Citrus Sinensis ID: 011083

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----
MVLSLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEEQ
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcc
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccEccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcc
mvlslfnnqeyWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISkmprmrpeleagklgecfkaKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECskgfgpwmVTHAIEVLTagshqadtLLHEerdnlggismEELHRLVYAQVLsshpltwqiaPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEIcrlyeldsvsSNIMKIAGMynwkhgkkgsgVYWLQQARDEARLNRIAQQMFDSvgrsisdeNFRQWEGLIQLLgsepktaggleFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISlmknpctpqrfwlplLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIArlrpdfieadlpphalSSVRLALATNlgrttleeq
MVLSLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMprmrpeleagklgecfkAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATnlgrttleeq
MVLSLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPllnvlqtnlllnklqelSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEEQ
***SLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALAT**********
**LSLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMR*************AKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTL**********ISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRD****DAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELS***************HALSSVRLALATNLGRTTLE**
MVLSLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEEQ
*VLSLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEEQ
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MVLSLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVRLALATNLGRTTLEEQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query494 2.2.26 [Sep-21-2011]
Q8RXH2716 Nuclear pore complex prot yes no 0.906 0.625 0.716 0.0
Q8R480656 Nuclear pore complex prot yes no 0.769 0.579 0.272 7e-23
Q9BW27656 Nuclear pore complex prot yes no 0.761 0.573 0.274 1e-22
Q4QQS8656 Nuclear pore complex prot yes no 0.769 0.579 0.269 2e-22
Q3ZC98656 Nuclear pore complex prot yes no 0.751 0.565 0.264 5e-20
Q6DBY0649 Nuclear pore complex prot yes no 0.831 0.633 0.246 3e-19
Q6DK84653 Nuclear pore complex prot yes no 0.779 0.589 0.255 2e-14
Q68FJ0653 Nuclear pore complex prot N/A no 0.779 0.589 0.254 7e-13
Q54NA0890 Nuclear pore complex prot no no 0.831 0.461 0.181 0.0003
>sp|Q8RXH2|NUP85_ARATH Nuclear pore complex protein Nup85 OS=Arabidopsis thaliana GN=NUP85 PE=2 SV=1 Back     alignment and function desciption
 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/448 (71%), Positives = 385/448 (85%)

Query: 46  QTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWI 105
           +TENGLVEAVAVLISKMPRMRP+LE GK GEC  AKPDFMK  E+W++QI KLECS FW+
Sbjct: 268 ETENGLVEAVAVLISKMPRMRPQLEDGKFGECSAAKPDFMKTRERWQSQITKLECSAFWV 327

Query: 106 QCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKC 165
           QCAH QT+EGLRNML+IM+GN + L   TC+WMEL+++H LY+RPFT GL+ M+ LAQKC
Sbjct: 328 QCAHHQTREGLRNMLKIMIGNADCLRAATCNWMELFVSHLLYLRPFTKGLDGMHSLAQKC 387

Query: 166 IQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHE 225
           +Q KP+  SH+L+ LLIGILGEN EVVLAECSK FG WMV HA+E+LTAGS + + L+HE
Sbjct: 388 VQSKPVNTSHKLLRLLIGILGENTEVVLAECSKEFGSWMVAHAMELLTAGSEEGEVLVHE 447

Query: 226 ERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQ 285
           E+  LGGI+MEELHRLVYAQVLSSH LTWQIAPIYL SC KQG+GLLE+L Y+QPV  NQ
Sbjct: 448 EQRKLGGINMEELHRLVYAQVLSSHALTWQIAPIYLASCEKQGLGLLELLFYRQPVQENQ 507

Query: 286 LLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFD 345
           +L+K+LEICRLYEL +VS+ +MKI+G+++WKHG+KGSG++WLQQARDE  L+ IAQQ+FD
Sbjct: 508 MLIKSLEICRLYELSNVSAKLMKISGVHHWKHGRKGSGIFWLQQARDENCLSVIAQQLFD 567

Query: 346 SVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAV 405
           SVG+S+SDE+ +QWEGL++LLGSE + +GGL+FLH YRDFK+SL  + DGKT DAA +AV
Sbjct: 568 SVGKSLSDESLKQWEGLVELLGSESQISGGLDFLHKYRDFKRSLKVVHDGKTIDAAHEAV 627

Query: 406 ESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDF 465
           E L+SLMK+P TPQRFWLPLLHDSLKLLNW ER LLNV QTNL+LNKLQELSIARLRP F
Sbjct: 628 ERLVSLMKSPSTPQRFWLPLLHDSLKLLNWPERSLLNVTQTNLMLNKLQELSIARLRPGF 687

