRMLMSRGLSVKVSTC 199
V ++L + D + +SR
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR- 141
Query: 200 NALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV--KRVVRVRPNVHTFNA----L 253
AL+ E+ K V+ + G+ G GK V + L
Sbjct: 142 QALL-ELRPAKNVL--------IDGV-----LGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 254 MVGFYR--EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311
+ E E ++ + ++ +S ++ + + + +R +L + +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYE 244
Query: 312 N---VEHDVVAYNTIIGGF---CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA 365
N V + V F C+I R ++ LS ++ ++ +H
Sbjct: 245 NCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPD 301
Query: 366 GDVDSAILVYNDMCRKGFEPEGSTIEVL----IGEL---------------CDK-RRVFE 405
+V S +L Y D + E T I E CDK + E
Sbjct: 302 -EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 406 A-LDIL-----KARVVKFGLFP-----TEKSYMFLIKGLCEEGKMEEALKVQAEMVGKG- 453
+ L++L + + +FP L+ + + + + V ++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTI----LLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 454 -----FEPSLEIYSAFIDGYMKEGNVEMATMLRK 482
E ++ I S +++ +K + R
Sbjct: 417 VEKQPKESTISIPSIYLE--LKVKLENEYALHRS 448
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.2 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.95 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.75 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.73 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.72 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.65 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.64 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.63 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.53 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.52 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.51 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.5 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.48 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.46 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.45 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.44 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.38 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.35 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.31 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.29 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.29 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.29 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.19 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.15 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.09 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.06 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.01 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.97 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.96 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.9 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.89 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.83 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.83 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.8 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.77 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.77 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.63 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.62 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.62 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.6 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.51 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.36 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.35 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.18 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.14 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.05 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.05 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.67 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.63 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.62 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.59 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.58 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.36 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.14 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.97 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.87 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.86 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.43 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.42 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.41 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.41 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.32 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.31 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.24 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.49 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.38 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.31 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.43 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.86 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.73 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.84 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.78 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.04 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.6 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.53 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.17 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.02 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.68 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.57 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.23 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.6 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.85 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.4 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.52 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.43 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.79 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.58 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 81.23 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.57 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=276.60 Aligned_cols=380 Identities=8% Similarity=-0.030 Sum_probs=253.9
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCC---
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGS--- 156 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 156 (494)
...++++.|+.+|..+... .|+..++..++.+|.+.|++++|..+++.+... ..+...+..+..+|.++|.
T Consensus 95 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHH
Confidence 3456788888888887632 467788888889999999999999988887542 3456777777777776652
Q ss_pred ------------------------------ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCC-------------
Q 011081 157 ------------------------------APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLS------------- 193 (494)
Q Consensus 157 ------------------------------~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~------------- 193 (494)
+..+|+.++.+|.+.|+ +++|+++|++|.+.+..
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN---FDRAKECYKEALMVDAKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCchhhHHHHHHHHhhc
Confidence 14578888889999998 88888888888765432
Q ss_pred ---------------------------------------------------------cChHhHHHHHHHHHcCCChhHHH
Q 011081 194 ---------------------------------------------------------VKVSTCNALIWEVSRGKGVISGY 216 (494)
Q Consensus 194 ---------------------------------------------------------~~~~~~~~ll~~~~~~~~~~~a~ 216 (494)
++..+++.++.+|.+.|++++|.
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 23334444444444444444444
Q ss_pred HHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC
Q 011081 217 EIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER 296 (494)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 296 (494)
++|+++.+.++ .+..+|+.++.+|.+.|++++|..+++++.+.. +.+..+|+.++.+|.+.|
T Consensus 326 ~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 326 AITTKILEIDP-----------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHHCT-----------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCc-----------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhc
Confidence 44444433221 144445555555555555555555555555432 345666777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 297 RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYN 376 (494)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 376 (494)
++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+
T Consensus 388 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 388 KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776543 3356677777777777777777777777776654 4466677777777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 377 DMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKF---GLFPT--EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 377 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
++.+.. +.+..+|+.++..|.+.|++++|.++|++++... +..|+ ..+|..++.+|.+.|++++|.++|+++.+
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 776653 3356677777777777777777777777554432 44565 56777777777777777777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 452 KGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 452 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.+ +.+..+|..+..+|.+.|++++|.++++++.+.++.
T Consensus 545 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 545 LS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 53 336777777777777777777777777777775543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=271.66 Aligned_cols=376 Identities=11% Similarity=0.048 Sum_probs=318.8
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcC----------------CChhhHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECG----------------SAPFVFDLLI 165 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~~~li 165 (494)
.++...|+.++..+.+.|++++|..+++.+.... ++...+..+...|...| +++.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHH
Confidence 3578899999999999999999999999998632 33455555666655544 4678899999
Q ss_pred HHHHhcCChhcHHHHHHHHHHHHhC---------------CCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccc
Q 011081 166 KCCLEVKNIEKIETCVDIVRMLMSR---------------GLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDAT 230 (494)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (494)
.+|.+.|+ +++|+++|+++... |...+..+|+.++.+|.+.|++++|.++|+++...++...
T Consensus 158 ~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 158 FCLVKLYD---WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHTTC---HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhh---HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 99999999 99999999853221 2234688999999999999999999999999987665411
Q ss_pred cc---------------------------------------------c---c--cccc----cccccccCHHHHHHHHHH
Q 011081 231 AG---------------------------------------------I---G--KDVK----RVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 231 ~~---------------------------------------------~---~--~~~~----~~~~~~p~~~~~~~li~~ 256 (494)
.. . + .++. +.....++..+|+.++.+
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 00 0 0 0111 112335899999999999
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 336 (494)
|.+.|++++|+++|+++.+.+ +.+..+++.++.+|.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999876 4478899999999999999999999999998664 56789999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVK 416 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 416 (494)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++++..
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 5678899999999999999999999999999875 457889999999999999999999999977665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 417 FGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK----GFEPS--LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 417 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.++
T Consensus 471 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 471 F--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp C--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred C--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4 347889999999999999999999999999876 67888 88999999999999999999999999998765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=270.07 Aligned_cols=204 Identities=15% Similarity=0.161 Sum_probs=130.4
Q ss_pred HHHHHHHHHHcCCCcCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC---------HHH
Q 011081 266 VEDVWVEMARLGCEPDC-YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE---------MAR 335 (494)
Q Consensus 266 a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~ 335 (494)
+..+.+++.+.+..+.. ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455555555544332 34566666666666666666666666666666666666666666665443 466
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+ .|.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~-~M~ 167 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA-HMV 167 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH-HHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777776 455
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 416 KFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK 470 (494)
Q Consensus 416 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 470 (494)
+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6677777777777777777777777777777777777777777777777766654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=269.80 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHhCCCCcChH-hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVS-TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV 255 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 255 (494)
...+..+.+.+.+.+....+. .++.+|++|++.|++++|+++|++|.+ .|++||..|||+||.
T Consensus 6 ~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~----------------~Gv~pd~~tyn~Li~ 69 (501)
T 4g26_A 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR----------------NGVQLSQYHYNVLLY 69 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH----------------HTCCCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------cCCCCCHhHHHHHHH
Confidence 345566667777777765553 578889999999999999999999965 567899999999999
Q ss_pred HHHhcCC---------HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 256 GFYREGA---------FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 256 ~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
+|++.+. +++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+||++|.+
T Consensus 70 ~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~ 149 (501)
T 4g26_A 70 VCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149 (501)
T ss_dssp HHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHH
Confidence 9987664 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 150 ~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 150 FCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-26 Score=219.17 Aligned_cols=361 Identities=15% Similarity=0.075 Sum_probs=311.4
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChh
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPF 159 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (494)
...++++.|++.|..+.... +.+...+..+...+...|++++|...++.+++ ....++.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-------------------~~p~~~~ 68 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-------------------QNPLLAE 68 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHH
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------cCCCchH
Confidence 34678899999988876543 34566777788888899999999999988765 2345677
Q ss_pred hHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccc
Q 011081 160 VFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKR 239 (494)
Q Consensus 160 ~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
+|..+..++.+.|+ +++|++.|+++.+.... +..+|..+..++.+.|++++|.+.|+++.+..|.
T Consensus 69 ~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------- 133 (388)
T 1w3b_A 69 AYSNLGNVYKERGQ---LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD----------- 133 (388)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Confidence 89999999999999 99999999999986432 5678999999999999999999999999876543
Q ss_pred ccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011081 240 VVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 240 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
+...+..+...+...|++++|.++|+++.+.. +-+..+|..+...+.+.|++++|...|+++.+.+ +.+...
T Consensus 134 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 134 ------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp ------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 56778889999999999999999999998874 4457889999999999999999999999998875 446788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD 399 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 399 (494)
|..+...+...|++++|...|++..+.. +.+..++..+...|.+.|++++|.+.|+++.+.+ +.+..++..+...+.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 4568899999999999999999999999999875 3356789999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 400 KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.|++++|.+.+++.+... +.+..++..+...+.+.|++++|.+.++++.+. .+.+..++..+..+|.+.|++++|.+
T Consensus 284 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999777654 457889999999999999999999999999865 24458899999999999999999999
Q ss_pred HHHHHHHccc
Q 011081 480 LRKEMFENQV 489 (494)
Q Consensus 480 ~~~~m~~~~~ 489 (494)
.++++++..+
T Consensus 361 ~~~~a~~~~p 370 (388)
T 1w3b_A 361 HYKEAIRISP 370 (388)
T ss_dssp HHHHHHTTCT
T ss_pred HHHHHHhhCC
Confidence 9999998654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-24 Score=206.57 Aligned_cols=345 Identities=14% Similarity=0.074 Sum_probs=295.8
Q ss_pred HHhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCC
Q 011081 78 ALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSA 157 (494)
Q Consensus 78 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (494)
+....++.+.|..++..+.... +.+..+|..+..++.+.|++++|...++.+++. .+.+
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------~p~~ 100 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL-------------------KPDF 100 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------CTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------------------Ccch
Confidence 3445678899999998876544 567889999999999999999999999998762 2334
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
..+|..+..++.+.|+ +++|++.|+++.+.... +...+..+...+...|++++|.+.|+++....+.
T Consensus 101 ~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------- 167 (388)
T 1w3b_A 101 IDGYINLAAALVAAGD---MEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN--------- 167 (388)
T ss_dssp HHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Confidence 5678889999999999 99999999999986533 5667888889999999999999999999875543
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
+..+|+.+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+.. +.+.
T Consensus 168 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 168 --------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp --------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 68899999999999999999999999999875 4457789999999999999999999999998764 4468
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGEL 397 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 397 (494)
.++..+..+|.+.|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999999875 5567889999999999999999999999999874 55788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDGYMKEG 472 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 472 (494)
...|++++|.+.+++.+... +.+..++..+..+|.+.|++++|.+.|+++.+. .| +...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99999999999999655432 345778999999999999999999999999964 55 4677777777776655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-22 Score=195.11 Aligned_cols=337 Identities=10% Similarity=0.056 Sum_probs=278.2
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCV 181 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~ 181 (494)
+.+...+..+...+.+.|++++|..+|+.+++. ...++.++..+..++...|+ +++|+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~~l~~~~~~~g~---~~~A~ 80 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG-------------------DPDNYIAYYRRATVFLAMGK---SKAAL 80 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------CCccHHHHHHHHHHHHHCCC---HHHHH
Confidence 345677888999999999999999999998762 23457788889999999999 99999
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCH---HHHHHH-----
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNV---HTFNAL----- 253 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~l----- 253 (494)
+.|+++.+.+.. +..++..+..+|.+.|++++|.+.|+++....+. +. ..|..+
T Consensus 81 ~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 81 PDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-----------------ENEEKEAQSQLIKSDE 142 (450)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------------ChhhHHHHHHHHHHHH
Confidence 999999987644 6788999999999999999999999999876543 34 566655
Q ss_pred -------HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 254 -------MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 254 -------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...+.+.|++++|+.+|+++.+.. +.+..++..+..+|.+.|++++|.++|+.+.+.. +.+..+|..+..+
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444899999999999999998875 4578889999999999999999999999998764 4578999999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhh
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHL------------VNGYCRAGDVDSAILVYNDMCRKGFEPE-----GST 389 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~ 389 (494)
|.+.|++++|+..|+++.+.. +.+...+..+ ...|...|++++|...|+.+.+.. |+ ...
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHH
Confidence 999999999999999998764 4455555554 788999999999999999998853 44 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH--
Q 011081 390 IEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFID-- 466 (494)
Q Consensus 390 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~-- 466 (494)
+..+...+.+.|++++|+..+++.+... +.+...|..+..+|...|++++|.+.++++.+. .|+ ...+..+..
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 8888999999999999999999777653 246789999999999999999999999999964 554 566666653
Q ss_pred ----------HHHhcC-----CHHHHHHHHHH-HHHc
Q 011081 467 ----------GYMKEG-----NVEMATMLRKE-MFEN 487 (494)
Q Consensus 467 ----------~~~~~g-----~~~~a~~~~~~-m~~~ 487 (494)
.|...| +.+++.+.+++ ..+.
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 244444 56777888876 4443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-22 Score=199.26 Aligned_cols=310 Identities=12% Similarity=0.029 Sum_probs=262.4
Q ss_pred cCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccc
Q 011081 154 CGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGI 233 (494)
Q Consensus 154 ~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (494)
...+..++..+...+.+.|+ +++|+++|+.+.+... .+..++..+..+|...|++++|.+.|+++.+.++.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----- 92 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQ---LADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD----- 92 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred cHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----
Confidence 34456778889999999999 9999999999998643 37889999999999999999999999999876543
Q ss_pred ccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-H---hHHHHH------------HHHHHhcCC
Q 011081 234 GKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD-C---YSYSVL------------MAVFCEERR 297 (494)
Q Consensus 234 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~---~~~~~l------------i~~~~~~g~ 297 (494)
+..+|..+...|.+.|++++|...|+++.+.. |+ . ..+..+ ...+.+.|+
T Consensus 93 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 93 ------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158 (450)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68899999999999999999999999998764 44 3 555555 444889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 298 MREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
+++|..+|+.+.+.. +.+..++..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...|...|++++|...|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998764 5578899999999999999999999999998764 56789999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 011081 378 MCRKGFEPEGSTIEVL------------IGELCDKRRVFEALDILKARVVKFGLFPT--EKSYMFLIKGLCEEGKMEEAL 443 (494)
Q Consensus 378 m~~~~~~p~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 443 (494)
+.+.. +.+...+..+ ...+...|++++|...|++.+....-.+. ...|..+..++.+.|++++|.
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 98764 2234444444 78899999999999999987765432222 457888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 444 KVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+.++++.+.. +.+...|..+..+|...|++++|.+.++++++..+.
T Consensus 316 ~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 316 RVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 9999998652 446899999999999999999999999999986554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-22 Score=197.15 Aligned_cols=370 Identities=9% Similarity=-0.010 Sum_probs=303.9
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP 158 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (494)
....++++.|+..|..+.... |+..+|..+..++.+.|++++|...++.+++. .+.+.
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~ 73 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL-------------------KPDYS 73 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------CSCCH
T ss_pred HHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-------------------ChHHH
Confidence 445678999999999997554 68899999999999999999999999988762 23455
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcC-------------------------------------------
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVK------------------------------------------- 195 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~------------------------------------------- 195 (494)
.++..+..++.+.|+ +++|+..|+.+.+.+...+
T Consensus 74 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 74 KVLLRRASANEGLGK---FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence 778888999999999 9999999999887653110
Q ss_pred -----------------------------------hHhHHHHHHHHH---cCCChhHHHHHHHHHhc-----C--Ccccc
Q 011081 196 -----------------------------------VSTCNALIWEVS---RGKGVISGYEIYREVFG-----L--DSDAT 230 (494)
Q Consensus 196 -----------------------------------~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~--~~~~~ 230 (494)
...+......+. +.|++++|...|+++.. . .+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~- 229 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED- 229 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC-
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc-
Confidence 222233333333 37999999999999876 3 2110
Q ss_pred cccccccccccc-cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 231 AGIGKDVKRVVR-VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 231 ~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
.. ...+..+|..+...+...|++++|..+|+++.+.. |+..++..+...+...|++++|...++.+.
T Consensus 230 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 230 ----------EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred ----------cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 00 02357788999999999999999999999998875 448889999999999999999999999998
Q ss_pred hCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 011081 310 DKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGST 389 (494)
Q Consensus 310 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 389 (494)
+.. +.+..+|..+...|...|++++|...|+++.+.. +.+...+..+...|...|++++|...++.+.+.. +.+..+
T Consensus 298 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 374 (514)
T 2gw1_A 298 KLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEV 374 (514)
T ss_dssp TTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHH
T ss_pred hcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHH
Confidence 874 4577889999999999999999999999998875 4567789999999999999999999999998864 335678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 390 IEVLIGELCDKRRVFEALDILKARVVKFGLFPT----EKSYMFLIKGLCE---EGKMEEALKVQAEMVGKGFEPSLEIYS 462 (494)
Q Consensus 390 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (494)
+..+...+...|++++|...+++.+....-.++ ...|..+...+.. .|++++|.+.++++.+.. +.+..++.
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 453 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKI 453 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 889999999999999999999977665433333 3478899999999 999999999999998753 44688899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 463 AFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 463 ~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.+...|.+.|++++|.+.+++..+.++.
T Consensus 454 ~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 454 GLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999987664
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-19 Score=182.62 Aligned_cols=367 Identities=11% Similarity=0.038 Sum_probs=281.7
Q ss_pred HhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCCh
Q 011081 79 LGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAP 158 (494)
Q Consensus 79 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (494)
....++++.|+..|..+.... +.+..+|..+..++.+.|++++|...++.+++.. +.++
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~ 93 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------------------PDHS 93 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------TTCH
T ss_pred HHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------CchH
Confidence 445678899999999986554 4577889999999999999999999999887632 3345
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCC-------------------------------------cChH----
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLS-------------------------------------VKVS---- 197 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~-------------------------------------~~~~---- 197 (494)
.++..+..++...|+ +++|++.|+.+ ..... |+..
T Consensus 94 ~~~~~la~~~~~~g~---~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 169 (537)
T 3fp2_A 94 KALLRRASANESLGN---FTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169 (537)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH
Confidence 667777777888888 88888877533 21111 1100
Q ss_pred --------------------------hHHHHHHHHHcC--------CChhHHHHHHHHHhcCCccccccccccccccccc
Q 011081 198 --------------------------TCNALIWEVSRG--------KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRV 243 (494)
Q Consensus 198 --------------------------~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
....+...+... |++++|.++|+++....+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~--------------- 234 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV--------------- 234 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC---------------
T ss_pred HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC---------------
Confidence 111222222211 3677888888888765543
Q ss_pred ccC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 011081 244 RPN-----VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV 318 (494)
Q Consensus 244 ~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 318 (494)
.++ ..+|..+...+...|++++|...|++..+. .|+..++..+...+...|++++|.+.++.+.+.. +.+..
T Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 311 (537)
T 3fp2_A 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP 311 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH
Confidence 111 345777888899999999999999999986 4668889999999999999999999999998764 45788
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 398 (494)
+|..+...|...|++++|.+.|+++.+.. +.+...|..+...|...|++++|...++++.+.. +.+...+..+...+.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 99999999999999999999999998865 4556889999999999999999999999998875 345678889999999
Q ss_pred hcCCHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFG----LFPTEKSYMFLIKGLCEE----------GKMEEALKVQAEMVGKGFEPSLEIYSAF 464 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (494)
..|++++|.+.+++.+.... .......+......+.+. |++++|...|++..+.. +.+...|..+
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 468 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGL 468 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 99999999999997665431 111222344556677777 99999999999999752 4468889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 465 IDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 465 i~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
...|.+.|++++|.+.+++..+..+..
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999876643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-19 Score=170.50 Aligned_cols=307 Identities=11% Similarity=0.021 Sum_probs=253.9
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
+..+..+...+...|+ +++|++.|+.+.+.... +..++..+...+...|++++|.+.|+++....+.
T Consensus 3 ~~~~~~~~~~~~~~g~---~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------- 69 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQ---LADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--------- 69 (359)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Confidence 3456667788889999 99999999999986543 6788999999999999999999999999875543
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---cCHhHHHHH------------HHHHHhcCCHHHHH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE---PDCYSYSVL------------MAVFCEERRMREAE 302 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~l------------i~~~~~~g~~~~a~ 302 (494)
+...|..+...+.+.|++++|...|++..+.. + .+...+..+ ...+...|++++|.
T Consensus 70 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 70 --------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp --------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 67889999999999999999999999998763 2 244445444 57888999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
++++.+.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...|...|++++|...|+...+..
T Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 141 TFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999998764 4578899999999999999999999999998875 6678899999999999999999999999998764
Q ss_pred CCCChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 383 FEPEGSTIE------------VLIGELCDKRRVFEALDILKARVVKFGLFPTE--KSYMFLIKGLCEEGKMEEALKVQAE 448 (494)
Q Consensus 383 ~~p~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~ 448 (494)
. .+...+. .+...+...|++++|...+++.+....-.+.. ..+..+..++...|++++|.+.+++
T Consensus 219 ~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 219 Q-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2 2333332 23566889999999999999877765322211 2355677889999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 449 MVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 449 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
..+.. +.+..+|..+...+...|++++|.+.+++..+..+.
T Consensus 298 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 298 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99752 347889999999999999999999999999987654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-19 Score=180.20 Aligned_cols=355 Identities=11% Similarity=-0.018 Sum_probs=285.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHH
Q 011081 106 SSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVR 185 (494)
Q Consensus 106 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~ 185 (494)
..+......+.+.|++++|...|+.+++ ..|++.++..+..++.+.|+ +++|++.++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~~~~la~~~~~~g~---~~~A~~~~~ 63 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALE--------------------LKEDPVFYSNLSACYVSVGD---LKKVVEMST 63 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH--------------------HCCCHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh--------------------cCccHHHHHhHHHHHHHHhh---HHHHHHHHH
Confidence 4566777889999999999999999876 23567788889999999999 999999999
Q ss_pred HHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccc------------ccccc-------------
Q 011081 186 MLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGK------------DVKRV------------- 240 (494)
Q Consensus 186 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~~~~------------- 240 (494)
++.+.+.. +..++..+..+|.+.|++++|...|+++....+........ ...+.
T Consensus 64 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 142 (514)
T 2gw1_A 64 KALELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142 (514)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHhccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99987643 67889999999999999999999999998776531110000 00000
Q ss_pred -------------------------------------cccccCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHH-----
Q 011081 241 -------------------------------------VRVRPNVHTFNALMVGFYR---EGAFEKVEDVWVEMAR----- 275 (494)
Q Consensus 241 -------------------------------------~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~----- 275 (494)
.....+...+......+.. .|++++|..+|+++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp --------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh
Confidence 0001124455555555554 8999999999999987
Q ss_pred cCC--------CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 276 LGC--------EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 276 ~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
... +.+..++..+...+...|++++|...++.+.+.. |+..+|..+..+|...|++++|...|+++.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 311 2235678889999999999999999999998875 338889999999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 348 VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYM 427 (494)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 427 (494)
+.+...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+.... .+...+.
T Consensus 301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 376 (514)
T 2gw1_A 301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP--EAPEVPN 376 (514)
T ss_dssp -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST--TCSHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc--cCHHHHH
Confidence 5577889999999999999999999999999875 33667888899999999999999999997776543 3456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcccc
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGKG-FEPS----LEIYSAFIDGYMK---EGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~ 490 (494)
.+...+.+.|++++|.+.++++.+.. -.++ ...|..+...+.. .|++++|.+.++++.+..+.
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 89999999999999999999998641 1122 4488899999999 99999999999999886543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-18 Score=162.71 Aligned_cols=322 Identities=9% Similarity=0.030 Sum_probs=261.8
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHH
Q 011081 104 SLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDI 183 (494)
Q Consensus 104 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~ 183 (494)
+...+..+...+.+.|++++|...++.+++. ...++.++..+..++...|+ +++|++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~~~a~~~~~~~~---~~~A~~~ 59 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-------------------DPDNYIAYYRRATVFLAMGK---SKAALPD 59 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTC---HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------CcccHHHHHHHHHHHHHccC---HHHHHHH
Confidence 3456778888999999999999999998762 23456788888899999999 9999999
Q ss_pred HHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHH----------
Q 011081 184 VRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNAL---------- 253 (494)
Q Consensus 184 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l---------- 253 (494)
++.+.+.... +...+..+...+...|++++|.+.|+++....+. ...+...+..+
T Consensus 60 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 60 LTKVIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS--------------EQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCC--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCc--------------ccChHHHHHHHHHHHHHHHHH
Confidence 9999986533 6788999999999999999999999999876540 00144445444
Q ss_pred --HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 254 --MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 254 --i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..+|..+...|...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 688999999999999999998875 4577889999999999999999999999998874 557889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHH
Q 011081 332 EMARAEEFFREMGLSGVESSSVTFE------------HLVNGYCRAGDVDSAILVYNDMCRKGFEPEG----STIEVLIG 395 (494)
Q Consensus 332 ~~~~A~~~~~~m~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~ 395 (494)
++++|...|++..+.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+..
T Consensus 203 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 9999999999998764 34444433 2366789999999999999999886422 22 23455778
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 011081 396 ELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMK 470 (494)
Q Consensus 396 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 470 (494)
.+...|++++|.+.+++.+... +.+..+|..+...|.+.|++++|.+.|++..+. .|+ ...+..+..+...
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 8999999999999999777653 346788999999999999999999999999965 555 5666666655443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-18 Score=159.71 Aligned_cols=294 Identities=13% Similarity=0.026 Sum_probs=247.2
Q ss_pred cCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccc
Q 011081 154 CGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGI 233 (494)
Q Consensus 154 ~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (494)
...++.++..+...+...|+ +++|+++++.+.+.... +...+..++.++...|++++|...++++....+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----- 88 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCD---FKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS----- 88 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----
T ss_pred chhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----
Confidence 45566778888888999999 99999999999886543 5667777888899999999999999999876543
Q ss_pred ccccccccccccCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 234 GKDVKRVVRVRPNVHTFNALMVGFYREG-AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 234 ~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
+...|..+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|...++++.+..
T Consensus 89 ------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 89 ------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp ------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred ------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 6788999999999999 9999999999998765 4467789999999999999999999999998874
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CC
Q 011081 313 VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG--------FE 384 (494)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~ 384 (494)
+.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...|...|++++|...++++.+.. ..
T Consensus 156 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 233 (330)
T 3hym_B 156 -KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233 (330)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred -cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc
Confidence 3456778889999999999999999999999875 5678899999999999999999999999988742 12
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 011081 385 PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSA 463 (494)
Q Consensus 385 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ 463 (494)
.+..++..+...+...|++++|...+++.+.... .+...+..+..+|.+.|++++|.+.+++..+. .| +...+..
T Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 309 (330)
T 3hym_B 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTM 309 (330)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHH
Confidence 3456888999999999999999999998776542 35678889999999999999999999999864 44 6778888
Q ss_pred HHHHH-HhcCCHH
Q 011081 464 FIDGY-MKEGNVE 475 (494)
Q Consensus 464 li~~~-~~~g~~~ 475 (494)
+..++ ...|+.+
T Consensus 310 l~~~~~~~~g~~~ 322 (330)
T 3hym_B 310 LGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHTTTTC--
T ss_pred HHHHHHHHhCchh
Confidence 88877 4556644
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-18 Score=161.23 Aligned_cols=276 Identities=11% Similarity=-0.053 Sum_probs=235.9
Q ss_pred CCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011081 192 LSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWV 271 (494)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (494)
...+...+..+...+...|++++|.++|+++....+. +...+..++..+.+.|++++|..+++
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~ 80 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-----------------HASCLPVHIGTLVELNKANELFYLSH 80 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CTTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------ChhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 3446677788888999999999999999999876543 55667778889999999999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011081 272 EMARLGCEPDCYSYSVLMAVFCEER-RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVES 350 (494)
Q Consensus 272 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 350 (494)
++.+.. +.+...+..+...+...| ++++|.+.|+...+.. +.+...|..+...|...|++++|.+.|+++.+.. +.
T Consensus 81 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 157 (330)
T 3hym_B 81 KLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KG 157 (330)
T ss_dssp HHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TT
T ss_pred HHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cc
Confidence 998874 446788999999999999 9999999999998875 4467889999999999999999999999998875 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-------CCCCH
Q 011081 351 SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFG-------LFPTE 423 (494)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~ 423 (494)
+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.+.... ...+.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 56778889999999999999999999998875 44678889999999999999999999997776431 13345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 424 KSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.++..+..+|.+.|++++|.+.+++..+.. +.+...|..+...+.+.|++++|.+.+++..+..+
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 688999999999999999999999999763 34678899999999999999999999999887654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-17 Score=167.70 Aligned_cols=354 Identities=12% Similarity=0.056 Sum_probs=267.7
Q ss_pred HhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHH
Q 011081 105 LSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIV 184 (494)
Q Consensus 105 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~ 184 (494)
...|......+.+.|++++|...++.+++. .+.++.++..+..+|.+.|+ +++|++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 82 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-------------------DPNEPVFYSNISACYISTGD---LEKVIEFT 82 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTC---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-------------------CCCCcHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 346777888999999999999999998762 33456788889999999999 99999999
Q ss_pred HHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccc---------ccc----cccc--------cc
Q 011081 185 RMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIG---------KDV----KRVV--------RV 243 (494)
Q Consensus 185 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~~----~~~~--------~~ 243 (494)
+++.+.+.. +..++..+..++...|++++|.+.|+ .....+....... ..+ .+.. ..
T Consensus 83 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 160 (537)
T 3fp2_A 83 TKALEIKPD-HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160 (537)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CC
T ss_pred HHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 999987643 78889999999999999999999996 4433332110000 000 0000 00
Q ss_pred ccCHH------------------------------HHHHHHHHHHh--------cCCHhHHHHHHHHHHHcCCCcC----
Q 011081 244 RPNVH------------------------------TFNALMVGFYR--------EGAFEKVEDVWVEMARLGCEPD---- 281 (494)
Q Consensus 244 ~p~~~------------------------------~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~---- 281 (494)
.|+.. .+..+...+.. .|++++|..+++++.+.. |+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~ 238 (537)
T 3fp2_A 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPL 238 (537)
T ss_dssp CCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHH
T ss_pred cchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchh
Confidence 11111 22222222211 247899999999988763 43
Q ss_pred ----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011081 282 ----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEH 357 (494)
Q Consensus 282 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 357 (494)
..++..+...+...|++++|...++.+.+. .|+..+|..+...|...|++++|.+.|+++.+.. +.+..+|..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 235677778888999999999999999887 4568899999999999999999999999998875 567889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 358 LVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG 437 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 437 (494)
+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+... +.+...+..+...+...|
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhC
Confidence 9999999999999999999998865 3356788899999999999999999999777664 244668888999999999
Q ss_pred CHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcccc
Q 011081 438 KMEEALKVQAEMVGKG-----FEPSLEIYSAFIDGYMKE----------GNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 438 ~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~ 490 (494)
++++|.+.|+++.+.. .......+..+...+... |++++|...+++..+..+.
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 9999999999987641 111233345556677777 9999999999999987653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-20 Score=187.61 Aligned_cols=165 Identities=10% Similarity=0.101 Sum_probs=135.9
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH---cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMAR---LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYN 321 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 321 (494)
--..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3568999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHH
Q 011081 322 TIIGGFCEIGEM-ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE------GSTIEVLI 394 (494)
Q Consensus 322 ~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li 394 (494)
+||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999985 78999999999999999999999999876654 344444444 3345544 55556666
Q ss_pred HHHHhcC---------CHHHHHHHHHHHH
Q 011081 395 GELCDKR---------RVFEALDILKARV 414 (494)
Q Consensus 395 ~~~~~~~---------~~~~a~~~~~~~~ 414 (494)
+.|.+.+ ..++-.+.|++.+
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 7776655 2355555555433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-18 Score=163.32 Aligned_cols=290 Identities=10% Similarity=-0.028 Sum_probs=230.1
Q ss_pred hcCChhcHHHHHH-HHHHHHhCCCC-c--ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc
Q 011081 170 EVKNIEKIETCVD-IVRMLMSRGLS-V--KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP 245 (494)
Q Consensus 170 ~~~~~~~~~~a~~-~~~~m~~~g~~-~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (494)
..|+ +++|++ .+++..+.... | +...+..+...+.+.|++++|...|+++....+.
T Consensus 37 ~~~~---~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------------- 96 (368)
T 1fch_A 37 WLSD---YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK----------------- 96 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-----------------
T ss_pred HHHH---HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------
Confidence 3456 888887 77765543221 1 3566888899999999999999999999876543
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH---
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT--- 322 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--- 322 (494)
+..+|..+...+.+.|++++|+..|+++.+.. +.+..++..+...|...|++++|.+.++.+.+... .+...+..
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 174 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEE 174 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHH
Confidence 78899999999999999999999999998875 45788899999999999999999999999988742 23333321
Q ss_pred ------------HHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 011081 323 ------------IIGGFCEIGEMARAEEFFREMGLSGVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGS 388 (494)
Q Consensus 323 ------------li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 388 (494)
.+..+...|++++|...|+++.+.. +. +..++..+...|...|++++|...|+++.+.. +.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 2444448999999999999998864 22 58899999999999999999999999998864 34577
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CCH
Q 011081 389 TIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFE----------PSL 458 (494)
Q Consensus 389 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p~~ 458 (494)
++..+...+...|++++|+..+++.+... +.+...+..+..+|.+.|++++|.+.|+++.+..-. ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 89999999999999999999999777654 245778999999999999999999999999864111 126
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 459 EIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 459 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
.+|..+..+|...|+.++|..++++-+
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 899999999999999999999876443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-18 Score=161.21 Aligned_cols=266 Identities=11% Similarity=-0.023 Sum_probs=192.8
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+.+.|++++|.+.|+++....+. +..+|..+...|.+.|++++|+..|+++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-----------------DAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445667777777777888888888777665433 67777778888888888888888888777
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD----------VVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+ ...+..+...|.+.|++++|.++|+++.
T Consensus 127 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 127 ELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred hcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 664 3356777777788888888888888887776642 111 2233445778888888999999998888
Q ss_pred hCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 011081 345 LSGVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT 422 (494)
Q Consensus 345 ~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 422 (494)
+.. +. +..++..+...|...|++++|...|+++++.. +.+..++..+...|...|++++|+..|++.+... +.+
T Consensus 205 ~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~ 280 (365)
T 4eqf_A 205 HQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGF 280 (365)
T ss_dssp HHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc
Confidence 764 22 67888888888889999999999998888764 3467788888888999999999999988776653 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 423 EKSYMFLIKGLCEEGKMEEALKVQAEMVGKG---FE--------PSLEIYSAFIDGYMKEGNVEMATMLRKE 483 (494)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 483 (494)
..+|..+..+|.+.|++++|.+.|+++.+.. .. .+..+|..+..++...|+.+.+.++.++
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7788888899999999999999999887641 01 1357888899999999999888877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=159.18 Aligned_cols=266 Identities=10% Similarity=-0.037 Sum_probs=218.5
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
...+..+...+.+.|+ +++|++.|+++.+.... +..++..+..+|...|++++|.+.|+++....+.
T Consensus 65 ~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------- 131 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGD---LPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN--------- 131 (365)
T ss_dssp CTTHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred hhHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------
Confidence 3457788889999999 99999999999987543 7889999999999999999999999999876543
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-----------HhHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD-----------CYSYSVLMAVFCEERRMREAEKLWE 306 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~ 306 (494)
+..+|..+...|.+.|++++|+..|+++.+.. |+ ...+..+...+.+.|++++|..+|+
T Consensus 132 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 132 --------NLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 68899999999999999999999999998753 22 2233445788999999999999999
Q ss_pred HHHhCCCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 307 EMRDKNVE-HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 307 ~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
++.+.... .+..+|..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|...|+++++.. +.
T Consensus 202 ~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 279 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PG 279 (365)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 99887422 168899999999999999999999999998875 5678899999999999999999999999998864 33
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF----------PTEKSYMFLIKGLCEEGKMEEALKVQAE 448 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (494)
+..++..+...|...|++++|...|++.+....-. .+...|..+..++...|+.+.+.++..+
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 57889999999999999999999999776543111 1256789999999999999998887664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-17 Score=154.34 Aligned_cols=266 Identities=9% Similarity=-0.052 Sum_probs=176.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.+..+...+...|++++|.++|+++....+. +..+|..+...+.+.|++++|...++++.+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLD 85 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555555566666666666665543322 45556666666666666666666666665543
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH--------------HH-HHHccCCHHHHHHHHHH
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI--------------IG-GFCEIGEMARAEEFFRE 342 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~ 342 (494)
+.+..++..+...|...|++++|.+.++.+.+.. +.+...+..+ .. .+...|++++|.+.+++
T Consensus 86 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 86 -PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 3345556666666666666666666666665542 1122222222 22 36677788888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 011081 343 MGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT 422 (494)
Q Consensus 343 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 422 (494)
+.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++.+... +.+
T Consensus 164 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 239 (327)
T 3cv0_A 164 ALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGY 239 (327)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC
Confidence 87764 4467778888888888888888888888887764 3356677888888888888888888888666553 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 423 EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-----------SLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
...+..+...|.+.|++++|.+.+++..+..-.. +...|..+..++.+.|++++|..++++.++
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6678888888888899999998888887642111 367888888888999999999888765443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-14 Score=144.14 Aligned_cols=340 Identities=14% Similarity=0.062 Sum_probs=281.2
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHH----CCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCC
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSR----ARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSA 157 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (494)
.++.+.|+..|..+... -+..++..+-..+.. .+++++|...++...+.+ +
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------------------~ 110 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------------------L 110 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------C
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------------C
Confidence 56788899999887644 256788888888888 899999999999887643 2
Q ss_pred hhhHHHHHHHHHh----cCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHc----CCChhHHHHHHHHHhcCCccc
Q 011081 158 PFVFDLLIKCCLE----VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSR----GKGVISGYEIYREVFGLDSDA 229 (494)
Q Consensus 158 ~~~~~~li~~~~~----~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 229 (494)
+..+..|...|.. .++ .++|++.|++..+.| +...+..|...|.. .++.++|.+.|++..+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~---- 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVD---KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ---- 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----
Confidence 3444555566666 667 999999999998876 57778888888887 78999999999998663
Q ss_pred ccccccccccccccccCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHH
Q 011081 230 TAGIGKDVKRVVRVRPNVHTFNALMVGFYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREA 301 (494)
Q Consensus 230 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a 301 (494)
.+...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|
T Consensus 181 ---------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 181 ---------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp ---------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ---------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 267888889999988 899999999999998875 56778888888886 8999999
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHH
Q 011081 302 EKLWEEMRDKNVEHDVVAYNTIIGGFCE----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA-----GDVDSAI 372 (494)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~ 372 (494)
.++|+...+.| +...+..+...|.. .+++++|++.|++..+.| +...+..+...|... ++.++|.