Query: 466 IEADLPPHALSSVRLALATNLGRTTLEE 493
           IE++L   A+ SVRLALATNLGR  LEE
Sbjct: 688 IESELSAQAVGSVRLALATNLGRAFLEE 715
Functions as component of the nuclear pore complex (NPC).
Arabidopsis thaliana (taxid: 3702)
>sp|Q8R480|NUP85_MOUSE Nuclear pore complex protein Nup85 OS=Mus musculus GN=Nup85 PE=1 SV=1 Back     alignment and function description
>sp|Q9BW27|NUP85_HUMAN Nuclear pore complex protein Nup85 OS=Homo sapiens GN=NUP85 PE=1 SV=1 Back     alignment and function description
>sp|Q4QQS8|NUP85_RAT Nuclear pore complex protein Nup85 OS=Rattus norvegicus GN=Nup85 PE=2 SV=1 Back     alignment and function description
>sp|Q3ZC98|NUP85_BOVIN Nuclear pore complex protein Nup85 OS=Bos taurus GN=NUP85 PE=2 SV=1 Back     alignment and function description
>sp|Q6DBY0|NUP85_DANRE Nuclear pore complex protein Nup85 OS=Danio rerio GN=nup85 PE=2 SV=1 Back     alignment and function description
>sp|Q6DK84|NUP85_XENTR Nuclear pore complex protein Nup85 OS=Xenopus tropicalis GN=nup85 PE=2 SV=1 Back     alignment and function description
>sp|Q68FJ0|NUP85_XENLA Nuclear pore complex protein Nup85 OS=Xenopus laevis GN=nup85 PE=2 SV=1 Back     alignment and function description
>sp|Q54NA0|NUP85_DICDI Nuclear pore complex protein nup85 OS=Dictyostelium discoideum GN=nup85 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query494
225429930 715 PREDICTED: nuclear pore complex protein 0.906 0.626 0.825 0.0
255550916 725 conserved hypothetical protein [Ricinus 0.906 0.617 0.803 0.0
224141733 720 predicted protein [Populus trichocarpa] 0.925 0.634 0.749 0.0
356563751 698 PREDICTED: nuclear pore complex protein 0.904 0.640 0.752 0.0
123720792 711 nucleoporin [Lotus japonicus] 0.906 0.630 0.741 0.0
449461321 720 PREDICTED: nuclear pore complex protein 0.979 0.672 0.678 0.0
13605599 713 AT4g32910/F26P21_30 [Arabidopsis thalian 0.906 0.628 0.716 0.0
18418112 716 uncharacterized protein [Arabidopsis tha 0.906 0.625 0.716 0.0
297802704 716 hypothetical protein ARALYDRAFT_491404 [ 0.906 0.625 0.709 0.0
326504984 731 predicted protein [Hordeum vulgare subsp 0.979 0.662 0.642 0.0
>gi|225429930|ref|XP_002283798.1| PREDICTED: nuclear pore complex protein Nup85 [Vitis vinifera] gi|296081842|emb|CBI20847.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/448 (82%), Positives = 418/448 (93%)

Query: 46  QTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWI 105
           +TENGLVEAVA+LISKMPRMRPELEAG+LGECFK KPDF+KAWEKWRAQI KL+CS+FW+
Sbjct: 268 ETENGLVEAVAILISKMPRMRPELEAGRLGECFKTKPDFIKAWEKWRAQITKLDCSSFWV 327

Query: 106 QCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKC 165
           QC HRQT+EGLRNMLQ+MLGNTNNLCT TCHW+ELYI+HFLY+RPFTVGLESM+ LAQKC
Sbjct: 328 QCDHRQTREGLRNMLQLMLGNTNNLCTSTCHWIELYISHFLYVRPFTVGLESMHALAQKC 387

Query: 166 IQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHE 225
           IQLKP+++SHRLMGL++GILGEN EVVLAECS+ FGPWMV HAIE+LTAGS QA+ +L E
Sbjct: 388 IQLKPISSSHRLMGLIVGILGENTEVVLAECSRAFGPWMVAHAIELLTAGSDQAEIILQE 447

Query: 226 ERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQ 285
            RDNLGGIS+EELHRL+YAQVLSSH LTWQIAPIYLTSC+KQGMGLLE+LLYKQPV  NQ
Sbjct: 448 GRDNLGGISIEELHRLIYAQVLSSHALTWQIAPIYLTSCMKQGMGLLEVLLYKQPVQDNQ 507

Query: 286 LLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFD 345
           +LLK  EICRLY+L+S+SS+IMKIAG+Y+WKHG+KGSGV+WLQQARDE RLNRIAQQ+FD
Sbjct: 508 MLLKTTEICRLYDLESISSSIMKIAGVYHWKHGRKGSGVFWLQQARDEFRLNRIAQQLFD 567