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999998875 66778888888887 899999999999998765 456777788888887 8999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 011081 373 LVYNDMCRKGFEPEGSTIEVLIGELCDKR---RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE----EGKMEEALKV 445 (494)
Q Consensus 373 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 445 (494)
..|+...+.| +...+..+...|...| +.++|++.|++.... .+...+..+...|.. .+++++|.+.
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999876 4456677777777756 789999999976654 367788888899988 8999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcccc
Q 011081 446 QAEMVGKGFEPSLEIYSAFIDGYMK----EGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~ 490 (494)
|++..+.| +...+..|...|.+ .++.++|.+.|++..+.++.
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 99999875 57788888888888 89999999999999998854
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=183.59 Aligned_cols=166 Identities=11% Similarity=0.113 Sum_probs=134.6
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRD---KNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
.--..||++||++||+.|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34467999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC------HHHHHH
Q 011081 356 EHLVNGYCRAGD-VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT------EKSYMF 428 (494)
Q Consensus 356 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~ 428 (494)
|+||.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+.+ .++.+++ + ..++.|+ ..+...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrk-v-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHK-V-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGG-G-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHH-h-CcccCCCCCCcccccchHH
Confidence 999999999998 4789999999999999999999999987666543 3333331 2 2344444 334455
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHHH
Q 011081 429 LIKGLCEEG---------KMEEALKVQAEMV 450 (494)
Q Consensus 429 li~~~~~~g---------~~~~A~~~~~~m~ 450 (494)
|.+.|.+.+ ..++-.++|++-+
T Consensus 278 L~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp THHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 666666555 2455556665544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-17 Score=153.54 Aligned_cols=268 Identities=12% Similarity=0.008 Sum_probs=223.2
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
...+..+...+.+.|+ +++|+..|+++.+.... +..++..+..++...|++++|.+.|+++....+.
T Consensus 64 ~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------- 130 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGD---LPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD--------- 130 (368)
T ss_dssp CSSHHHHHHHHHHTTC---HHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred hHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC---------
Confidence 4567778888999999 99999999999987543 7788999999999999999999999999876543
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHH---------------HHHHHHhcCCHHHHH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSV---------------LMAVFCEERRMREAE 302 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g~~~~a~ 302 (494)
+..+|..+...|...|++++|...++++.+.. +.+...+.. .+..+...|++++|.
T Consensus 131 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 201 (368)
T 1fch_A 131 --------NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVK 201 (368)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHH
Confidence 78899999999999999999999999998864 222222221 233444899999999
Q ss_pred HHHHHHHhCCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 303 KLWEEMRDKNVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 303 ~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
..|+++.+..... +..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|...|+++.+.
T Consensus 202 ~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 202 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998874221 57899999999999999999999999998864 557889999999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF---------PTEKSYMFLIKGLCEEGKMEEALKVQAEM 449 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (494)
. +.+...+..+...+...|++++|...|++.+....-. ....+|..+..+|...|+.++|..++.+.
T Consensus 281 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 281 Q-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 4 3467789999999999999999999999776543111 11678999999999999999999887643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=149.39 Aligned_cols=267 Identities=11% Similarity=-0.060 Sum_probs=221.5
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
..+-.+...+...|+ +++|+++++++.+.... +..++..+..++...|++++|.+.|+++....+.
T Consensus 22 ~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------- 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLAN---LAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---------- 87 (327)
T ss_dssp SCHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----------
Confidence 455667788889999 99999999999986543 7788999999999999999999999999775543
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHH--------------HH-HHHhcCCHHHHHH
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVL--------------MA-VFCEERRMREAEK 303 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~ 303 (494)
+..+|..+...|...|++++|...++++.+.. +.+...+..+ .. .+...|++++|.+
T Consensus 88 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 88 -------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 78889999999999999999999999998763 2223333333 22 3778899999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011081 304 LWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF 383 (494)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 383 (494)
.++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+..
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 999998774 4478899999999999999999999999998875 5678899999999999999999999999998864
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 384 EPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLF----------PTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 384 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
+.+..++..+...+...|++++|.+.+++.+....-. .+...|..+..++.+.|+.++|..++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3467788999999999999999999999776653210 036788899999999999999999887543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-15 Score=138.63 Aligned_cols=256 Identities=11% Similarity=-0.002 Sum_probs=207.0
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY 283 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 283 (494)
+-....|++..|...++......+. ........+..+|...|++++|+..++. . -.|+..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~----------------~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~ 66 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE----------------RDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQ 66 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch----------------hhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHH
Confidence 3445578999999988877543321 1234666778999999999999987754 2 366778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
++..+...+...++.++|.+.++++...+..| +...+..+...|.+.|++++|++.|++ +.+...+..++..|
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 88999999999999999999999998876444 566777888999999999999999987 56788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 363 CRAGDVDSAILVYNDMCRKGFEPEGSTI---EVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKM 439 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 439 (494)
.+.|++++|.+.|+.+.+.. |+.... ...+..+...|++++|..+|++.+... +.+...|+.+..++.+.|++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCH
Confidence 99999999999999999874 553211 223344455699999999999877764 46788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcccc
Q 011081 440 EEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEM-ATMLRKEMFENQVR 490 (494)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~ 490 (494)
++|.+.|++.++.. +-+..++..++..+...|+.++ +.++++++.+.+|.
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 99999999998752 3468899999999999999876 67899999886654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-13 Score=133.73 Aligned_cols=320 Identities=11% Similarity=0.050 Sum_probs=267.1
Q ss_pred CHhHHHHHHHHHHH----CCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChh
Q 011081 104 SLSSYATIIHILSR----ARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLE----VKNIE 175 (494)
Q Consensus 104 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~----~~~~~ 175 (494)
+..++..+-..+.. .+++++|...++...+.+ ++.++..|...|.. .++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~-- 94 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------YTPAEYVLGLRYMNGEGVPQD-- 94 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCC--
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCC--
Confidence 56777777777877 789999999999887643 24455566666776 778
Q ss_pred cHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHc----CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHH
Q 011081 176 KIETCVDIVRMLMSRGLSVKVSTCNALIWEVSR----GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFN 251 (494)
Q Consensus 176 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 251 (494)
.++|++.|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 95 -~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------------------~~~a~~ 151 (490)
T 2xm6_A 95 -YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-------------------RDSGQQ 151 (490)
T ss_dssp -HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------------CHHHHH
T ss_pred -HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------------------CHHHHH
Confidence 999999999998876 67778888888888 789999999999986642 567788
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 252 ALMVGFYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 252 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
.+...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|.++|+...+.| +...+..+
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 225 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHL 225 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 88888887 789999999999998875 67888889999988 899999999999998876 67788889
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011081 324 IGGFCE----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFEPEGSTIEVLIG 395 (494)
Q Consensus 324 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 395 (494)
...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|+..|+...+.| +...+..+..
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH 299 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 988886 889999999999998865 45677777778877 899999999999998876 4556777777
Q ss_pred HHHhc-----CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 396 ELCDK-----RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG---KMEEALKVQAEMVGKGFEPSLEIYSAFIDG 467 (494)
Q Consensus 396 ~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 467 (494)
.|... ++.++|+..+++.... + +...+..+...|.+.| +.++|.++|++..+.| +...+..|...
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 372 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNA 372 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 78877 8999999999966553 3 5567778888888766 8899999999999864 67888889999
Q ss_pred HHh----cCCHHHHHHHHHHHHHcc
Q 011081 468 YMK----EGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 468 ~~~----~g~~~~a~~~~~~m~~~~ 488 (494)
|.. .+++++|.+++++..+.+
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 988 899999999999998865
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-15 Score=138.33 Aligned_cols=275 Identities=9% Similarity=0.043 Sum_probs=211.5
Q ss_pred HHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc
Q 011081 166 KCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP 245 (494)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (494)
+-....|+ ++.|+...+................+.++|...|+++.|...++.. -.|
T Consensus 7 ~~~~~~g~---y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--------------------~~~ 63 (291)
T 3mkr_A 7 KNAFYIGS---YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--------------------SAP 63 (291)
T ss_dssp HHHHHTTC---HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--------------------SCH
T ss_pred HHHHHHHH---HHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--------------------CCh
Confidence 33455677 9999998877654332222345566788999999999998765432 156
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD-CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
+..++..+...+...|+.++|++.++++...+..|+ ...+..+...+...|++++|++.++. +.+...+..++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 788999999999999999999999999988765554 55667777899999999999999987 46888999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGVESSSVTF---EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR 401 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 401 (494)
..|.+.|++++|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC
Confidence 99999999999999999998874 443211 223344445689999999999999873 557888999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 402 RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEE-ALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
++++|...+++.+.... -+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++..
T Consensus 215 ~~~eA~~~l~~al~~~p--~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDS--GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 99999999998887653 466788889999999999876 67899998864 565332 2233444455555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-13 Score=137.19 Aligned_cols=387 Identities=10% Similarity=0.069 Sum_probs=263.0
Q ss_pred ccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHH-----------
Q 011081 82 KNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKT----------- 150 (494)
Q Consensus 82 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----------- 150 (494)
.++.+.|..+|..+.... +.+...|...+..+.+.|+++.|..+|++++... |+..+|......
T Consensus 25 ~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp SSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTH
T ss_pred hCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhH
Confidence 466777888888876443 4567778888888888888888888888888754 233343333221
Q ss_pred -------hh----hcC---CChhhHHHHHHHHHh---------cCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHH-
Q 011081 151 -------YR----ECG---SAPFVFDLLIKCCLE---------VKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEV- 206 (494)
Q Consensus 151 -------~~----~~~---~~~~~~~~li~~~~~---------~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~- 206 (494)
|. .+| .+...|...+....+ .|+ +++|..+|++.++.........|.......
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~ 176 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR---ITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 176 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH---HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH---HHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 10 112 123444444444333 466 888999998888732111123333322211
Q ss_pred ------------HcCCChhHHHHHHHHHhcCCcccccccccccccc-cccccC--------HHHHHHHHHHHHhc----C
Q 011081 207 ------------SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRV-VRVRPN--------VHTFNALMVGFYRE----G 261 (494)
Q Consensus 207 ------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~--------~~~~~~li~~~~~~----g 261 (494)
.+.+++..|..++.+...... ...+. ..+.|+ ...|...+...... +
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~--------~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 177 GINIHLAKKMIEDRSRDYMNARRVAKEYETVMK--------GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH--------HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 123455666666655211000 00000 012333 35676666443332 2
Q ss_pred CH----hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 262 AF----EKVEDVWVEMARLGCEPDCYSYSVLMAVFCE-------ERRMR-------EAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 262 ~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
+. +++..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 22 37788999988763 4467788888888876 69987 899999999863234568899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhc
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESS--SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGE-LCDK 400 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~ 400 (494)
+..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|+...+.. +.+...|...... +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHc
Confidence 99999999999999999999985 443 3589999999999999999999999998763 2223333332222 3468
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHH
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKG-FEPS--LEIYSAFIDGYMKEGNVEMA 477 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~a 477 (494)
|+.++|..+|+..++..+ -+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999998887652 357789999999999999999999999999863 2332 55898889988999999999
Q ss_pred HHHHHHHHHcccc
Q 011081 478 TMLRKEMFENQVR 490 (494)
Q Consensus 478 ~~~~~~m~~~~~~ 490 (494)
.++.+++.+.-+.
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 9999999887653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=9e-18 Score=157.92 Aligned_cols=283 Identities=12% Similarity=0.090 Sum_probs=128.1
Q ss_pred HCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcCh
Q 011081 117 RARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKV 196 (494)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 196 (494)
+.|++++|.++++++ +.+.+|..|..++.+.|+ +++|++.|.+. +|.
T Consensus 15 ~~~~ld~A~~fae~~------------------------~~~~vWs~La~A~l~~g~---~~eAIdsfika------~D~ 61 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------------------------NEPAVWSQLAKAQLQKGM---VKEAIDSYIKA------DDP 61 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------------------------CChHHHHHHHHHHHHcCC---HHHHHHHHHcC------CCH
Confidence 446677777777654 224588889999999999 99999999642 477
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
.+|..++.++...|++++|.+.++...+. .++..+.+.++.+|.+.|++.++.++++
T Consensus 62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----- 118 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWEELVKYLQMARKK------------------ARESYVETELIFALAKTNRLAELEEFIN----- 118 (449)
T ss_dssp -----------------------------------------------------------------CHHHHTTTTT-----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh------------------CccchhHHHHHHHHHHhCCHHHHHHHHc-----
Confidence 78999999999999999999977766542 3456778899999999999999888884
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
.|+..+|+.+...|...|.+++|..+|..+ ..|..++.++.+.|++++|.+.++++ .++.+|.
T Consensus 119 --~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk 181 (449)
T 1b89_A 119 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 181 (449)
T ss_dssp --CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHH
Confidence 367779999999999999999999999976 47899999999999999999999988 2678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEE 436 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 436 (494)
.++.+|...|+++.|......+. ..|+ -...++..|.+.|++++|+.+++..+... +-....|+-+.-+|++-
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhc
Confidence 99999999999999966555422 2333 35568888999999999999998766433 34566777777777764
Q ss_pred CCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 011081 437 GKMEEALKVQAEMVGK-GFEP------SLEIYSAFIDGYMKEGNVEMATML 480 (494)
Q Consensus 437 g~~~~A~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~~~a~~~ 480 (494)
+.++.++-++...++ .++| +...|..+.-.|.+.++++.|...
T Consensus 255 -~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 255 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp -CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 334333333333222 3333 355688888888899999988764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-16 Score=146.95 Aligned_cols=282 Identities=12% Similarity=0.097 Sum_probs=133.6
Q ss_pred hccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhh
Q 011081 81 LKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFV 160 (494)
Q Consensus 81 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (494)
..++.+.|.+++..+. .+.+|..+..++.+.|++++|++.|... +++.+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------------------------~D~~~ 63 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------------------DDPSS 63 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------------------CCHHH
Confidence 3456788999988752 2359999999999999999999888532 34567
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccc
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRV 240 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
|..++.++...|+ +++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++
T Consensus 64 y~~V~~~ae~~g~---~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------------- 118 (449)
T 1b89_A 64 YMEVVQAANTSGN---WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------------- 118 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTT--------------------
T ss_pred HHHHHHHHHhCCC---HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------------------
Confidence 8888889999999 99999987777663 4467888999999999999998876652
Q ss_pred cccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011081 241 VRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 241 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
.|+..+|+.+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+..+ .++.+|
T Consensus 119 ---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~W 180 (449)
T 1b89_A 119 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 180 (449)
T ss_dssp ---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHH
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhH
Confidence 357779999999999999999999999976 47899999999999999999999988 288999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
..++.+|+..|+++.|......+ ...+.-...++..|.+.|++++|..+++..+... +-....|+.+...|++-
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 99999999999999996665543 2333345578999999999999999999988765 44566777777666654
Q ss_pred --CCHHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 011081 401 --RRVFEALDILKARVVKFGLFP------TEKSYMFLIKGLCEEGKMEEALKV 445 (494)
Q Consensus 401 --~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~ 445 (494)
+++.+.++.|.. .-+++| +...|.-++..|...++++.|...
T Consensus 255 ~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 255 KPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 345555555542 223333 345688899999999999988763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-13 Score=137.84 Aligned_cols=342 Identities=10% Similarity=0.002 Sum_probs=239.0
Q ss_pred CCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHH
Q 011081 102 KHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCV 181 (494)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~ 181 (494)
+-+..+|..++.. .+.|++++|+.+++.+++. .+.+...|...+..+.+.|+ .++|.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-------------------~P~~~~~w~~~~~~~~~~~~---~~~a~ 66 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-------------------FPSSGRFWKLYIEAEIKAKN---YDKVE 66 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-------------------CTTCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-------------------CCCCHHHHHHHHHHHHhcCC---HHHHH
Confidence 4477889999984 7889999999999999873 33455677778888888899 99999
Q ss_pred HHHHHHHhCCCCcChHhHHHHHHH-HHcCCChhHHHH----HHHHHhcCCcccccccccccccccccc-cCHHHHHHHHH
Q 011081 182 DIVRMLMSRGLSVKVSTCNALIWE-VSRGKGVISGYE----IYREVFGLDSDATAGIGKDVKRVVRVR-PNVHTFNALMV 255 (494)
Q Consensus 182 ~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~li~ 255 (494)
++|++.++.. |++..|..++.. ....|+.+.|.+ +|+..+... |.. ++...|...+.
T Consensus 67 ~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~---------------g~~~~~~~~w~~~~~ 129 (530)
T 2ooe_A 67 KLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI---------------GMEIMSYQIWVDYIN 129 (530)
T ss_dssp HHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT---------------TTSTTCHHHHHHHHH
T ss_pred HHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC---------------CCCcccHHHHHHHHH
Confidence 9999998854 577777777753 345677777765 666654321 111 24566666666
Q ss_pred HHHh---------cCCHhHHHHHHHHHHHcCCCcCHhHHH----------------------------------------
Q 011081 256 GFYR---------EGAFEKVEDVWVEMARLGCEPDCYSYS---------------------------------------- 286 (494)
Q Consensus 256 ~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~~~---------------------------------------- 286 (494)
...+ .|++++|..+|++..+.........|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~ 209 (530)
T 2ooe_A 130 FLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMK 209 (530)
T ss_dssp HHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5443 566777777777766521111112222
Q ss_pred -------------------------HHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----
Q 011081 287 -------------------------VLMAVFCEE----RRM----REAEKLWEEMRDKNVEHDVVAYNTIIGGFCE---- 329 (494)
Q Consensus 287 -------------------------~li~~~~~~----g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 329 (494)
..+...... ++. +.|..+|++..... +.+...|..++..+.+
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~ 288 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKL 288 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchh
Confidence 111111000 111 24444555555432 3356677777777765
Q ss_pred ---cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHH
Q 011081 330 ---IGEMA-------RAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE--GSTIEVLIGEL 397 (494)
Q Consensus 330 ---~g~~~-------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 397 (494)
.|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+.+++. .|+ ...|..++..+
T Consensus 289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 289 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFA 366 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHH
T ss_pred hhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHH
Confidence 68887 89999999986323556889999999999999999999999999985 444 24788888888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKG-LCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEM 476 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 476 (494)
.+.|+.++|.++|++.+..... +...|...+.. +...|+.++|.++|++.++.. +.+...|..++..+.+.|+.++
T Consensus 367 ~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhh
Confidence 8999999999999977754322 22333322222 346899999999999998752 3368899999999999999999
Q ss_pred HHHHHHHHHHccc
Q 011081 477 ATMLRKEMFENQV 489 (494)
Q Consensus 477 a~~~~~~m~~~~~ 489 (494)
|+.+|++.+..++
T Consensus 444 Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 444 TRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-13 Score=136.16 Aligned_cols=349 Identities=11% Similarity=-0.033 Sum_probs=234.1
Q ss_pred CCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhh-h-cCCChhhHHHHHHHHHhcCChhcHHHH
Q 011081 103 HSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYR-E-CGSAPFVFDLLIKCCLEVKNIEKIETC 180 (494)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~~~~a 180 (494)
.....||.+..++...|++++|++.++..++- ... ... . ......+|+.+..+|...|+ +++|
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~---------~~~---~~~~~~~~~~~~~~~nla~~y~~~g~---~~~A 113 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEEL---------IQQ---EHADQAEIRSLVTWGNYAWVYYHMGR---LSDV 113 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHH---HSGGGCTTTTHHHHHHHHHHHHHTTC---HHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------HHh---cCccccchHHHHHHHHHHHHHHHcCC---hHHH
Confidence 34568999999999999999999999887651 000 000 0 11234678889999999999 9999
Q ss_pred HHHHHHHHhCC------CCc-ChHhHHHHHHHHHc--CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHH
Q 011081 181 VDIVRMLMSRG------LSV-KVSTCNALIWEVSR--GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFN 251 (494)
Q Consensus 181 ~~~~~~m~~~g------~~~-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 251 (494)
...+++..+.. ..+ ...++..+..++.. .+++++|.+.|+++++.+|. +...+.
T Consensus 114 ~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-----------------~~~~~~ 176 (472)
T 4g1t_A 114 QIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-----------------NPEFTS 176 (472)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-----------------CHHHHH
T ss_pred HHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-----------------CHHHHH
Confidence 99998876521 111 34556666555554 45789999999999876554 455555
Q ss_pred HHHHH---HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 252 ALMVG---FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 252 ~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
.+... +...++.++|++.+++..+.. +.+..++..+...+.. .|++++|.+++++..... +.+..++..+.
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg 254 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHH
Confidence 55544 345678888999998887764 3355666666555554 467788999999887764 55778889999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCC
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA-------------------GDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p 385 (494)
..|.+.|++++|...|++..+.. +-+..++..+...|... +..++|...++...+.+ +.
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 332 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DN 332 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cc
Confidence 99999999999999999988764 45566777666655432 23567788888877754 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH----HHHHHHH-HHHhcCCHHHHHHHHHHHHhCC-------
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEK----SYMFLIK-GLCEEGKMEEALKVQAEMVGKG------- 453 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m~~~~------- 453 (494)
+..++..+...+...|++++|++.|++.+... |+.. .+..+.. .+...|+.++|+..|.+.++..
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~ 409 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE 409 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence 56778888899999999999999999766542 3332 2222222 2346789999999888876531
Q ss_pred ----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 454 ----------------FEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 454 ----------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
-+.+..+|..|...|...|++++|++.|++.++.+..
T Consensus 410 ~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 410 KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 1234668888999999999999999999999987653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-14 Score=128.44 Aligned_cols=228 Identities=10% Similarity=0.071 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV--EHD----VVA 319 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~ 319 (494)
....|..+...+...|++++|+.+|++..+.. .+..++..+...+...|++++|.+.++...+... .++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 45778899999999999999999999999887 7888999999999999999999999999876521 112 588
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD 399 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 399 (494)
|..+...|.+.|++++|.+.|++..+. .|+. ..+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 999999999999999999999999885 3443 45667788999999999998864 3356778888999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 400 KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.|++++|...+++.+.... .+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..++.+.|++++|.+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999998777643 467889999999999999999999999999763 4458889999999999999999999
Q ss_pred HHHHHHHcc
Q 011081 480 LRKEMFENQ 488 (494)
Q Consensus 480 ~~~~m~~~~ 488 (494)
.+++..+..
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999877
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-12 Score=136.36 Aligned_cols=312 Identities=14% Similarity=0.148 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHcCCC-CCChHHHHHHHHHHhhhcCCC----------hhhHHHHHHHHHhcCCh
Q 011081 106 SSYATIIHILSRARLIGPARDVIRVALRSPE-NDPKLKLFEVLVKTYRECGSA----------PFVFDLLIKCCLEVKNI 174 (494)
Q Consensus 106 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~----------~~~~~~li~~~~~~~~~ 174 (494)
.--...+++|...|++.+|+++++.++..+. +.....+-+.++.+.-+..+. ......+...+...|.
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgl- 1064 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNEL- 1064 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCC-
Confidence 3344566777788888888888888875432 223333444444433333221 1112335666777777
Q ss_pred hcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHH
Q 011081 175 EKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALM 254 (494)
Q Consensus 175 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 254 (494)
+++|.++|++.. -.....+.++. ..+++++|.+++++.. +..+|..+.
T Consensus 1065 --yEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn----------------------~p~vWsqLA 1112 (1630)
T 1xi4_A 1065 --FEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN----------------------EPAVWSQLA 1112 (1630)
T ss_pred --HHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC----------------------CHHHHHHHH
Confidence 888888887752 12222233322 5566777777776551 466777788
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH
Q 011081 255 VGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMA 334 (494)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (494)
.++.+.|++++|++.|.+. -|...|..++..|.+.|++++|.+.+...++.. ++....+.++.+|++.++++
T Consensus 1113 KAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH
Confidence 8888888888888877543 356677778888888888888888887766653 33333445777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 335 RAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
+...+. . .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++.
T Consensus 1185 ele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1185 ELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 533332 1 345566666777777777777777777774 36777777777777777777777632
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 415 VKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 415 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
.+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+.
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3445666666666666666666554432 233444555666666666666666666655543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-14 Score=126.94 Aligned_cols=225 Identities=9% Similarity=0.004 Sum_probs=171.7
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVK 238 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
.++..+...+...|+ +++|++.|++..+.. .+..++..+..++...|++++|.+.|+++....+.
T Consensus 6 ~~~~~~g~~~~~~~~---~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------- 70 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQ---FDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE---------- 70 (258)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc----------
Confidence 466778888999999 999999999999987 68899999999999999999999999999764332
Q ss_pred cccccccC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 239 RVVRVRPN----VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 239 ~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 314 (494)
..++ ..+|..+...+.+.|++++|...|++..+. .|+. ..+.+.|++++|...++.+.... +
T Consensus 71 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~ 136 (258)
T 3uq3_A 71 ----MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-P 136 (258)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-H
T ss_pred ----cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-c
Confidence 0111 688899999999999999999999998875 3442 34666777888888888887763 3
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 315 HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
.+...|..+...|...|++++|...|++..+.. +.+...|..+...|...|++++|...|+..++.. +.+...+..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~ 214 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKA 214 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHH
Confidence 355677777788888888888888888877654 4466777777777777777777777777776653 22455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011081 395 GELCDKRRVFEALDILKARV 414 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~ 414 (494)
..+...|++++|.+.++..+
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 66666666666666666544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-14 Score=125.34 Aligned_cols=194 Identities=11% Similarity=0.012 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+.+.|++++|...|++.+..+|. +...|..+...+.+.|++++|+..|++..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-----------------DPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444445555555555555555555444332 44445555555555555555555555554
Q ss_pred HcCCCcCHhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEE-----------RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
+.. +.+...+..+...+.+. |++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.
T Consensus 67 ~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 67 ART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 442 22334444444444444 44444444444444332 123334444444444444444444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011081 344 GLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDIL 410 (494)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 410 (494)
.+.. .+...+..+...|...|++++|...|+..++.. +.+...+..+...+...|++++|+..+
T Consensus 145 l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 145 LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-----------
T ss_pred Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 4433 334444444444444444444444444444332 112333333444444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.3e-13 Score=120.02 Aligned_cols=226 Identities=12% Similarity=0.066 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYN 321 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 321 (494)
+..++..+...|...|++++|+..|++..+.+ +..++..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 67788899999999999999999999998843 56788889999999 999999999999999886 788999
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 322 TIIGGFCE----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 322 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999875 67889999999999 999999999999999976 56677778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 394 IGELCD----KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE----EGKMEEALKVQAEMVGKGFEPSLEIYSAFI 465 (494)
Q Consensus 394 i~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 465 (494)
...|.. .+++++|+..|++.... .+...+..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 888888 89999999999976654 256778888999999 999999999999999864 367788888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcccc
Q 011081 466 DGYMK----EGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 466 ~~~~~----~g~~~~a~~~~~~m~~~~~~ 490 (494)
..|.+ .|++++|.+.+++..+.++.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 89998 99999999999999988764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-14 Score=127.51 Aligned_cols=235 Identities=7% Similarity=-0.025 Sum_probs=147.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.+......+...|++++|.+.|+++.+..+. +...|..+...|.+.|++++|+..+++..+.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 67 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-----------------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-----------------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 3444556666677777777777777655432 34456666667777777777777777766632
Q ss_pred CCcC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 278 CEPD--CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 278 ~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
-.++ ..+|..+...+...|++++|.+.|+...+.. +.+..+|..+...|...|++++|.+.|++..+.. +.+...|
T Consensus 68 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~ 145 (272)
T 3u4t_A 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVF 145 (272)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHH
T ss_pred CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHH
Confidence 1111 2236667777777777777777777776653 3355667777777777777777777777776653 4455566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCCC------HHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR---VFEALDILKARVVKFGLFPT------EKSY 426 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~p~------~~~~ 426 (494)
..+...+...+++++|.+.|+++.+.. +.+...+..+...+...++ .++|...+++.+....-.|+ ...|
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 666623334457777777777776653 2234555556666666666 66666666655544322233 2456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 427 MFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
..+...|.+.|++++|.+.|++..+.
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66777777788888888888887754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-14 Score=124.72 Aligned_cols=199 Identities=9% Similarity=-0.050 Sum_probs=163.8
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
++..+..+...+.+.|+ +++|+..|++..+.... +...+..+..++.+.|++++|...|++..+.+|.
T Consensus 4 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------- 71 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGR---YDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-------- 71 (217)
T ss_dssp CCHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Confidence 45677788888999999 99999999999986544 7888999999999999999999999999886654
Q ss_pred cccccccccCHHHHHHHHHHHHhc-----------CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHH
Q 011081 237 VKRVVRVRPNVHTFNALMVGFYRE-----------GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLW 305 (494)
Q Consensus 237 ~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 305 (494)
+...|..+...+.+. |++++|+..|++..+.. +-+...+..+...+...|++++|+..|
T Consensus 72 ---------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 72 ---------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 788999999999999 99999999999998874 346778899999999999999999999
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 306 EEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|...|++...
T Consensus 142 ~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 142 KQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9998886 688999999999999999999999999998875 56788899999999999999999999987643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-12 Score=137.25 Aligned_cols=350 Identities=12% Similarity=0.099 Sum_probs=250.5
Q ss_pred CCCCChhHHHHHH--HhhccCchhhhHHHHhhhcc-CCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCC-----CC
Q 011081 66 RSGLTPTQFSQIA--LGLKNNPHLALRFFSFTQHK-SLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSP-----EN 137 (494)
Q Consensus 66 ~~~~~~~~~~~~~--~~~~~~~~~a~~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~ 137 (494)
+.+..|+.+.... +...+.|..|+++++.+... ..|.-+....+.++.+..+. +.....+.....-..- ..
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~I 1058 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANI 1058 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHH
Confidence 4456777776554 34578899999999988533 22444556777777777666 3444444444422100 00
Q ss_pred CChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHH
Q 011081 138 DPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYE 217 (494)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 217 (494)
......+......|.+++......+.++. ..++ +++|.++.++. -+..+|..+..++.+.|++++|.+
T Consensus 1059 ai~lglyEEAf~IYkKa~~~~~A~~VLie---~i~n---ldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDVNTSAVQVLIE---HIGN---LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHHH---HHhh---HHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 01122334444455555544444444443 5566 88888887755 257888899999999999999999
Q ss_pred HHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC
Q 011081 218 IYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR 297 (494)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 297 (494)
.|.+. -|...|..++..+.+.|++++|.++|...++.. ++....+.++.+|++.++
T Consensus 1127 sYiKA----------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1127 SYIKA----------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHhc----------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 99775 167888889999999999999999998877654 344444469999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 298 MREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
+++...+ .+ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++
T Consensus 1183 leele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8864433 22 457778888999999999999999999985 4899999999999999999999997
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 011081 378 MCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP- 456 (494)
Q Consensus 378 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p- 456 (494)
. -+..+|..+..+|...|++..|..... ++..+...+..++..|.+.|.+++|+.+++..+. +.+
T Consensus 1247 A------~n~~aWkev~~acve~~Ef~LA~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--Lera 1312 (1630)
T 1xi4_A 1247 A------NSTRTWKEVCFACVDGKEFRLAQMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALG--LERA 1312 (1630)
T ss_pred h------CCHHHHHHHHHHHhhhhHHHHHHHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChh
Confidence 6 356889989999999999999988754 2334666788999999999999999999988874 343
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 011081 457 SLEIYSAFIDGYMKE--GNVEMATMLRK 482 (494)
Q Consensus 457 ~~~~~~~li~~~~~~--g~~~~a~~~~~ 482 (494)
....|+-|...|++. ++..++.++|.
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345666666666654 34444444444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-13 Score=121.35 Aligned_cols=195 Identities=11% Similarity=0.026 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
..+..+...+...|++++|.+.|+++....+. +..+|..+...|.+.|++++|.+.++++.+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-----------------SADAHAALAVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444555555555555555555433221 3444555555555555555555555554443
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
. +.+...+..+...|...|++++|.++++++.+.+..| +...+..+...|.+.|++++|.+.|+++.+.. +.+...+
T Consensus 101 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 178 (252)
T 2ho1_A 101 D-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVA 178 (252)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred C-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHH
Confidence 2 2233444444444555555555555555444411112 23344444444444444444444444444332 2233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
..+...|...|++++|...++.+.+.. +.+...+..+...+...|+.++|.+.++
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444444444444444444444444322 1223333333333444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-13 Score=120.24 Aligned_cols=201 Identities=13% Similarity=0.055 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...|..+...+...|++++|..+|+++.+.. +.+..++..+...|...|++++|.+.++++.+.. +.+...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 6778888888999999999999999888764 4467788888888888999999999998887764 3467788888888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
|...|++++|.++|+++.+.+..| +...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887732233 55677778888888888888888888887754 2346667777777777888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
|...++..+... +.+...+..+...+...|+.++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888777554432 245566677777777778888888777777754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-14 Score=128.82 Aligned_cols=249 Identities=8% Similarity=-0.073 Sum_probs=193.4
Q ss_pred HcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH
Q 011081 207 SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS 286 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 286 (494)
...|++++|.+.|+++.+..+. ....+..+|..+...+...|++++|...|+++.+.. +.+..+|.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~ 81 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRAL-------------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFN 81 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccc-------------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 3457889999999999765221 002267889999999999999999999999998875 44688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 287 VLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366 (494)
Q Consensus 287 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (494)
.+...|...|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.. |+.......+..+...|
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~ 158 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKL 158 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhc
Confidence 99999999999999999999998864 4468899999999999999999999999998863 44444444555667779
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 011081 367 DVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT-----EKSYMFLIKGLCEEGKMEE 441 (494)
Q Consensus 367 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 441 (494)
++++|...++...... +++... ..++..+...++.++|++.+...+.. .|+ ...+..+...|.+.|++++
T Consensus 159 ~~~~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp CHHHHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHH
Confidence 9999999998887753 334333 44777788888999999998854422 232 4678889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 442 ALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLR 481 (494)
Q Consensus 442 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 481 (494)
|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 234 A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 234 ATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99999999965 4532 233355777888999988776
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-13 Score=130.83 Aligned_cols=351 Identities=11% Similarity=-0.025 Sum_probs=221.1
Q ss_pred HHHhhccCchhhhHHHHhhhc-------cCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 011081 77 IALGLKNNPHLALRFFSFTQH-------KSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVK 149 (494)
Q Consensus 77 ~~~~~~~~~~~a~~~f~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (494)
.+....|+.+.|++.|..+.. ...-+....+|+.+..++...|++++|...++.+.+-.. ....
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~---------~~~~ 129 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE---------KFSS 129 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HSCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH---------hccc
Confidence 445667899999998887632 111133467899999999999999999999988765100 0000
Q ss_pred HhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHH---HHcCCChhHHHHHHHHHhcCC
Q 011081 150 TYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWE---VSRGKGVISGYEIYREVFGLD 226 (494)
Q Consensus 150 ~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~ 226 (494)
......+.++..+..++...|. ..+++|++.|++..+.... ++..+..+..+ +...++.++|.+.|++..+.+
T Consensus 130 --~~~~~~~~~~~~~g~~~~~~~~-~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 --PYRIESPELDCEEGWTRLKCGG-NQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp --SSCCCCHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred --ccchhhHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 0001123455555555554432 1289999999999886533 45555555544 445677888999999887765
Q ss_pred cccccccccccccccccccCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHH
Q 011081 227 SDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAE 302 (494)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 302 (494)
+. +..++..+...+.. .|++++|.+++++..... +.+..++..+...|.+.|++++|.
T Consensus 206 p~-----------------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 206 PD-----------------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp SS-----------------CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred Cc-----------------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHH
Confidence 43 56666666555544 457788999998887764 456677888899999999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHcc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 303 KLWEEMRDKNVEHDVVAYNTIIGGFCEI-------------------GEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
..+++..+.. +.+..++..+..+|... +.+++|...|++..+.. +.+..++..+...|.
T Consensus 268 ~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 268 ELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 9999888763 34566777776665432 23567777787777654 455667888888999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHhcCCHHHHHHHHHHHHHhCC----------------------
Q 011081 364 RAGDVDSAILVYNDMCRKGFEPEGS--TIEVLIG-ELCDKRRVFEALDILKARVVKFG---------------------- 418 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~---------------------- 418 (494)
..|++++|...|++.++....+... .+..+.. .....|+.++|+..|.+.+.-..
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988765433221 1222222 23467888888888876553211
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH
Q 011081 419 LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKG-FEPSLEI 460 (494)
Q Consensus 419 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~ 460 (494)
-+.+..+|..+..+|...|++++|++.|++.++.+ ..|+...
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 12345678889999999999999999999998763 3344443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-13 Score=115.56 Aligned_cols=203 Identities=8% Similarity=0.001 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 56778888888899999999999998888764 4457788888888888999999999988887764 446778888888
Q ss_pred HHHcc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 326 GFCEI-GEMARAEEFFREMGLSGVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 326 ~~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
.|... |++++|...|+++.+.+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888888732223 35677788888888888888888888887754 23466777777778888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 404 FEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
++|...+++.+.... ..+...+..+...+...|+.+.|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888876555432 135556666777777788888888888777643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=124.84 Aligned_cols=239 Identities=9% Similarity=0.012 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD--VVAYNTIIG 325 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~ 325 (494)
..+......+.+.|++++|+..|++..+.. +.+...+..+...|...|++++|...++...+.+..++ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445667788999999999999999998874 33555888899999999999999999999988432222 334899999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 405 (494)
.|...|++++|++.|++..+.. +.+...|..+...|...|++++|...|++.++.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998865 4566889999999999999999999999998763 3355666666634455669999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHH
Q 011081 406 ALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK---MEEALKVQAEMVGKG-FEPS------LEIYSAFIDGYMKEGNVE 475 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~ 475 (494)
|.+.|++.+.... .+...+..+..++...|+ .++|...+++..+.. -.|+ ...|..+...|...|+++
T Consensus 161 A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLELKP--NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHST--TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCc--cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999998776642 346677778888888888 888888888887641 1233 267888899999999999
Q ss_pred HHHHHHHHHHHccccc
Q 011081 476 MATMLRKEMFENQVRQ 491 (494)
Q Consensus 476 ~a~~~~~~m~~~~~~p 491 (494)
+|.+.+++.++.++..