Query: 346 SVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAV 405
            VGRSISDE+F+QWEGLI+LLGSE K AGGL+FLH YRDFKKSL Q++ GKTTDAA+QAV
Sbjct: 568 FVGRSISDESFKQWEGLIELLGSESKIAGGLDFLHKYRDFKKSLQQVQVGKTTDAAQQAV 627

Query: 406 ESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRPDF 465
           ESLISLM+NP TPQRFWLPLLHDSLKLL+W+ERPLLN  QTNLLLNKLQELS+ARLRPDF
Sbjct: 628 ESLISLMRNPSTPQRFWLPLLHDSLKLLSWQERPLLNANQTNLLLNKLQELSMARLRPDF 687

Query: 466 IEADLPPHALSSVRLALATNLGRTTLEE 493
           IEA+LPP ALSSVRLALATNLGR  LEE
Sbjct: 688 IEANLPPQALSSVRLALATNLGRAILEE 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550916|ref|XP_002516506.1| conserved hypothetical protein [Ricinus communis] gi|223544326|gb|EEF45847.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224141733|ref|XP_002324219.1| predicted protein [Populus trichocarpa] gi|222865653|gb|EEF02784.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563751|ref|XP_003550123.1| PREDICTED: nuclear pore complex protein Nup85-like [Glycine max] Back     alignment and taxonomy information
>gi|123720792|dbj|BAF45348.1| nucleoporin [Lotus japonicus] Back     alignment and taxonomy information
>gi|449461321|ref|XP_004148390.1| PREDICTED: nuclear pore complex protein Nup85-like [Cucumis sativus] gi|449507257|ref|XP_004162978.1| PREDICTED: nuclear pore complex protein Nup85-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|13605599|gb|AAK32793.1|AF361625_1 AT4g32910/F26P21_30 [Arabidopsis thaliana] gi|25090220|gb|AAN72255.1| At4g32910/F26P21_30 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18418112|ref|NP_567908.1| uncharacterized protein [Arabidopsis thaliana] gi|75158853|sp|Q8RXH2.1|NUP85_ARATH RecName: Full=Nuclear pore complex protein Nup85; AltName: Full=Nucleoporin Nup85 gi|19698819|gb|AAL91145.1| putative protein [Arabidopsis thaliana] gi|332660742|gb|AEE86142.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297802704|ref|XP_002869236.1| hypothetical protein ARALYDRAFT_491404 [Arabidopsis lyrata subsp. lyrata] gi|297315072|gb|EFH45495.1| hypothetical protein ARALYDRAFT_491404 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|326504984|dbj|BAK02879.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query494
TAIR|locus:2123757716 AT4G32910 [Arabidopsis thalian 0.979 0.675 0.636 1.2e-170
UNIPROTKB|J3QL54544 NUP85 "Nuclear pore complex pr 0.765 0.694 0.266 1.8e-20
UNIPROTKB|B4DMQ3610 NUP85 "cDNA FLJ53138, highly s 0.765 0.619 0.266 2.5e-20
UNIPROTKB|Q9BW27656 NUP85 "Nuclear pore complex pr 0.765 0.576 0.266 2.9e-20
MGI|MGI:3046173656 Nup85 "nucleoporin 85" [Mus mu 0.765 0.576 0.273 2.9e-20
RGD|1311942656 Nup85 "nucleoporin 85" [Rattus 0.765 0.576 0.270 3.8e-20
UNIPROTKB|F1PFE9656 NUP85 "Uncharacterized protein 0.765 0.576 0.266 1.4e-18
UNIPROTKB|F1RVX6656 NUP85 "Uncharacterized protein 0.771 0.580 0.258 5.2e-18
UNIPROTKB|F1NRW5675 NUP85 "Uncharacterized protein 0.775 0.567 0.242 2e-17
UNIPROTKB|Q3ZC98656 NUP85 "Nuclear pore complex pr 0.771 0.580 0.251 3.2e-17
TAIR|locus:2123757 AT4G32910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1659 (589.1 bits), Expect = 1.2e-170, P = 1.2e-170
 Identities = 312/490 (63%), Positives = 388/490 (79%)

Query:     7 NNQEYWS-LSERITCLLFHLILFYDRMLYSFISYSLVVID--QTENGLVEAVAVLISKMP 63
             ++  YW  ++  ++     +++   ++L+   SY L  +   +TENGLVEAVAVLISKMP
Sbjct:   229 DDPRYWEVMASALSVGWLEIVV---KLLHLHGSYQLDQLGHRETENGLVEAVAVLISKMP 285

Query:    64 RMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIM 123
             RMRP+LE GK GEC  AKPDFMK  E+W++QI KLECS FW+QCAH QT+EGLRNML+IM
Sbjct:   286 RMRPQLEDGKFGECSAAKPDFMKTRERWQSQITKLECSAFWVQCAHHQTREGLRNMLKIM 345