T Consensus 239 ~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 239 KADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccH
Confidence 9999999999977643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-12 Score=115.21 Aligned_cols=206 Identities=11% Similarity=-0.056 Sum_probs=176.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN 360 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (494)
+...+..+...+...|++++|.+.++.+.+.. +.+...|..+...|...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45678889999999999999999999998764 4568899999999999999999999999998865 557888999999
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 361 GYCRA-GDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGK 438 (494)
Q Consensus 361 ~~~~~-g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 438 (494)
.|... |++++|...++.+.+.+..| +...+..+...+...|++++|...+++.+.... .+...+..+...+.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHcCC
Confidence 99999 99999999999998833333 356788889999999999999999997776542 357788999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 439 MEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+++|.++++++.+..-..+...+..+...+...|+.++|..+++.+.+..+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 9999999999987632156778888888899999999999999999876553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-13 Score=127.81 Aligned_cols=247 Identities=10% Similarity=0.034 Sum_probs=174.4
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHH
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA-FEKVEDVWVEMAR 275 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 275 (494)
..|+.+..++.+.|++++|++.|++++..++. +..+|+.+...+.+.|+ +++|+..|++..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-----------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-----------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-----------------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 44556666677777788888888877765544 67778888888888885 8888888888777
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
.. +-+...|+.+..++.+.|++++|+..|+++++.. +-+..+|..+..++.+.|++++|+..|+++.+.. +-+...|
T Consensus 161 l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~ 237 (382)
T 2h6f_A 161 EQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVW 237 (382)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHH
Confidence 64 3356777778888888888888888888877764 4467778888888888888888888888887765 4567778
Q ss_pred HHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 356 EHLVNGYCR-AGDVDSA-----ILVYNDMCRKGFEPEGSTIEVLIGELCDKR--RVFEALDILKARVVKFGLFPTEKSYM 427 (494)
Q Consensus 356 ~~li~~~~~-~g~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~ 427 (494)
+.+...+.. .|..++| +..|++.++.. +-+...|+.+...+...| ++++|++.+.+ + .....+...+.
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~-~--~~~p~~~~al~ 313 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLD-L--QPSHSSPYLIA 313 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH-H--TTTCCCHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHH-h--ccCCCCHHHHH
Confidence 888777777 5554666 47777777754 225567777777777777 57788887764 3 22334566777
Q ss_pred HHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCC-HHHHHHHHHHHH
Q 011081 428 FLIKGLCEEG---------KMEEALKVQAEM-VGKGFEPS-LEIYSAFIDGYM 469 (494)
Q Consensus 428 ~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~p~-~~~~~~li~~~~ 469 (494)
.+..+|.+.| .+++|.++++++ .+ +.|. ...|..+...+.
T Consensus 314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 8888887764 258888888888 54 3554 445555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-14 Score=128.52 Aligned_cols=243 Identities=9% Similarity=-0.042 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHhCCCC---cChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLS---VKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNAL 253 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 253 (494)
+++|++.++.+.+.... .+..++..+...+...|++++|.+.|+++....+. +..+|..+
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~l 83 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-----------------MPEVFNYL 83 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------CHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-----------------cHHHHHHH
Confidence 99999999999986421 24677889999999999999999999999876543 68899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
...|...|++++|...|++..+.. +.+..++..+...|.+.|++++|...|+.+.+. .|+.......+..+...|++
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCH
Confidence 999999999999999999998874 446788999999999999999999999999886 35555555566666778999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011081 334 ARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP---EGSTIEVLIGELCDKRRVFEALDIL 410 (494)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~ 410 (494)
++|...+++..... +++...+. ++..+...++.++|...++...+..... +..++..+...+...|++++|...|
T Consensus 161 ~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 161 KQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999998887764 44444444 6777788888999999999887653211 2577888999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011081 411 KARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQ 446 (494)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 446 (494)
++.+.. .|+. +.....++...|++++|++-+
T Consensus 239 ~~al~~---~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 239 KLAVAN---NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTT---CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhC---Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 976654 2432 233455677888888887766
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-12 Score=115.96 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=195.6
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR----EGAFEKVEDVW 270 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~ 270 (494)
++.++..+...+...|++++|.+.|++..+. -+..++..+...|.. .+++++|+..|
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 65 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------------------KENSGCFNLGVLYYQGQGVEKNLKKAASFY 65 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHH
Confidence 5667788888999999999999999999762 256788889999999 99999999999
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHH
Q 011081 271 VEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE----IGEMARAEEFFRE 342 (494)
Q Consensus 271 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 342 (494)
++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +..++..+...|.. .+++++|+..|++
T Consensus 66 ~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 66 AKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 9999876 77888999999999 999999999999999875 78899999999999 9999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 011081 343 MGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD----KRRVFEALDILKARV 414 (494)
Q Consensus 343 m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~ 414 (494)
..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|++.+++.+
T Consensus 140 a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 140 ACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 99876 56778888888888 899999999999999875 45677888888989 999999999999766
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011081 415 VKFGLFPTEKSYMFLIKGLCE----EGKMEEALKVQAEMVGKG 453 (494)
Q Consensus 415 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 453 (494)
.. + +...+..+...|.+ .+++++|.+.|++..+.|
T Consensus 214 ~~-~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 214 EL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 54 2 36677888888988 999999999999998764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-13 Score=121.60 Aligned_cols=194 Identities=10% Similarity=0.053 Sum_probs=80.7
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
..|..+...+...|++++|...|+++....+. +...+..+...+.+.|++++|+..+++..+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-----------------DAIPYINFANLLSSVNELERALAFYDKALEL 86 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444455555555555555555443322 3444555555555555555555555555443
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.++++.+.. +.+...+.
T Consensus 87 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 163 (243)
T 2q7f_A 87 D-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARF 163 (243)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHH
Confidence 2 2234444445555555555555555555544432 2234444444455555555555555555444432 22344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
.+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444444444444444332 1123333444444444444444444444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-13 Score=127.32 Aligned_cols=236 Identities=9% Similarity=0.041 Sum_probs=200.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR-MREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
+...|+.+...+.+.|++++|+..+++.++.. +-+..+|+.+...+.+.|+ +++|+..|++..+.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 56778889999999999999999999999875 4467889999999999997 999999999999875 45788999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCH
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD-KRRV 403 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~ 403 (494)
.+|.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++++.+. -+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999876 66889999999999999999999999999999763 367889999999988 6665
Q ss_pred HHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 011081 404 FEA-----LDILKARVVKFGLFPTEKSYMFLIKGLCEEG--KMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEG---- 472 (494)
Q Consensus 404 ~~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 472 (494)
++| ++.+++.+... +-+...|..+..++...| ++++|.+.+.++ +. -..+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 777 47788777654 235668888888888888 689999999988 33 3446788899999998874
Q ss_pred ----C-HHHHHHHHHHH-HHccc
Q 011081 473 ----N-VEMATMLRKEM-FENQV 489 (494)
Q Consensus 473 ----~-~~~a~~~~~~m-~~~~~ 489 (494)
+ .++|.++++++ .+.++
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCG
T ss_pred cchHHHHHHHHHHHHHHHHHhCc
Confidence 2 58999999999 77655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=122.49 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=161.8
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
.+.+|..+...+...|+ +++|++.|+++.+.... +...+..+...+...|++++|.+.|+++....+.
T Consensus 22 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------- 89 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGD---YEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSS-------- 89 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--------
Confidence 45667778888889999 99999999999886533 6788999999999999999999999999775432
Q ss_pred cccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 237 VKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD 316 (494)
Q Consensus 237 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 316 (494)
+..+|..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+
T Consensus 90 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 158 (243)
T 2q7f_A 90 ---------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-END 158 (243)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTC
T ss_pred ---------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Ccc
Confidence 78889999999999999999999999998875 4577889999999999999999999999998764 457
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
...+..+...|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...++++.+..
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 8899999999999999999999999998875 5668889999999999999999999999998864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-13 Score=131.98 Aligned_cols=274 Identities=14% Similarity=0.049 Sum_probs=171.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN--VHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
+..+...+...|++++|.+.|+++....+. .+. ...|..+...|...|++++|+..+++..+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE---------------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc---------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555666677777777777777654322 111 245667777777777777777777766543
Q ss_pred ----C-CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHhHHHHHHHHHHccCC--------------
Q 011081 277 ----G-CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----N-VEHDVVAYNTIIGGFCEIGE-------------- 332 (494)
Q Consensus 277 ----g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-------------- 332 (494)
+ ......++..+...|...|++++|...+++..+. + ......++..+...|...|+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 116 AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 1 1123345666777777777777777777766443 1 11234466677777777777
Q ss_pred ---HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHh
Q 011081 333 ---MARAEEFFREMGLS----GV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFE-PE----GSTIEVLIGELCD 399 (494)
Q Consensus 333 ---~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~ 399 (494)
+++|.+.+++..+. +. .....++..+...|...|++++|...+++..+.... .+ ..++..+...+..
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 77777777765432 11 112346667777777888888888887776653110 01 2256677777788
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHh
Q 011081 400 KRRVFEALDILKARVVKFGLFPT----EKSYMFLIKGLCEEGKMEEALKVQAEMVGK----GFE-PSLEIYSAFIDGYMK 470 (494)
Q Consensus 400 ~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~ 470 (494)
.|++++|.+.+++.+....-..+ ..++..+...|...|++++|.+.+++..+. +.. ....++..+...|..
T Consensus 276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 88888888887765543211111 346677777888888888888888877653 101 113466777778888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 011081 471 EGNVEMATMLRKEMFEN 487 (494)
Q Consensus 471 ~g~~~~a~~~~~~m~~~ 487 (494)
.|++++|.+++++..+.
T Consensus 356 ~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQL 372 (411)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH
Confidence 88888888888877664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-13 Score=126.67 Aligned_cols=275 Identities=12% Similarity=0.049 Sum_probs=166.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN--VHTFNALMVGFYREGAFEKVEDVWVEMARL-- 276 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 276 (494)
.....+...|++++|...|+++....+. .+. ...|..+...|...|++++|...+++..+.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 74 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE---------------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 74 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc---------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 3445555666666666666666543221 111 345666666666667777666666665432
Q ss_pred --CCC-cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCC----------------
Q 011081 277 --GCE-PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV-EHD----VVAYNTIIGGFCEIGE---------------- 332 (494)
Q Consensus 277 --g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~---------------- 332 (494)
+-. ....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3ro2_A 75 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED 154 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHH
T ss_pred cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhh
Confidence 111 1234556666666677777777776666543210 011 2356666667777777
Q ss_pred ----HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHH
Q 011081 333 ----MARAEEFFREMGLS----GV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-----EPEGSTIEVLIGELC 398 (494)
Q Consensus 333 ----~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~ 398 (494)
+++|.+.+++.... +. ......+..+...|...|++++|...+++..+... .....++..+...+.
T Consensus 155 a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 155 VRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 77777776665432 11 11234566677777777888888887777654210 111235667777778
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPT----EKSYMFLIKGLCEEGKMEEALKVQAEMVGK----GFEP-SLEIYSAFIDGYM 469 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~ 469 (494)
..|++++|...+++.+....-..+ ..++..+...|...|++++|.+.+++..+. +-.+ ...++..+...|.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 314 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 888888888887765543211112 446777788888889999999888887653 1111 1446777888888
Q ss_pred hcCCHHHHHHHHHHHHHcccc
Q 011081 470 KEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~ 490 (494)
+.|++++|.+++++..+....
T Consensus 315 ~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHTCHHHHHHHHHHHHHC---
T ss_pred HcCChHHHHHHHHHHHHHHHh
Confidence 999999999999988876443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-13 Score=130.55 Aligned_cols=277 Identities=12% Similarity=0.030 Sum_probs=211.0
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcCh----HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKV----STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
+..+...+...|+ +++|++.|++..+.+.. +. ..+..+...|...|++++|.+.|+++......
T Consensus 51 l~~~g~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------- 118 (411)
T 4a1s_A 51 LALEGERLCNAGD---CRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS-------- 118 (411)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhCc---HHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------
Confidence 3345667888899 99999999999986543 33 46888899999999999999999988653110
Q ss_pred cccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----C-CCcCHhHHHHHHHHHHhcCC--------------
Q 011081 237 VKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL----G-CEPDCYSYSVLMAVFCEERR-------------- 297 (494)
Q Consensus 237 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-------------- 297 (494)
.........++..+...|...|++++|...+++..+. + ......++..+...|...|+
T Consensus 119 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 119 ---MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred ---ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 0011335678899999999999999999999987664 1 12234578888999999999
Q ss_pred ---HHHHHHHHHHHHhC----CC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh
Q 011081 298 ---MREAEKLWEEMRDK----NV-EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV-ESS----SVTFEHLVNGYCR 364 (494)
Q Consensus 298 ---~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~ 364 (494)
+++|.+.+++..+. +. .....++..+...|...|++++|.+.|++..+... ..+ ..++..+...|..
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999886542 11 11345788899999999999999999998865410 011 2378889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh
Q 011081 365 AGDVDSAILVYNDMCRKGFE-----PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT----EKSYMFLIKGLCE 435 (494)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~ 435 (494)
.|++++|...+++..+.... ....++..+...+...|++++|...+++.+....-..+ ..++..+...|..
T Consensus 276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 99999999999988763211 12467788889999999999999999876643211122 3477888999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011081 436 EGKMEEALKVQAEMVGK 452 (494)
Q Consensus 436 ~g~~~~A~~~~~~m~~~ 452 (494)
.|++++|.+.+++..+.
T Consensus 356 ~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQL 372 (411)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH
Confidence 99999999999999864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-13 Score=128.90 Aligned_cols=278 Identities=12% Similarity=0.033 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcC----hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVK----VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIG 234 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (494)
..+......+...|+ +++|+..|++..+.+.. + ..++..+...+...|++++|...|+++......
T Consensus 10 ~~l~~~g~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------ 79 (406)
T 3sf4_A 10 LELALEGERLCKSGD---CRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART------ 79 (406)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh------
Confidence 445556666777777 77777777777765332 2 245666677777777777777777777542211
Q ss_pred cccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcC----HhHHHHHHHHHHhcCC------------
Q 011081 235 KDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC-EPD----CYSYSVLMAVFCEERR------------ 297 (494)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~------------ 297 (494)
.........++..+...|...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 80 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 154 (406)
T 3sf4_A 80 -----IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154 (406)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred -----ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence 001111245566667777777777777777777665410 011 2356666666777777
Q ss_pred --------HHHHHHHHHHHHhC----CC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 011081 298 --------MREAEKLWEEMRDK----NV-EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV-ESS----SVTFEHLV 359 (494)
Q Consensus 298 --------~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li 359 (494)
+++|...+++..+. +. .....++..+...|...|++++|...|++..+... .++ ..++..+.
T Consensus 155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77777766665431 11 11133566666666777777777777666553210 011 22556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 011081 360 NGYCRAGDVDSAILVYNDMCRK----GFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT----EKSYMFLI 430 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li 430 (494)
..|...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++.+....-..+ ..++..+.
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 314 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG 314 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 6666677777777766665542 1110 0334555566666666666666666654432211112 33455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 011081 431 KGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~ 451 (494)
..|...|++++|.+.+++..+
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-11 Score=113.84 Aligned_cols=240 Identities=11% Similarity=0.087 Sum_probs=187.6
Q ss_pred CHHHHHHHHHHHHhc----CCH----hHHHHHHHHHHHcCCCcCHhHHHHHHHHHH-------hcCCH-------HHHHH
Q 011081 246 NVHTFNALMVGFYRE----GAF----EKVEDVWVEMARLGCEPDCYSYSVLMAVFC-------EERRM-------REAEK 303 (494)
Q Consensus 246 ~~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~-------~~a~~ 303 (494)
+...|...+..-.+. ++. ++|..+|++..+.. +-+...|..++..+. +.|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 344566665544332 233 68889999988763 446778888887775 35886 89999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 304 LWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS-SV-TFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 304 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
+|++..+.-.+.+...|..++..+.+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|++.++.
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998311446678999999999999999999999999985 443 33 8999999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--C
Q 011081 382 GFEPEGSTIEVLIGELC-DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKG-FEP--S 457 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~ 457 (494)
+ +.+...|........ ..|+.++|..+|+..+...+ -+...|..++..+.+.|++++|..+|++.++.. +.| .
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 5 234445544433322 37999999999998877643 357788999999999999999999999999863 455 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 458 LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 458 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
...|..++....+.|+.++|..+++++.+..+..
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 7789999999999999999999999999877653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-13 Score=127.95 Aligned_cols=267 Identities=13% Similarity=0.086 Sum_probs=171.3
Q ss_pred HcCCCCCChHHHHHHHHHHhhhcCCC----hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhC----CCCc-ChHhHHHH
Q 011081 132 LRSPENDPKLKLFEVLVKTYRECGSA----PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSR----GLSV-KVSTCNAL 202 (494)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l 202 (494)
...|....+...+...+.. ...+ ..++..+...+...|+ +++|.+.+++..+. +..| ...++..+
T Consensus 20 ~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHD---YAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3455555566666666653 2222 2456677778888888 88888888776542 2222 24567777
Q ss_pred HHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC--------------------
Q 011081 203 IWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA-------------------- 262 (494)
Q Consensus 203 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------------------- 262 (494)
...|...|++++|...++++....+. .........++..+...|...|+
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRE-----------LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-----------HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh-----------cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 77888888888888888888664321 00001124567777788888888
Q ss_pred HhHHHHHHHHHHHc----CCCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCC
Q 011081 263 FEKVEDVWVEMARL----GCEP-DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV-EHD----VVAYNTIIGGFCEIGE 332 (494)
Q Consensus 263 ~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~ 332 (494)
+++|...+.+..+. +-.+ ...++..+...|...|++++|...+++..+... .++ ..+|..+...|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 88888887776543 1111 234567777778888888888888877754310 111 2367777788888888
Q ss_pred HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCC
Q 011081 333 MARAEEFFREMGLS----GVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEP-EGSTIEVLIGELCDKRR 402 (494)
Q Consensus 333 ~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~ 402 (494)
+++|...+++..+. +..+ ...++..+...|...|++++|...+++..+. +..+ ...++..+...|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 88888888876543 1111 1456677777888888888888888877653 1111 14456677777788888
Q ss_pred HHHHHHHHHHHHH
Q 011081 403 VFEALDILKARVV 415 (494)
Q Consensus 403 ~~~a~~~~~~~~~ 415 (494)
+++|.+.+++.+.
T Consensus 323 ~~~A~~~~~~al~ 335 (406)
T 3sf4_A 323 HDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=122.42 Aligned_cols=276 Identities=12% Similarity=0.044 Sum_probs=208.0
Q ss_pred HHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcC----hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 162 DLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVK----VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 162 ~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
......+...|+ +++|+..++++.+.... + ...+..+...+...|++++|.+.++++......
T Consensus 9 ~~~g~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------- 75 (338)
T 3ro2_A 9 ALEGERLCKSGD---CRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART--------- 75 (338)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---------
Confidence 344566788899 99999999999986433 3 367888899999999999999999988543110
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcC----HhHHHHHHHHHHhcCC---------------
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC-EPD----CYSYSVLMAVFCEERR--------------- 297 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------- 297 (494)
.........++..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 76 --~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 76 --IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp --HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred --ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence 000122467788999999999999999999998765411 112 3478888899999999
Q ss_pred -----HHHHHHHHHHHHhC----CC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHH
Q 011081 298 -----MREAEKLWEEMRDK----NV-EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GV-ESSSVTFEHLVNGY 362 (494)
Q Consensus 298 -----~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~ 362 (494)
+++|.+.+++.... +. .....++..+...|...|++++|.+.+++..+. +. .....++..+...+
T Consensus 154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 99999999876542 11 112457888899999999999999999987653 11 11233788888999
Q ss_pred HhcCCHHHHHHHHHHHHHCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 011081 363 CRAGDVDSAILVYNDMCRKG----FEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT----EKSYMFLIKGL 433 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~~----~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~ 433 (494)
...|++++|...+++..+.. ..+ ...++..+...+...|++++|...+++.+....-..+ ..++..+...|
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99999999999999887531 111 1456778888999999999999999876543211122 44677889999
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011081 434 CEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~ 452 (494)
.+.|++++|.+.+++..+.
T Consensus 314 ~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC
T ss_pred HHcCChHHHHHHHHHHHHH
Confidence 9999999999999999864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-11 Score=111.89 Aligned_cols=219 Identities=8% Similarity=0.025 Sum_probs=177.2
Q ss_pred hHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHh-------cCCH-------hHHHHHHHHHHHcCC
Q 011081 213 ISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR-------EGAF-------EKVEDVWVEMARLGC 278 (494)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~~g~ 278 (494)
++|..+|++++...|. +...|..++..+.. .|++ ++|..+|++..+.--
T Consensus 33 ~~a~~~~~~al~~~p~-----------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-----------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 95 (308)
T ss_dssp HHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCC-----------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC
Confidence 6788899998775443 78889888887763 5886 899999999987311
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-Hh-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD-VV-AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
+-+...|..++..+.+.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+.. +.+...|.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 172 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYV 172 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 335668999999999999999999999999986 444 33 89999999999999999999999999875 34455555
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 011081 357 HLVNGYC-RAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP--TEKSYMFLIKGL 433 (494)
Q Consensus 357 ~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~ 433 (494)
....... ..|+.++|..+|+..++.. +-+...|..++..+.+.|+.++|..+|++.+....+.| ....|..++..+
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4443322 3699999999999998863 33677889999999999999999999997776533454 467889999999
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011081 434 CEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~ 452 (494)
.+.|+.++|..+++++.+.
T Consensus 252 ~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999865
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.6e-12 Score=106.60 Aligned_cols=165 Identities=14% Similarity=0.079 Sum_probs=83.1
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
+.+|..+...|...|++++|.+.|++.++.+|. +..+|..+...|.+.|++++|...+.....
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 67 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-----------------NVETLLKLGKTYMDIGLPNDAIESLKKFVV 67 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344555555555555555555555555444332 444555555555555555555555555544
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
.. +-+...+..+...+...++++.|...+....+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|
T Consensus 68 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~ 144 (184)
T 3vtx_A 68 LD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAY 144 (184)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHH
Confidence 32 2233444444445555555555555555544432 2344455555555555555555555555554443 3344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
..+...|.+.|++++|.+.|++.++
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555555555555555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-12 Score=120.00 Aligned_cols=234 Identities=5% Similarity=-0.074 Sum_probs=179.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHc----CCCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C----CCCHhHHH
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARL----GCEP-DCYSYSVLMAVFCEERRMREAEKLWEEMRDKN--V----EHDVVAYN 321 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~~~~~~~~ 321 (494)
....+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999998764 1111 34678889999999999999999999876531 1 11245788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhhHH
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLS----GVE-SSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GF-EPEGSTIE 391 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~ 391 (494)
.+...|...|++++|.+.|++..+. +.. ....++..+...|...|++++|...|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988653 111 11247888999999999999999999998872 22 33466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 011081 392 VLIGELCDKRRVFEALDILKARVVKFGLFPT---EKSYMFLIKGLCEEGK---MEEALKVQAEMVGKGFEPS-LEIYSAF 464 (494)
Q Consensus 392 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l 464 (494)
.+...+...|++++|...+++.+....-..+ ...+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999976653211122 2335667788888998 77788777766 33333 4567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 465 IDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 465 i~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
...|...|++++|.+.+++..+..-
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-11 Score=120.28 Aligned_cols=344 Identities=10% Similarity=0.024 Sum_probs=149.5
Q ss_pred hhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCCh---hHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCC
Q 011081 80 GLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLI---GPARDVIRVALRSPENDPKLKLFEVLVKTYRECGS 156 (494)
Q Consensus 80 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (494)
...++++.|++.|..+...+ +..++..+-..+...|.. ++|...|+...+.
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---------------------- 67 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---------------------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC-----------------------------------------------
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----------------------
Confidence 34567777888777765432 223344444455555655 7777777766542
Q ss_pred ChhhHHHHHHHHHhcCCh--hcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhH---HHHHHHHHhcCCccccc
Q 011081 157 APFVFDLLIKCCLEVKNI--EKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVIS---GYEIYREVFGLDSDATA 231 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~ 231 (494)
++..+..+...+...+.. ...++|++.|++..+.|.. ..+..|...|...+..+. +.+.+......
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------ 138 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------ 138 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------
Confidence 223333333323333310 1267777777777776532 255566666665554332 33333333211
Q ss_pred ccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 011081 232 GIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER---RMREAEKLWEEM 308 (494)
Q Consensus 232 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m 308 (494)
.+...+..+...|...+.++++......+.+.-...+...+..|...|.+.| +.++|.++|+..
T Consensus 139 -------------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 139 -------------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp -------------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 1233444455555555544333333222222111222235555555555555 555555555555
Q ss_pred HhCCCCCCHhHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHC
Q 011081 309 RDKNVEHDVVAYNTIIGGFCEI----GEMARAEEFFREMGLSGVESSSVTFEHLVNG-Y--CRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~ 381 (494)
.+.| .++...+..|...|... +++++|++.|++.. .| +...+..|... | ...+++++|+..|++..+.
T Consensus 206 a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 206 VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 5554 33444444455555443 45556666655554 22 22333334333 2 2355556666666655555
Q ss_pred CCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 011081 382 GFEPEGSTIEVLIGELCDKR-----RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE----EGKMEEALKVQAEMVGK 452 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 452 (494)
| +...+..+...|. .| +.++|++.|++.. .-+...+..|...|.. ..+.++|.++|++..+.
T Consensus 281 g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 281 D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 4 3334444444444 33 5555555555332 2234444444444443 22555566666555554
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcc
Q 011081 453 GFEPSLEIYSAFIDGYMK----EGNVEMATMLRKEMFENQ 488 (494)
Q Consensus 453 ~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 488 (494)
|. ......|...|.. ..+.++|..+++...+.|
T Consensus 352 g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 352 GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 42 1222333333332 235555555555554444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-12 Score=125.93 Aligned_cols=212 Identities=8% Similarity=-0.001 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCCh-hHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGV-ISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMV 255 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 255 (494)
++++++.++....... .+...+..+...+...|++ ++|.+.|+++++.++. +..+|..+..
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-----------------~~~a~~~lg~ 145 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-----------------LVEAWNQLGE 145 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-----------------CHHHHHHHHH
Confidence 6777777777665432 3677888888889999999 9999999988776543 6788888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEE---------RRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
.|.+.|++++|+..|++..+. .|+...+..+...|... |++++|.+.|++..+.. +.+...|..+..+
T Consensus 146 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 222 (474)
T 4abn_A 146 VYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999999888876 46777888888888888 88888888888887764 4467788888888
Q ss_pred HHcc--------CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 011081 327 FCEI--------GEMARAEEFFREMGLSGVE---SSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIG 395 (494)
Q Consensus 327 ~~~~--------g~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 395 (494)
|... |++++|++.|++..+.. + -+...|..+...|...|++++|.+.|++..+.. +-+...+..+..
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~ 300 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8888 88888888888887753 3 477788888888888888888888888887764 224556677777
Q ss_pred HHHhcCCHHHHHHHHH
Q 011081 396 ELCDKRRVFEALDILK 411 (494)
Q Consensus 396 ~~~~~~~~~~a~~~~~ 411 (494)
.+...|++++|++.+.
T Consensus 301 ~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 301 LLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777777777766543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-11 Score=103.72 Aligned_cols=169 Identities=12% Similarity=0.043 Sum_probs=149.5
Q ss_pred CCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccc
Q 011081 155 GSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIG 234 (494)
Q Consensus 155 ~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (494)
|.++.+|..+...|.+.|+ +++|++.|++..+.... +..++..+..+|.+.|++++|...+.......+.
T Consensus 2 ge~~~iy~~lG~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------ 71 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGD---FDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------ 71 (184)
T ss_dssp --CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------
T ss_pred CcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------
Confidence 4567889999999999999 99999999999987644 7888999999999999999999999999775543
Q ss_pred cccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 235 KDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE 314 (494)
Q Consensus 235 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 314 (494)
+...+..+...+...++++.+...+.+..+.. +-+...+..+...|.+.|++++|++.|++..+.. +
T Consensus 72 -----------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p 138 (184)
T 3vtx_A 72 -----------SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-P 138 (184)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred -----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-c
Confidence 67888888999999999999999999988764 4467889999999999999999999999998874 4
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 315 HDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.+..+|..+..+|.+.|++++|++.|++..+.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.4e-12 Score=122.75 Aligned_cols=214 Identities=9% Similarity=-0.020 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHcCCCcCHhHHHHHHH
Q 011081 212 VISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAF-EKVEDVWVEMARLGCEPDCYSYSVLMA 290 (494)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~ 290 (494)
++++.+.+++.....+ .+...|..+...|...|++ ++|++.|++..+.. +-+..+|..+..
T Consensus 84 ~~~al~~l~~~~~~~~-----------------~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 145 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-----------------VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGE 145 (474)
T ss_dssp HHHHHHHHHHHHTTCC-----------------CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-----------------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5566667776655432 3788899999999999999 99999999998874 345788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 291 VFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI---------GEMARAEEFFREMGLSGVESSSVTFEHLVNG 361 (494)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 361 (494)
.|.+.|++++|.+.|++..+. .|+...+..+...|... |++++|++.|++..+.. +.+...|..+..+
T Consensus 146 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 222 (474)
T 4abn_A 146 VYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999999999887 46778899999999999 99999999999998875 5568889999999
Q ss_pred HHhc--------CCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 362 YCRA--------GDVDSAILVYNDMCRKGFE--PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIK 431 (494)
Q Consensus 362 ~~~~--------g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 431 (494)
|... |++++|+..|++.++.... -+...|..+...|...|++++|++.|++.+.... -+...+..+..
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~a~~~l~~ 300 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP--AWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 9888 8899999999999886421 3677888888999999999999999987776542 34567778888
Q ss_pred HHHhcCCHHHHHHHHHH
Q 011081 432 GLCEEGKMEEALKVQAE 448 (494)
Q Consensus 432 ~~~~~g~~~~A~~~~~~ 448 (494)
++...|++++|.+.+.+
T Consensus 301 ~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 301 LLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 88888888888875543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-12 Score=116.14 Aligned_cols=245 Identities=11% Similarity=0.065 Sum_probs=176.3
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARL-------GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----- 311 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 311 (494)
+.+..+|..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 346788999999999999999999999999873 22334567888999999999999999999998754
Q ss_pred -C-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 011081 312 -N-VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS------GV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK- 381 (494)
Q Consensus 312 -g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 381 (494)
+ .+....++..+...|...|++++|.+.|++..+. +. +.....+..+...|...|++++|..+|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 1234668899999999999999999999998764 21 234566888899999999999999999998774
Q ss_pred -----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCCC-------HHHHHHHHHHHHhcCCHHHH
Q 011081 382 -----GFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKF------GLFPT-------EKSYMFLIKGLCEEGKMEEA 442 (494)
Q Consensus 382 -----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-------~~~~~~li~~~~~~g~~~~A 442 (494)
+..| ...++..+...+...|++++|.+.+++.+... ...+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2223 34577888899999999999999999766431 11111 11222223333445555666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 443 LKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
...+...... ...+..++..+..+|.+.|++++|.+++++.++..+
T Consensus 264 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 264 GGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 6666666543 123467888899999999999999999999987643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-11 Score=113.47 Aligned_cols=235 Identities=11% Similarity=-0.027 Sum_probs=177.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--C-
Q 011081 202 LIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG--C- 278 (494)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~- 278 (494)
....+...|++++|.+.|+++...... .....-...+|..+...|...|++++|+..+.+..+.- .
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIF-----------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGG-----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhh-----------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 556778899999999999999764221 00001146789999999999999999999999887641 1
Q ss_pred ---CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----
Q 011081 279 ---EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVE-HDVVAYNTIIGGFCEIGEMARAEEFFREMGLS---- 346 (494)
Q Consensus 279 ---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 346 (494)
.....+++.+...|...|++++|...|++..+. +-. ....++..+..+|...|++++|.+.|++..+.
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 112357888999999999999999999987653 111 11247889999999999999999999998772
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHhCC
Q 011081 347 GV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEPEGSTIEVLIGELCDKRR---VFEALDILKARVVKFG 418 (494)
Q Consensus 347 ~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~ 418 (494)
+. +....++..+...|.+.|++++|...+++..+. +-......+..+...+...|+ +++|+.++++. +
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~ 333 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----M 333 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----T
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----c
Confidence 22 445677889999999999999999999988763 111122335667777888888 77777777632 3
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 419 LFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 419 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2333 34677888999999999999999998875
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-11 Score=118.90 Aligned_cols=314 Identities=9% Similarity=-0.018 Sum_probs=208.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhC
Q 011081 111 IIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSR 190 (494)
Q Consensus 111 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~ 190 (494)
+...+.+.|++++|..+++.+.+.+ ++.++..|...|...|+.+..++|++.|++..+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---------------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~ 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---------------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------------------CCTGGGTCC-------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC
Confidence 4566677899999999999887643 1223333444455566622248999999988754
Q ss_pred CCCcChHhHHHHHHHHHcCC-----ChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHh-
Q 011081 191 GLSVKVSTCNALIWEVSRGK-----GVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFE- 264 (494)
Q Consensus 191 g~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~- 264 (494)
++..+..|...+...+ +.++|.+.|++..+.+. ...+..|...|...+..+
T Consensus 68 ----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-------------------~~A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 68 ----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-------------------GNTLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp -------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-------------------SSCHHHHHHHHHHCGGGCT
T ss_pred ----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHhCCCCCC
Confidence 5666777777565555 67899999999976442 236777777777766544
Q ss_pred --HHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHhHHHHHHHHHHccC---CHHH
Q 011081 265 --KVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREA----EKLWEEMRDKNVEHDVVAYNTIIGGFCEIG---EMAR 335 (494)
Q Consensus 265 --~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~ 335 (494)
++.+.+....+.| +...+..|...|...+.++++ ..+++.... .+...+..|...|.+.| +.++
T Consensus 125 ~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~ 197 (452)
T 3e4b_A 125 NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAE 197 (452)
T ss_dssp TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHH
Confidence 4555666555555 456777788888888855444 444444433 24448899999999999 9999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-H--HhcCCHHHHHH
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRA----GDVDSAILVYNDMCRKGFEPEGSTIEVLIGE-L--CDKRRVFEALD 408 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~~~~~~a~~ 408 (494)
|++.|++..+.| .++...+..+...|... +++++|+..|+... .| +...+..+... + ...++.++|++
T Consensus 198 A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 198 LLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 999999999988 66777667777777655 79999999999987 44 44555566555 3 46899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 011081 409 ILKARVVKFGLFPTEKSYMFLIKGLCEEG-----KMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMK----EGNVEMATM 479 (494)
Q Consensus 409 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~ 479 (494)
.|++.... | +...+..|...|. .| ++++|.++|++.. .-+...+..|...|.. ..+.++|.+
T Consensus 273 ~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 273 YLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 99976643 3 6777777887777 56 9999999999886 3367777777777766 349999999
Q ss_pred HHHHHHHccc
Q 011081 480 LRKEMFENQV 489 (494)
Q Consensus 480 ~~~~m~~~~~ 489 (494)
+|++..+.|.
T Consensus 344 ~~~~Aa~~g~ 353 (452)
T 3e4b_A 344 HLLTAARNGQ 353 (452)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHhhCh
Confidence 9999887654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-11 Score=111.93 Aligned_cols=204 Identities=14% Similarity=0.124 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc------CC-CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARL------GC-EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK------N 312 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 312 (494)
...++..+...|...|++++|..++++..+. +- .....++..+...|...|++++|.+.+++..+. +
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 5677889999999999999999999998764 21 224567888999999999999999999998764 2
Q ss_pred C-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 011081 313 V-EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS------G-VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK--- 381 (494)
Q Consensus 313 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 381 (494)
- +....++..+...|...|++++|.++|+++.+. + .+....++..+...|...|++++|...++++.+.
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 224567888999999999999999999998764 2 1223467888999999999999999999999863
Q ss_pred ----CCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 382 ----GFEPEGSTIEVL-------IGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 382 ----~~~p~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
...+........ ...+...+.+.++...+...... ...+..++..+..+|.+.|++++|.++|++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 122222222222 23333444555555555533322 12345678889999999999999999999887
Q ss_pred h
Q 011081 451 G 451 (494)
Q Consensus 451 ~ 451 (494)
+
T Consensus 306 ~ 306 (311)
T 3nf1_A 306 R 306 (311)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-11 Score=99.43 Aligned_cols=164 Identities=10% Similarity=0.081 Sum_probs=99.7
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
..+..+...+...|++++|.+.|+++....+. +..++..+...+...|++++|...++++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-----------------DVDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33445555666666666666666666544322 4556666666666666666666666666654
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+.. +.+...+.
T Consensus 72 ~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 148 (186)
T 3as5_A 72 A-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHR 148 (186)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHH
Confidence 3 3345556666666666666666666666665543 3355566666666666666666666666665543 34455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 357 HLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.+...+...|++++|...++.+.+
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-10 Score=105.06 Aligned_cols=273 Identities=9% Similarity=0.030 Sum_probs=194.1
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChH----hHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccc
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVS----TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKR 239 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
....+...|+ +++|...+++........+.. +++.+...+...|++++|.+.+++.....+.
T Consensus 20 ~a~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------- 85 (373)
T 1hz4_A 20 RAQVAINDGN---PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ----------- 85 (373)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-----------
Confidence 3445667888 999999999988754332322 4666777888899999999999998653221
Q ss_pred ccc-cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCC--c-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 240 VVR-VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL----GCE--P-DCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 240 ~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
.+ ......+++.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....
T Consensus 86 -~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 86 -HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 00 0112345677888899999999999999988654 211 2 2345677888899999999999999988754
Q ss_pred CCC----CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 312 NVE----HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS-SVTFE-----HLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 312 g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
... ....+|..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++....
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 211 1235678888999999999999999998865311111 11222 2334477999999999999988764
Q ss_pred CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 382 GFEPE---GSTIEVLIGELCDKRRVFEALDILKARVVK---FGLFPTE-KSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 382 ~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
...+. ...+..+...+...|++++|...++..+.. .+..++. ..+..+..++...|+.++|...+.+...
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 32211 224567778899999999999999865442 2222222 2566677888899999999999998865
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.9e-10 Score=106.31 Aligned_cols=234 Identities=9% Similarity=0.063 Sum_probs=177.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCC-Cc----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CC-CCHh
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGC-EP----DCYSYSVLMAVFCEERRMREAEKLWEEMRDK----N-VE-HDVV 318 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~-~~~~ 318 (494)
|......+...|++++|+..|++..+... .+ ...++..+...|...|+++.|...+++..+. + .. ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 33445567789999999999999876421 12 2457888999999999999999999987642 1 11 1255
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChh
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLS----GVE-SSSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KGFEPEGS 388 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 388 (494)
+++.+..+|...|++++|.+.|++..+. +.. ....++..+...|...|++++|...|++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 7888999999999999999999987653 211 1235678899999999999999999999887 43 23367
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHH
Q 011081 389 TIEVLIGELCDKRRVFEALDILKARVVKFGLFP---TEKSYMFLIKGLCEEGK---MEEALKVQAEMVGKGFEPS-LEIY 461 (494)
Q Consensus 389 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~ 461 (494)
++..+...+.+.|++++|...+++.+....-.. ....+..+...+...|+ +++|..++++. +..|+ ...+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 788889999999999999999998776543222 23355666666777888 77888777763 33333 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 462 SAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 462 ~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
..+...|...|++++|.+.+++..+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77888999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-10 Score=97.07 Aligned_cols=166 Identities=16% Similarity=0.032 Sum_probs=93.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELC 398 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 398 (494)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555554432 2344455555555555555555555555555442 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011081 399 DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMAT 478 (494)
Q Consensus 399 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 478 (494)
..|++++|.+.+++.+... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 5666666666655444432 2344556666666666777777777777666542 334566666777777777777777
Q ss_pred HHHHHHHHccc
Q 011081 479 MLRKEMFENQV 489 (494)
Q Consensus 479 ~~~~~m~~~~~ 489 (494)
+.+++..+..+
T Consensus 165 ~~~~~~~~~~~ 175 (186)
T 3as5_A 165 PHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCC
Confidence 77777666544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.6e-11 Score=121.26 Aligned_cols=165 Identities=12% Similarity=0.057 Sum_probs=117.5
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
..+|+.|..+|.+.|++++|.+.|+++++.++. +..+|+.+...|.+.|++++|++.|++..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-----------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----------------FAAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777777777777777777777665443 567777777777777777777777777766
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+.. +-+...|
T Consensus 72 l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~ 148 (723)
T 4gyw_A 72 IS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAY 148 (723)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 53 2345677777777777777777777777776653 3356677777777777777777777777777654 4456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
..+...|...|++++|.+.++++++
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777777777766654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-10 Score=106.19 Aligned_cols=275 Identities=10% Similarity=-0.062 Sum_probs=194.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-C
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC-E 279 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~ 279 (494)
.....+...|++++|...+++.....+. .....-..+++.+...+...|++++|...+++..+..- .
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPP------------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCC------------CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence 3445567789999999999998765432 00000123577778889999999999999998765311 1
Q ss_pred cC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011081 280 PD----CYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVE--H-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGV 348 (494)
Q Consensus 280 p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 348 (494)
.+ ..++..+...+...|++++|...+++..+. +.. | ....+..+...|...|++++|...+++......
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 12 233567788899999999999999987653 222 2 245677788899999999999999999875421
Q ss_pred C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 011081 349 E----SSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG-STIE-----VLIGELCDKRRVFEALDILKARVVKFG 418 (494)
Q Consensus 349 ~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~ 418 (494)
. ....++..+...+...|++++|...+++.....-.++. ..+. ..+..+...|+.++|...+++......
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 1 12456778888999999999999999998753212111 1121 233447789999999999885443211
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 419 LF--PTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK----GFEPSL-EIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 419 ~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.. .....+..+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++..+.
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 10 11335677888899999999999999988653 222222 36666777889999999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-09 Score=103.53 Aligned_cols=235 Identities=11% Similarity=-0.000 Sum_probs=175.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC---
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG--- 277 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--- 277 (494)
.....+...|++++|...|+++...... ..+......++..+...|...|++++|...+.+..+..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPF-----------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGG-----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhh-----------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 3445667899999999999999765321 00012246778899999999999999999999887531
Q ss_pred --CCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHh----
Q 011081 278 --CEP-DCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVE-HDVVAYNTIIGGFCEIGEMARAEEFFREMGL---- 345 (494)
Q Consensus 278 --~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 345 (494)
..+ ...+++.+...|...|++++|.+.|++..+. +-. ....+++.+..+|...|++++|.+.|++..+
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 111 2457888999999999999999999987653 211 1245788899999999999999999999877
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHhC
Q 011081 346 -SGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF----EPEGSTIEVLIGELCDKRR---VFEALDILKARVVKF 417 (494)
Q Consensus 346 -~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~ 417 (494)
.. +....++..+...|.+.|++++|...+++..+... +.....+..+...+...++ +.+|+..+++ .
T Consensus 255 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~----~ 329 (378)
T 3q15_A 255 KVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK----K 329 (378)
T ss_dssp HCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH----T
T ss_pred hCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----C
Confidence 43 33467888999999999999999999999887421 1223345555566667777 7778777763 2
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 418 GLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 418 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
+..++ ...+..+...|...|++++|.+.|++..+
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22232 34567788999999999999999998864
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-10 Score=118.52 Aligned_cols=167 Identities=10% Similarity=0.053 Sum_probs=149.1
Q ss_pred CChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccc
Q 011081 156 SAPFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGK 235 (494)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (494)
.++.+++.|...+.+.|+ +++|++.|++.++.... +..+|+.+..+|.+.|++++|.+.|+++++.++.
T Consensus 7 ~~a~al~nLG~~~~~~G~---~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------- 75 (723)
T 4gyw_A 7 THADSLNNLANIKREQGN---IEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------- 75 (723)
T ss_dssp HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Confidence 346788999999999999 99999999999986543 6788999999999999999999999999887654
Q ss_pred ccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011081 236 DVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH 315 (494)
Q Consensus 236 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 315 (494)
+..+|+.+...|.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+.. +-
T Consensus 76 ----------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~ 143 (723)
T 4gyw_A 76 ----------FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PD 143 (723)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SC
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 78999999999999999999999999998874 4467899999999999999999999999998874 44
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
+...|..+..+|...|++++|.+.+++..+
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 688999999999999999999999888754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=105.47 Aligned_cols=227 Identities=10% Similarity=0.067 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccc--ccccCHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVV--RVRPNVHTFNALM 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~li 254 (494)
+++|++++.............++..+...|...|++++|.+.|+++..... +.. .......+|..+.
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE-----------KTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-----------HHcCCcchHHHHHHHHHH
Confidence 556666666665433334567788999999999999999999999865310 000 0123577899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHc------C-CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHhHH
Q 011081 255 VGFYREGAFEKVEDVWVEMARL------G-CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK------N-VEHDVVAY 320 (494)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~------g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~~~ 320 (494)
..|...|++++|...+++..+. . -+....++..+...|...|++++|..++++..+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998765 1 1234567888999999999999999999998764 1 12245678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHCCCCCC
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLS-------GVES-SSVTFEHLVNGYCRAGDVDS------AILVYNDMCRKGFEPE 386 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~~~~p~ 386 (494)
..+...|.+.|++++|..+|++..+. ...+ ....|..+...+...+.... +...++.... .....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 89999999999999999999998753 1122 22333334333333333222 2222222211 11223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 387 GSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 387 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
..++..+...|...|++++|...+++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55778889999999999999999986654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-10 Score=105.12 Aligned_cols=229 Identities=11% Similarity=0.026 Sum_probs=158.5
Q ss_pred HhcCCHhHHHHHHHHHHHc-------CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHhHHHHH
Q 011081 258 YREGAFEKVEDVWVEMARL-------GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK------NV-EHDVVAYNTI 323 (494)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~l 323 (494)
...|++++|+.++++..+. ..+....++..+...|...|++++|...+++..+. +- +....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777887777776652 21234567889999999999999999999998754 21 2346688999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-Chhh
Q 011081 324 IGGFCEIGEMARAEEFFREMGLS------G-VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK------GFEP-EGST 389 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 389 (494)
...|...|++++|.+.|++.... . .+....++..+...|...|++++|...++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1334677888999999999999999999998875 1123 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCC
Q 011081 390 IEVLIGELCDKRRVFEALDILKARVVKF------GLFPT-EKSYMFLIKGLCEEGK------MEEALKVQAEMVGKGFEP 456 (494)
Q Consensus 390 ~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p 456 (494)
+..+...+...|++++|.+.+++.+... ...+. ...|..+...+...+. +..+...+..... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 8888999999999999999999766531 11111 2233333333333222 3333333332211 1112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 457 SLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 457 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
...++..+...|...|++++|.+++++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888899999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-09 Score=95.92 Aligned_cols=198 Identities=10% Similarity=-0.065 Sum_probs=152.1
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011081 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLV 359 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 359 (494)
.|...+......+.+.|++++|...|+...+....++...+..+..+|.+.|++++|++.|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888899999999999999999999887533677888889999999999999999999998875 45677889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 011081 360 NGYCRAGDVDSAILVYNDMCRKGFEPEG-------STIEVLIGELCDKRRVFEALDILKARVVKFGLFPT---EKSYMFL 429 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 429 (494)
..|...|++++|...|++.++... .+. ..|..+...+...|++++|++.|++.+.. .|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 999999999999999999988642 233 45777778888999999999999865543 454 4566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 430 IKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
..+|...| ..+++++...+ ..+...|..... ...|.+++|...+++..+..+.
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCC
Confidence 77765544 44455555443 334555544443 3456789999999999987654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-09 Score=95.23 Aligned_cols=196 Identities=9% Similarity=-0.002 Sum_probs=152.5
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKD 236 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (494)
++..+......+...|+ +++|++.|+...+....++...+..+..++...|++++|.+.|++....++.
T Consensus 6 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------- 74 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKN---YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-------- 74 (228)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS--------
T ss_pred CHHHHHHHHHHHHHccC---HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc--------
Confidence 45677777888899999 9999999999998775467777777999999999999999999999876553
Q ss_pred cccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 237 VKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC-------YSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 237 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
+...|..+...|.+.|++++|+..+++..+.. +.+. ..|..+...+.+.|++++|.+.|++..
T Consensus 75 ---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 75 ---------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ---------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 67889999999999999999999999998763 2234 457788888999999999999999998
Q ss_pred hCCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 310 DKNVEH--DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 310 ~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
+.. +. +...|..+..+|...| ..+++++...+ ..+...|.... ....+.+++|+..|++..+..
T Consensus 145 ~~~-p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 145 DVT-SKKWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp TSS-CHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hcC-CCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 873 22 3567778888876544 34455555543 33444454443 334566899999999998864
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-07 Score=95.62 Aligned_cols=240 Identities=9% Similarity=-0.053 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHhcC-------CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHh
Q 011081 247 VHTFNALMVGFYREG-------AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAE-KLWEEMRDKNVEHDVV 318 (494)
Q Consensus 247 ~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~~~~~ 318 (494)
...|...+.---..+ ..+.+..+|++.+..- +-+...|...+..+.+.|+.++|. ++|+..... ++.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 355666665433322 1234567888887763 447788888888888999999996 999999875 355677
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC---------CCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLSG---------VES------------SSVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
.|-.++....+.|++++|.++|+++.... -.| ....|...+....+.|..+.|..+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78889999999999999999999987631 013 234688888888889999999999999
Q ss_pred HHHC-CCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 378 MCRK-GFEPEGSTIEVLIGELCDK-RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFE 455 (494)
Q Consensus 378 m~~~-~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (494)
.++. + ......|...+..-.+. ++.+.|.++|+..++..+ -+...|...+......|+.+.|..+|++.+.....
T Consensus 460 A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 460 CRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9886 2 12233443333333333 458999999998888753 35566778888888899999999999999876322
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 456 P--SLEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 456 p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
+ ....|...+..-.+.|+.+.+.++.+++.+..++.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2 35788999998899999999999999999987654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.19 E-value=8.5e-08 Score=97.18 Aligned_cols=362 Identities=7% Similarity=-0.015 Sum_probs=220.3
Q ss_pred hhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHH
Q 011081 87 LALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIK 166 (494)
Q Consensus 87 ~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~ 166 (494)
....-|....... +.|..+|..++..+.+.+.++.++.+|+.++..- .....+|..-+.
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~----------------- 108 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLS----------------- 108 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHH-----------------
Confidence 3343444444344 4689999999999999999999999999998732 222333333332
Q ss_pred HHHhcCChhcHHHHHHHHHHHHhCC-CCcChHhHHHHHHHHHcCCCh--------hHHHHHHHHHhcCCccccccccccc
Q 011081 167 CCLEVKNIEKIETCVDIVRMLMSRG-LSVKVSTCNALIWEVSRGKGV--------ISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 167 ~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
.-.+.++....+.+.++|++.+... ..|++..|...+.-..+.++. +...++|+.++..
T Consensus 109 ~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~------------ 176 (679)
T 4e6h_A 109 LEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK------------ 176 (679)
T ss_dssp HHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH------------
Confidence 2222221112888999999998754 237888888887765554443 3344677766431
Q ss_pred cccccc-cc-CHHHHHHHHHHHH---------hcCCHhHHHHHHHHHHHcCCCcCHhHH---------------------
Q 011081 238 KRVVRV-RP-NVHTFNALMVGFY---------REGAFEKVEDVWVEMARLGCEPDCYSY--------------------- 285 (494)
Q Consensus 238 ~~~~~~-~p-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~g~~p~~~~~--------------------- 285 (494)
.|. .+ +...|...+.... ..++.+.+..+|.+.+......-..+|
T Consensus 177 ---vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e 253 (679)
T 4e6h_A 177 ---CAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE 253 (679)
T ss_dssp ---TTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred ---hCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 122 22 3455665554332 223345566666665532111111122
Q ss_pred ----------------------------------------------------HHHHHHHHhcC-------CHHHHHHHHH
Q 011081 286 ----------------------------------------------------SVLMAVFCEER-------RMREAEKLWE 306 (494)
Q Consensus 286 ----------------------------------------------------~~li~~~~~~g-------~~~~a~~~~~ 306 (494)
...+..--..+ ..+.+..+|+
T Consensus 254 ~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 254 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 11111110000 0112233444
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 011081 307 EMRDKNVEHDVVAYNTIIGGFCEIGEMARAE-EFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF-- 383 (494)
Q Consensus 307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-- 383 (494)
+.+.. ++-+...|-..+.-+.+.|+.++|. ++|++.... ++.+...|...+....+.|++++|.++|+.+++...
T Consensus 334 ~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 334 QAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44333 1234555666666666778888886 888888764 355666777888888889999999999998876310
Q ss_pred -------CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhc-CCHHHH
Q 011081 384 -------EPE------------GSTIEVLIGELCDKRRVFEALDILKARVVK-FGLFPTEKSYMFLIKGLCEE-GKMEEA 442 (494)
Q Consensus 384 -------~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~-g~~~~A 442 (494)
.|+ ..+|...+....+.|..+.|..+|...+.. ... ....|...+..-.+. ++.+.|
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~--~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV--TPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS--CTHHHHHHHHHHHTTTSCCHHH
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCCHHHH
Confidence 131 235777777777888899999999877654 222 223343333333343 458999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 443 LKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.++|+..++. ++-+...|...++.....|+.+.|+.+|++.+...+
T Consensus 490 r~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 490 CKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 9999999876 455677778888888888999999999999887655
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-09 Score=84.13 Aligned_cols=130 Identities=16% Similarity=0.306 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (494)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677777888888888888888877654 3356677777777888888888888888777654 345667777777788
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888777654 445667777777777778888887777777654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-09 Score=98.88 Aligned_cols=163 Identities=11% Similarity=-0.032 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHh
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARL----GCEPD-CYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVEH-DVV 318 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~ 318 (494)
.|+.....|...|++++|...|.+..+. |-.++ ..+|+.+...|.+.|++++|+..|++..+. |-.. -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555555555555555544332 11111 234555555555555555555555554332 1000 023
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHhCCC---CC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----
Q 011081 319 AYNTIIGGFCEI-GEMARAEEFFREMGLSGV---ES-S-SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGS---- 388 (494)
Q Consensus 319 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~---~~-~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---- 388 (494)
+|+.+...|... |++++|+..|++..+... .+ . ..++..+...|.+.|++++|+..|++..+........
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 444555555553 555555555555443210 00 0 2234444555555555555555555554432211110
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHH
Q 011081 389 --TIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 389 --~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
.+..+..++...|++++|...|+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 23334444444555555555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.9e-09 Score=96.00 Aligned_cols=210 Identities=12% Similarity=0.007 Sum_probs=153.8
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HhHHHHHHHHHHccCCHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVEHD-VVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A 336 (494)
++++|...|++. ...|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488898888876 34577889999999999887543 32222 56899999999999999999
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----hhhHHHHHHHHHhcCCHHH
Q 011081 337 EEFFREMGLS----GVES-SSVTFEHLVNGYCRA-GDVDSAILVYNDMCRKGFEP-E----GSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 337 ~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~~~~~~ 405 (494)
+..|++..+. |-.. -..+++.+...|... |++++|+..|++.++..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999987653 2111 145788899999996 99999999999887642110 1 3568888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcC
Q 011081 406 ALDILKARVVKFGLFPTE-----KSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL------EIYSAFIDGYM--KEG 472 (494)
Q Consensus 406 a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g 472 (494)
|+..|++.+....-.+.. ..|..+..++...|++++|...|++..+ +.|+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999777644322221 2567788889999999999999999885 34442 23455666664 457
Q ss_pred CHHHHHHHHHHHHHcc
Q 011081 473 NVEMATMLRKEMFENQ 488 (494)
Q Consensus 473 ~~~~a~~~~~~m~~~~ 488 (494)
++++|++.|+++...+
T Consensus 255 ~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLD 270 (292)
T ss_dssp THHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhccCCccH
Confidence 7899998887765543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6e-09 Score=82.51 Aligned_cols=130 Identities=12% Similarity=0.229 Sum_probs=112.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.|..+...+...|++++|.++|+++....+ .+...|..+...+...|++++|..+++++.+.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-----------------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 466778888889999999999999876443 267888999999999999999999999998875
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
+.+...+..+...+...|++++|.++++++.+.. +.+..++..+...|.+.|++++|...|+++...
T Consensus 66 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 -PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4467788889999999999999999999998764 446788999999999999999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=8.3e-08 Score=86.56 Aligned_cols=201 Identities=11% Similarity=0.050 Sum_probs=142.1
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV-EHDVVAYNT 322 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ 322 (494)
.|....+..+...+ ..+ |+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..
T Consensus 68 ~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l 141 (310)
T 3mv2_B 68 SKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLL 141 (310)
T ss_dssp STTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHH
T ss_pred CHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHH
Confidence 34544444444333 322 778888887765 55666677888899999999999999999877653 236778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVES-----SSVTFEHLVNGY--CRAG--DVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
++..|.+.|+.+.|.+.+++|.+. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+...+
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lL 217 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGL 217 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHH
Confidence 999999999999999999999775 56 355666666663 3334 899999999998765 3553344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 394 IGELCDKRRVFEALDILKARVVKF----G----LFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 394 i~~~~~~~~~~~a~~~~~~~~~~~----~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
+.++.+.|++++|.+.++...... . -+-+..+...+|......|+ +|.+++.++.+. .|+.
T Consensus 218 ln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 218 LNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 558889999999999998433321 0 12355666566666666777 889999999865 5553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-08 Score=90.27 Aligned_cols=189 Identities=8% Similarity=0.035 Sum_probs=115.7
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHh
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD---CYSYSVLMAVFCEERRMREAEKLWEEMRDKNV--EHDVV 318 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~ 318 (494)
..+...+-.+...+.+.|++++|+..|+++.+.. +-+ ...+..+..+|.+.|++++|...|+...+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677777778888888888888888887753 222 45677777788888888888888888876521 11244
Q ss_pred HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 011081 319 AYNTIIGGFCE--------IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTI 390 (494)
Q Consensus 319 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 390 (494)
++..+..+|.+ .|++++|+..|+++.+.. +.+......+.. +..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 56667777777 788888888888777653 212222211110 0000000 00113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 011081 391 EVLIGELCDKRRVFEALDILKARVVKFGLFP-TEKSYMFLIKGLCEE----------GKMEEALKVQAEMVGK 452 (494)
Q Consensus 391 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 452 (494)
..+...|...|++++|+..|++.+....-.+ ....+..+..+|... |++++|...|+++++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4455666777777777777776665543222 234555666666655 7777888888777754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-08 Score=88.13 Aligned_cols=188 Identities=9% Similarity=-0.015 Sum_probs=134.8
Q ss_pred cCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHH
Q 011081 280 PDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD---VVAYNTIIGGFCEIGEMARAEEFFREMGLSGV--ESSSVT 354 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~ 354 (494)
.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355667777888888999999999999988763 223 56788888889999999999999998887521 123456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH
Q 011081 355 FEHLVNGYCR--------AGDVDSAILVYNDMCRKGFEPEG-STIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKS 425 (494)
Q Consensus 355 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 425 (494)
+..+..++.. .|++++|...|+++++.. |+. .....+... ..... .. ...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~-------~~~~~----~~--------~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKI-------RELRA----KL--------ARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHH-------HHHHH----HH--------HHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHH-------HHHHH----HH--------HHH
Confidence 7777778888 888999999999888753 332 222111110 00000 01 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHccccc
Q 011081 426 YMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS----LEIYSAFIDGYMKE----------GNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p 491 (494)
+..+...|.+.|++++|...|+++++. .|+ ...+..+..+|... |++++|...++++++..+..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 456778899999999999999999875 343 45777788888866 89999999999999876543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-08 Score=86.59 Aligned_cols=164 Identities=8% Similarity=0.061 Sum_probs=97.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHH----------------HHHHHHhcCCHhH
Q 011081 202 LIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNA----------------LMVGFYREGAFEK 265 (494)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------li~~~~~~g~~~~ 265 (494)
....+...|++++|...|++....+|. +...|.. +...|.+.|++++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 72 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNID-----------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDK 72 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHH-----------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHH
Confidence 344455666777777777666554432 2333333 6777777777777
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC--HHHHHHHHHHH
Q 011081 266 VEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE--MARAEEFFREM 343 (494)
Q Consensus 266 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m 343 (494)
|+..|++..+.. +-+...+..+...+...|++++|...|++..+.. +.+..+|..+...|...|+ .+.+...++..
T Consensus 73 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 73 AYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777777777664 3356677777777777777777777777777653 3456677777777655543 33444455444
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 011081 344 GLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGS 388 (494)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 388 (494)
.. ..|....+..+..++...|++++|...|++.++. .|+..
T Consensus 151 ~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 151 SS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp -C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred hC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 31 1222223334445555667777777777777654 35543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-07 Score=83.77 Aligned_cols=220 Identities=10% Similarity=0.055 Sum_probs=158.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC 328 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (494)
.---+.++|...|++.... .-.|....+..+.. |...+ |...+++....+ .++..++..+..++.
T Consensus 47 ~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~ 111 (310)
T 3mv2_B 47 LLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK-QNSPYELYLLATAQA 111 (310)
T ss_dssp HHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3344568888888877421 12344334443333 33322 778888887765 556667778899999
Q ss_pred ccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHH--h-
Q 011081 329 EIGEMARAEEFFREMGLSGV-ESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP-----EGSTIEVLIGELC--D- 399 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~--~- 399 (494)
..|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+..++. .
T Consensus 112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~ 189 (310)
T 3mv2_B 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFAT 189 (310)
T ss_dssp HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHh
Confidence 99999999999999877653 246778888999999999999999999999875 45 3566666665533 2
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC----CCCHHHHHHHHHHHH
Q 011081 400 -KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK-----GF----EPSLEIYSAFIDGYM 469 (494)
Q Consensus 400 -~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~----~p~~~~~~~li~~~~ 469 (494)
.++..+|..+|++.... .|+..+-..++.++.+.|++++|.+.++.+.+. .. +-+..+...+|....
T Consensus 190 g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~ 266 (310)
T 3mv2_B 190 NKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLAL 266 (310)
T ss_dssp TCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHH
Confidence 34899999999975443 355344445555899999999999999977642 11 335677767777777
Q ss_pred hcCCHHHHHHHHHHHHHcccc
Q 011081 470 KEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 470 ~~g~~~~a~~~~~~m~~~~~~ 490 (494)
..|+ +|.++++++.+..+.
T Consensus 267 ~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 267 MQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HTTC--TTHHHHHHHHHTTCC
T ss_pred HhCh--HHHHHHHHHHHhCCC
Confidence 7787 899999999987654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-08 Score=85.01 Aligned_cols=189 Identities=12% Similarity=-0.008 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD-CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
..+-.....+.+.|++++|+..|++..+. .|+ ...|... .... ........++.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDK--------------NSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcc--------------hhhhhHHHHHHHHHH
Confidence 33444555667778888888888887765 233 2223220 0000 000011222336666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--HH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRR--VF 404 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~ 404 (494)
|.+.|++++|+..|++..+.. +-+...+..+...|...|++++|...|++.++.+ +-+...+..+...|...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 666777777777777666654 4456666666677777777777777777766653 2245555555555544433 23
Q ss_pred HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 405 EALDILKARVVKFGLFPTEK--SYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 405 ~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
.+...+... ..|+.. .+.....++...|++++|...|++.++ +.|+......+.+
T Consensus 142 ~~~~~~~~~-----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 142 KLETDYKKL-----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHH-----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 333443321 123332 223334455566777888888877774 4677655554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-09 Score=105.62 Aligned_cols=173 Identities=10% Similarity=-0.031 Sum_probs=144.8
Q ss_pred HcCCChhHHHHHHHHHh--------cCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 011081 207 SRGKGVISGYEIYREVF--------GLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGC 278 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 278 (494)
...|++++|.+.++++. ..++ .+...|..+...+.+.|++++|++.|++..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-----------------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-----------------ESVELPLMEVRALLDLGDVAKATRKLDDLAERV- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-----------------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-----------------cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-
Confidence 77899999999999997 4333 267889999999999999999999999998864
Q ss_pred CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 279 EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 279 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
+-+...|..+..+|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++ ++.|++..+.+ +.+...|..+
T Consensus 464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~l 540 (681)
T 2pzi_A 464 GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGL 540 (681)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHH
Confidence 4467889999999999999999999999998874 4467889999999999999999 99999998875 5678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCC
Q 011081 359 VNGYCRAGDVDSAILVYNDMCRKGFEPE-GSTIEVLIGELCDKRR 402 (494)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 402 (494)
..+|.+.|++++|.+.|++..+.+ |+ ...+..+..++...+.
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 999999999999999999987764 44 5566666666655444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.6e-08 Score=83.39 Aligned_cols=176 Identities=11% Similarity=0.005 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHH
Q 011081 179 TCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFY 258 (494)
Q Consensus 179 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 258 (494)
+|++.|++..+.| ++.++..|...|...+++++|.+.|++..+.+ +...+..|...|.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------------------~~~a~~~lg~~y~ 61 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------------------DGDALALLAQLKI 61 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHH
Confidence 3444555555443 45555555555555566666666666554321 3445555555555
Q ss_pred hcC----CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHhHHHHHHHHHHc
Q 011081 259 REG----AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVE-HDVVAYNTIIGGFCE 329 (494)
Q Consensus 259 ~~g----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~ 329 (494)
. + ++++|+.+|++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|..
T Consensus 62 ~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 62 R-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp S-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred c-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 4 4 5666666666555543 34455555555554 55566666666655554310 014555555555555
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 011081 330 ----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA-G-----DVDSAILVYNDMCRKG 382 (494)
Q Consensus 330 ----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 382 (494)
.+++++|+..|++..+. ..+...+..|...|... | +.++|...|+...+.|
T Consensus 138 g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 138 GVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp TSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 45566666666655544 12223444444444432 2 5555666655555554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.1e-09 Score=106.59 Aligned_cols=174 Identities=10% Similarity=-0.051 Sum_probs=144.8
Q ss_pred HhcCChhcHHHHHHHHHHHH--------hCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccc
Q 011081 169 LEVKNIEKIETCVDIVRMLM--------SRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRV 240 (494)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
...|+ +++|++.+++.. +.. +.+...+..+..++...|++++|.+.|+++.+.++.
T Consensus 402 ~~~~~---~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------------ 465 (681)
T 2pzi_A 402 TVLSQ---PVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW------------ 465 (681)
T ss_dssp TTTCC---HHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------------
T ss_pred ccccC---HHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------------
Confidence 56777 999999999998 432 236678888999999999999999999999876544
Q ss_pred cccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011081 241 VRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 241 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
+...|..+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++ .+.|++..+.. +.+...|
T Consensus 466 -----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~ 537 (681)
T 2pzi_A 466 -----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAA 537 (681)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHH
T ss_pred -----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHH
Confidence 78899999999999999999999999998874 3367788999999999999999 99999998874 4577899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (494)
..+..+|.+.|++++|++.|++..+.+ +-+...+..+..++...++
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 999999999999999999999988764 3346677777777766554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-08 Score=100.60 Aligned_cols=154 Identities=12% Similarity=-0.034 Sum_probs=120.6
Q ss_pred CCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHH
Q 011081 209 GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVL 288 (494)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 288 (494)
.|++++|.+.|+++.+.++. +...|..+...|.+.|++++|++.|++..+.. +.+...+..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 63 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-----------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARL 63 (568)
T ss_dssp -------------------C-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 36788999999998776543 68899999999999999999999999998864 4467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA--- 365 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--- 365 (494)
...|...|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+...
T Consensus 64 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 64 GRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998874 4467899999999999999999999999998875 55678899999999999
Q ss_pred CCHHHHHHHHHHHHHCC
Q 011081 366 GDVDSAILVYNDMCRKG 382 (494)
Q Consensus 366 g~~~~a~~~~~~m~~~~ 382 (494)
|+.++|.+.+++.++.+
T Consensus 142 g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQG 158 (568)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcC
Confidence 99999999999998865
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-07 Score=81.26 Aligned_cols=177 Identities=15% Similarity=0.038 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC----CHHHHHHH
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG----EMARAEEF 339 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~ 339 (494)
.+|++.|++..+.| +...+..|...|...+++++|.++|+...+.| +...+..|...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777765 66777778888888888888888888887765 66777777777777 6 78888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHH
Q 011081 340 FREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFE-PEGSTIEVLIGELCD----KRRVFEALDIL 410 (494)
Q Consensus 340 ~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~~~~~~a~~~~ 410 (494)
|++..+.| +...+..|...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .++.++|+..|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88887654 45666777777766 77888888888888776531 015566666666766 66788888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 011081 411 KARVVKFGLFPTEKSYMFLIKGLCEE-G-----KMEEALKVQAEMVGKG 453 (494)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 453 (494)
++..... .+...+..|...|... | +.++|.++|++..+.|
T Consensus 153 ~~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7655441 2334555566666543 2 7778888777777665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.9e-09 Score=84.94 Aligned_cols=142 Identities=8% Similarity=-0.030 Sum_probs=72.9
Q ss_pred HHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhH
Q 011081 205 EVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYS 284 (494)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 284 (494)
.+...|++++|.+.+......++. +...+..+...|.+.|++++|++.|++..+.. +-+..+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~-----------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a 67 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQ-----------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKA 67 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHH-----------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcc-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 334445556666666555443221 33344455556666666666666666655543 234555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEF-FREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
|..+...|.+.|++++|...|+...+.. +-+..+|..+...|.+.|++++|.+. +++..+.. +-+...|......+.
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 5566666666666666666666655542 22455555555666666655544433 34444432 334444444444444
Q ss_pred hcC
Q 011081 364 RAG 366 (494)
Q Consensus 364 ~~g 366 (494)
..|
T Consensus 146 ~~G 148 (150)
T 4ga2_A 146 CEG 148 (150)
T ss_dssp TCC
T ss_pred HhC
Confidence 443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.3e-07 Score=81.16 Aligned_cols=232 Identities=11% Similarity=-0.022 Sum_probs=167.7
Q ss_pred CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCcCHhHHHH
Q 011081 210 KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG--AFEKVEDVWVEMARLGCEPDCYSYSV 287 (494)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ 287 (494)
...++|+++++.++..+|. +..+||.--..+...| ++++++++++.+.... +-+..+|+.
T Consensus 47 e~s~~aL~~t~~~L~~nP~-----------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~ 108 (306)
T 3dra_A 47 EYSERALHITELGINELAS-----------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNY 108 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcH-----------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHH
Confidence 3446899999999887665 7788888888888888 9999999999988764 334555654
Q ss_pred HHHHH----Hhc---CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 288 LMAVF----CEE---RRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMA--RAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 288 li~~~----~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
--..+ .+. +++++++++++.+.+.. +.|-.+|+--.-.+.+.|.++ ++++.++++.+.+ +-|...|+.-
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R 186 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHR 186 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 44444 445 78899999999988765 557888888888888888887 8999999998876 5677788877
Q ss_pred HHHHHhcCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH-HHHHHHHhC-CCCCCHHHHHHHH
Q 011081 359 VNGYCRAGD------VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALD-ILKARVVKF-GLFPTEKSYMFLI 430 (494)
Q Consensus 359 i~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~~~-~~~p~~~~~~~li 430 (494)
...+.+.+. ++++++.++.++..+ +-|...|+.+-..+.+.|+..++.. +..+..... .-..+...+..+.
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 777777666 788888888888775 3477778877777777777555333 433222111 1134667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 011081 431 KGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSA 463 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 463 (494)
..|.+.|+.++|.++++.+.+. +.|- ...|+.
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~ 298 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDY 298 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHH
Confidence 8888888888888888888753 3443 344443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-08 Score=90.45 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=99.4
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+...|++++|.+.|+++...+|. +...+..+...+.+.|++++|...+++..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-----------------NGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-----------------chhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3444555666666777777777777777665443 55666677777777777777777777665
Q ss_pred HcCCCcCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCH
Q 011081 275 RLGCEPDCYSYSVL-MAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVE-SSS 352 (494)
Q Consensus 275 ~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~ 352 (494)
.. .|+....... ...+.+.++.+.|...+++..... +.+...+..+...|...|++++|+..|+++.+.... .+.
T Consensus 179 ~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 LQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp GG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred hh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 54 3443322222 222445566666666666665553 345666666677777777777777777766665311 114
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 353 VTFEHLVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 379 (494)
..+..++..+...|+.++|...|++.+
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 556666666666666666666665543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-08 Score=84.25 Aligned_cols=160 Identities=9% Similarity=0.018 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 011081 200 NALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE 279 (494)
Q Consensus 200 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 279 (494)
..+...+...|++++|...|++....+|. +...|..+...+.+.|++++|+..+++..+. .
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~ 70 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQS-----------------RGDVKLAKADCLLETKQFELAQELLATIPLE--Y 70 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHT-----------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--G
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--c
Confidence 34444555666666666666665443322 4556666666666666666666666665443 2
Q ss_pred cCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 011081 280 PDCYSYSVLMAV-FCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVES-SSVTFEH 357 (494)
Q Consensus 280 p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ 357 (494)
|+...+..+... +...+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..
T Consensus 71 p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~ 149 (176)
T 2r5s_A 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT 149 (176)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence 233222211111 111112223455555555442 2245555556666666666666666666655543111 2335555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 011081 358 LVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~m~ 379 (494)
+...+...|+.++|...|++.+
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHH
Confidence 5555666666666665555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-07 Score=81.00 Aligned_cols=188 Identities=10% Similarity=0.025 Sum_probs=129.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC-HHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE-H-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVE-SS-SVTFE 356 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~-~~~~~ 356 (494)
+...+..+...+.+.|++++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+.... +. ...+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778899999999999999999876311 1 1357888899999999999999999999876311 11 12455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 011081 357 HLVNGYCR------------------AGDVDSAILVYNDMCRKGFEPEGS-TIEVLIGELCDKRRVFEALDILKARVVKF 417 (494)
Q Consensus 357 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 417 (494)
.+..++.. .|+.++|...|+++++.. |+.. ........ ..+.. .+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~-~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKD-RL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHH-HH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHH-HH---
Confidence 55555544 467788888888887753 3322 22111100 00000 01
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccccc
Q 011081 418 GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS----LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 418 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 491 (494)
......+...|.+.|++++|...|+++++. .|+ ...+..+..+|.+.|+.++|.+.++.+...+++.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011234567788999999999999999875 444 2568888999999999999999999998877654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.4e-08 Score=88.72 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=101.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEH-LV 359 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li 359 (494)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|...++++... .|+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 34455666667777777777777777776653 335666777777777777777777777776554 334332222 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 360 NGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKM 439 (494)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 439 (494)
..+...++.++|...+++..+.. +.+...+..+...+...|++++|++.|.+.+....-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23455566666666666666653 23455666666666666777777776666555542222245566666666666666
Q ss_pred HHHHHHHHHHH
Q 011081 440 EEALKVQAEMV 450 (494)
Q Consensus 440 ~~A~~~~~~m~ 450 (494)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666655543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-06 Score=79.36 Aligned_cols=218 Identities=8% Similarity=-0.051 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCC--ChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGK--GVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALM 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 254 (494)
-++|+++.+.++..... +..+|+.--..+...+ +++++++.++.++..+|. +..+|+.--
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-----------------~y~aW~~R~ 110 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-----------------NYQIWNYRQ 110 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-----------------CCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-----------------cHHHHHHHH
Confidence 57899999999986544 5667888888888888 999999999999887654 667777655
Q ss_pred HHH----Hhc---CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 255 VGF----YRE---GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMR--EAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 255 ~~~----~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
..+ ... +++++++++++.+.+.. +-+-.+|+.-.-.+.+.|.++ ++++.++.+.+.. +.|...|+.-..