Query:   124 LGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIG 183
             +GN + L   TC+WMEL+++H LY+RPFT GL+ M+ LAQKC+Q KP+  SH+L+ LLIG
Sbjct:   346 IGNADCLRAATCNWMELFVSHLLYLRPFTKGLDGMHSLAQKCVQSKPVNTSHKLLRLLIG 405

Query:   184 ILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVY 243
             ILGEN EVVLAECSK FG WMV HA+E+LTAGS + + L+HEE+  LGGI+MEELHRLVY
Sbjct:   406 ILGENTEVVLAECSKEFGSWMVAHAMELLTAGSEEGEVLVHEEQRKLGGINMEELHRLVY 465

Query:   244 AQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVS 303
             AQVLSSH LTWQIAPIYL SC KQG+GLLE+L Y+QPV  NQ+L+K+LEICRLYEL +VS
Sbjct:   466 AQVLSSHALTWQIAPIYLASCEKQGLGLLELLFYRQPVQENQMLIKSLEICRLYELSNVS 525

Query:   304 SNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLI 363
             + +MKI+G+++WKHG+KGSG++WLQQARDE  L+ IAQQ+FDSVG+S+SDE+ +QWEGL+
Sbjct:   526 AKLMKISGVHHWKHGRKGSGIFWLQQARDENCLSVIAQQLFDSVGKSLSDESLKQWEGLV 585

Query:   364 QLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWL 423
             +LLGSE + +GGL+FLH YRDFK+SL  + DGKT DAA +AVE L+SLMK+P TPQRFWL
Sbjct:   586 ELLGSESQISGGLDFLHKYRDFKRSLKVVHDGKTIDAAHEAVERLVSLMKSPSTPQRFWL 645

Query:   424 PLLHDSLKLLNWEERPXXXXXXXXXXXXXXXXXSIARLRPDFIEADLPPHALSSVRLALA 483
             PLLHDSLKLLNW ER                  SIARLRP FIE++L   A+ SVRLALA
Sbjct:   646 PLLHDSLKLLNWPERSLLNVTQTNLMLNKLQELSIARLRPGFIESELSAQAVGSVRLALA 705

Query:   484 TNLGRTTLEE 493
             TNLGR  LEE
Sbjct:   706 TNLGRAFLEE 715
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005515 "protein binding" evidence=IPI
GO:0005635 "nuclear envelope" evidence=IDA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
UNIPROTKB|J3QL54 NUP85 "Nuclear pore complex protein Nup85" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DMQ3 NUP85 "cDNA FLJ53138, highly similar to Homo sapiens pericentrin 1 (PCNT1), mRNA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BW27 NUP85 "Nuclear pore complex protein Nup85" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:3046173 Nup85 "nucleoporin 85" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311942 Nup85 "nucleoporin 85" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFE9 NUP85 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVX6 NUP85 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRW5 NUP85 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZC98 NUP85 "Nuclear pore complex protein Nup85" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXH2NUP85_ARATHNo assigned EC number0.71650.90680.6256yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
pfam07575564 pfam07575, Nucleopor_Nup85, Nup85 Nucleoporin 1e-120
>gnl|CDD|219472 pfam07575, Nucleopor_Nup85, Nup85 Nucleoporin Back     alignment and domain information 
 Score =  364 bits (936), Expect = e-120
 Identities = 125/414 (30%), Positives = 198/414 (47%), Gaps = 29/414 (7%)

Query: 45  DQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFW 104
             +  G+VE    L+  MP   PE           +  DF   W +W++++ +L+  +  
Sbjct: 179 LYSSQGMVEDAIDLLKSMPVYSPE---------GLSLTDFESTWREWKSEVLRLQ--SKK 227

Query: 105 IQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQK 164
           +Q    ++++GL ++L+I+ GN   +   +  W E  +   LY  P    LE ++  AQ 
Sbjct: 228 LQDGTFESRDGLEDLLKILAGNEEKILEYSSTWYEFLVGFLLYYIPTCKPLELLHEYAQL 287

Query: 165 CIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFG-PWMVTHAIEVLTAGSHQADTLL 223
           C+ + P+  ++ L  + + I+  +I  VL E S  F   W   H  ++L         L 
Sbjct: 288 CLSMFPVDVTNPLEQICLSIIENDIHNVLKELSSLFDDWWFAAHLADLL----EHKGLLE 343

Query: 224 HEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDH 283
           + E D+LG I+M E   L YA VL SH   WQ+A  YL  C  +G G LE+LL + P+  
Sbjct: 344 NSENDDLG-INMREFLLLEYASVLMSHKSLWQVAIDYLDLCPTEGRGALELLLPRIPLQT 402