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ 188 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 555 555 78999999999999875 557888888888888889888 9999999999876 458888988888
Q ss_pred HHHccCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCChhhHHHHHHH
Q 011081 326 GFCEIGE------MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS-AILVYNDMCRKG--FEPEGSTIEVLIGE 396 (494)
Q Consensus 326 ~~~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~ 396 (494)
.+.+.|+ ++++++.++++.... +-|...|+-+-..+.+.|+..+ +..+.+++.+.+ -..+...+..+...
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 8888777 899999999998876 7788999999989988888544 555666665533 13366788889999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 011081 397 LCDKRRVFEALDILKARVV 415 (494)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~ 415 (494)
+.+.|+.++|.++++....
T Consensus 268 ~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHh
Confidence 9999999999999996544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-07 Score=96.04 Aligned_cols=155 Identities=11% Similarity=-0.078 Sum_probs=119.7
Q ss_pred cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011081 260 EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEF 339 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (494)
.|++++|++.|++..+.. +-+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987763 3457889999999999999999999999998874 44688999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHh
Q 011081 340 FREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK---RRVFEALDILKARVVK 416 (494)
Q Consensus 340 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 416 (494)
|++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++.+..
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5578899999999999999999999999998875 33567888899999999 9999999999987776
Q ss_pred CC
Q 011081 417 FG 418 (494)
Q Consensus 417 ~~ 418 (494)
..
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-07 Score=80.04 Aligned_cols=186 Identities=7% Similarity=-0.044 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-c-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE-P-DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV----VA 319 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~ 319 (494)
+...+..+...+.+.|++++|+..|+++.+..-. | ....+..+..+|.+.|++++|...|+.+.+.. |+. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4566777788899999999999999999876311 1 13577888999999999999999999998763 332 24
Q ss_pred HHHHHHHHHc------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 320 YNTIIGGFCE------------------IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 320 ~~~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
+..+..++.+ .|++++|...|+++.+.. +-+...+.+.... ..+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~~-- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRLA-- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHHH--
Confidence 5555666554 578999999999998863 2222333221110 00111110
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 382 GFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
.....+...+.+.|++++|+..|++.+....-.|. ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01134566788899999999999987776532221 256778889999999999999999988875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-08 Score=81.75 Aligned_cols=161 Identities=8% Similarity=0.035 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-HH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG-FC 328 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~ 328 (494)
+..+...+.+.|++++|+..|++..+.. +-+...+..+...+.+.|++++|...++...... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566777788888888887766543 3355667777777888888888888887776553 243333222211 11
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 011081 329 EIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP-EGSTIEVLIGELCDKRRVFEAL 407 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~ 407 (494)
+.++..+|...|++..+.. +-+...+..+...+...|++++|...|+++++....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334666777766653 3456677777777777777777777777777654322 2446666777777777777777
Q ss_pred HHHHHHH
Q 011081 408 DILKARV 414 (494)
Q Consensus 408 ~~~~~~~ 414 (494)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-08 Score=83.01 Aligned_cols=141 Identities=10% Similarity=-0.021 Sum_probs=113.2
Q ss_pred HhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHH
Q 011081 169 LEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVH 248 (494)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (494)
...|+ +++|++.+......... +...+-.+...|.+.|++++|.+.|++.++.+|. +..
T Consensus 8 ~~~~~---~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-----------------~~~ 66 (150)
T 4ga2_A 8 RSKAD---VERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-----------------DPK 66 (150)
T ss_dssp CCHHH---HHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHH
T ss_pred HHcCh---HHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHH
Confidence 34455 89999998887653221 4456677889999999999999999999887654 789
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHhHHHHHHHHH
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKL-WEEMRDKNVEHDVVAYNTIIGGF 327 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~ 327 (494)
+|..+..+|.+.|++++|+..|++..+.. +-+..+|..+...|.+.|++++|.+. ++...+.. +-+..+|......+
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 99999999999999999999999998874 34678899999999999999876655 57777653 44677888877777
Q ss_pred HccCC
Q 011081 328 CEIGE 332 (494)
Q Consensus 328 ~~~g~ 332 (494)
...|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 77764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-07 Score=86.34 Aligned_cols=191 Identities=13% Similarity=0.139 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDK----NVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVES-SSV 353 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~ 353 (494)
.|......|...|++++|...|.+..+. |-.. -..+|+.+..+|.+.|++++|+..|++..+. |-.. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555566777778888888877766442 1000 1346777777888888888888887776432 2111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCC-HH
Q 011081 354 TFEHLVNGYCRAGDVDSAILVYNDMCRKGFE---P--EGSTIEVLIGELCDKRRVFEALDILKARVVKF---GLFPT-EK 424 (494)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~p~-~~ 424 (494)
+++.+...|.. |++++|+..|++.++.... + ...++..+...+...|++++|+..|++.+... +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 66677777777 8888888888777653110 0 13466777777888888888888887665432 11111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 011081 425 SYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS------LEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.+..+..++...|++++|...|++.. . .|+ ......++.++ ..|+.+.+.+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 45556666677788888888888877 3 332 12344455555 5566665555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-07 Score=86.31 Aligned_cols=194 Identities=12% Similarity=0.088 Sum_probs=137.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---Cc--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHh
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGC---EP--DCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVEH-DVV 318 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~ 318 (494)
.|+.....|...|++++|...|.+..+... .+ -..+|+.+...|.+.|++++|...|++..+. |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344445678889999999999988765421 11 1357888999999999999999999987543 2111 245
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hh
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLS----GVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEPE-GS 388 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~ 388 (494)
+++.+...|.. |++++|+..|++..+. +... ...++..+...|.+.|++++|+..|++.++. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 78888999988 9999999999987653 1111 1467888999999999999999999998763 21111 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHH
Q 011081 389 TIEVLIGELCDKRRVFEALDILKARVVKFGLFPTE---KSYMFLIKGLCEEGKMEEALKV 445 (494)
Q Consensus 389 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~ 445 (494)
.+..+...+...|++++|...|++.+ ...-.++. .....++.++ ..|+.+.+.++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 56666677778899999999999766 33222222 2344555555 56777766663
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.2e-07 Score=78.50 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...+..+...+...|++++|+..|++.. .|+...+..+...|.+.|++++|...|+...+.. +.+...|..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 4456677788899999999999998774 6688899999999999999999999999998764 4577889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 327 FCEIGEMARAEEFFREMGLSGVES----------------SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
|.+.|++++|.+.|++..+.. +. ....+..+...|...|++++|...|+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999998753 22 23678889999999999999999999998864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6.4e-07 Score=81.81 Aligned_cols=164 Identities=8% Similarity=-0.010 Sum_probs=110.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 202 LIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN----VHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.+..+...|++++|.+++++.....+. .|+ ...+..+...+...|++++|+..|++..+..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY---------------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCC---------------CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccC---------------ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh
Confidence 356677888888888888888764332 223 2234446666777778888888888887742
Q ss_pred CC-cC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 278 CE-PD----CYSYSVLMAVFCEERRMREAEKLWEEMRD----K-NVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 278 ~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.. ++ ..+++.+...|...|++++|...|+++.+ . +..+ ...+|..+...|.+.|++++|.+.+++..+.
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22 22 23678888888888888888888888763 1 1111 2236777888888888888888888776542
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 011081 347 ----GVES-SSVTFEHLVNGYCRAGD-VDSAILVYNDMCR 380 (494)
Q Consensus 347 ----~~~~-~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 380 (494)
+..+ -..+|..+...|.+.|+ +++|.+.|++...
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2112 25667777778888884 5788877777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.74 E-value=2.2e-05 Score=77.07 Aligned_cols=350 Identities=10% Similarity=-0.008 Sum_probs=210.6
Q ss_pred cCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCC-hhHHHHHHHHHHcCCCC-CChHHHHHHHHHHhhhcCCChhh
Q 011081 83 NNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARL-IGPARDVIRVALRSPEN-DPKLKLFEVLVKTYRECGSAPFV 160 (494)
Q Consensus 83 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 160 (494)
++.+.+..+|...... .|+...|...+....+.+. .+....+|+.++..-+. ..+..+|...+..+....
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~----- 99 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE----- 99 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS-----
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch-----
Confidence 5677888899888753 3699999998888877663 34566677766653221 112334444333221110
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHc-------------CCChhHHHHHHHHHhcCCc
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSR-------------GKGVISGYEIYREVFGLDS 227 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~~~ 227 (494)
..+++ ++.+..+|++.+.....--...|......-.. .+.+..|..+++++...-+
T Consensus 100 --------~~~~~---~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 100 --------DEQTR---IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp --------SHHHH---HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhHH---HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 02344 77888888888874221111222222211100 1123334444444422100
Q ss_pred ccccccccccccccccccCHHHHHHHHHHHHhcC-C------HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHH
Q 011081 228 DATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG-A------FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMRE 300 (494)
Q Consensus 228 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 300 (494)
..+...|...+.--...+ . .+.+..+|+++.... +-+...|...+..+.+.|+.+.
T Consensus 169 ----------------~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 169 ----------------GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp ----------------TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 013456666555432211 0 345678999988754 4567788888888899999999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC---C------C---CCCHHHHHHHHHHHHhcCCH
Q 011081 301 AEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS---G------V---ESSSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~------~---~~~~~~~~~li~~~~~~g~~ 368 (494)
|..+|++.... +.+...|.. |....+.++. ++.+.+. . . ......|...+..+.+.+..
T Consensus 232 ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 232 AKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 99999999887 444444432 2222222222 2222211 0 0 11235577777777778889
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 369 DSAILVYNDMCRKGFEPEGSTIEVLIGELC-DKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQA 447 (494)
Q Consensus 369 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (494)
+.|..+|+.. +.. ..+...|......-. ..++.+.|..+|+..+...+- +...+...++...+.|+.+.|..+|+
T Consensus 303 ~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 303 ELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999 321 123334432222222 234699999999988887643 34456677888888999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 448 EMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 448 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
++. .....|...+.--...|+.+.+.+++++..+
T Consensus 379 r~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 379 RLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 973 2578899888888888999999999988875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-06 Score=77.55 Aligned_cols=164 Identities=10% Similarity=0.031 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCcCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLG-CEPDC----YSYSVLMAVFCEERRMREAEKLWEEMRDKNVE-HD----VVA 319 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~ 319 (494)
+...+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...|+...+.... .+ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3444677888899999999998887642 12221 12334666666777888888888888764222 22 236
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hh
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLS-----GVESS-SVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEPE-GS 388 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~ 388 (494)
|+.+...|...|++++|+..|+++.+. +..+. ..+|..+...|.+.|++++|...+++.++. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 788888888888888888888887631 11222 236677777788888888888887776542 11111 34
Q ss_pred hHHHHHHHHHhcCC-HHHHHHHHHHH
Q 011081 389 TIEVLIGELCDKRR-VFEALDILKAR 413 (494)
Q Consensus 389 ~~~~li~~~~~~~~-~~~a~~~~~~~ 413 (494)
+|..+...+...|+ .++|.+.+++.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 55666666666663 46666666543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-06 Score=75.81 Aligned_cols=128 Identities=10% Similarity=-0.023 Sum_probs=110.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 011081 198 TCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLG 277 (494)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 277 (494)
.+..+...+...|++++|.+.|++.. .|+...|..+...|.+.|++++|+..|++..+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 67 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566778889999999999999883 4578899999999999999999999999998875
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HhHHHHHHHHHHccCCHHHHHHHHH
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD----------------VVAYNTIIGGFCEIGEMARAEEFFR 341 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~ 341 (494)
+.+...+..+...|...|++++|.+.|+...+.. +.+ ...+..+..+|.+.|++++|.+.|+
T Consensus 68 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 68 -KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4567889999999999999999999999998853 222 2788999999999999999999999
Q ss_pred HHHhCC
Q 011081 342 EMGLSG 347 (494)
Q Consensus 342 ~m~~~~ 347 (494)
+..+..
T Consensus 146 ~al~~~ 151 (213)
T 1hh8_A 146 LATSMK 151 (213)
T ss_dssp HHHTTC
T ss_pred HHHHcC
Confidence 998764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-06 Score=77.85 Aligned_cols=129 Identities=10% Similarity=0.028 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CCC--HHHH
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKNVEHD-----VVAYNTIIGGFCEIGEMARAEEFFREMGLSGV---ESS--SVTF 355 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~~~ 355 (494)
...+..+...|++++|.+.++...+.....+ ...+..+...+...|++++|+..|++..+... .+. ..+|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444455555555555555555544321110 01122333444455555555555555443210 111 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCR---K-GFEP--EGSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
+.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|+..+++.+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555555555442 1 0000 01244444444445555555555544433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.72 E-value=6.4e-07 Score=73.70 Aligned_cols=131 Identities=8% Similarity=0.045 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
....|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++...+.. +.+...|..+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45667778888888888888888888887764 3456777888888888888888888888887764 446677888888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEH--LVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~ 379 (494)
+|.+.|++++|...|++..+.. +.+...+.. +...+...|++++|...+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888877653 334444433 3333666778888887777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.70 E-value=7.2e-07 Score=69.17 Aligned_cols=114 Identities=11% Similarity=0.246 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...|..+...+.+.|++++|.++++++.+.. +.+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5667777777777777777777777776653 3355666777777777777777777777776653 3456666777777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 327 FCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
|.+.|++++|...|+++.+.. +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 777777777777777766543 334444444444433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.5e-07 Score=70.18 Aligned_cols=98 Identities=9% Similarity=0.102 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...|......|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..|+..++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4566677777777777777777777776654 3456667777777777777777777777776653 3456667777777
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 011081 327 FCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~ 346 (494)
|...|++++|++.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777777665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-05 Score=73.51 Aligned_cols=222 Identities=7% Similarity=-0.018 Sum_probs=147.9
Q ss_pred CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCcCHhHHHHH
Q 011081 210 KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG-AFEKVEDVWVEMARLGCEPDCYSYSVL 288 (494)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~l 288 (494)
+..++|++++++++..+|. +..+|+.--..+...| .+++++++++.+.... +-+..+|+.-
T Consensus 68 e~se~AL~lt~~~L~~nP~-----------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR 129 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-----------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHR 129 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-----------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3446788888888776654 6777888777777778 5889999998888765 4466677776
Q ss_pred HHHHHhc-C-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 289 MAVFCEE-R-RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMA--------RAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 289 i~~~~~~-g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
...+.+. + ++++++++++.+.+.. +.|-.+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+..
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R 207 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 6666666 6 7888888888888764 447777776666665555555 8888888888775 5677788887
Q ss_pred HHHHHhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH--------------------HHHHHHHH
Q 011081 359 VNGYCRAGD-------VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV--------------------FEALDILK 411 (494)
Q Consensus 359 i~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~--------------------~~a~~~~~ 411 (494)
...+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|+. ....+...
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 777777765 677888888877764 33666666665555555543 11111111
Q ss_pred HHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 412 ARVVKF----GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK 452 (494)
Q Consensus 412 ~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (494)
+..... .-.+.......+++.|...|+.++|.++++.+.+.
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 111110 01245566667777777777777777777777543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-05 Score=71.43 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=149.8
Q ss_pred HCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcC-ChhcHHHHHHHHHHHHhCCCCcC
Q 011081 117 RARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVK-NIEKIETCVDIVRMLMSRGLSVK 195 (494)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~a~~~~~~m~~~g~~~~ 195 (494)
+....++|+++++.++.. ...+..+|+.--.++...| . ++++++.++.+.....+ +
T Consensus 66 ~~e~se~AL~lt~~~L~~-------------------nP~~ytaWn~R~~iL~~l~~~---l~eEL~~~~~~L~~nPK-n 122 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM-------------------NPAHYTVWQYRFSLLTSLNKS---LEDELRLMNEFAVQNLK-S 122 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHTTCC-C
T ss_pred hCCCCHHHHHHHHHHHHh-------------------CchhHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhCCC-c
Confidence 334456788888877762 2233344554444445555 5 99999999999987665 7
Q ss_pred hHhHHHHHHHHHcC-C-ChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHh--------H
Q 011081 196 VSTCNALIWEVSRG-K-GVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFE--------K 265 (494)
Q Consensus 196 ~~~~~~ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--------~ 265 (494)
..+|+.-..++.+. + +.++++++++.+++.++. |..+|+--.-.+.+.|.++ +
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-----------------Ny~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-----------------NYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-----------------CHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHhccccccchhhHHH
Confidence 88899888888776 6 889999999999887654 8888888777776666666 8
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH-----
Q 011081 266 VEDVWVEMARLGCEPDCYSYSVLMAVFCEERR-------MREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM----- 333 (494)
Q Consensus 266 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----- 333 (494)
+++.++++.+.. .-|...|+.....+.+.+. ++++++.++.+.... +-|...|+-+-..+.+.|+.
T Consensus 186 ELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 186 ELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccc
Confidence 888999888876 4477888888777777775 678888887777664 45777787766666666553
Q ss_pred ---------------HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 334 ---------------ARAEEFFREMGLSG-----VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 334 ---------------~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
....+...++...+ -.++...+..++..|...|+.++|.++++.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222211 024555666666666666666666666666653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-06 Score=72.21 Aligned_cols=94 Identities=9% Similarity=0.045 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
+..+...+...|++++|...|+...+.. +.+..+|..+..+|...|++++|.+.|++..+.. +.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444444444444444443332 2233344444444444444444444444443332 2233334444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 011081 365 AGDVDSAILVYNDMCR 380 (494)
Q Consensus 365 ~g~~~~a~~~~~~m~~ 380 (494)
.|++++|...|++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.4e-07 Score=76.55 Aligned_cols=25 Identities=16% Similarity=-0.092 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 426 YMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
+..+...+...|++++|.+.+++..
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455555666666666666665554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.3e-06 Score=74.69 Aligned_cols=168 Identities=7% Similarity=-0.027 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD-----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNV---EHD- 316 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~- 316 (494)
....+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345566678888999999999999988776532211 12244466667788999999999998875421 111
Q ss_pred -HhHHHHHHHHHHccCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC
Q 011081 317 -VVAYNTIIGGFCEIGEMARAEEFFREMGL---S-GVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG----FEP 385 (494)
Q Consensus 317 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p 385 (494)
..+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|+..+++.++.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 45889999999999999999999998863 2 1111 12588889999999999999999999876532 111
Q ss_pred -ChhhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 011081 386 -EGSTIEVLIGELCDKRRVFEA-LDILKAR 413 (494)
Q Consensus 386 -~~~~~~~li~~~~~~~~~~~a-~~~~~~~ 413 (494)
-..+|..+...|...|+.++| ...+++.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 145677778888888888888 6656643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=9.9e-07 Score=69.01 Aligned_cols=120 Identities=8% Similarity=0.028 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 56677777788888888888888888877653 3356677777777888888888888888777653 335667777777
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 368 (494)
.|.+.|++++|...|++..+.. +.+...+..+...+.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 7788888888888887776653 34556666666666666553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.8e-07 Score=82.06 Aligned_cols=96 Identities=14% Similarity=-0.019 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555555555566666666665555442 2245555556666666666666666666655543 33455555566666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011081 363 CRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~ 380 (494)
...|++++|...|+...+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-06 Score=75.37 Aligned_cols=206 Identities=8% Similarity=-0.055 Sum_probs=143.2
Q ss_pred hcCChhcHHHHHHHHHHHHhCCCCcChHhHHHH-------HHHHHcCCChhHHHHHHHHHhcCCccccccccc-ccc---
Q 011081 170 EVKNIEKIETCVDIVRMLMSRGLSVKVSTCNAL-------IWEVSRGKGVISGYEIYREVFGLDSDATAGIGK-DVK--- 238 (494)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~--- 238 (494)
..++ ...|.+.|.+..+.... ....|+.+ ..++.+.++..++...+...++..+........ ...
T Consensus 18 ~~~d---~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMS---EARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCC---HHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 4577 99999999999987644 56777777 455555555566666666665544431110000 000
Q ss_pred cccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C
Q 011081 239 RVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH--D 316 (494)
Q Consensus 239 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~ 316 (494)
-.+.+.--...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 000111123445667788889999999999999887654 544466667778999999999999998665432 11 1
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
...+..+..++.+.|++++|+..|++.......| ..........++.+.|+.++|..+|+++...+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3477888899999999999999999987544324 34466777888899999999999999998864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=68.85 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=92.2
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
..+......|.+.|++++|.+.|++.++.+|. +..+|..+..+|.+.|++++|+..|++.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-----------------NAILYSNRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence 55777888999999999999999999876654 7889999999999999999999999999887
Q ss_pred CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 277 GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
. +.+...|..+..+|...|++++|.+.|+...+.. +-+...+..+..
T Consensus 77 ~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 77 D-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred h-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 5 4467889999999999999999999999998873 335555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-06 Score=67.30 Aligned_cols=115 Identities=12% Similarity=0.207 Sum_probs=92.3
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
...+..+...+...|++++|.+.|+++....+. +..+|..+...+.+.|++++|..+++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566778888889999999999999998765432 677888999999999999999999999887
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.+
T Consensus 72 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 72 LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 64 4467788889999999999999999999988764 3455566666555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-06 Score=69.23 Aligned_cols=120 Identities=11% Similarity=0.053 Sum_probs=81.0
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
..+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3466777777888888888888888888777653 3356667777777777777777777777776653 3356677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (494)
..+|.+.|++++|.+.|++..+.. +.+...+..+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 777777777777777777766543 233444555555554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.5e-07 Score=74.45 Aligned_cols=122 Identities=7% Similarity=0.059 Sum_probs=98.7
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-HHccCCH--H
Q 011081 258 YREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG-FCEIGEM--A 334 (494)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~ 334 (494)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|+...+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45688999999999887764 4467888999999999999999999999988764 3467788888888 7788998 9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 335 RAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
+|...|++..+.. +.+...+..+...|...|++++|...|+.+.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999988775 4567888888999999999999999999998864
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=74.91 Aligned_cols=157 Identities=12% Similarity=0.008 Sum_probs=113.6
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhHHHHHHHHHHccCC
Q 011081 258 YREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVE-HDVVAYNTIIGGFCEIGE 332 (494)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~ 332 (494)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966555432 1235677888999999999999999999987652 212 235678888899999999
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcC
Q 011081 333 MARAEEFFREMGLS----GVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFE-PEGSTIEVLIGELCDKR 401 (494)
Q Consensus 333 ~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~~ 401 (494)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. .-..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987653 2111 2455788888999999999999999987742 211 11234577788889999
Q ss_pred CHHHHHHHHHHHHH
Q 011081 402 RVFEALDILKARVV 415 (494)
Q Consensus 402 ~~~~a~~~~~~~~~ 415 (494)
++++|.+.+++.+.
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999885443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5e-07 Score=73.18 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 55667777778888888888888888877764 3456777777788888888888888888877664 345677777888
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 011081 326 GFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~ 346 (494)
+|.+.|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.6e-07 Score=73.33 Aligned_cols=99 Identities=15% Similarity=0.053 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|+...... +.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 45556666666777777777777777666553 3355566666666667777777777776666543 334556666666
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 011081 326 GFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~ 346 (494)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-06 Score=68.44 Aligned_cols=118 Identities=9% Similarity=-0.012 Sum_probs=77.8
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+...|++++|.+.|++.....+. +...|..+...+...|++++|+..+++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----------------DAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-----------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455666677777777777777777777665432 56667777777777777777777777776
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|
T Consensus 78 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 78 QLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 653 3355667777777777777777777777776552 223455555555555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.1e-07 Score=81.88 Aligned_cols=193 Identities=6% Similarity=-0.034 Sum_probs=124.4
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
...+..+...+.+.|+ +++|+..|+...+.... +...|..+..+|.+.|++++|.+.++++...++.
T Consensus 4 a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------- 70 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRK---YPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--------- 70 (281)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---------
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------
Confidence 3455666777888888 99999999998886433 6778888888999999999999999999876554
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC-YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD 316 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 316 (494)
+...|..+..+|.+.|++++|+..|++..+.. |+. ..+...+....+. .++.. +..........+
T Consensus 71 --------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~ 136 (281)
T 2c2l_A 71 --------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQE 136 (281)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCC
T ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhh
Confidence 67888888999999999999999998877642 211 1111112111111 11111 222222333444
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA-GDVDSAILVYNDMCR 380 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 380 (494)
......+... ..|+.++|++.+++..+.. +.+......+...+.+. +.+++|.++|..+.+
T Consensus 137 ~~i~~~l~~l--~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 137 SELHSYLTRL--IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CHHHHHHHHH--HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4444444332 2688888888888777653 23333334444444444 567788888887765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-07 Score=75.80 Aligned_cols=122 Identities=8% Similarity=0.129 Sum_probs=100.7
Q ss_pred HcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHH
Q 011081 207 SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYS 286 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 286 (494)
...|++++|.+.+++.....+. +...|..+...|...|++++|...|++..+.. +.+...+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 82 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-----------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYA 82 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 4567888999999988765543 77899999999999999999999999998764 34667788
Q ss_pred HHHHH-HHhcCCH--HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 287 VLMAV-FCEERRM--REAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 287 ~li~~-~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
.+... +...|++ ++|...++...+.. +.+...+..+...|...|++++|...|++..+..
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888 7789998 99999999998874 4467889999999999999999999999998864
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-06 Score=76.11 Aligned_cols=187 Identities=6% Similarity=-0.095 Sum_probs=130.2
Q ss_pred cCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHH-------HHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 011081 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNAL-------MVGFYREGAFEKVEDVWVEMARLGCEP 280 (494)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p 280 (494)
..++...|.+.|.++...+|. ....|+.+ ...+.+.++..+++..+..-.+ +.|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-----------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p 78 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-----------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISM 78 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCG
T ss_pred cCCCHHHHHHHHHHHHHhChh-----------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CCh
Confidence 578999999999999887765 67888887 4666666666666666655444 222
Q ss_pred C----------------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 281 D----------------------CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 281 ~----------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
+ ...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+.
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHH
Confidence 1 1233456677888899999999998887653 444366667778888899999999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 339 FFREMGLSGVESS--SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE--GSTIEVLIGELCDKRRVFEALDILKARV 414 (494)
Q Consensus 339 ~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~ 414 (494)
.|+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|++..
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887554321 111 23667778888888888888888888875432243 2344555666777888888888887655
Q ss_pred Hh
Q 011081 415 VK 416 (494)
Q Consensus 415 ~~ 416 (494)
..
T Consensus 236 a~ 237 (282)
T 4f3v_A 236 TT 237 (282)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-06 Score=67.49 Aligned_cols=120 Identities=8% Similarity=0.055 Sum_probs=82.9
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+...|++++|.+.|++.....+. +...|..+...+...|++++|...+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-----------------NAVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3455666667777777777777777777654332 56677777777777888888888887777
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM 333 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (494)
+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 74 CID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred hcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 653 3346677777777888888888888887776653 33566666777776666653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-06 Score=79.62 Aligned_cols=130 Identities=8% Similarity=0.012 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD----------------CYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
+...|..+...|.+.|++++|+..|++..+.. |+ ..+|..+..+|.+.|++++|...+++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788889999999999999999999988764 33 3677888888888888888888888887
Q ss_pred hCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 011081 310 DKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSA-ILVYNDMC 379 (494)
Q Consensus 310 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 379 (494)
+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.|+.++| ...|+.|.
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 4467788888888888888888888888887764 45667777777788888887777 44555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-06 Score=68.73 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=72.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNG 361 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 361 (494)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3456667777777788888888887777664 4466777777777777888888888877777654 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 011081 362 YCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~~~ 382 (494)
|...|++++|...|+..++..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777788888887777777653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=71.10 Aligned_cols=96 Identities=8% Similarity=-0.063 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
..+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..|++..... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344445555555555555555555555442 2345555555555555555555555555555443 33444555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011081 363 CRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~ 380 (494)
...|++++|...|+..++
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.6e-05 Score=67.94 Aligned_cols=235 Identities=9% Similarity=0.013 Sum_probs=166.1
Q ss_pred HHHHHHHHHH---HHhcCCHh-HHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCC
Q 011081 247 VHTFNALMVG---FYREGAFE-KVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR----------MREAEKLWEEMRDKN 312 (494)
Q Consensus 247 ~~~~~~li~~---~~~~g~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g 312 (494)
+..|..+.+. ..+.|.++ +|+++++.+...+ +-+..+|+.--..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 4445444433 34566655 7999999998764 2234445543333333332 678899999988764
Q ss_pred CCCCHhHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhh
Q 011081 313 VEHDVVAYNTIIGGFCEIG--EMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD-VDSAILVYNDMCRKGFEPEGST 389 (494)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~ 389 (494)
+-+..+|+.-...+.+.| .+++++++++.+.+.. +.|...|+.-...+...|. ++++++.++.+++.++ -|...
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SA 181 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSS 181 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHH
Confidence 557888888888888877 4899999999999886 6788899888888888888 6999999999998764 36777
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHH
Q 011081 390 IEVLIGELCDK--------------RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEE-----------GKMEEALK 444 (494)
Q Consensus 390 ~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~ 444 (494)
|+.....+.+. +.++++++.+.+.+... +-|...|+-+-..+.+. +.++++++
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 77766655554 45788999999888765 24556666554444444 45889999
Q ss_pred HHHHHHhCCCCCCHHHHHH--HH---HHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 445 VQAEMVGKGFEPSLEIYSA--FI---DGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 445 ~~~~m~~~~~~p~~~~~~~--li---~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
.++++.+. .||. .|.. ++ .+....|..+++...+.++++.+|.
T Consensus 260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 99999964 6663 3332 21 2223568888999999999987663
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-07 Score=78.75 Aligned_cols=132 Identities=8% Similarity=0.019 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGC-EPD--------------CYSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
....+..+...+.+.|++++|+..|++..+..- .|+ ...|..+..+|.+.|++++|...++...+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455667777778888888888888888776421 110 14566666666777777777777776665
Q ss_pred CCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 011081 311 KNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAI-LVYNDMC 379 (494)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~ 379 (494)
.. +.+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...++.+++. ..|..|.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 3355666666677777777777777777666543 334555555655555555555544 3344443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=8.8e-06 Score=62.13 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4556666677777777777777777766653 3355566666667777777777777777666553 3345666666666
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 011081 327 FCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~ 346 (494)
|...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777666654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-06 Score=69.51 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...|+...... +.+...|..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 45666777778888888888888888887764 4466777788888888888888888888887764 446677778888
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 011081 326 GFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~ 346 (494)
+|...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-06 Score=78.73 Aligned_cols=145 Identities=7% Similarity=-0.022 Sum_probs=110.4
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccccc-CHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRP-NVHTFNALMVGFYREGAFEKVEDVWVEM 273 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 273 (494)
+...+..+...|.+.|++++|.+.|++++...+.....-. .......| ...+|..+..+|.+.|++++|+..+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh---HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456777788888888888888888888765443000000 00000000 1588999999999999999999999999
Q ss_pred HHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH-HHHHHHHH
Q 011081 274 ARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARA-EEFFREMG 344 (494)
Q Consensus 274 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 344 (494)
.+.. +.+...|..+..+|...|++++|...|++..+.. +.+..++..+..++.+.|+.++| ..+|+.|.
T Consensus 223 l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 223 LELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9875 4477889999999999999999999999998874 44678899999999999999988 45666664
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00019 Score=70.39 Aligned_cols=83 Identities=11% Similarity=0.109 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCC-hhHHHHHHHHHhcCCccccccccccccccccc-ccCHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKG-VISGYEIYREVFGLDSDATAGIGKDVKRVVRV-RPNVHTFNALM 254 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~li 254 (494)
.+.+.++|++.+.. .|++..|...+.-..+.+. .+....+|+.+... .|. ..+...|...+
T Consensus 30 ~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~---------------vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 30 YRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ---------------FENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH---------------STTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH---------------cCCCcccHHHHHHHH
Confidence 99999999999873 4688899888877766653 35567777777542 111 23667788877
Q ss_pred HHHH----hcCCHhHHHHHHHHHHHc
Q 011081 255 VGFY----REGAFEKVEDVWVEMARL 276 (494)
Q Consensus 255 ~~~~----~~g~~~~a~~~~~~m~~~ 276 (494)
..+. ..|+.+.+..+|++.+..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 6554 245677888888888763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-05 Score=74.51 Aligned_cols=197 Identities=10% Similarity=-0.046 Sum_probs=115.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCcCH----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 011081 254 MVGFYREGAFEKVEDVWVEMARLGCEPDC----------------YSYSVLMAVFCEERRMREAEKLWEEMRDKN-VEHD 316 (494)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~ 316 (494)
...+.+.|++++|++.|.++.+..-.... ..+..+...|.+.|++++|.+++..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 35567788888888888888775322110 135667778888888888888877765421 0111
Q ss_pred H----hHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 011081 317 V----VAYNTIIGGFCEIGEMARAEEFFREMGLS----GVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRK--GF-- 383 (494)
Q Consensus 317 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-- 383 (494)
. .+.+.+-..+...|++++|.+++++.... +..+ -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12333334444567777777777766432 2222 2345666777777777777777777776542 11
Q ss_pred CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 384 EP-EGSTIEVLIGELCDKRRVFEALDILKARVVKF---GLFPT--EKSYMFLIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 384 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (494)
.+ ...++..++..|...|++++|..++++..... +..+. ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 13356666677777777777777776544321 11111 1344555555666677777777666664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-05 Score=62.46 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG 326 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (494)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...++...+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3455666666666777777777776666553 3345566666666666666666666666666553 3345566666666
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 011081 327 FCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~ 345 (494)
|...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-05 Score=60.72 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=79.4
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
...+..+...+...|++++|.+.|++.....+. +...|..+...+.+.|++++|...+++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 66 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 445666777777888888888888887664432 667778888888888888888888888777
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
.. +.+...+..+...+...|++++|.+.++...+.+ +.+...+..+.
T Consensus 67 ~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 67 LK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 64 3356677788888888888888888888887663 23444444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-05 Score=62.49 Aligned_cols=98 Identities=10% Similarity=0.044 Sum_probs=73.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNG 361 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 361 (494)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777778888888888888777654 4466777788888888888888888888877764 4556777777778
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 011081 362 YCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~~ 381 (494)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888777664
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.6e-05 Score=75.27 Aligned_cols=164 Identities=5% Similarity=-0.091 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHh
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARL-GCEPDCY----SYSVLMAVFCEERRMREAEKLWEEMRD----KNVEH-DVV 318 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~-~~~ 318 (494)
++..+...|.+.|++++|.+++..+... +..++.. +.+.+-..+...|+++.|..+++.... .+..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4667778888888888888888776543 1111221 222233334446778888888777643 22222 245
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--h
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLS----GVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEPE--G 387 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~ 387 (494)
++..+...|...|++++|..+++++... +-.+ ...++..++..|...|++++|..+++..... +..+. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6777788888888888888888876543 1111 2346777778888888888888888776542 11111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 388 STIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 388 ~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
..+..+...+...+++++|...|.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445555666677888888777763
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-05 Score=66.15 Aligned_cols=99 Identities=10% Similarity=0.043 Sum_probs=63.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN 360 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (494)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34456666666667777777777776666553 3356666666666666777777777766666553 344566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 011081 361 GYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~ 381 (494)
.|...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.7e-06 Score=64.05 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV--EHD----VVAYN 321 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 321 (494)
.++..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|++.++..++... ..+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344445555555555555555555554442 22344455555555555555555555555443210 000 12455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
.+..+|...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555556666666666666665554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.7e-06 Score=63.46 Aligned_cols=109 Identities=10% Similarity=0.165 Sum_probs=88.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCC----HHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG--VESS----SVTF 355 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~----~~~~ 355 (494)
..++..+...+.+.|++++|+..|++.++.. +.+...|+.+..+|.+.|++++|++.|++..+.+ ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3567789999999999999999999998874 4578899999999999999999999999987642 1111 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 011081 356 EHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVL 393 (494)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 393 (494)
..+...+...|++++|++.|++.++. .||..+...+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 88899999999999999999998875 4565554433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.31 E-value=7.8e-06 Score=63.79 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNV--EHD----VVAY 320 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~ 320 (494)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+... .++ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4556667777777777777777777776654 33556667777777777777777777777655421 111 5566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
..+..+|.+.|++++|.+.|++..+. .|+...+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 66667777777777777777776654 2344444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00076 Score=61.69 Aligned_cols=234 Identities=9% Similarity=-0.029 Sum_probs=167.1
Q ss_pred HcCCCh-hHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC----------HhHHHHHHHHHHH
Q 011081 207 SRGKGV-ISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA----------FEKVEDVWVEMAR 275 (494)
Q Consensus 207 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~ 275 (494)
.+.|.+ ++|+++++.++..+|. +..+||.--..+...+. +++++.+++.+..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-----------------~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 102 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-----------------hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 344554 4899999999988765 67777765444444333 6789999999988
Q ss_pred cCCCcCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCH
Q 011081 276 LGCEPDCYSYSVLMAVFCEER--RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE-MARAEEFFREMGLSGVESSS 352 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~ 352 (494)
.. +-+..+|+.-.-.+.+.+ .+++++.+++.+.+.. +-|..+|+--.-.+...|. ++++++.++++.+.. +-|.
T Consensus 103 ~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~ 179 (331)
T 3dss_A 103 VN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNY 179 (331)
T ss_dssp HC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCH
T ss_pred hC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCH
Confidence 65 457778887777777877 4899999999998875 5588889888888888888 599999999999876 6788
Q ss_pred HHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHHHHH
Q 011081 353 VTFEHLVNGYCRA--------------GDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK-----------RRVFEAL 407 (494)
Q Consensus 353 ~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------~~~~~a~ 407 (494)
..|+.....+.+. +.++++++.++..+... +-|...|+.+-..+.+. +.+++++
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 8888877766655 45789999999998865 33667776555555554 4578888
Q ss_pred HHHHHHHHhCCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 011081 408 DILKARVVKFGLFPTE-KSYMFLIK---GLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFID 466 (494)
Q Consensus 408 ~~~~~~~~~~~~~p~~-~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~ 466 (494)
+.+.+.++.. |+. ..+..++. +....|..+++...+.++++. .|. ..-|.-+..
T Consensus 259 ~~~~elle~~---pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 259 ESCKELQELE---PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHHH
T ss_pred HHHHHHHhhC---cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHHH
Confidence 8888766654 553 22222221 222457788888999999853 554 333444333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.6e-06 Score=61.84 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhHHHHHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH--DVVAYNTIIGGF 327 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~ 327 (494)
|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...|..+..+|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3344444444444444444444444332 2233334444444444444444444444444332 11 233444444444
Q ss_pred Hcc-CCHHHHHHHHHHHHh
Q 011081 328 CEI-GEMARAEEFFREMGL 345 (494)
Q Consensus 328 ~~~-g~~~~A~~~~~~m~~ 345 (494)
.+. |++++|.+.|++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 444 444444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-05 Score=62.37 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
..+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|++..+.. +.+...|..+...|
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 334444444444444444444444443332 2233444444444444444444444444444432 22334444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011081 363 CRAGDVDSAILVYNDMC 379 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~ 379 (494)
...|++++|...|+...
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-05 Score=68.89 Aligned_cols=148 Identities=9% Similarity=-0.038 Sum_probs=100.0
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
...+..+...+...|++++|.+.|++.....+......... ............|..+..+|.+.|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI-LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34456677778888999999999998876544200000000 00000000137888999999999999999999999988
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH-HHHHHHHhC
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAE-EFFREMGLS 346 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~ 346 (494)
.. +.+...+..+..+|...|++++|...|+...+.. +.+...+..+..++...++.+++. ..|..|...
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 74 4567889999999999999999999999998764 446778888888888888777766 555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-05 Score=64.70 Aligned_cols=101 Identities=10% Similarity=0.054 Sum_probs=90.5
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
..+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|+...+.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3467889999999999999999999999998875 4477889999999999999999999999998875 4468899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC
Q 011081 324 IGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
..+|.+.|++++|.+.|++..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999998875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-05 Score=62.30 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=84.0
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
..+...|..+...+.+.|++++|...|++..+. .|+ ...+..+...|...|++++|...++...+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346788888889999999999999999988875 455 5677778888888888888888888877653 335677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHL 358 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (494)
|..+..+|...|++++|...|++..+.. +.+...+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 7888888888888888888888877653 3334444333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-05 Score=61.16 Aligned_cols=100 Identities=8% Similarity=-0.005 Sum_probs=88.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVES--SSVTFEHL 358 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l 358 (494)
+...+..+...+.+.|++++|...++...+.. +.+...|..+...|...|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45567788889999999999999999998764 4577889999999999999999999999998874 44 68889999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCC
Q 011081 359 VNGYCRA-GDVDSAILVYNDMCRKG 382 (494)
Q Consensus 359 i~~~~~~-g~~~~a~~~~~~m~~~~ 382 (494)
...+... |++++|.+.++...+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999 99999999999998865
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-05 Score=62.04 Aligned_cols=101 Identities=7% Similarity=-0.027 Sum_probs=90.0
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
..+...|..+...+.+.|++++|...|.+..+.. +.+...|..+...+...|++++|...++...+.. +.+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3478899999999999999999999999998875 4467889999999999999999999999998875 4478899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC
Q 011081 324 IGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
..+|...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-05 Score=63.11 Aligned_cols=97 Identities=12% Similarity=0.018 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGY 362 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (494)
..+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..|++....+ +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344555556666666666666666666543 3355566666666666666666666666666553 34455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 011081 363 CRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~ 381 (494)
...|++++|...|+..++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=8.2e-06 Score=63.66 Aligned_cols=113 Identities=12% Similarity=0.195 Sum_probs=87.8
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
...+..+...+...|++++|...|++.....+. +...+..+...+...|++++|...+++..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-----------------NMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 355677888888899999999999988765432 678888899999999999999999998877
Q ss_pred cCC--CcC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011081 276 LGC--EPD----CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF 327 (494)
Q Consensus 276 ~g~--~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (494)
... .++ ..++..+...+.+.|++++|.+.|+...+. .|+...+..+....
T Consensus 67 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 531 112 667888889999999999999999998876 35665555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.6e-05 Score=60.34 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=77.2
Q ss_pred ChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMA 274 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 274 (494)
+...+..+...+...|++++|.+.|++.....+. ..-....|..+...|.+.|++++|+..+++..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT--------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc--------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4566677777777788888888888877664331 00015677777778888888888888888777
Q ss_pred HcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 275 RLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 275 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 93 ~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 93 EKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred hhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 653 3356677777778888888888888888877653 223444443333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=65.41 Aligned_cols=135 Identities=13% Similarity=0.096 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-cC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCE-PD----CYSYSVLMAVFCEERRMREAEKLWEEMRDK----NVEH- 315 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~- 315 (494)
...++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +..+
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3556778888888889999998888887654211 11 135667777778888888888888776542 1000
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVE-SSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
...++..+...|...|++++|.+.+++..+. +.. .....+..+...|...|++++|.+.+++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1345666667777777777777777665432 111 1123445555566666666666666665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=64.74 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 425 SYMFLIKGLCEEGKMEEALKVQAEMVGK----GFEP-SLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455556666666666666666665532 1111 1345556666777777777777777776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-05 Score=60.99 Aligned_cols=94 Identities=9% Similarity=-0.035 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444555556666666666666655543 2245555555566666666666666666655543 2244555555566666
Q ss_pred cCCHHHHHHHHHHHHh
Q 011081 330 IGEMARAEEFFREMGL 345 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~ 345 (494)
.|++++|+..|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.8e-05 Score=60.15 Aligned_cols=97 Identities=9% Similarity=-0.040 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +-+...+..+...|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35567778899999999999999998874 4578899999999999999999999999998875 557788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 011081 364 RAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~ 382 (494)
..|++++|...|++.++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00016 Score=56.11 Aligned_cols=92 Identities=9% Similarity=0.151 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHH
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDC---YSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD---VVAYNTIIGG 326 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~ 326 (494)
+...+.+.|++++|...|++..+.. +.+. ..+..+..++.+.|++++|...|+...+.. +.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4455556666666666666665542 1122 355555666666666666666666665542 112 4445555666
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 011081 327 FCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~ 346 (494)
|.+.|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=78.56 Aligned_cols=124 Identities=7% Similarity=0.047 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
|..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344456678899999999999998874 4457889999999999999999999999999874 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011081 330 IGEMARAEEFFREMGLSGVESSSVTFEHLVNG--YCRAGDVDSAILVYN 376 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 376 (494)
.|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998764 3344455555555 888899999999998
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.06 E-value=5.6e-05 Score=71.23 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------------C-CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLG--------------C-EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
...|..+...+.+.|++++|+..|++..+.- . +.+..+|..+..+|.+.|++++|++.+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4457777888888888888888888876520 0 112233444444444444444444444444443
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 312 NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 22334444444444444444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.06 E-value=5.2e-05 Score=73.79 Aligned_cols=123 Identities=7% Similarity=-0.009 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD----------------CYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
....|..+...|.+.|++++|+..|++..+.. |+ ...|..+..+|.+.|++++|+..+++.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45667788888888889999988888887642 22 3555666666666666666666666665
Q ss_pred hCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011081 310 DKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAI 372 (494)
Q Consensus 310 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 372 (494)
+.. +.+...|..+..+|...|++++|+..|++..+.. +-+...+..+...+.+.++.+++.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3355566666666666666666666666665543 334445555555555555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=78.83 Aligned_cols=122 Identities=13% Similarity=0.066 Sum_probs=98.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEP 280 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 280 (494)
.+...+.+.|++++|.+.|+++.+..+. +..+|..+..+|.+.|++++|++.+++..+.. +.
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~ 72 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KK 72 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 3445567789999999999999876543 68999999999999999999999999999874 44
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH--HHccCCHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGG--FCEIGEMARAEEFFR 341 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 341 (494)
+..+|..+..+|.+.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 67889999999999999999999999998764 3345566666666 888899999999998
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00014 Score=56.50 Aligned_cols=93 Identities=12% Similarity=0.061 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 011081 287 VLMAVFCEERRMREAEKLWEEMRDKNVEHDV---VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS---SVTFEHLVN 360 (494)
Q Consensus 287 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~ 360 (494)
.+...+.+.|++++|...|+...+.. +.+. ..+..+..+|.+.|++++|...|++..+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 35556677788888888887776653 1222 466677777777788888888877776653 222 455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 011081 361 GYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~ 381 (494)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-05 Score=60.70 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=58.0
Q ss_pred cCCHhHHHHHHHHHHHcC--CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011081 260 EGAFEKVEDVWVEMARLG--CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAE 337 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (494)
.|++++|+..|++..+.+ -+-+...+..+...|.+.|++++|...|++..+.. +-+..++..+..+|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 567777888887777653 12234566777777777888888888887777664 335667777777777778888887
Q ss_pred HHHHHHHhC
Q 011081 338 EFFREMGLS 346 (494)
Q Consensus 338 ~~~~~m~~~ 346 (494)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.01 E-value=8.2e-05 Score=72.40 Aligned_cols=145 Identities=9% Similarity=-0.013 Sum_probs=98.4
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HhHHHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD--------------VVAYNTIIGGF 327 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~ 327 (494)
++++|...|+...+.. .-....|..+...|.+.|++++|...|++..+...... ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444332221 11345678888899999999999999999877531111 46777888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEAL 407 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 407 (494)
.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.++.. +-+...+..+...+...++.+++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877764 4567777788888888888888888888877753 224456666666666666666655
Q ss_pred HH
Q 011081 408 DI 409 (494)
Q Consensus 408 ~~ 409 (494)
+.
T Consensus 406 ~~ 407 (457)
T 1kt0_A 406 RR 407 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-05 Score=61.55 Aligned_cols=84 Identities=11% Similarity=0.028 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 296 RRMREAEKLWEEMRDKN--VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAIL 373 (494)
Q Consensus 296 g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (494)
|++++|+..|++..+.+ -+.+..+|..+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444432 11123344444444444444444444444444432 2233444444444444444444444
Q ss_pred HHHHHHH
Q 011081 374 VYNDMCR 380 (494)
Q Consensus 374 ~~~~m~~ 380 (494)
.|++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00013 Score=59.63 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--------C---------CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARL--------G---------CEPDCYSYSVLMAVFCEERRMREAEKLWEEM 308 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 308 (494)
....+......+.+.|++++|+..|.+..+. . -+.+...|..+..+|.+.|++++|...++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567888888999999999999999988764 0 0112245555666666666666666666666
Q ss_pred HhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 309 RDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
++.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5543 334556666666666666666666666665554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.97 E-value=7.4e-05 Score=70.37 Aligned_cols=138 Identities=7% Similarity=-0.005 Sum_probs=100.9
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccc-ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRV-RPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
..+..+...+.+.|++++|.+.|++++...+.... .....+.... .-+..+|+.+..+|.+.|++++|+..+++..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA--AAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--HSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcc--ccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34667778888899999999999888652110000 0000000001 22578899999999999999999999999998
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEE 338 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 338 (494)
.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+.+.++.+++.+
T Consensus 302 ~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 ID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 3467789999999999999999999999998874 3467777888888877777776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00012 Score=59.72 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=77.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDK--------N---------VEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
...+......+.+.|++++|...|...... . -+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677788899999999999999987764 0 02234577788888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 345 LSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
+.+ +.+...|..+..+|...|++++|...|+..++..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 764 5567788888888888888888888888887753
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.7e-05 Score=71.57 Aligned_cols=148 Identities=9% Similarity=-0.009 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
....|..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+ . ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHH
Confidence 4566778888888999999999999988765 344331 11222223322211 1 125666667
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHH
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGE-LCDKRRVF 404 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~ 404 (494)
+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+..++... -+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766653 34566667777777777777777777777655421 122333333333 22334555
Q ss_pred HHHHHHHHHH
Q 011081 405 EALDILKARV 414 (494)
Q Consensus 405 ~a~~~~~~~~ 414 (494)
++...|..++
T Consensus 317 ~a~~~~~~~l 326 (338)
T 2if4_A 317 KQKEMYKGIF 326 (338)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 5666665444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00037 Score=69.50 Aligned_cols=173 Identities=8% Similarity=0.013 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCC----------hhHHHHHHHHHhcCCcccccccccccccccccccC
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKG----------VISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN 246 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (494)
-++|++.++.+.....+ +..+|+.--.++...|+ ++++++.++.+...++. +
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-----------------~ 106 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-----------------S 106 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-----------------C
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-----------------C
Confidence 67889999999986654 56778877777766666 89999999999887654 8
Q ss_pred HHHHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 247 VHTFNALMVGFYREG--AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEER-RMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 247 ~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
..+|+.-...+.+.| +++++++.++++.+.. +-|..+|+.-...+.+.| .++++.+.++++.+.. +-|..+|+..
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r 184 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHH
Confidence 899999888889999 7799999999999986 557888988888888888 8999999999998875 4588888888
Q ss_pred HHHHHcc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 324 IGGFCEI--------------GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDS 370 (494)
Q Consensus 324 i~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (494)
...+.+. +.++++++.+++..... +-|...|+-+-..+.+.++.++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 8777663 55789999999888765 5677888888887777776444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0011 Score=66.15 Aligned_cols=173 Identities=8% Similarity=-0.069 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCC----------HhHHHHHHHHHHHcCCC
Q 011081 210 KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGA----------FEKVEDVWVEMARLGCE 279 (494)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~ 279 (494)
...++|++.+++++..+|. +..+|+.--..+.+.|+ ++++++.++.+.+.. +
T Consensus 43 ~~~eeal~~~~~~l~~nP~-----------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-p 104 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-P 104 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred CCCHHHHHHHHHHHHHCch-----------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-C
Confidence 3456889999999887665 77888887777777777 899999999999876 4
Q ss_pred cCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 280 PDCYSYSVLMAVFCEER--RMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG-EMARAEEFFREMGLSGVESSSVTFE 356 (494)
Q Consensus 280 p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (494)
-+..+|+.-.-.+.+.+ +++++++.++.+.+.. +-|..+|+.-...+.+.| .++++++.++++.+.. +-|...|+
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~ 182 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWH 182 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHH
Confidence 57778888888888889 7799999999999876 558889998888888888 8999999999998876 66888898
Q ss_pred HHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 357 HLVNGYCRA--------------GDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 357 ~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
.....+.+. +.++++++.+++.+... +-|...|+.+-..+.+.++.
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 887777663 55789999999988865 33667777777767666653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0002 Score=56.76 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=81.5
Q ss_pred CCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHH
Q 011081 261 GAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE----IGEMARA 336 (494)
Q Consensus 261 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A 336 (494)
+++++|+++|++..+.| .++.. |...|...+..++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677888888887776 33332 6666667777778888888887765 67777777777777 6788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 382 (494)
.+.|++..+.| +...+..|...|.. .++.++|...|+...+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888887765 45666677777777 778888888888877776
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00029 Score=56.53 Aligned_cols=61 Identities=5% Similarity=-0.031 Sum_probs=39.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGLS-------GVESSSVTF----EHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.|+.+..++.+.|++++|+..|++..+. . +-+...| .....++...|++++|+..|+..++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666666666666666666666553 2 2344556 6677777777777777777777665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00034 Score=56.10 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC--------H-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD--------C-----YSYSVLMAVFCEERRMREAEKLWEEMRDK- 311 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 311 (494)
....+......+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..++..++.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3455677788899999999999999998876 343 2 38999999999999999999999998875
Q ss_pred ------CCCCCHhHH----HHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 312 ------NVEHDVVAY----NTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 312 ------g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
. +-+...| .....++...|++++|+..|++..+.
T Consensus 88 n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 88 NRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 3356678 89999999999999999999998653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=9.3e-05 Score=68.84 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=78.7
Q ss_pred hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 011081 196 VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMAR 275 (494)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 275 (494)
...+..+...+.+.|++++|...|++++...+ +... +...|+.+++...+ .
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p------------------~~~~-------~~~~~~~~~~~~~l---~- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG------------------DDFM-------FQLYGKYQDMALAV---K- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC------------------HHHH-------HTCCHHHHHHHHHH---H-
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc------------------cchh-------hhhcccHHHHHHHH---H-
Confidence 34466777888899999999999999866432 3221 12223333333222 1
Q ss_pred cCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 276 LGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 276 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
...|..+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++++|...|++..+.. +-+...+
T Consensus 230 ------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~ 301 (338)
T 2if4_A 230 ------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIR 301 (338)
T ss_dssp ------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 1366777778888888888888888877653 3467778888888888888888888888876653 2234444
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 011081 356 EHLVNG-YCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 356 ~~li~~-~~~~g~~~~a~~~~~~m~~~ 381 (494)
..+... ....+..+++..+|..|...
T Consensus 302 ~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 302 RELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 444444 23445667777788777654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=71.47 Aligned_cols=124 Identities=12% Similarity=-0.021 Sum_probs=70.4
Q ss_pred HHhcCCHhHHHHHHHHHHHcC---CCc----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHhHHHH
Q 011081 257 FYREGAFEKVEDVWVEMARLG---CEP----DCYSYSVLMAVFCEERRMREAEKLWEEMRDK-----NV-EH-DVVAYNT 322 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~-~~~~~~~ 322 (494)
+...|++++|+.++++.++.. +.+ ...+++.|...|...|++++|..++++.++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777776665431 111 1345667777777777777777777665431 21 11 2345666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLS-----GV-ESS-SVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
|...|...|++++|+.+|++..+. |- .|+ ..+.+.+-.++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766665431 21 111 22334444555566666666666666654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0024 Score=50.35 Aligned_cols=109 Identities=10% Similarity=0.033 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG 256 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 256 (494)
.++|++.|++..+.|. +.. . |...|...+.+++|.+.|++..+.+ +...+..|...
T Consensus 11 ~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------------------~~~a~~~Lg~~ 66 (138)
T 1klx_A 11 LKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN-------------------SGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC-------------------CHHHHHHHHHH
Confidence 6777777777777662 222 2 5556666666677777777765532 55666666666
Q ss_pred HHh----cCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011081 257 FYR----EGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 257 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 312 (494)
|.. .+++++|+++|++..+.| +...+..|...|.. .+++++|.++|+...+.|
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666 567777777777766654 44556666666666 566666666666666654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00034 Score=68.09 Aligned_cols=125 Identities=8% Similarity=-0.085 Sum_probs=74.3
Q ss_pred HHccCCHHHHHHHHHHHHhC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-hhhHHH
Q 011081 327 FCEIGEMARAEEFFREMGLS-----GV-ES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KGF-EPE-GSTIEV 392 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~ 392 (494)
+...|++++|+.++++.++. |- .| ...+++.|...|...|++++|..++++.++ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777665442 10 11 234567777777777777777777776654 121 222 345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 393 LIGELCDKRRVFEALDILKARVVK----FGL-FPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 393 li~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
|...|...|++++|..++++.+.- .|- .|+ ..+.+.+-.++...|.+++|..+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776654421 121 122 22344555666677777788777777765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=9.9e-05 Score=55.58 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 22334444444444444444444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=5.7e-05 Score=56.96 Aligned_cols=93 Identities=5% Similarity=0.016 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------Hh
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHD-------VV 318 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~ 318 (494)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 56788899999999999999999999998874 4467889999999999999999999999998873 44 44
Q ss_pred HHHHHHHHHHccCCHHHHHHHHH
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFR 341 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~ 341 (494)
.+..+..++...|+.+.|...|+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55566666666666555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00066 Score=51.50 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+...+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666666666666666666666655543 22344555555555566666666655555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00035 Score=53.12 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 301 AEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
|...|++..+.. +.+...|..+...|...|++++|+..|++..+.. +.+...|..+...|...|++++|...|+...+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555442 2345555566666666666666666666655543 33445555555566666666666666655544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0011 Score=47.48 Aligned_cols=63 Identities=11% Similarity=0.302 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444445555555555555555544432 22333444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0013 Score=47.05 Aligned_cols=84 Identities=12% Similarity=0.210 Sum_probs=69.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN 360 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (494)
+...+..+...+.+.|++++|...|++..+.. +.+..++..+..+|.+.|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34677888899999999999999999998764 4467889999999999999999999999998864 456777777777
Q ss_pred HHHhcC
Q 011081 361 GYCRAG 366 (494)
Q Consensus 361 ~~~~~g 366 (494)
.+...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00056 Score=54.74 Aligned_cols=108 Identities=9% Similarity=0.035 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCCh----------hHHHHHHHHHhcCCcccccccccccccccccccC
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGV----------ISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN 246 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (494)
+++|++.++...+.... +...|+.+..++...+++ ++|...|++.++.+|. +
T Consensus 18 feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-----------------~ 79 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-----------------K 79 (158)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----------------C
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-----------------c
Confidence 89999999999987654 788888888888887764 5999999999887654 7
Q ss_pred HHHHHHHHHHHHhcC-----------CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 247 VHTFNALMVGFYREG-----------AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 247 ~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
..+|..+..+|...| ++++|++.|++..+. .|+...|...+... ++|-+++-.+..
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~------~ka~el~~~~~~ 146 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYK 146 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH------HhCHhccCcccc
Confidence 889999999998875 789999999988876 67766665555443 334444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00053 Score=54.90 Aligned_cols=98 Identities=7% Similarity=-0.008 Sum_probs=69.4
Q ss_pred cCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHh----------HHHHHHHHHHHcC
Q 011081 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFE----------KVEDVWVEMARLG 277 (494)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----------~a~~~~~~m~~~g 277 (494)
+.+.+++|.+.++...+.+|. +...|+.+..++.+.++++ +|+..|++.++..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-----------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld 76 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC
Confidence 445678999999999887654 8899999999999888765 7777777777764
Q ss_pred CCcCHhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 278 CEPDCYSYSVLMAVFCEER-----------RMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+-+..+|..+..+|...| ++++|.+.|++..+. .|+...|..-+.
T Consensus 77 -P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 77 -PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 335567777777777664 677777777776665 455444433333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0018 Score=47.69 Aligned_cols=64 Identities=22% Similarity=0.196 Sum_probs=36.7
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 316 DVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
+...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555556666666666666666666655543 33444555566666666666666666655543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.002 Score=47.49 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=42.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666667777777777777777766653 33455666777777777777777777766553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.023 Score=52.21 Aligned_cols=155 Identities=6% Similarity=-0.072 Sum_probs=80.7
Q ss_pred cCCChhhHHHHHHHHH--hcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccc
Q 011081 154 CGSAPFVFDLLIKCCL--EVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA 231 (494)
Q Consensus 154 ~~~~~~~~~~li~~~~--~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 231 (494)
...++.+|...+++.. ..++.+...+|+++|++.++..+. ....|..+..+|.- .... .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~----------~~~~-~------- 250 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIV----------RHSQ-H------- 250 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH----------HHHH-S-------
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH----------Hhcc-C-------
Confidence 4456788888886654 344555578999999999985433 34555544444430 0000 0
Q ss_pred ccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011081 232 GIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK 311 (494)
Q Consensus 232 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 311 (494)
..+...... ...+.+-...+ .. -+.+..+|..+...+...|++++|...+++....
T Consensus 251 ------------~~~~~~~~~----------l~~a~~a~~a~-~~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L 306 (372)
T 3ly7_A 251 ------------PLDEKQLAA----------LNTEIDNIVTL-PE-LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL 306 (372)
T ss_dssp ------------CCCHHHHHH----------HHHHHHHHHTC-GG-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------CCchhhHHH----------HHHHHHHHHhc-cc-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 000000000 01122211111 11 1345555555555555556666666666666665
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011081 312 NVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTF 355 (494)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 355 (494)
+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 307 n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 307 E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 3 55555555666666666666666666666554 3444444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.039 Score=57.66 Aligned_cols=76 Identities=8% Similarity=0.014 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
..++..+.+.|.+++|+++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 566666666677776665552111 1122345567777776664332 2556677777777777
Q ss_pred CCHHHHHHHHHHHH
Q 011081 331 GEMARAEEFFREMG 344 (494)
Q Consensus 331 g~~~~A~~~~~~m~ 344 (494)
|+++.|++.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 77777777776653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.014 Score=53.77 Aligned_cols=153 Identities=10% Similarity=-0.032 Sum_probs=101.9
Q ss_pred CCcChHhHHHHHHHHHc--C---CChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHH
Q 011081 192 LSVKVSTCNALIWEVSR--G---KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKV 266 (494)
Q Consensus 192 ~~~~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 266 (494)
.+.+...|...+++... . ....+|..+|+++++.+|. ....|..+.-+|.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-----------------~a~A~A~la~a~~-------- 244 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-----------------FTYARAEKALVDI-------- 244 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHH--------
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHH--------
Confidence 34577788887766432 2 2357899999999887665 5566665555554
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 267 EDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 267 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.. ...+ ..+...... ...+.+....+ .. .+.+..+|.++...+...|++++|...++++...
T Consensus 245 --~~---~~~~-~~~~~~~~~----------l~~a~~a~~a~-~~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L 306 (372)
T 3ly7_A 245 --VR---HSQH-PLDEKQLAA----------LNTEIDNIVTL-PE-LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL 306 (372)
T ss_dssp --HH---HHHS-CCCHHHHHH----------HHHHHHHHHTC-GG-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HH---hccC-CCchhhHHH----------HHHHHHHHHhc-cc-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11 1111 011111011 12222211111 11 2567888888888888889999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 011081 347 GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIE 391 (494)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 391 (494)
+ |+...|..+...+...|++++|.+.|++.... .|...+|.
T Consensus 307 n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 307 E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5 78888888889999999999999999999886 45666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0045 Score=59.17 Aligned_cols=63 Identities=6% Similarity=-0.053 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLS-----G-VES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.+++.|..+|...|++++|+.++++..+. | -.| ...+++.|...|...|++++|+.+|++.++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45566666666666666666666655431 2 112 224456666666666666666666665544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0095 Score=56.95 Aligned_cols=92 Identities=7% Similarity=0.014 Sum_probs=57.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCC-CHHH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDKN---VEH----DVVAYNTIIGGFCEIGEMARAEEFFREMGLS-----G-VES-SSVT 354 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~~-~~~~ 354 (494)
+..+.+.|++++|+.++++..+.. +.+ ...+++.+...|...|++++|+.++++..+. | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556677777777777665421 112 2346777777777777777777777765432 2 112 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 355 FEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
++.|...|...|++++|+.++++.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777777777777777777776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.13 Score=53.63 Aligned_cols=154 Identities=10% Similarity=0.102 Sum_probs=96.9
Q ss_pred HHHHhcCChhcHHHHHH-HHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccc
Q 011081 166 KCCLEVKNIEKIETCVD-IVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVR 244 (494)
Q Consensus 166 ~~~~~~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
......++ +++|.+ ++.. ++ +......++..+.+.|..+.|+++.+..
T Consensus 607 ~~~~~~~~---~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~---------------------- 655 (814)
T 3mkq_A 607 QTLTLRGE---IEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ---------------------- 655 (814)
T ss_dssp HHHHHTTC---HHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH----------------------
T ss_pred hHHHHhCC---HHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc----------------------
Confidence 33445677 788776 4421 11 1223367778888888888888654211
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
. .-.....+.|++++|.++.+.+ .+...|..+...+.+.++++.|++.|..+.. |..+.
T Consensus 656 -~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~ 714 (814)
T 3mkq_A 656 -D-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLF 714 (814)
T ss_dssp -H-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHH
T ss_pred -c-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhH
Confidence 1 1123456789999999986543 3678999999999999999999999998753 34555
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 325 GGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYND 377 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (494)
..|...|+.+...++-+.....|. ++....+|.+.|++++|.+++.+
T Consensus 715 ~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 715 LLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 556667777666555555444431 23333344455555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0045 Score=59.13 Aligned_cols=85 Identities=9% Similarity=-0.102 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-hhhHHHHHHH
Q 011081 331 GEMARAEEFFREMGLS---GVES----SSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KGF-EPE-GSTIEVLIGE 396 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~li~~ 396 (494)
|++++|+.++++..+. -+.| ...+++.|...|...|++++|+.++++.++ .|. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6788888888876542 1112 246788899999999999999999988765 232 333 4568888999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 011081 397 LCDKRRVFEALDILKARVV 415 (494)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~ 415 (494)
|...|++++|..++++.+.
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0056 Score=44.63 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=21.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 292 FCEERRMREAEKLWEEMRDKNVEHDVV-AYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
+.+.|++++|...|+...+.. +.+.. .|..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444443331 11233 444444444444444444444444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0073 Score=57.77 Aligned_cols=87 Identities=8% Similarity=0.003 Sum_probs=63.3
Q ss_pred ccCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-hhhHHHHH
Q 011081 329 EIGEMARAEEFFREMGLSG---VES----SSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KG-FEPE-GSTIEVLI 394 (494)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~p~-~~~~~~li 394 (494)
+.|++++|+.++++..+.. +.| ...+++.+...|...|++++|+.++++.++ .| -.|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 5678888888888886531 122 245778888888889999999888887765 22 1233 45678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011081 395 GELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~ 415 (494)
..|...|++++|+.++++.+.
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 888899999998888886553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0091 Score=43.43 Aligned_cols=81 Identities=9% Similarity=0.085 Sum_probs=60.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDCY-SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIG 331 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (494)
....+.+.|++++|+..|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+.. +.+..++.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 4567788999999999999998874 33566 88899999999999999999999998874 223333311 4
Q ss_pred CHHHHHHHHHHH
Q 011081 332 EMARAEEFFREM 343 (494)
Q Consensus 332 ~~~~A~~~~~~m 343 (494)
.+.++...|++.
T Consensus 76 ~~~~a~~~~~~~ 87 (99)
T 2kc7_A 76 MVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.22 Score=37.94 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=98.5
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEAL 407 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 407 (494)
.-.|..++..++..+.... .+..-||.+|--....-+-+-..++++..-+. .|. ...|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3467788888888887753 35566777776666666666566666555332 222 2355555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 408 DILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 408 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
..+-. + ..+...+...++.+...|+-+.-.+++..+.. .-+|++...-.+..||.+.|+..+|.+++++.-++
T Consensus 82 ~C~~~-~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 82 ECGVI-N-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHH-T-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHH-h-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 55431 1 13555677788888999999999999999654 35788888889999999999999999999999998
Q ss_pred ccc
Q 011081 488 QVR 490 (494)
Q Consensus 488 ~~~ 490 (494)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.044 Score=43.25 Aligned_cols=85 Identities=16% Similarity=0.081 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 011081 368 VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKR---RVFEALDILKARVVKFGLFP--TEKSYMFLIKGLCEEGKMEEA 442 (494)
Q Consensus 368 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 442 (494)
...+.+-|.+..+.|. ++..+...+..++++.+ ++++++.++++.++.. .| +...+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 4455555665555553 45556556666666666 4556777776555542 12 123333445556677777777
Q ss_pred HHHHHHHHhCCCCCC
Q 011081 443 LKVQAEMVGKGFEPS 457 (494)
Q Consensus 443 ~~~~~~m~~~~~~p~ 457 (494)
.+.++.+++. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 7777777643 554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.29 Score=43.16 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhCCCCCC---HhHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 011081 298 MREAEKLWEEMRDKNVEHD---VVAYNTIIGGFCE-----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA-GDV 368 (494)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 368 (494)
...|...+++..+. .|+ ...|..+...|.+ .|+.++|.+.|++..+.+-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35666667776665 344 5678888888887 488888888888888764212366677777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CChhhHHH
Q 011081 369 DSAILVYNDMCRKGFE--PEGSTIEV 392 (494)
Q Consensus 369 ~~a~~~~~~m~~~~~~--p~~~~~~~ 392 (494)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888887665 55444433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.07 Score=38.38 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=33.4
Q ss_pred ChHhHHHHHHHHHcCCC---hhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011081 195 KVSTCNALIWEVSRGKG---VISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWV 271 (494)
Q Consensus 195 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (494)
++..+..+..++...++ .++|..++++.+..++. +..+...+...+.+.|++++|+..|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-----------------~~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-----------------NEAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444444432222 45555555555554433 45555555555555666666666665
Q ss_pred HHHHc
Q 011081 272 EMARL 276 (494)
Q Consensus 272 ~m~~~ 276 (494)
++.+.
T Consensus 68 ~~l~~ 72 (93)
T 3bee_A 68 LLLDS 72 (93)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 55554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.13 Score=37.00 Aligned_cols=67 Identities=4% Similarity=-0.058 Sum_probs=39.4
Q ss_pred CCHhHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 315 HDVVAYNTIIGGFCEIGE---MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 315 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
.|...+..+..++...++ .++|..+|++..+.+ +-+......+...+.+.|++++|...|+.+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345555555555543333 466666666666654 4455566666666666666666666666666553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.84 Score=36.96 Aligned_cols=129 Identities=9% Similarity=0.062 Sum_probs=79.0
Q ss_pred HHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh
Q 011081 204 WEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY 283 (494)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 283 (494)
......|+++.|.++.+++ -+...|..|.....+.|+++-|++.|....+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l----------------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------- 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL----------------------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------- 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------
T ss_pred HHHHhcCCHHHHHHHHHHh----------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------
Confidence 3445677888887776665 1567788888888888888888888876642
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
+..+.-.|.-.|+.++-.++-+.....| -++.-...+.-.|+++++.++|.+... -| -......
T Consensus 63 -~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~ 126 (177)
T 3mkq_B 63 -FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAK 126 (177)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHH
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHH
Confidence 2344555666777776666555555444 245555566667788887777754421 11 1111222
Q ss_pred hcCCHHHHHHHHHHH
Q 011081 364 RAGDVDSAILVYNDM 378 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m 378 (494)
..|..+.|.++.+++
T Consensus 127 t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 127 ANGDEAAASAFLEQA 141 (177)
T ss_dssp HTTCHHHHHHHHHHT
T ss_pred HcCcHHHHHHHHHHh
Confidence 345666677776654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.15 Score=37.41 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKN------VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
..|...+.+.|+++.|..+|+...+.- -.....++..+..+|.+.|+++.|..++++..+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344444444444444444444433210 012233444444444445555555544444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.11 Score=38.20 Aligned_cols=71 Identities=8% Similarity=0.128 Sum_probs=53.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 386 EGSTIEVLIGELCDKRRVFEALDILKARVVKF-----GLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSL 458 (494)
Q Consensus 386 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (494)
+..-+..+...+.+.+++..|...|+..+... .-.+....+..+..++.+.|++++|..++++..+. .|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 44456677888888999999999998777643 11245667888888999999999999999988864 5553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.64 Score=35.51 Aligned_cols=132 Identities=11% Similarity=0.080 Sum_probs=64.4
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011081 258 YREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAE 337 (494)
Q Consensus 258 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 337 (494)
.-.|..++..++..+..... +..-||-+|.-....-+-+...++++.+-+. .|. ..+|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 34577888888888877642 5566666666666666666666666555332 111 1123333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 338 EFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
..+-.+ ..+.......++.....|.-++-.+++.++... .+|+......+..+|.+.|+..+|.+++.
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 332222 112233333444444445555554554443322 23444444444455555555555555444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.086 Score=41.10 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHC
Q 011081 349 ESSSVTFEHLVNGYCRAGDV------DSAILVYNDMCRK 381 (494)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~ 381 (494)
+-|..+|-..+....+.|+. ++..++|++....
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 44566666666666666776 6666666666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.24 Score=39.01 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCC---ChhHHHHHHHHHhcCC-cccccccccccccccccccCHHHHHH
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGK---GVISGYEIYREVFGLD-SDATAGIGKDVKRVVRVRPNVHTFNA 252 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (494)
+..+.+-|.+..+.|. ++..+.-.+..++++.+ +++++..+|++..+.+ |. -+...+-.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~----------------~~rd~lY~ 76 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE----------------EQRDYVFY 76 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc----------------chHHHHHH
Confidence 5566666666666665 58888888888999988 6679999999887643 21 13556666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDC 282 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 282 (494)
+.-+|.+.|++++|.++++.+.+. .|+.
T Consensus 77 LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 77 LAVGNYRLKEYEKALKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 777889999999999999999886 5644
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.97 Score=36.60 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=54.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011081 292 FCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSA 371 (494)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 371 (494)
....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666665544 1455666666666666666666666665532 23344445555665555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011081 372 ILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILK 411 (494)
Q Consensus 372 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 411 (494)
..+-+.....| -++.....+...|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 54444444443 13334444455666666666654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.49 E-value=3.5 Score=39.35 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=137.6
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHhHHHHHHHHH----HhcCCHHHHH--HHHHHHHh--CC-
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEPDCYSYSVLMAVF----CEERRMREAE--KLWEEMRD--KN- 312 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~----~~~g~~~~a~--~~~~~m~~--~g- 312 (494)
..-+......++..|.+.|+++...+.+..+... |..+.. ...+++.+ ......+... .+.+.... .|
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 3456777888999999999999988877766543 433332 23333333 3334333222 22221111 11
Q ss_pred CCC---CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 011081 313 VEH---DVVAYNTIIGGFCEIGEMARAEEFFREMGLS--GVESS---SVTFEHLVNGYCRAGDVDSAILVYNDMCR---- 380 (494)
Q Consensus 313 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~---- 380 (494)
+-. .......|...|...|++.+|.+++.++... |.... ...+...+..|...+++..|..+++.+..
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 111 1223456888999999999999999998643 22111 24567778889999999999999988743
Q ss_pred CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCC
Q 011081 381 KGFEPE--GSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIK----GLCEEGKMEEALKVQAEMVGKGF 454 (494)
Q Consensus 381 ~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~ 454 (494)
....|+ ...+...+..+...+++.+|...|.+........-+...+..++. +..-.+....-..+.........