Query: 284 NQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQM 343
           N    K L IC+ + L  V+  I K  G    K+ + GS + W  +A D A +  I+ ++
Sbjct: 403 NDDAEKLLSICKQWRLPDVAREICKTLGQRALKNNRYGSALSWFIRAGDYALVTHISWRL 462

Query: 344 FDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQ 403
           F       S E  +  E +I+ LGS    +  L FL  YR+F +   +           +
Sbjct: 463 F----EEYSSEGEKLDEDVIENLGSGMFLSPRLSFLAKYREFFRLYRE-------GDFLK 511

Query: 404 AVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQELS 457
           A E L+SL++ P  P+ FW  LL D L LL  +E  + +  QT  LLN L++L 
Sbjct: 512 AAELLVSLIEFPILPKSFWPLLLTDLLPLLELKE-VIFSEEQTYTLLNCLEKLL 564

A family of nucleoporins conserved from yeast to human. THe nuclear pore complex is a large assembly composed of two essential complexes: the heptameric Nup84 complex and the heteromeric Nic96-containing complex. The Nup84 complex is composed of one copy each of Nup84, Nup85, Nup120, Nup133, Nup145C, Sec13, and Seh1. The structure of a complex of Nup85 and Seh1 was solved. The N-terminus of Nup85 is inserted and forms a three-stranded blade that completes the Seh1 6-bladed beta-propeller in trans. Following its N-terminal insertion blade, Nup85 forms a compact cuboid structure composed of 20 helices, with two distinct modules, referred to as crown and trunk. Length = 564

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 494
PF07575566 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 100.0
KOG2271678 consensus Nuclear pore complex component (sc Nup85 100.0
PF12110290 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup 98.1
PF04121697 Nup84_Nup100: Nuclear pore protein 84 / 107 ; Inte 97.8
KOG1964800 consensus Nuclear pore complex, rNup107 component 96.93
KOG2168835 consensus Cullins [Cell cycle control, cell divisi 94.89
PF04097613 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 93.16
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human Back     alignment and domain information 
Probab=100.00  E-value=2e-91  Score=762.74  Aligned_cols=421  Identities=31%  Similarity=0.527  Sum_probs=239.6

Q ss_pred             ccCCC-CCchHhHHHHHHHhhcchHHHHHHHhhccCcchhhhhhhhhHHHHHHHHHHHhCCCCCcccccccccccccchh
Q 011083            4 SLFNN-QEYWSLSERITCLLFHLILFYDRMLYSFISYSLVVIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKP   82 (494)
Q Consensus         4 ~~~~h-p~fW~~v~~l~~vlrG~~~~a~~lL~~h~~~~~~~~~~~~~~~~~~~~~lL~~~P~~~~~~~~~~~g~~~~~~~   82 (494)
                      ++++| |+||++|+++  |+||++++|+++|+.|+++...    +.+++++.+++||++||+++++++        .+.+
T Consensus       143 ~p~~~~p~FW~~v~~l--vlrG~~~~a~~lL~~~s~~~~~----~~~~~~~~~~~LL~~~P~~~~~~~--------~s~~  208 (566)
T PF07575_consen  143 PPYEHDPDFWDYVQRL--VLRGLFDQARQLLRLHSSYQSY----SLQSAFEALIQLLSSMPRYRPNSG--------QSES  208 (566)
T ss_dssp             HSCSGSHHHHHHHHHH--HHTT-HHHHHHHH-TTTTTTTH----HHHHHHHHHHHHHTT--------------------S
T ss_pred             CCCccchhHHHHHHHH--HHcCCHHHHHHHHHhcccccch----hHHHHHHHHHHHHHhCCCccccch--------hhhH
Confidence            46777 9999999999  9999999999999889988753    246899999999999999997653        4889


Q ss_pred             HHHHHHHHHHHHHHhhhcccchhhhccccchHhHHHHHHHHcCCchHHhhhhchHHHHHHHHhhhccCCccccchHHHHH
Q 011083           83 DFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLA  162 (494)
Q Consensus        83 eF~~~w~~W~~~~~~L~~~~~~~~~~~~~~~~~l~~l~~IL~G~~~~i~~~~~~WyE~~~a~~ly~~P~~~~~e~l~~~~  162 (494)
                      +|..+|++||.+|+++...  +.++..+.++++|+++++||+||+++|+++|+||||+++|+++|++|++++.|.+++++
T Consensus       209 ~f~~~~~~W~~~~~~l~~~--~~~~~~~~~~~~L~~l~~Il~G~~~~i~~~~~~WyE~~~a~~ly~~P~~~~~e~l~~~a  286 (566)
T PF07575_consen  209 EFSSQWREWKSECRRLRSS--SLQDGPFEIRENLEDLLKILLGDEDTILEYSQDWYEALVALLLYVDPTCKPFELLHEYA  286 (566)
T ss_dssp             S-HHHHHHHHHHHHHHHHH--S---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHHHHHHHHHT------TTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH--hhccCchhhHHHHHHHHHHHCCCHHHHHHHhCcHHHHHHHhheeeCCCcchhhhHHHHH
Confidence            9999999999999986544  34445567899999999999999999999999999999999999999999986699999


Q ss_pred             HHHHHhCCCCcCChhHHHHHHHHcCCHHHHHHHHhhccCc-chHHHHHHHHHcCCCcccchhhhhcccCCCCchhHHHHH
Q 011083          163 QKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGP-WMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRL  241 (494)
Q Consensus       163 ~~~~~~~p~~~~~~ld~~~~~i~~~d~~~vl~~~~~~~d~-W~aaHl~dLL~~~g~~~~~~l~~~~~~~~~~~lre~~ll  241 (494)
                      +.|++.+|+++++++|+++.+||+||+.+||+.|+..+|+ ||+||++|||+++|.+.    ...+.+.++.++|||+++
T Consensus       287 ~~~~~~~~~~~~~~~e~~~~~i~~~d~~~vL~~~~~~~~~~w~aahladLl~~~g~L~----~~~~~~~~~~~lre~~ll  362 (566)
T PF07575_consen  287 QSCLEEFPPDSTNPLEQILLAIFEGDIESVLKEISSLFDDWWFAAHLADLLEHKGLLE----DSEQEDFGGSSLREYLLL  362 (566)
T ss_dssp             HHHHHHS---TTSTTHHHHHHHHTS--GGGHHHHHHH--HHHHHHHHHHHHHHTTSS------SS-----TS-HHHHHHH
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHccCHHHHHHHHHHHccchhHHHHHHHHHHhcCccc----cccccccccccHHHHHHH
Confidence            9999999999999999999999999999999999877765 99999999999999632    123333435899999999


Q ss_pred             HHHHHHccCCCchhhhhHHHHhchHhhHHHHHHhhccCCCCcHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCcch
Q 011083          242 VYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKG  321 (494)
Q Consensus       242 ~YA~~L~s~~~LW~vai~YL~~c~~~g~~~i~~lL~r~P~~s~~~~~k~l~iC~~~~L~~~a~~I~k~~g~~~~~~g~~g  321 (494)
                      +||++|++|++|||||++||++||++|+.+|+++|+|+|++||++++|++++|+++||++++++|||++|++++++|+||
T Consensus       363 ~YA~~L~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g  442 (566)
T PF07575_consen  363 EYASSLMSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYG  442 (566)
T ss_dssp             HHHHHHHT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhccCCcchhhchHHHHHhhCCCCCCCCcchhhHhHHHHHHHHhhhccCCchHHH
Q 011083          322 SGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAA  401 (494)
Q Consensus       322 ~Al~w~~ra~D~~~v~~iad~ll~~y~~~~s~~~~~~~~~ll~~l~~~~~~~~~L~fL~~Y~~f~~~~~~~~~~~~~~~~  401 (494)
                      +||.|++||||...|++|+|.+|++|+.+|  ++.  .+++|+++++++..+++|+||++|++||++|++   |+    +
T Consensus       443 ~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~--~~~--~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~---~~----~  511 (566)
T PF07575_consen  443 EALSWFIRAGDYSLVTRIADRLLEEYCNNG--EPL--DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDE---GD----F  511 (566)
T ss_dssp             HHHHHHH-------------------------------------------------------------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhcCC--Ccc--cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhh---hh----H
Confidence            999999999999999999999999999885  333  258999999999999999999999999999966   44    4


Q ss_pred             HHHHHHHHHhhcCCCCCccchHHhHHHHHhhhccCCCCcccHHHHHHHHHHHHHH
Q 011083          402 RQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQEL  456 (494)
Q Consensus       402 ~~Aa~~Lv~Ll~~~~~Pk~fw~~LL~dalpLLe~~~~~~fs~~~t~~Ll~~LEe~  456 (494)
                      ++|+++||+||+++++||+||++||+|++|||+.++ ++|+++|||+||+|||++
T Consensus       512 ~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~lplL~~~~-~~f~~~~~~~ll~~Le~~  565 (566)
T PF07575_consen  512 REAASLLVSLLKSPIAPKSFWPLLLCDALPLLESDE-VIFSSSDTYELLRCLEEL  565 (566)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHhCCCC-CccCHHHHHHHHHHHHHh
Confidence            569999999999999999999999999999999976 889999999999999985