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~ 289 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNN 289 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSS
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccc
Confidence 222232 234566777788899999999998876654433334433322211 11112211222222333222222
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 011081 455 EPSLEIYSAFIDGYMKE--GNVEMATMLRK 482 (494)
Q Consensus 455 ~p~~~~~~~li~~~~~~--g~~~~a~~~~~ 482 (494)
.++...|..++.+|... .+++...+.++
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 45677888888888654 34555555443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.53 Score=41.52 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=81.9
Q ss_pred CHHHHHHHHH-HHHhc--CC------HhHHHHHHHHHHHcCCCcC---HhHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 011081 246 NVHTFNALMV-GFYRE--GA------FEKVEDVWVEMARLGCEPD---CYSYSVLMAVFCEE-----RRMREAEKLWEEM 308 (494)
Q Consensus 246 ~~~~~~~li~-~~~~~--g~------~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m 308 (494)
....|..++. .+... |+ ...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 4555666654 33332 33 45677777777765 455 56899999999994 9999999999999
Q ss_pred HhCCCCCCHhHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 011081 309 RDKNVEHDVVAYNTIIGGFCEI-GEMARAEEFFREMGLSGVE--SSSVTFEHL 358 (494)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~--~~~~~~~~l 358 (494)
++.+..-+..++......++.. |+.+++.+.+++....... |+....+.+
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9874323488899999999985 9999999999999987655 665444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.33 Score=36.78 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 421 PTEKSYMFLIKGLCEEGKMEE---ALKVQAEMVGKGFEP--SLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 421 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
++..+--.+.+++.+..+... ++.+++...+.+ .| .....-.|.-++.+.|++++|+++++.+++..|
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 444444445555555444333 555555555432 12 122233334455555555555555555555443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.43 E-value=1.9 Score=33.34 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=10.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 011081 431 KGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~ 451 (494)
-++.+.|++++|.++.+.+++
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344455555555555555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.86 E-value=1.1 Score=34.22 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=11.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 011081 429 LIKGLCEEGKMEEALKVQAEMV 450 (494)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~ 450 (494)
+.-++.+.|++++|.+..+.++
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3344445555555555555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.73 E-value=1.3 Score=34.52 Aligned_cols=100 Identities=10% Similarity=0.151 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHHcCCCcCHh-HHHHHHHH------HHhcCCHHHHHHHHHHHHhCC
Q 011081 246 NVHTFNALMVGFYREGAF------EKVEDVWVEMARLGCEPDCY-SYSVLMAV------FCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~-~~~~li~~------~~~~g~~~~a~~~~~~m~~~g 312 (494)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...|.. +...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 677787778777777887 7777788777664 355421 11111111 112355666666666654432
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 313 VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
-.- ...|-....--.+.|++..|.+++......+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 111 4445444454555566666666665555554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.84 E-value=1.5 Score=33.15 Aligned_cols=86 Identities=9% Similarity=0.010 Sum_probs=42.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCH
Q 011081 294 EERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR---AEEFFREMGLSGVES--SSVTFEHLVNGYCRAGDV 368 (494)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~ 368 (494)
....+..+.+-|......| .++..+--.+..++++..+... ++.+++++...+ .| .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 3334444555555444433 2455555555555555554443 555555555443 12 222233344455555666
Q ss_pred HHHHHHHHHHHHC
Q 011081 369 DSAILVYNDMCRK 381 (494)
Q Consensus 369 ~~a~~~~~~m~~~ 381 (494)
++|.+.++.+++.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666665555553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.78 E-value=9.2 Score=36.41 Aligned_cols=190 Identities=9% Similarity=0.023 Sum_probs=106.5
Q ss_pred cCCHhHHHHHHHHHHHc-----CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHH----Hc
Q 011081 260 EGAFEKVEDVWVEMARL-----GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK-NVEHDVVAYNTIIGGF----CE 329 (494)
Q Consensus 260 ~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~----~~ 329 (494)
.|++++|++.+..+.+. ...........++..|.+.|+++...+.+..+.+. |..+. ....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 36788888877766543 23334566778889999999999988887776543 32222 223333322 22
Q ss_pred cCCHHHHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC---hhhHHHHHHH
Q 011081 330 IGEMARAE--EFFREMGL--SG-VES---SSVTFEHLVNGYCRAGDVDSAILVYNDMCR--KGFEPE---GSTIEVLIGE 396 (494)
Q Consensus 330 ~g~~~~A~--~~~~~m~~--~~-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~---~~~~~~li~~ 396 (494)
....+... .+.+.... .| +.. .......|...|...|++.+|..++.++.. .|.... ...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33222211 11111111 11 111 112235567777788888888888887754 232211 2345556677
Q ss_pred HHhcCCHHHHHHHHHHHHH---hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 397 LCDKRRVFEALDILKARVV---KFGLFPT--EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 397 ~~~~~~~~~a~~~~~~~~~---~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
|...+++.+|..++.+.-. .....|+ ...|...+..+...+++.+|.+.|.+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7778888888777764321 1111222 12456666667777777777777666653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.04 E-value=1.4 Score=44.86 Aligned_cols=50 Identities=24% Similarity=0.205 Sum_probs=27.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 433 LCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDGYMKEGNVEMATMLRKEM 484 (494)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 484 (494)
|...|+++.|+++-++.... .| +-.+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33455555555555555533 33 3555555555555555555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=1.2 Score=41.76 Aligned_cols=55 Identities=9% Similarity=0.010 Sum_probs=28.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREM 343 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 343 (494)
++..+...|++++|...+..+.... +.+...|..+|.+|.+.|+..+|++.|++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555544432 334455555555555555555555555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.53 E-value=6.7 Score=42.58 Aligned_cols=146 Identities=11% Similarity=0.098 Sum_probs=94.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---------------
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NV--------------- 313 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--------------- 313 (494)
++..+.+.+..+-+.++.... +.+...--.+..+|...|++++|.+.|++.-.. +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444555566666555544332 224444455677888899999999999764211 00
Q ss_pred ---CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011081 314 ---EHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESS----SVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE 386 (494)
Q Consensus 314 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 386 (494)
..-..-|.-++..+.+.|.++.+.++-+...+....-+ ...|..+..++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 00113367788888888999888888776655421212 125788889999999999999988887665443
Q ss_pred hhhHHHHHHHHHhcCCHHH
Q 011081 387 GSTIEVLIGELCDKRRVFE 405 (494)
Q Consensus 387 ~~~~~~li~~~~~~~~~~~ 405 (494)
...+..++..+|..|..+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHhCCChhh
Confidence 4566777777776666544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.17 E-value=3.9 Score=41.62 Aligned_cols=126 Identities=12% Similarity=0.073 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCC-HhHHHHHHHHHHHcCCCcCHhHH--HHHHHHHHhcCC-HHHHHHHHHHHHhC------CCCC-CHh
Q 011081 250 FNALMVGFYREGA-FEKVEDVWVEMARLGCEPDCYSY--SVLMAVFCEERR-MREAEKLWEEMRDK------NVEH-DVV 318 (494)
Q Consensus 250 ~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~~-~~~ 318 (494)
-..++..+...|+ .+.|..+|+++.+. .|...++ ..++..+.+.++ --+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3455555555666 57899999999886 3433332 233333333332 22344444443321 1111 111
Q ss_pred ----------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011081 319 ----------AYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDM 378 (494)
Q Consensus 319 ----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 378 (494)
..+.=.+-+...|+++.|+++-++....- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222344567899999999999988763 556889999999999999999999998887
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=1.5 Score=41.04 Aligned_cols=72 Identities=8% Similarity=-0.014 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRD-----KNVEHDVVAY 320 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~ 320 (494)
.+...++..+...|+++++...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+ .|+.|...+-
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345667788889999999999999988764 56888999999999999999999999998754 4888877653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.68 E-value=0.0028 Score=59.66 Aligned_cols=121 Identities=10% Similarity=0.015 Sum_probs=61.6
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 315 HDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
.++.||..+-.+|...+.+.-|.-.--.+.- .+| -...++..|-..|.+++.+.+++.-+... ......|+.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 3666777777777777776655444333321 111 12235556677777777777777655321 33555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHH
Q 011081 395 GELCDKRRVFEALDILKARVVKFGLFP------TEKSYMFLIKGLCEEGKMEEA 442 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A 442 (494)
-.|++- +.++..+.++-...+-+++. ....|.-++-.|++-.+++.|
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 666544 33444333331111111111 122355555566665666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.57 E-value=26 Score=36.63 Aligned_cols=152 Identities=12% Similarity=0.109 Sum_probs=80.7
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH---HHHHHHHcc
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMA--VFCEERRMREAEKLWEEMRDKNVEHDVVAYN---TIIGGFCEI 330 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~li~~~~~~ 330 (494)
.+.-.|+-+....++..+.+.. +..+...+.- ++.-.|+.+.+..+.+.+.... . ...-|. ++.-+|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-d-p~vRygaa~alglAyaGT 573 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-E-SLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-C-HHHHHHHHHHHHHHTTTS
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHHhcCC
Confidence 3445566666666766665431 2233333333 3345677777777777776541 1 222232 234456677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHH
Q 011081 331 GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV-FEALDI 409 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~ 409 (494)
|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++++.
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 78766666777776532 2233333333334445666666677776665544 44444444444444444443 566777
Q ss_pred HHHHH
Q 011081 410 LKARV 414 (494)
Q Consensus 410 ~~~~~ 414 (494)
+....
T Consensus 652 L~~L~ 656 (963)
T 4ady_A 652 LDPLT 656 (963)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.23 E-value=8.3 Score=41.84 Aligned_cols=148 Identities=10% Similarity=0.070 Sum_probs=91.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFE----------------- 384 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------------- 384 (494)
.++..+.+.+..+.+.++.... +.+...--.+..+|...|++++|.+.|.+... |+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 3445555666666655544332 23334444556677788888888888866421 110
Q ss_pred ------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011081 385 ------PEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPT---EKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFE 455 (494)
Q Consensus 385 ------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (494)
.-..-|..++..+.+.+.++.+.++-...+...+-..+ ...|..+.+++...|++++|...+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 01123667777788888888888877766654432221 12577788888888888888888877765533
Q ss_pred CCHHHHHHHHHHHHhcCCHHHH
Q 011081 456 PSLEIYSAFIDGYMKEGNVEMA 477 (494)
Q Consensus 456 p~~~~~~~li~~~~~~g~~~~a 477 (494)
-......|+...|..|..+.-
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhh
Confidence 356677777777766655443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.60 E-value=18 Score=33.64 Aligned_cols=168 Identities=8% Similarity=-0.031 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCc---CHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHhHH-
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARL-GCEP---DCYSYSVLMAVFCEE-RRMREAEKLWEEMRDKNVEHDVVAY- 320 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~- 320 (494)
..+...|...|.+.|+.++..+++.....- +.-+ .......+++.+... +..+.-.++..+..+..- .+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345667778888888888888877766432 1111 222345666666553 333333333333322100 011122
Q ss_pred -----HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChh
Q 011081 321 -----NTIIGGFCEIGEMARAEEFFREMGLSGVESS-----SVTFEHLVNGYCRAGDVDSAILVYNDMCRK--GFEPEGS 388 (494)
Q Consensus 321 -----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~ 388 (494)
.-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.++..
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2467777788888888777777765311111 233455566677778887777777766442 1212222
Q ss_pred hHH--HHH--HHHH-hcCCHHHHHHHHHHHHH
Q 011081 389 TIE--VLI--GELC-DKRRVFEALDILKARVV 415 (494)
Q Consensus 389 ~~~--~li--~~~~-~~~~~~~a~~~~~~~~~ 415 (494)
+.. -.. ..+. ..+++..|...|-+...
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 211 111 2234 56777777777765543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.85 E-value=20 Score=33.35 Aligned_cols=242 Identities=7% Similarity=-0.009 Sum_probs=123.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHcC
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYRE-GAFEKVEDVWVEMARLG 277 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g 277 (494)
...|...|.+.|+.++..+++......-.. ..-.........++..+... +..+.-.++..+..+..
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a 89 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSS------------ISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA 89 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGG------------SCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------hchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345666666666666666666555322110 00111334455555555543 23333344444433321
Q ss_pred CCcCHhHH------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011081 278 CEPDCYSY------SVLMAVFCEERRMREAEKLWEEMRDKNVEHD-----VVAYNTIIGGFCEIGEMARAEEFFREMGLS 346 (494)
Q Consensus 278 ~~p~~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 346 (494)
.-+..+| .-++..|...|++.+|.+++..+.+.--..| ..+|-.-+..|...+++.++...+......
T Consensus 90 -~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 90 -KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp -HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 1112233 2578888899999999888888765311111 344666778888889999888888876543
Q ss_pred --CCCCCHHHHHHH----HHHHH-hcCCHHHHHHHHHHHHH----CCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 347 --GVESSSVTFEHL----VNGYC-RAGDVDSAILVYNDMCR----KGFEP---EGSTIEVLIGELCDKRRVFEALDILKA 412 (494)
Q Consensus 347 --~~~~~~~~~~~l----i~~~~-~~g~~~~a~~~~~~m~~----~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~ 412 (494)
.+.+++..-..+ ...+. ..+++.+|...|-+..+ .| .| +...|..+.. ... ++..+.-.++..
T Consensus 169 ~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~a-Ll~-~~r~el~~~l~~ 245 (394)
T 3txn_A 169 ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCK-IML-GQSDDVNQLVSG 245 (394)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHH-HHT-TCGGGHHHHHHS
T ss_pred hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHH-HHc-CCHHHHHHHhcc
Confidence 222333322211 22345 67888888887766542 11 11 1222322222 222 222222222221
Q ss_pred H-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 011081 413 R-VVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLE 459 (494)
Q Consensus 413 ~-~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 459 (494)
. .... ..|....+..++.+| +.+++.+..+++..... .+..|..
T Consensus 246 ~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 246 KLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred cccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 1 1222 345666666666665 45677777666665533 2444543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.40 E-value=8.1 Score=27.71 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 402 RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
+.-+..+-+. .+-...+.|++....+.+.+|-|.+++..|.++|+-.+.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN-~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMN-TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHH-HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHH-HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 4455555555 4555677888888888889998888999999988888764 3334456776665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.52 E-value=10 Score=27.20 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=43.1
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
+.=+..+-++.+....+.|+.....+.+++|.+.+++..|.++++.++.+- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344566667777777778888888888888888888888888888776542 222345655544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.43 E-value=7.6 Score=29.53 Aligned_cols=66 Identities=8% Similarity=-0.025 Sum_probs=49.3
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcc
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSD 228 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (494)
....++++........+++.+++.+.+.+..-....+-.|.-++.+.|+++.|++..+.+++..|.
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344556666665568899999999988763323444555667899999999999999999887654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.79 E-value=10 Score=30.15 Aligned_cols=69 Identities=12% Similarity=0.102 Sum_probs=43.7
Q ss_pred ccccCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHcC-CCcCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 242 RVRPNVHTFN--ALMVGFYREGAFEKVEDVWVEMARLG-CEPDC-------YSYSVLMAVFCEERRMREAEKLWEEMRD 310 (494)
Q Consensus 242 ~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 310 (494)
|..|....|+ .-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++..|...|++.++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445444443 34677788899999988887765431 12332 2566778889999999999999998643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.58 E-value=16 Score=28.14 Aligned_cols=72 Identities=7% Similarity=-0.084 Sum_probs=51.6
Q ss_pred ChhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcc
Q 011081 157 APFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSD 228 (494)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (494)
++.+--....++.+........+++.+++.+.+.+..-.....-.|.-++.+.|++++|++..+.+++..|.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 333433445566677766668899999999988654323333445566899999999999999999887654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=81.23 E-value=0.21 Score=47.37 Aligned_cols=228 Identities=11% Similarity=0.084 Sum_probs=141.5
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHH
Q 011081 104 SLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDI 183 (494)
Q Consensus 104 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~ 183 (494)
|+..|..+|.+..+.|.+++-...+..+. +...++.+=+.|+-+|++.++ +.+-.+.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaR--------------------k~~ke~~IDteLi~ayAk~~r---L~elEef 138 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMAR--------------------KKARESYVETELIFALAKTNR---LAELEEF 138 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTS--------------------TTCCSTTTTHHHHHHHHTSCS---SSTTTST
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH--------------------HHhcccccHHHHHHHHHhhCc---HHHHHHH
Confidence 45578888898888888887776665332 234455666788888888888 3332222
Q ss_pred HHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccc--------ccccccccccccccCHHHHHHHHH
Q 011081 184 VRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATA--------GIGKDVKRVVRVRPNVHTFNALMV 255 (494)
Q Consensus 184 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~li~ 255 (494)
=-.||..-...+.+-|...|.++.|.-+|..+..-..-..+ +..+.++| .-+..||-.+-.
T Consensus 139 -------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK----Ans~ktWKeV~~ 207 (624)
T 3lvg_A 139 -------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK----ANSTRTWKEVCF 207 (624)
T ss_dssp -------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT----CCSSCSHHHHTH
T ss_pred -------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHH
Confidence 13467777788888888889998888887766432221110 11112222 346778988889
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011081 256 GFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 256 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (494)
+|...+++.-|.-.--.+.-. +| -...++..|-+.|.+++-+.+++.-.... ......|+-|.-.|++- ++++
T Consensus 208 ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 208 ACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHH
Confidence 999999888776655444422 11 22346677788888888888887766322 34667788887777775 4555
Q ss_pred HHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 011081 336 AEEFFREMGLS-GVES------SSVTFEHLVNGYCRAGDVDSAI 372 (494)
Q Consensus 336 A~~~~~~m~~~-~~~~------~~~~~~~li~~~~~~g~~~~a~ 372 (494)
..+.++....+ +++. ....|.-++-.|.+-.+++.|.
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 55554433222 2211 1234666666666666666553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.57 E-value=13 Score=29.64 Aligned_cols=59 Identities=5% Similarity=-0.028 Sum_probs=29.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 322 TIIGGFCEIGEMARAEEFFREMGLS-GVESSS-------VTFEHLVNGYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 322 ~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 380 (494)
.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455555566666666555544322 112221 1334455556666666666666665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.24 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.97 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.64 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.54 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.39 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.36 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.18 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.17 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.16 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.12 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.05 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.99 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.87 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.77 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.77 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.73 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.64 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.47 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.46 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.45 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.44 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.24 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.13 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.7 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.52 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.11 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.08 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.4 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.67 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.76 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.3e-18 Score=162.53 Aligned_cols=359 Identities=15% Similarity=0.069 Sum_probs=244.7
Q ss_pred hccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhh
Q 011081 81 LKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFV 160 (494)
Q Consensus 81 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (494)
..|+++.|++.|..+.... +-+..++..+..++.+.|++++|...++.+++. .+.++.+
T Consensus 11 ~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------~p~~~~a 69 (388)
T d1w3ba_ 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-------------------NPLLAEA 69 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCCHHH
Confidence 3577888888888876543 345677888888888888888888888887652 2234567
Q ss_pred HHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccc
Q 011081 161 FDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRV 240 (494)
Q Consensus 161 ~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
+..+..++.+.|+ +++|++.+....+.... +..............+....+...........
T Consensus 70 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 131 (388)
T d1w3ba_ 70 YSNLGNVYKERGQ---LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------------- 131 (388)
T ss_dssp HHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHhhhhcc---ccccccccccccccccc-cccccccccccccccccccccccccccccccc--------------
Confidence 7777888888888 88888888888775543 33444444444444444444444444332221
Q ss_pred cccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011081 241 VRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAY 320 (494)
Q Consensus 241 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 320 (494)
.................+....+...+....... +-+...+..+...+...|++++|...++...+.. +-+..+|
T Consensus 132 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T d1w3ba_ 132 ---PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp ---TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ---cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHH
Confidence 2234444555556666677777777776666553 3345666777777777788888888877776653 3356677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 011081 321 NTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDK 400 (494)
Q Consensus 321 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 400 (494)
..+...+...|++++|...|++....+ +.+...+..+...+.+.|++++|...|++.++.. +-+..++..+...+...
T Consensus 207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 207 INLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 777777888888888888887777654 4556667777777777888888888888777654 23456677777777778
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 011081 401 RRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 401 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
|++++|++.++...... +.+...+..+...+.+.|++++|.+.|++.++. .| +..+|..+..+|.+.|++++|.+
T Consensus 285 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 285 GSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp SCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCHHHHHHHHHhhhccC--CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888777555543 345566777777777788888888888877753 34 46667777777788888888888
Q ss_pred HHHHHHHccc
Q 011081 480 LRKEMFENQV 489 (494)
Q Consensus 480 ~~~~m~~~~~ 489 (494)
.+++.++.+|
T Consensus 361 ~~~~al~l~P 370 (388)
T d1w3ba_ 361 HYKEAIRISP 370 (388)
T ss_dssp HHHHHHTTCT
T ss_pred HHHHHHHhCC
Confidence 8887776544
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=8.2e-17 Score=151.62 Aligned_cols=346 Identities=14% Similarity=0.084 Sum_probs=264.5
Q ss_pred HHhhccCchhhhHHHHhhhccCCCCCCHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCC
Q 011081 78 ALGLKNNPHLALRFFSFTQHKSLCKHSLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSA 157 (494)
Q Consensus 78 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (494)
++...++++.|+.+|..+.... +-+..+|..+..++.+.|++++|...+..+...... .
T Consensus 42 ~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------------~ 100 (388)
T d1w3ba_ 42 IHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-------------------F 100 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------C
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhccccccccccccccccccc-------------------c
Confidence 3445688999999999986554 346788999999999999999999999988763321 1
Q ss_pred hhhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccc
Q 011081 158 PFVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
..............+. ...+............. ...............+....+...+.......+.
T Consensus 101 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 167 (388)
T d1w3ba_ 101 IDGYINLAAALVAAGD---MEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN--------- 167 (388)
T ss_dssp HHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT---------
T ss_pred cccccccccccccccc---ccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccCcc---------
Confidence 2222222233333333 34444444444433322 4455555666677778888888888777654332
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
+...+..+...+...|++++|...+++..+.. +-+..++..+...+...|++++|...++.....+ +.+.
T Consensus 168 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 168 --------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp --------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred --------hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 67788888899999999999999999888764 3356788889999999999999999999988764 4567
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011081 318 VAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGEL 397 (494)
Q Consensus 318 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 397 (494)
..+..+...|.+.|++++|+..|++..+.. +-+..+|..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 788889999999999999999999988764 5567888899999999999999999999887764 45677888888999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 011081 398 CDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGN 473 (494)
Q Consensus 398 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 473 (494)
...|++++|++.|++.+... +-+..++..+..+|.+.|++++|.+.|++.++. .|+ ...|..+..+|.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 99999999999998655432 234667888999999999999999999999854 564 7788889888888775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.1e-12 Score=120.09 Aligned_cols=256 Identities=12% Similarity=0.013 Sum_probs=199.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEP 280 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 280 (494)
-....+.+.|++++|...|+++++.+|. +..+|..+..+|...|++++|...|.+..+.. +-
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 85 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-----------------HMEAWQYLGTTQAENEQELLAISALRRCLELK-PD 85 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cc
Confidence 3556688899999999999999887664 78899999999999999999999999998764 34
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh----------------HHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVV----------------AYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----------------~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
+...+..+...|...|++++|.+.++...... |+.. .....+..+...+.+.+|.+.|.+..
T Consensus 86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 86 NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 57788889999999999999999999987653 2211 11122333445567788999988877
Q ss_pred hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH
Q 011081 345 LSG-VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTE 423 (494)
Q Consensus 345 ~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 423 (494)
+.. -..+...+..+...+...|++++|...|++..... +-+...|..+...+...|++++|++.|++.+.... -+.
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~ 240 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP--GYI 240 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh--ccH
Confidence 642 23466788889999999999999999999998764 23577888899999999999999999998776542 356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 424 KSYMFLIKGLCEEGKMEEALKVQAEMVGK----------GFEPSLEIYSAFIDGYMKEGNVEMATM 479 (494)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~p~~~~~~~li~~~~~~g~~~~a~~ 479 (494)
.+|..+..+|.+.|++++|++.|++.++. ........|..+-.++...|+.+.+..
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 67888999999999999999999998762 111223456666667777777655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.3e-12 Score=119.63 Aligned_cols=227 Identities=12% Similarity=0.056 Sum_probs=185.9
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccccccc
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRV 243 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
....+.+.|+ +++|+..|+++++.... +..+|..+..++...|++++|...|+++.+..|.
T Consensus 25 ~g~~~~~~g~---~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------------- 85 (323)
T d1fcha_ 25 EGLRRLQEGD---LPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD--------------- 85 (323)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc---------------
Confidence 3455778899 99999999999987544 6788999999999999999999999999876554
Q ss_pred ccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHh----------------HHHHHHHHHHhcCCHHHHHHHHHH
Q 011081 244 RPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCY----------------SYSVLMAVFCEERRMREAEKLWEE 307 (494)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------------~~~~li~~~~~~g~~~~a~~~~~~ 307 (494)
+...|..+...|...|++++|.+.+++..... |+.. .....+..+.+.+.+++|.+.+..
T Consensus 86 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 86 --NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred --cccccccccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 67889999999999999999999999987642 2211 111223344556778889999888
Q ss_pred HHhCC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011081 308 MRDKN-VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPE 386 (494)
Q Consensus 308 m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 386 (494)
..+.. -..+..++..+...+...|++++|+..|++..... +-+...|..+...|...|++++|.+.|++.++.. +-+
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence 76643 23456788899999999999999999999988764 4567889999999999999999999999998864 235
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 387 GSTIEVLIGELCDKRRVFEALDILKARVV 415 (494)
Q Consensus 387 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 415 (494)
...+..+..+|.+.|++++|++.|++.+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67788899999999999999999997765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4.5e-10 Score=101.76 Aligned_cols=213 Identities=8% Similarity=0.024 Sum_probs=103.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcC
Q 011081 199 CNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREG-AFEKVEDVWVEMARLG 277 (494)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g 277 (494)
++.+...+.+.+..++|+++++++++.+|. +..+|+....++...| ++++|+..++...+..
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-----------------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~ 108 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-----------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 108 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-----------------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 334444445555555555555555554433 4555555555555544 3555555555555443
Q ss_pred CCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011081 278 CEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEH 357 (494)
Q Consensus 278 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 357 (494)
+-+..+|..+...+.+.|++++|+..++.+.+.. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+...|+.
T Consensus 109 -p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~ 185 (315)
T d2h6fa1 109 -PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQ 185 (315)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHH
Confidence 2244455555555555555555555555555542 3345555555555555555555555555555543 334445554
Q ss_pred HHHHHHhcCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 358 LVNGYCRAGD------VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIK 431 (494)
Q Consensus 358 li~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 431 (494)
+...+.+.+. +++|++.+...++.. +-+...|+.+...+. .....++.+.+...........+...+..++.
T Consensus 186 r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 263 (315)
T d2h6fa1 186 RYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVD 263 (315)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 4444444333 345555555555443 123344444433322 23334444444433333222233444444444
Q ss_pred HH
Q 011081 432 GL 433 (494)
Q Consensus 432 ~~ 433 (494)
.|
T Consensus 264 ~y 265 (315)
T d2h6fa1 264 IY 265 (315)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=8.3e-10 Score=99.94 Aligned_cols=214 Identities=7% Similarity=-0.020 Sum_probs=169.6
Q ss_pred hhHHHHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCC-ChhHHHHHHHHHhcCCccccccccccc
Q 011081 159 FVFDLLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGK-GVISGYEIYREVFGLDSDATAGIGKDV 237 (494)
Q Consensus 159 ~~~~~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 237 (494)
.+|+.+-..+.+.+. .++|+++++.+++..+. +..+|+....++...| ++++|++.++.++..++.
T Consensus 44 ~a~~~~~~~~~~~e~---~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~--------- 110 (315)
T d2h6fa1 44 DVYDYFRAVLQRDER---SERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--------- 110 (315)
T ss_dssp HHHHHHHHHHHHTCC---CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHHHHHHHHhCCc---hHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh---------
Confidence 345556666777777 99999999999997644 6778899888888876 589999999999887654
Q ss_pred ccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011081 238 KRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDV 317 (494)
Q Consensus 238 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 317 (494)
+..+|+.+...+.+.|++++|++.++++.+.. +-+...|..+...+.+.|++++|++.++.+++.. +.+.
T Consensus 111 --------~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~ 180 (315)
T d2h6fa1 111 --------NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN 180 (315)
T ss_dssp --------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH
T ss_pred --------hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccH
Confidence 89999999999999999999999999999875 5578899999999999999999999999999875 4577
Q ss_pred hHHHHHHHHHHccCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhH
Q 011081 318 VAYNTIIGGFCEIGE------MARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP-EGSTI 390 (494)
Q Consensus 318 ~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~ 390 (494)
..|+.+...+.+.+. +++|++.+.+..+.. +.+...|+.+...+.. ...+++.+.++...+....+ +...+
T Consensus 181 ~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 258 (315)
T d2h6fa1 181 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLI 258 (315)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHH
Confidence 889888777776665 678999999888765 5677888877666554 44678888888877643322 23344
Q ss_pred HHHHHHH
Q 011081 391 EVLIGEL 397 (494)
Q Consensus 391 ~~li~~~ 397 (494)
..+...|
T Consensus 259 ~~l~~~y 265 (315)
T d2h6fa1 259 AFLVDIY 265 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=2.1e-09 Score=97.04 Aligned_cols=187 Identities=8% Similarity=0.039 Sum_probs=111.2
Q ss_pred HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 011081 263 FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFRE 342 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 342 (494)
.++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+.+.+........+|...+..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45666677666654334445556666666667777777777777766553222234566777777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 011081 343 MGLSGVESSSVTFEHLVNG-YCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP 421 (494)
Q Consensus 343 m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p 421 (494)
+.+.+ +.+...|...... +...|+.+.|..+|+.+++.. +.+...|...+..+.+.|+++.|..+|++.+...+..|
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 66654 2233333333222 233466666777777666642 33455666666666667777777777766655544444
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 422 T--EKSYMFLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 422 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
. ...|...+..-...|+.+.+.++++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 34566666655566777777766666654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=5.6e-09 Score=94.18 Aligned_cols=222 Identities=9% Similarity=0.039 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHHHHHHHHH--------------hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYSVLMAVFC--------------EERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--------------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
+.+..+|+++...- +-+...|...+..+- ..+..++|..+|++..+...+.+...|...+..+.+
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34556666665542 223444444443322 234468899999999876556677789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHHHHH
Q 011081 330 IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGE-LCDKRRVFEALD 408 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~ 408 (494)
.|+++.|..+|+++.+.........|...+..+.+.|+.++|.++|+.+++.+. .+...|...... +...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHH
Confidence 999999999999998764333456789999999999999999999999988753 234444443333 345689999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 409 ILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGK-GFEPS--LEIYSAFIDGYMKEGNVEMATMLRKEMF 485 (494)
Q Consensus 409 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 485 (494)
+|+..+... +.+...|..+++.+.+.|+++.|..+|++.++. +..|+ ...|...+.--...|+.+.+.++.+++.
T Consensus 191 i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999877764 345678999999999999999999999999876 33443 5689999998889999999999999987
Q ss_pred Hccc
Q 011081 486 ENQV 489 (494)
Q Consensus 486 ~~~~ 489 (494)
+.-+
T Consensus 269 ~~~~ 272 (308)
T d2onda1 269 TAFR 272 (308)
T ss_dssp HHTT
T ss_pred HHCc
Confidence 7543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=4.1e-09 Score=96.69 Aligned_cols=238 Identities=11% Similarity=0.004 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-Cc----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC---C
Q 011081 249 TFNALMVGFYREGAFEKVEDVWVEMARLGC-EP----DCYSYSVLMAVFCEERRMREAEKLWEEMRD----KNVEH---D 316 (494)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~---~ 316 (494)
+++.+...|...|++++|+..|++..+... .+ ...++..+...+...|++..+...+..... .+... .
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 444455555555555555555555443210 00 112233444445555555555555544332 11111 1
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--C
Q 011081 317 VVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK----GFEP--E 386 (494)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p--~ 386 (494)
...+..+...+...|+++.+...+...... +.......+..+...+...++..++...+.+.... +..+ .
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 123334444555555555555555554432 11122233344444455555555555555443321 1000 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HH
Q 011081 387 GSTIEVLIGELCDKRRVFEALDILKARVVKFGL--FPTEKSYMFLIKGLCEEGKMEEALKVQAEMVG----KGFEPS-LE 459 (494)
Q Consensus 387 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~ 459 (494)
...+..+...+...|+.++|...+........- ......+..+..++...|++++|.+.+++... .+..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 112333344445555555555555432211110 11122333445555555555555555555442 122222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011081 460 IYSAFIDGYMKEGNVEMATMLRKEMFE 486 (494)
Q Consensus 460 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 486 (494)
.+..+...|.+.|++++|.+.+++.++
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444445555555555555555555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=2.2e-08 Score=91.66 Aligned_cols=303 Identities=10% Similarity=0.028 Sum_probs=213.3
Q ss_pred HHHHHHhcCChhcHHHHHHHHHHHHhCCCCcC----hHhHHHHHHHHHcCCChhHHHHHHHHHhcCCccccccccccccc
Q 011081 164 LIKCCLEVKNIEKIETCVDIVRMLMSRGLSVK----VSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKR 239 (494)
Q Consensus 164 li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
....+...|+ +++|++++++..+.....+ ..++..+..+|...|++++|.+.|++.....+.
T Consensus 18 rA~~~~~~g~---~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~----------- 83 (366)
T d1hz4a_ 18 RAQVAINDGN---PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ----------- 83 (366)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-----------
Confidence 3455778899 9999999999887543322 346777888999999999999999988653221
Q ss_pred ccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCc---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 240 VVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL----GCEP---DCYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 240 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
.........++..+...+...|++..+...+.+.... +... ....+..+...+...|+++.+...+.......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 163 (366)
T d1hz4a_ 84 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 163 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 0001123456777888899999999999999876542 1111 12355667788899999999999998886542
Q ss_pred ----CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011081 313 ----VEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GVES--SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 313 ----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 382 (494)
.......+..+...+...++..++...+.+.... +..+ ....+..+...+...|++++|...+....+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 243 (366)
T d1hz4a_ 164 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 243 (366)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 2223456667777888899999999888776542 1111 12345667778889999999999999876643
Q ss_pred CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 011081 383 FEP---EGSTIEVLIGELCDKRRVFEALDILKARVV---KFGLFPT-EKSYMFLIKGLCEEGKMEEALKVQAEMVGK--- 452 (494)
Q Consensus 383 ~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 452 (494)
... ....+..+...+...|++++|...++..+. ..+..|+ ...+..+..+|.+.|++++|.+.+++.++.
T Consensus 244 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 222 234455677889999999999999986543 2344343 346778889999999999999999987652
Q ss_pred -CCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 011081 453 -GFEP----SLEIYSAFIDGYMKEGNVEMATML 480 (494)
Q Consensus 453 -~~~p----~~~~~~~li~~~~~~g~~~~a~~~ 480 (494)
|... ....+..++..+...++.+++.+-
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 324 TGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3221 233455666777777877776553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1e-09 Score=96.33 Aligned_cols=129 Identities=6% Similarity=-0.079 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF 327 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (494)
.+|..+...|.+.|++++|+..|++.++.. +-+..+|+.+..+|.+.|++++|...|+++.+.. +.+..+|..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 345555556666666666666666655543 2344555666666666666666666666665543 22344555566666
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMC 379 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 379 (494)
...|++++|.+.|++..+.. +.+......+..++.+.+..+.+..+.....
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 66666666666666655543 2333333333334444444444444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.2e-09 Score=100.09 Aligned_cols=260 Identities=7% Similarity=-0.117 Sum_probs=162.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHH----------HHhcCCHhHHHHHH
Q 011081 201 ALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVG----------FYREGAFEKVEDVW 270 (494)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~----------~~~~g~~~~a~~~~ 270 (494)
.++....+.+..++|++++++++..+|+ +...|+..-.. +...|++++|+.++
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~P~-----------------~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~ 96 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGANPD-----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFL 96 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHCCC-----------------cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 3333333444457888888888766554 44555443332 22334577888888
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhHHH-HHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 271 VEMARLGCEPDCYSYSVLMAVFCEER--RMREAEKLWEEMRDKNVEHDVVAYN-TIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 271 ~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
+...+.. +-+...|..+..++...+ ++++|...++.+.+.. +.+...+. .....+...+.+++|+..++.+.+.+
T Consensus 97 ~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~ 174 (334)
T d1dcea1 97 ESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (334)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 8887764 345666777766666655 4788888888887764 34555554 34466777888899999888888775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 011081 348 VESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYM 427 (494)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 427 (494)
+-+...|+.+...+.+.|++++|...+....+. .|+. ......+...+..+++...+...+... .++...+.
T Consensus 175 -p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~--~~~~~~~~ 246 (334)
T d1dcea1 175 -FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR--AEPLFRCE 246 (334)
T ss_dssp -CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC--CCCSSSCC
T ss_pred -CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC--cchhhHHH
Confidence 567788888888888888877765554433322 1111 112223344455556666665444432 22333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVGKGFEP-SLEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
.+...+...|+.++|...+.+..+. .| +...|..+..++...|+.++|.+++++.++.+|
T Consensus 247 ~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 247 LSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 5556666667777777777776643 33 355666667777777777888887777777554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=5.5e-08 Score=84.93 Aligned_cols=219 Identities=10% Similarity=-0.078 Sum_probs=148.5
Q ss_pred HhHHHHHHHHHHHcCC-Cc--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011081 263 FEKVEDVWVEMARLGC-EP--DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEF 339 (494)
Q Consensus 263 ~~~a~~~~~~m~~~g~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 339 (494)
.+.++.-+++...... .+ ...+|..+...|.+.|++++|...|++.++.. +-+..+|+.+..+|.+.|++++|++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555666655421 11 23467788899999999999999999998864 45788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 011081 340 FREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGL 419 (494)
Q Consensus 340 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 419 (494)
|++..+.. +-+..++..+...|...|++++|...|+..++... .+......+...+.+.+..+.+..+.. ......
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 169 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQ-HFEKSD- 169 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHSC-
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHH-Hhhccc-
Confidence 99999875 45667888999999999999999999999988652 244444444444555555555544444 333322
Q ss_pred CCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccc
Q 011081 420 FPTEKSYMFLIKGLCEEG----KMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQVR 490 (494)
Q Consensus 420 ~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 490 (494)
++...++ ++..+.... ..+.+...+..... ..|+ ..+|..+...|...|++++|.+.|++.+..+|.