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
>KOG2271 consensus Nuclear pore complex component (sc Nup85) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex Back     alignment and domain information
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog Back     alignment and domain information
>KOG1964 consensus Nuclear pore complex, rNup107 component (sc Nup84) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
3f3f_C570 Nucleoporin NUP85; structural protein, protein com 1e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B Length = 570 Back     alignment and structure
 Score =  102 bits (256), Expect = 1e-23
 Identities = 37/271 (13%), Positives = 80/271 (29%), Gaps = 25/271 (9%)

Query: 83  DFMKAWEKWRAQIAKLECSTFWIQCAHR-QTQEGLRNMLQIMLGNTNNLCTLTCHWMELY 141
           D    + +W+  + KL  +          + ++ + + L ++ GN   +   +  W E +
Sbjct: 298 DSSSTFREWKNLVLKLSQAFGSSATDISGELRDYIEDFLLVIGGNQRKILQYSRTWYESF 357

Query: 142 IAHFLYIRPFTVGLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFG 201
               LY  P    LE      Q  ++   +  ++      + I+   I  +L        
Sbjct: 358 CGFLLYYIP---SLELSAEYLQMSLEANVVDITNDWEQPCVDIISGKIHSILPVMES-LD 413

Query: 202 PWMVTHAIEVLTAG----------------SHQADTLLHEERDNLGGISMEELHRLVYAQ 245
                    +  A                 S++ + +L +      G++   L+   +  
Sbjct: 414 SCTAAFTAMICEAKGLIENIFEGEKNSDDYSNEDNEMLEDLFSYRNGMASYMLNSFAFEL 473

Query: 246 VLSSHPLTWQIAPIYL----TSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDS 301
                   W +A   +    T        ++  LL   P   N  +   L IC  + L  
Sbjct: 474 CSLGDKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPE 533

Query: 302 VSSNIMKIAGMYNWKHGKKGSGVYWLQQARD 332
           ++  I    G            +    +A  
Sbjct: 534 IAKEIYTTLGNQMLSAHNIIESIANFSRAGK 564
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query494
3f3f_C570 Nucleoporin NUP85; structural protein, protein com 100.0
3bg1_B442 Nucleoporin NUP145; NPC, transport, WD repeat, aut 97.67
3jro_A753 Fusion protein of protein transport protein SEC13 97.38
3iko_C460 Nucleoporin NUP84; NPC, transport, WD repeat, auto 95.61
2qx5_A661 Nucleoporin NIC96; mRNA transport, nuclear pore co 93.79
2pm7_A399 Protein WEB1, protein transport protein SEC31; bet 92.53
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B Back     alignment and structure
Probab=100.00  E-value=1.4e-64  Score=535.52  Aligned_cols=308  Identities=14%  Similarity=0.170  Sum_probs=241.5

Q ss_pred             cccCCCCCchHhHHHHHHHhhcchHHHHHHHhhccCc-chh-hhhhhhhHHHHHHHHHHHhCCCCCcccccccccccccc
Q 011083            3 LSLFNNQEYWSLSERITCLLFHLILFYDRMLYSFISY-SLV-VIDQTENGLVEAVAVLISKMPRMRPELEAGKLGECFKA   80 (494)
Q Consensus         3 ~~~~~hp~fW~~v~~l~~vlrG~~~~a~~lL~~h~~~-~~~-~~~~~~~~~~~~~~~lL~~~P~~~~~~~~~~~g~~~~~   80 (494)
                      -+||+||+||++|+++  |+||+|+||+++|+ |+.+ ... .......++++.++.||++||++++             
T Consensus       237 ~~P~eHp~FW~~v~~L--vLRGl~~qA~~~L~-~s~~~~~L~~~~~~~~~~i~dli~LL~~yP~~S~-------------  300 (570)
T 3f3f_C          237 KKVFETQYFWKLLNQL--VLRGLLSQAIGCIE-RSDLLPYLSDTCAVSFDAVSDSIELLKQYPKDSS-------------  300 (570)
T ss_dssp             SSSSCSHHHHHHHHHH--HHTTCHHHHHHHHT-TTTTTHHHHHSCHHHHHHHHHHHHHHTTCCSSCH-------------
T ss_pred             CCCCCCccHHHHHHHH--HHcccHHHHHHHHH-hcccchhhcccChHHHHHHHHHHHHHHhCCCCch-------------
Confidence            5799999999999999  99999999999999 5544 111 1113345678999999999998852             


Q ss_pred             hhHHHHHHHHHHHHHHh----hhcccchhhhccccchHhHHHHHHHHcCCchHHhhhhchHHHHHHHHhhhccCCccccc
Q 011083           81 KPDFMKAWEKWRAQIAK----LECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLE  156 (494)
Q Consensus        81 ~~eF~~~w~~W~~~~~~----L~~~~~~~~~~~~~~~~~l~~l~~IL~G~~~~i~~~~~~WyE~~~a~~ly~~P~~~~~e  156 (494)
                       .    +|++||..|.+    ++.+.|.+   ..+++++|+++++||+|++++|+++|+||||+++|+++|++|++++  
T Consensus       301 -~----~fr~WK~~~~e~r~~l~~~~~~i---~~ei~~~Ledll~Il~Gd~~~Il~~~~tWYEal~allLy~~Pt~k~--  370 (570)
T 3f3f_C          301 -S----TFREWKNLVLKLSQAFGSSATDI---SGELRDYIEDFLLVIGGNQRKILQYSRTWYESFCGFLLYYIPSLEL--  370 (570)
T ss_dssp             -H----HHHHHHHHHHHHHHHHHTSCCCS---CHHHHHHHHHHHHHHHTCHHHHHHTCSSHHHHHHHHHHHTCCCGGG--
T ss_pred             -H----HHHHHHHHHHHHHHHhccccccc---chHHHHHHHHHHHHHcCCHHHHHHHcccHHHHHhHheeeecCcccc--
Confidence             2    48899998854    44444321   1237899999999999999999999999999999999999999965  


Q ss_pred             hHHHHHHHHHHhCCCCcCChhHHHHHHHHcCCHHHHHHHHhhccCcchHHHHHHHHHcCCCcccch--------hhhhc-
Q 011083          157 SMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTL--------LHEER-  227 (494)
Q Consensus       157 ~l~~~~~~~~~~~p~~~~~~ld~~~~~i~~~d~~~vl~~~~~~~d~W~aaHl~dLL~~~g~~~~~~--------l~~~~-  227 (494)
                       .++|++.|++..|+|.++.+|.++++||+||+.+||+.++ .+|+|++||++|||+++|++.+.+        +++.+ 
T Consensus       371 -~~~y~q~al~~~p~d~~~~~E~~~~~i~egni~~VL~~lq-~ld~~~AA~vAdLle~~GlLe~~~~~~~~~~~l~~~~~  448 (570)
T 3f3f_C          371 -SAEYLQMSLEANVVDITNDWEQPCVDIISGKIHSILPVME-SLDSCTAAFTAMICEAKGLIENIFEGEKNSDDYSNEDN  448 (570)
T ss_dssp             -HHHHHHHHHHHSCCCTTSSSHHHHHHHHTTCCGGGHHHHH-HHCHHHHHHHHHHHHHHTSSCCCCCC------------
T ss_pred             -cHHHHHHHHHhCCCCcccHHHHHHHHHHccCHHHHHHHHH-HhhHHHHHHHHHHHHHhCcccchhhhcccccccccccc
Confidence             5689999999999999999999999999999999999995 889999999999999999865321        01111 


Q ss_pred             ---cc-C-CCCchhHHHHHHHHHH--HccCCCchhhhhHHHHhchH----hhHHHHHHhhccCCCCcHHHHHHHHHHHHh
Q 011083          228 ---DN-L-GGISMEELHRLVYAQV--LSSHPLTWQIAPIYLTSCIK----QGMGLLEMLLYKQPVDHNQLLLKNLEICRL  296 (494)
Q Consensus       228 ---~~-~-~~~~lre~~ll~YA~~--L~s~~~LW~vai~YL~~c~~----~g~~~i~~lL~r~P~~s~~~~~k~l~iC~~  296 (494)
                         +. + .+.+||||++++||.+  ++++++||||||+||++||.    .||.+|+++|+|+|++|+++++|++++|++
T Consensus       449 ~~~d~l~s~~~~l~eyLL~~~a~~~~~~~~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~  528 (570)
T 3f3f_C          449 EMLEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVE  528 (570)
T ss_dssp             --CCCSSSSSSCHHHHHHHHHHHHHHTSCCTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHH
T ss_pred             ccHhhhhcCcchHHHHHHHHHHhhcccccCCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence               11 2 4789999999999999  99999999999999999986    599999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHHHHHhcCcchHHHHHHHHcCCHHHHHH
Q 011083          297 YELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNR  338 (494)
Q Consensus       297 ~~L~~~a~~I~k~~g~~~~~~g~~g~Al~w~~ra~D~~~v~~  338 (494)
                      +||+++|++||+++|++++++|++|+||+||+|||+.++|++
T Consensus       529 l~L~~~ar~I~k~~g~k~l~~g~~geAL~~f~rA~~~~~Vk~  570 (570)
T 3f3f_C          529 WRLPEIAKEIYTTLGNQMLSAHNIIESIANFSRAGKYELVKS  570 (570)
T ss_dssp             HTCHHHHHHHHHHHHC--------------------------
T ss_pred             CCChHHHHHHHHHHHHHHHHCccHHHHHHHHHHcCChhhccC
Confidence            999999999999999999999999999999999999999974
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C Back     alignment and structure
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A Back     alignment and structure
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00