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 2222222 222222222 23333333222221 1222 356777888999999999999999999887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.97 E-value=2.2e-09 Score=98.23 Aligned_cols=263 Identities=8% Similarity=-0.017 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHH---HHc-------CCChhHHHHHHHHHhcCCcccccccccccccccccccC
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWE---VSR-------GKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN 246 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~---~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (494)
.++|+++++..++..+. +...|+..-.. +.. .|.+++|+..++.+...+|. +
T Consensus 45 ~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-----------------~ 106 (334)
T d1dcea1 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-----------------S 106 (334)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-----------------C
T ss_pred cHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-----------------c
Confidence 58999999999875433 34445443322 222 34477899999998776543 7
Q ss_pred HHHHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCcCHhHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 247 VHTFNALMVGFYREG--AFEKVEDVWVEMARLGCEPDCYSYS-VLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 247 ~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
...|..+..++...+ ++++|...+.++.+.. +++...+. .....+...+.+++|...++.+.+.. +-+..+|+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l 184 (334)
T d1dcea1 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 184 (334)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHH
T ss_pred HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 888888888877766 4889999999998874 34555554 44467777899999999999998875 4578899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRV 403 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 403 (494)
...+.+.|++++|...++..... .|+ ...+...+...+..+++...+....... +++...+..+...+...++.
T Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~ 258 (334)
T d1dcea1 185 SCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSE 258 (334)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhH
Confidence 99999999998876665544332 111 1223344566678888988888887765 34555666777778888999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 011081 404 FEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYM 469 (494)
Q Consensus 404 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 469 (494)
.+|...+.+..... +-+...|..+..++.+.|+.++|.+.+++..+. .|+ ...|..|...+.
T Consensus 259 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 259 LESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 99999987544332 124457778888999999999999999999864 675 445555554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=9.5e-07 Score=72.86 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011081 248 HTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGF 327 (494)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (494)
..|+- ...+...|++++|++.|+++. +|+..+|..+...|.+.|++++|++.|++.++.. +.+...|..+..+|
T Consensus 7 ~l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 7 SLWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence 34554 556788999999999998642 6778888999999999999999999999998875 55788999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011081 328 CEIGEMARAEEFFREMGLSGV--------------ES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEP 385 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 385 (494)
.+.|++++|++.|++...... .. ...++..+..++.+.|++++|.+.+....+....+
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999998865310 01 12455667778889999999999999888765444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.64 E-value=1.1e-06 Score=77.90 Aligned_cols=163 Identities=12% Similarity=-0.058 Sum_probs=70.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 011081 289 MAVFCEERRMREAEKLWEEMRDK----NVEH-DVVAYNTIIGGFCEIGEMARAEEFFREMGLS----GV-ESSSVTFEHL 358 (494)
Q Consensus 289 i~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~~l 358 (494)
...|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|.+.+++..+. |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34455555555555555544321 1001 1234555555555555555555555544321 10 0112233334
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHH----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC----CH-HHHH
Q 011081 359 VNGYCR-AGDVDSAILVYNDMCR----KGFEP-EGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFP----TE-KSYM 427 (494)
Q Consensus 359 i~~~~~-~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~-~~~~ 427 (494)
...|.. .|++++|.+.|++..+ .+-.+ -..++..+...+...|++++|++.|++........+ .. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444422 3555555555555432 11111 122344455555555566555555554333221111 00 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 011081 428 FLIKGLCEEGKMEEALKVQAEMVG 451 (494)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~ 451 (494)
..+..+...|+++.|.+.+++..+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344455566666666555553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=3.4e-06 Score=69.45 Aligned_cols=126 Identities=11% Similarity=-0.005 Sum_probs=103.5
Q ss_pred HHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 011081 203 IWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDC 282 (494)
Q Consensus 203 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 282 (494)
...+...|+++.|++.|+++ ..|+..+|..+..+|...|++++|++.|++.++.. +-+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i--------------------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~ 70 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV--------------------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLA 70 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS--------------------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc--------------------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhh
Confidence 44567789999999999875 24577889999999999999999999999999876 4567
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------C--C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011081 283 YSYSVLMAVFCEERRMREAEKLWEEMRDKNV------------E--H-DVVAYNTIIGGFCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 283 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 347 (494)
..|..+..+|.+.|++++|.+.|++...... . . ...++..+..+|.+.|++++|.+.|+...+..
T Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 71 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999865310 0 0 12456678889999999999999999988764
Q ss_pred CC
Q 011081 348 VE 349 (494)
Q Consensus 348 ~~ 349 (494)
..
T Consensus 151 ~~ 152 (192)
T d1hh8a_ 151 SE 152 (192)
T ss_dssp CS
T ss_pred CC
Confidence 33
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.54 E-value=2.8e-06 Score=75.24 Aligned_cols=201 Identities=12% Similarity=0.017 Sum_probs=136.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCc-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHhH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARL----GCEP-DCYSYSVLMAVFCEERRMREAEKLWEEMRDK----NV-EHDVVA 319 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~ 319 (494)
|.-....|...|++++|.+.|.+..+. +-.+ -..+|..+...|.+.|++++|.+.++...+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444466788999999999999988663 2112 2357889999999999999999999976542 21 112445
Q ss_pred HHHHHHHHH-ccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------
Q 011081 320 YNTIIGGFC-EIGEMARAEEFFREMGLS----GVES-SSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEG------ 387 (494)
Q Consensus 320 ~~~li~~~~-~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------ 387 (494)
+..+...|. ..|++++|++.|++..+. +.++ -..++..+...|...|++++|+..|+++.........
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 667777774 469999999999987542 2122 1345788899999999999999999998875322111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 011081 388 STIEVLIGELCDKRRVFEALDILKARVVKFGLFPT---EKSYMFLIKGLCE--EGKMEEALKVQAEMV 450 (494)
Q Consensus 388 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 450 (494)
..+...+..+...+++..|...+++......-.++ ......++.++-. .+.+++|+..|+++.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 12334445667789999999998854332211122 2244556666654 345888888887654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=5.1e-06 Score=62.09 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=45.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH
Q 011081 255 VGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMA 334 (494)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (494)
+.+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|+..+....+.+ +.+...|..+..+|...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 34445555555555555554443 2334445555555555555555555555554443 334445555555555555555
Q ss_pred HHHHHHHHHHhC
Q 011081 335 RAEEFFREMGLS 346 (494)
Q Consensus 335 ~A~~~~~~m~~~ 346 (494)
+|+..|++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=5.2e-06 Score=62.06 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=83.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC
Q 011081 202 LIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPD 281 (494)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 281 (494)
-...+.+.|++++|...|++++..+|. +...|..+..+|.+.|++++|+..+.+..+.. +.+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~ 70 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDW 70 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-----------------chhhhhcccccccccccccccchhhhhHHHhc-cch
Confidence 456778889999999999999887665 78899999999999999999999999999876 567
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 282 CYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
...|..+..++...|++++|+..|+...+..
T Consensus 71 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 71 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999999863
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=5.4e-06 Score=65.90 Aligned_cols=94 Identities=7% Similarity=0.082 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
....+.|.+.|++++|+..|.+..+.. +-+...|..+...|...|++++|...|+..++.. +.+..+|..+..+|...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 334455666666666666666666654 3345556666666666666666666666665543 33455666666666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 011081 331 GEMARAEEFFREMGLS 346 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~ 346 (494)
|++++|.+.|++....
T Consensus 92 g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 92 GKFRAALRDYETVVKV 107 (159)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6666666666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.42 E-value=0.00041 Score=59.70 Aligned_cols=226 Identities=12% Similarity=0.069 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNT 322 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (494)
...+..|...+.+.+++++|++.|++..+.| |...+..|...|.. ..++..|..++....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4566777788888999999999999998877 56677778778876 678999999999988876 4555555
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 011081 323 IIGGFCE----IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC----RAGDVDSAILVYNDMCRKGFEPEGSTIEVLI 394 (494)
Q Consensus 323 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 394 (494)
+...+.. ..+.+.|...++...+.|.. .....+...+. .......+...+......+ +...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence 5555543 46788999999998887632 22233333333 2445777888888777654 556667777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 395 GELCD----KRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCE----EGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 395 ~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
..+.. ..+...+...+.... +. .+......+...|.. ..+.++|..+|.+..+.| +...+..|..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~-~~---g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKAC-DL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhccc-cc---cccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 77765 456677777776433 33 356666666666655 568999999999999876 4566667777
Q ss_pred HHHh----cCCHHHHHHHHHHHHHccccc
Q 011081 467 GYMK----EGNVEMATMLRKEMFENQVRQ 491 (494)
Q Consensus 467 ~~~~----~g~~~~a~~~~~~m~~~~~~p 491 (494)
.|.+ ..+.++|.++|++..+.|..+
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 7765 348999999999998887653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=6.1e-06 Score=65.54 Aligned_cols=93 Identities=9% Similarity=0.039 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 287 VLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366 (494)
Q Consensus 287 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (494)
...+.|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+..+|..+..+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 33444555555555655555555543 3345555555555555555555555555555543 334455555555555555
Q ss_pred CHHHHHHHHHHHHHC
Q 011081 367 DVDSAILVYNDMCRK 381 (494)
Q Consensus 367 ~~~~a~~~~~~m~~~ 381 (494)
++++|...+++..+.
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 555555555555554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=3.6e-06 Score=69.80 Aligned_cols=98 Identities=13% Similarity=-0.015 Sum_probs=51.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN 360 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (494)
+...+......|.+.|++++|+..|++.++.. +.+...|+.+..+|.+.|++++|+..|++..+.. +-+..+|..+..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33344444455555555555555555554442 3344555555555555555555555555555432 233445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011081 361 GYCRAGDVDSAILVYNDMCR 380 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~ 380 (494)
+|.+.|++++|+..|+...+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=4e-06 Score=69.49 Aligned_cols=99 Identities=7% Similarity=-0.020 Sum_probs=88.8
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 245 PNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
|++..+......|.+.|++++|+..|.+.++.. +-+...|..+..+|.+.|++++|+..|+..++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 677778888999999999999999999998875 5577889999999999999999999999998864 34688999999
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 011081 325 GGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~m~~ 345 (494)
.+|.+.|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.18 E-value=9.7e-06 Score=59.94 Aligned_cols=89 Identities=8% Similarity=-0.013 Sum_probs=50.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011081 253 LMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGE 332 (494)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (494)
+...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|+...+.. +.+..+|..+..+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3444555666666666666655543 2245555555666666666666666666555543 3345555556666666666
Q ss_pred HHHHHHHHHHH
Q 011081 333 MARAEEFFREM 343 (494)
Q Consensus 333 ~~~A~~~~~~m 343 (494)
+++|++.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.17 E-value=0.0015 Score=55.85 Aligned_cols=222 Identities=13% Similarity=0.104 Sum_probs=107.6
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHh----cCCHhHHHHHHHH
Q 011081 197 STCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYR----EGAFEKVEDVWVE 272 (494)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~ 272 (494)
..+..|...+.+.+++++|.+.|++..+.+ +..++..|...|.. ..+...|...+..
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-------------------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~ 63 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK-------------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAK 63 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHcCCCcchhHHHHHHhhcc
Confidence 344444445555556666666665554322 33444444444444 3355555555555
Q ss_pred HHHcCCCcCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH----ccCCHHHHHHHHHHHH
Q 011081 273 MARLGCEPDCYSYSVLMAVFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFC----EIGEMARAEEFFREMG 344 (494)
Q Consensus 273 m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~ 344 (494)
..+.+ +......+...+.. ..+.+.|...++...+.| .......+...+. .......+...+....
T Consensus 64 a~~~~---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~ 137 (265)
T d1ouva_ 64 ACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 137 (265)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred ccccc---ccchhhccccccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhcccccCCCcccchhHHHHHHhhhhh
Confidence 55443 22223333333322 345556666666555554 1222222222222 1234455555555544
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 011081 345 LSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD----KRRVFEALDILKARVVK 416 (494)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 416 (494)
.. .+...+..|...|.. ..+...+...++...+.| +......+...|.. ..+.++|+..|.....
T Consensus 138 ~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~- 210 (265)
T d1ouva_ 138 DL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE- 210 (265)
T ss_dssp HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-
T ss_pred cc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhc-
Confidence 42 334455555555554 334555666666655554 33333334333333 4567777777764433
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011081 417 FGLFPTEKSYMFLIKGLCE----EGKMEEALKVQAEMVGKG 453 (494)
Q Consensus 417 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 453 (494)
.| +...+..|...|.+ ..+.++|.++|++..+.|
T Consensus 211 ~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 211 LE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp TT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 23 34445555555543 235667777777766655
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.16 E-value=1.1e-05 Score=59.60 Aligned_cols=91 Identities=10% Similarity=-0.019 Sum_probs=81.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 287 VLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAG 366 (494)
Q Consensus 287 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (494)
.+...+.+.|++++|...|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.. +.+...|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 45667889999999999999998875 4478999999999999999999999999998875 667899999999999999
Q ss_pred CHHHHHHHHHHHH
Q 011081 367 DVDSAILVYNDMC 379 (494)
Q Consensus 367 ~~~~a~~~~~~m~ 379 (494)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=0.002 Score=56.83 Aligned_cols=268 Identities=10% Similarity=0.085 Sum_probs=126.3
Q ss_pred CHhHHHHHHHHHHHCCChhHHHHHHHHHHcCCCCCChHHHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhcHHHHHHH
Q 011081 104 SLSSYATIIHILSRARLIGPARDVIRVALRSPENDPKLKLFEVLVKTYRECGSAPFVFDLLIKCCLEVKNIEKIETCVDI 183 (494)
Q Consensus 104 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~a~~~ 183 (494)
+..--..+.+-|-+.|.++.|..++..+.. |..++..+.+.++ ++.|+++
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------------------------~~rl~~~~v~l~~---~~~avd~ 62 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------------------------FGRLASTLVHLGE---YQAAVDG 62 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------------------------HHHHHHHHHTTTC---HHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------------------------HHHHHHHHHhhcc---HHHHHHH
Confidence 333344466677777778777777764322 4455666667777 7777776
Q ss_pred HHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCH
Q 011081 184 VRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAF 263 (494)
Q Consensus 184 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 263 (494)
+.+. + +..+|..+..++.+......|. +.... ...+......++..|-..|.+
T Consensus 63 ~~k~---~---~~~~~k~~~~~l~~~~e~~la~-----i~~~~----------------~~~~~d~l~~~v~~ye~~~~~ 115 (336)
T d1b89a_ 63 ARKA---N---STRTWKEVCFACVDGKEFRLAQ-----MCGLH----------------IVVHADELEELINYYQDRGYF 115 (336)
T ss_dssp HHHH---T---CHHHHHHHHHHHHHTTCHHHHH-----HTTTT----------------TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHc---C---CHHHHHHHHHHHHhCcHHHHHH-----HHHHH----------------hhcCHHHHHHHHHHHHHcCCh
Confidence 6543 1 4567777777777665543321 11110 122444445677778888888
Q ss_pred hHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------CHhHHHHHHHHHHccCCHHH
Q 011081 264 EKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEH--------DVVAYNTIIGGFCEIGEMAR 335 (494)
Q Consensus 264 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--------~~~~~~~li~~~~~~g~~~~ 335 (494)
++...+++...... ..+...++.++..|++.+. ++..+.+...... ..+ ....|..++-.|.+.|+++.
T Consensus 116 e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~ 192 (336)
T d1b89a_ 116 EELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 192 (336)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhcCCHHH
Confidence 88888887765432 4566677778877777543 3322222222110 000 01123444555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-------------HHhcCC
Q 011081 336 AEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGE-------------LCDKRR 402 (494)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-------------~~~~~~ 402 (494)
|..+.-. . .++..-....+..+.+..+.+...++....++. .| ...+.++.. +.+.++
T Consensus 193 A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~ 263 (336)
T d1b89a_ 193 AIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQ 263 (336)
T ss_dssp HHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred HHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCC
Confidence 5443211 1 223223334455555666655555555544432 22 222333333 333333
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011081 403 VFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALK 444 (494)
Q Consensus 403 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 444 (494)
+.....+++ .....+ +....+++...|...++++.-.+
T Consensus 264 l~li~p~Le-~v~~~n---~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 264 LPLVKPYLR-SVQNHN---NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp TTTTHHHHH-HHHTTC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHH-HHHHcC---hHHHHHHHHHHHhCcchhHHHHH
Confidence 333333333 222222 23456666666666666544333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.5e-05 Score=59.81 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEM---ARAEEFFREMGLSGVESS-SVTFEHLVNG 361 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~-~~~~~~li~~ 361 (494)
..+++.+...+++++|++.|+.....+ +.+..++..+..++.+.++. ++|+.+|+++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666667777777777777776654 44666677777777654433 457777777665542232 2356666777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 011081 362 YCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~~ 381 (494)
|.+.|++++|.+.|+.+++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777777764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=0.00011 Score=58.58 Aligned_cols=112 Identities=7% Similarity=0.023 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGC-EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIG 325 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (494)
...+......+.+.|++++|+..|.+.++.-- .+... +.-......+ ...+|+.+..
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~---------------~~~~~~~~~~-------~~~~~~nla~ 70 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------NEEAQKAQAL-------RLASHLNLAM 70 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------SHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc---------------hHHHhhhchh-------HHHHHHHHHH
Confidence 34556667788889999999999988765410 00000 0000000000 0123444555
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 326 GFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 326 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
+|.+.|++++|+..++...... +.+...|..+..+|...|++++|...|+..++.
T Consensus 71 ~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 71 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 5555555555555555555443 334555555555555555555555555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2e-05 Score=58.99 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HhHHHHHHHH
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERR---MREAEKLWEEMRDKNVEHD-VVAYNTIIGG 326 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~-~~~~~~li~~ 326 (494)
..+++.+...+++++|++.|++....+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467788889999999999999999876 5677888889999987554 5579999999987653333 3478889999
Q ss_pred HHccCCHHHHHHHHHHHHhCC
Q 011081 327 FCEIGEMARAEEFFREMGLSG 347 (494)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~ 347 (494)
|.+.|++++|++.|+++.+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 999999999999999999863
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=0.0037 Score=55.05 Aligned_cols=233 Identities=8% Similarity=0.013 Sum_probs=133.5
Q ss_pred HHHHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcccccccccccccccc
Q 011081 163 LLIKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVR 242 (494)
Q Consensus 163 ~li~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
.+...|.+.|. ++.|..+|..+. -|..++..+.+.+++..|.+.+...-
T Consensus 19 ~i~~~c~~~~l---ye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------------------- 67 (336)
T d1b89a_ 19 QVGDRCYDEKM---YDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------------------- 67 (336)
T ss_dssp ----------C---TTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHCCC---HHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC-------------------
Confidence 46667777787 888888876442 25567777788888888877776551
Q ss_pred cccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011081 243 VRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT 322 (494)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (494)
+..+|..+...+.+.....-+ .+...+...+......++..|-..|.+++...+++...... ..+...++-
T Consensus 68 ---~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~ 138 (336)
T d1b89a_ 68 ---STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 138 (336)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHH
T ss_pred ---CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHH
Confidence 566788888888777665443 22233334455566778888888888888888888765432 456777888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCChhhHHHHH
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKG--------FEPEGSTIEVLI 394 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li 394 (494)
++..|++.+ .++..+.++.... ..| ...++..|.+.+.++++.-++..+.... -.++..-....+
T Consensus 139 L~~lyak~~-~~kl~e~l~~~s~---~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~ 211 (336)
T d1b89a_ 139 LAILYSKFK-PQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFK 211 (336)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHST---TSC---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHH
T ss_pred HHHHHHHhC-hHHHHHHHHhccc---cCC---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHH
Confidence 888888764 3444444444321 111 2234455555555555554444431110 133444445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011081 395 GELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQA 447 (494)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (494)
..+.+..+.+...++....+.. .|+ ..+.++......-+..+..+.+.
T Consensus 212 e~~~k~~N~e~~~~~i~~yL~~---~p~--~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 212 DIITKVANVELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHccCChHHHHHHHHHHHHc---CHH--HHHHHHHHhccCCCHHHHHHHHH
Confidence 6677777777666666544443 243 34556666666666666555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00017 Score=57.49 Aligned_cols=130 Identities=7% Similarity=-0.100 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
.+......+.+.|++++|...|.+.++.. |.. .+..+.-......+. ..+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~-------~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR-------LASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH-------HHHHHHHHHHHH
Confidence 34455667788888888888888776531 100 000001111111111 246777889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011081 364 RAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEG 437 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 437 (494)
+.|++++|+..++..++.+ +.+...+..+..+|...|++++|+..|+..+...+ -+......+-.+.-+.+
T Consensus 74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P--~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHH
Confidence 9999999999999999875 34788899999999999999999999997776542 24555555544443333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.87 E-value=0.00021 Score=55.75 Aligned_cols=110 Identities=6% Similarity=-0.007 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC----CcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARLGC----EPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNT 322 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (494)
...+......+.+.|++.+|+..|.+..+.-. .++.... ..... ....+|+.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~~----~~~~~~~N 72 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKKN----IEISCNLN 72 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhhh----HHHHHHhh
Confidence 34566677788899999999999988775310 0111100 00000 01235566
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 323 IIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 323 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
+..+|.+.|++++|++.+++..+.+ +.+..+|..+..++...|++++|+..|+..++.
T Consensus 73 la~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 73 LATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6667777777777777777766654 456667777777777777777777777776665
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00018 Score=54.24 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-----HhHHHHH
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVE-HD-----VVAYNTI 323 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~-----~~~~~~l 323 (494)
+..+...|.+.|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|...++.+++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4455566666677777777777666654 335566666666677777777777766666543100 00 1244455
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 011081 324 IGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~ 345 (494)
...+...+++++|++.|++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 5555566666666666655543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=0.00018 Score=54.19 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMG 344 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 344 (494)
+...+.+.|++++|+..|.+.++.+ +.+..+|..+..+|.+.|++++|+..++++.
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3444444444444444444444432 2234444444444444444444444444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.00021 Score=56.90 Aligned_cols=125 Identities=10% Similarity=0.046 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011081 250 FNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE 329 (494)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (494)
+......+.+.|++++|+..|.+..+.. .............. +. +.+...|..+..+|.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~~----~~----~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGAK----LQ----PVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHGG----GH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHHH----hC----hhhHHHHHHHHHHHHh
Confidence 4555677788899999999888775420 00000011110000 00 1234456666677777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011081 330 IGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGE 396 (494)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 396 (494)
.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|+..++.. +.+......+...
T Consensus 90 ~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 777777777777777654 4566677777777777777777777777777653 1234444444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.77 E-value=0.00056 Score=53.25 Aligned_cols=112 Identities=13% Similarity=-0.097 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011081 285 YSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCR 364 (494)
Q Consensus 285 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (494)
+..-...+.+.|++++|...|.+..+.- +... ............. ....+|+.+..+|.+
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~-------~~~~~~~Nla~~~~~ 79 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN-------IEISCNLNLATCYNK 79 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh-------HHHHHHhhHHHHHHH
Confidence 3344456777888888888888776531 1000 0000000000111 123577889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 011081 365 AGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKF 417 (494)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 417 (494)
.|++++|+..++..++.+ +.+..+|..+..++...|++++|+..|+..+.-.
T Consensus 80 l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 80 NKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999875 4478899999999999999999999999877654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.77 E-value=0.0004 Score=55.12 Aligned_cols=110 Identities=9% Similarity=0.031 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH
Q 011081 247 VHTFNALMVGFYREGAFEKVEDVWVEMARL---GCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTI 323 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (494)
...+......+.+.|++.+|...|.+.... ....+.. . ......+ ...+|+.+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~----------------~-~~~~~~~-------~~~~~~Nl 70 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK----------------E-SKASESF-------LLAAFLNL 70 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------------H-HHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh----------------h-hhhcchh-------HHHHHHhH
Confidence 455677788899999999999999886542 1111000 0 0000000 12234445
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 324 IGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 324 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
..+|.+.|++++|+..+++..... +.+..+|..+..+|...|++++|...|+.+++.
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555555443 444555555555555555555555555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.00026 Score=56.35 Aligned_cols=133 Identities=11% Similarity=-0.050 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 286 SVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRA 365 (494)
Q Consensus 286 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 365 (494)
......+.+.|++++|++.|++.++. ...........+.. .. -+.....|..+..+|.+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~-------~~-~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA-------KL-QPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG-------GG-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH-------Hh-ChhhHHHHHHHHHHHHhh
Confidence 34555677889999999988877642 00000011111110 00 022456778888999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011081 366 GDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEE 441 (494)
Q Consensus 366 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 441 (494)
|++++|+..++.+++.. +.+...|..+..++...|++++|++.|+..+.-.+ .+...+..+..+..+.....+
T Consensus 91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p--~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 34678899999999999999999999998777542 355566666665544444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=2.8e-05 Score=74.24 Aligned_cols=114 Identities=13% Similarity=-0.022 Sum_probs=59.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 281 DCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVN 360 (494)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (494)
+...+..+...+.+.|+.+.|...+....+.. ...++..+...+...|++++|...|++..+.. +-+...|+.|..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 34455666666777777777776666554321 12456667777777777777777777777653 445567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 011081 361 GYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCD 399 (494)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 399 (494)
.+...|+..+|...|.+.+... .|-..++..|...+.+
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 7777777777777777777654 4556666666655543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=0.00044 Score=55.40 Aligned_cols=124 Identities=12% Similarity=0.112 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011081 251 NALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEI 330 (494)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (494)
..........|++++|.+.|.+..+.- +.... ..+ ..+.+ +...-..+... ....+..+...+.+.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l-----~~~-~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPVL-----DDL-RDFQF--VEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT-----GGG-TTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc-----ccC-cchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 334467788999999999999987641 11100 000 00111 11111111111 234667778888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhh
Q 011081 331 GEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCR-----KGFEPEGST 389 (494)
Q Consensus 331 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 389 (494)
|++++|+..++++.+.. +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 88888888888887765 66778888888888888888888888887643 578887654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=2.7e-05 Score=74.29 Aligned_cols=135 Identities=10% Similarity=-0.100 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011081 295 ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILV 374 (494)
Q Consensus 295 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 374 (494)
.+.++.|+..++...+.. .++...+..+...+.+.|+.++|...++...... ...++..+...+...|++++|...
T Consensus 99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence 344455554444433322 3355667778888888888888888777665321 135677788888888899999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011081 375 YNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEE 436 (494)
Q Consensus 375 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 436 (494)
|++..+.. +-+...|+.+...+...|+..+|+..|.+.+.-. .|-..++..|...+.+.
T Consensus 175 y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~--~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 175 YRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK--FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHh
Confidence 88888764 3355788888888888899988888888666433 46677777777766543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=0.00054 Score=54.87 Aligned_cols=125 Identities=11% Similarity=0.050 Sum_probs=87.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011081 288 LMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGD 367 (494)
Q Consensus 288 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (494)
........|++++|.+.|......- +.... ......+-+...-..+.. .....+..+...+...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 3356778899999999999987641 11100 000111111111112211 123567788999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----HHhCCCCCCHHHHH
Q 011081 368 VDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKAR----VVKFGLFPTEKSYM 427 (494)
Q Consensus 368 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~p~~~~~~ 427 (494)
+++|+..++.+++.. +-+...|..++.+|...|+..+|++.|++. .++.|+.|...+-.
T Consensus 83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 999999999999875 458889999999999999999999999864 24569999987643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.60 E-value=0.00071 Score=53.57 Aligned_cols=143 Identities=8% Similarity=-0.036 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011081 284 SYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYC 363 (494)
Q Consensus 284 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (494)
.+......+.+.|++++|...|......- +. ..+...........+ ....|+.+..+|.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~--~~------------~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EM------------EYGLSEKESKASESF-------LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TT------------CCSCCHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH------------hhccchhhhhhcchh-------HHHHHHhHHHHHH
Confidence 45556677888999999999988765420 00 000000111111111 1346777889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHH
Q 011081 364 RAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKM-EEA 442 (494)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A 442 (494)
+.|++++|+..++..++.+ +.+...|..+..++...|++++|...|...+.-. +.+......+-....+.+.. +..
T Consensus 76 ~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999875 4578889999999999999999999999766532 23444555554444444433 334
Q ss_pred HHHHHHHH
Q 011081 443 LKVQAEMV 450 (494)
Q Consensus 443 ~~~~~~m~ 450 (494)
.+++..|.
T Consensus 153 kk~~~~~f 160 (168)
T d1kt1a1 153 RRTYANMF 160 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.47 E-value=0.00011 Score=63.18 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=32.5
Q ss_pred cCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 011081 208 RGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARL 276 (494)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 276 (494)
+.|++++|.+.+++.++..|. |...+..+...++..|++++|...|+...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-----------------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-----------------DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456666666666666655443 5666666666666666666666666666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.46 E-value=0.00014 Score=62.53 Aligned_cols=123 Identities=8% Similarity=-0.008 Sum_probs=76.4
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCEIGEMARA 336 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 336 (494)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+.. +-+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 345688888888888888775 5567788888888888888888888888887763 22344444444444333333332
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011081 337 EEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRK 381 (494)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 381 (494)
..-+......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 221111111121223344444556677778888888888887664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.45 E-value=0.00032 Score=54.12 Aligned_cols=71 Identities=4% Similarity=-0.105 Sum_probs=47.7
Q ss_pred HcCCChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCH----------hHHHHHHHHHHHc
Q 011081 207 SRGKGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAF----------EKVEDVWVEMARL 276 (494)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~ 276 (494)
-+.+.+++|.+.|+...+.+|. +..++..+..++...+++ ++|+..|++.++.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~-----------------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l 70 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPL-----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI 70 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCc-----------------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3456689999999999887765 788888888888765444 5566666666554
Q ss_pred CCCcCHhHHHHHHHHHHhc
Q 011081 277 GCEPDCYSYSVLMAVFCEE 295 (494)
Q Consensus 277 g~~p~~~~~~~li~~~~~~ 295 (494)
. +-+..+|..+..+|...
T Consensus 71 ~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 71 D-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp C-TTCHHHHHHHHHHHHHH
T ss_pred c-chhhHHHhhHHHHHHHc
Confidence 3 33445555555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.44 E-value=0.00036 Score=53.77 Aligned_cols=110 Identities=9% Similarity=0.040 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcC----------CChhHHHHHHHHHhcCCcccccccccccccccccccC
Q 011081 177 IETCVDIVRMLMSRGLSVKVSTCNALIWEVSRG----------KGVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPN 246 (494)
Q Consensus 177 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (494)
+++|++.|+...+..+. ++.++..+..+|... +.+++|.+.|+++++.+|. +
T Consensus 13 fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-----------------~ 74 (145)
T d1zu2a1 13 FEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-----------------K 74 (145)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----------------C
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-----------------h
Confidence 99999999999987644 778888888877643 4457899999999887654 7
Q ss_pred HHHHHHHHHHHHhcCC-----------HhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011081 247 VHTFNALMVGFYREGA-----------FEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKN 312 (494)
Q Consensus 247 ~~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 312 (494)
..+|+.+..+|...|+ +++|.+.|++..+. .|+...|..-+..+ .+|.+++.+..+.|
T Consensus 75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 8899999888877653 34555555555543 44444444333333 23444444444433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.24 E-value=0.0037 Score=48.53 Aligned_cols=63 Identities=14% Similarity=0.002 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 425 SYMFLIKGLCEEGKMEEALKVQAEMVGK-----GFEPS-----LEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
.|+.+..+|...|++++|.+.+++.++. ...++ ...|..+..+|...|++++|.+.|++.++.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555544421 11111 113444455555566666666665555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.13 E-value=0.0042 Score=48.17 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=34.0
Q ss_pred HHHHHH--HHHHHhcCCHhHHHHHHHHHHHcCC-CcC----------HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011081 248 HTFNAL--MVGFYREGAFEKVEDVWVEMARLGC-EPD----------CYSYSVLMAVFCEERRMREAEKLWEEMR 309 (494)
Q Consensus 248 ~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~g~-~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 309 (494)
.+|..+ ...+.+.|++++|+..|++.++..- .|+ ...|+.+..+|.+.|++++|...+++..
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 445555 3445556777777777777655310 111 2345555666666666666665555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.70 E-value=0.053 Score=38.81 Aligned_cols=140 Identities=14% Similarity=0.074 Sum_probs=96.2
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011081 328 CEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGFEPEGSTIEVLIGELCDKRRVFEAL 407 (494)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 407 (494)
.-.|..++..+++.+.... .+..-||.+|--....-+-+-..++++..-+. .|. ...++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 4467788888888877653 35566777776666666666666666655332 121 2234444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011081 408 DILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFIDGYMKEGNVEMATMLRKEMFEN 487 (494)
Q Consensus 408 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 487 (494)
..+- .+ ..+...++..++.+...|+-+.-.+++..+.+.+ +|++...-.+..+|.+.|+..++-+++++.-++
T Consensus 77 ~C~~-~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 77 ECGV-IN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHH-HT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHH-Hh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 4432 11 1344556777888889999999999999987754 788888888999999999999999999999998
Q ss_pred ccc
Q 011081 488 QVR 490 (494)
Q Consensus 488 ~~~ 490 (494)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.011 Score=41.14 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=12.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011081 319 AYNTIIGGFCEIGEMARAEEFFREMGL 345 (494)
Q Consensus 319 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 345 (494)
+++.+..+|.+.|++++|++.++++.+
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344444444444444444444444444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.015 Score=40.40 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-----CCcC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011081 246 NVHTFNALMVGFYREGAFEKVEDVWVEMARLG-----CEPD-CYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVA 319 (494)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 319 (494)
+...+-.+...+.+.|++++|...|++..+.. ..++ ..+++.|..++.+.|++++|...++++++.. +-+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 44556678899999999999999999886541 1122 4678999999999999999999999998874 334555
Q ss_pred HHHH
Q 011081 320 YNTI 323 (494)
Q Consensus 320 ~~~l 323 (494)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.43 E-value=0.058 Score=39.98 Aligned_cols=110 Identities=10% Similarity=0.127 Sum_probs=68.5
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE----IGEMARAE 337 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 337 (494)
++++|+++|++..+.| +...+..|.. ....+.++|.+++++..+.| +...+..|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 5677888888877766 2233333322 33456778888888777765 55566666666654 34677788
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011081 338 EFFREMGLSGVESSSVTFEHLVNGYCR----AGDVDSAILVYNDMCRKG 382 (494)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 382 (494)
++|++..+.| +......|...|.. ..+.++|.++|+...+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8888777765 23344445445544 346777777777776666
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.11 E-value=0.071 Score=39.46 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHhcCCcccccccccccccccccccCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHH
Q 011081 211 GVISGYEIYREVFGLDSDATAGIGKDVKRVVRVRPNVHTFNALMVGFYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMA 290 (494)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 290 (494)
++++|.+.|++..+.+ +...+..|. .....+.++|+.++++..+.| +......|..
T Consensus 8 d~~~A~~~~~kaa~~g-------------------~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~ 63 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-------------------EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGD 63 (133)
T ss_dssp HHHHHHHHHHHHHHTT-------------------CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-------------------Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHH
Confidence 5677888888775543 222223332 233467889999999988877 4556666776
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCC
Q 011081 291 VFCE----ERRMREAEKLWEEMRDKNVEHDVVAYNTIIGGFCE----IGEMARAEEFFREMGLSGV 348 (494)
Q Consensus 291 ~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 348 (494)
.|.. ..+.++|.++|+...+.| +......|...|.. ..+.++|.++|++..+.|.
T Consensus 64 ~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 64 FYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 6665 467899999999999887 66677777777765 4589999999999988773
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.66 E-value=0.22 Score=35.58 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=66.9
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC----------------CCCHhH
Q 011081 257 FYREGAFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDK-NV----------------EHDVVA 319 (494)
Q Consensus 257 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~----------------~~~~~~ 319 (494)
+.-.|..++..+++.+.... .+..-||-+|.-....-+-+...++++.+-+. .+ ..+...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~ 88 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 88 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence 34457788888888888764 35566777776666666666666666665432 11 011222
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011081 320 YNTIIGGFCEIGEMARAEEFFREMGLSGVESSSVTFEHLVNGYCRAGDVDSAILVYNDMCRKGF 383 (494)
Q Consensus 320 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 383 (494)
.+.-++.+.++|+-++-.++++++.+.+ ++++.....+..+|.+.|...++-+++.+.-+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3334444445555555555555544433 44555555555555555555555555555555543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.08 E-value=0.2 Score=35.99 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccc
Q 011081 422 TEKSYMFLIKGLCEEG---KMEEALKVQAEMVGKGFEPS-LEIYSAFIDGYMKEGNVEMATMLRKEMFENQV 489 (494)
Q Consensus 422 ~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 489 (494)
...+--.+..++++.. ++++++.++++..+.+ +.+ ...+..|.-+|.+.|++++|.++++.+++.+|
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3333333444444332 2345555555555321 112 23334444455555555555555555555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.40 E-value=0.94 Score=32.35 Aligned_cols=64 Identities=8% Similarity=-0.010 Sum_probs=46.7
Q ss_pred HHHHHhcCChhcHHHHHHHHHHHHhCCCCcChHhHHHHHHHHHcCCChhHHHHHHHHHhcCCcc
Q 011081 165 IKCCLEVKNIEKIETCVDIVRMLMSRGLSVKVSTCNALIWEVSRGKGVISGYEIYREVFGLDSD 228 (494)
Q Consensus 165 i~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (494)
..++++....+.+++|+.+++...+.+..-....+-.|.-+|.+.|++++|.+.++.+++..|.
T Consensus 42 Aw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 42 AWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3344555554458999999999987543212345556777899999999999999999886654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.67 E-value=3.8 Score=27.47 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011081 402 RVFEALDILKARVVKFGLFPTEKSYMFLIKGLCEEGKMEEALKVQAEMVGKGFEPSLEIYSAFID 466 (494)
Q Consensus 402 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 466 (494)
+.-+..+-+. .+-...+.|++....+.+.+|-+.+++..|.++|+-.+.+ ..++...|..+++
T Consensus 21 D~we~rrgmN-~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMN-TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHH-HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHH-HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 4445555554 3445667788888888888888888888888888877754 2334456666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.76 E-value=5 Score=26.86 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=41.4
Q ss_pred CHhHHHHHHHHHHHcCCCcCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011081 262 AFEKVEDVWVEMARLGCEPDCYSYSVLMAVFCEERRMREAEKLWEEMRDKNVEHDVVAYNTII 324 (494)
Q Consensus 262 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (494)
+.=++.+-++.+....+.|+.....+.+.+|.+.+++..|.++++..+.+. .++...|.-++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 344566666667667777888888888888888888888888887776542 22344554444
|