Citrus Sinensis ID: 011097

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---

MAQSTAVSPCSSINLAFHAPKRGSLLYHDKLSFPRKLHSFQEFGSRASELNGRAVVSSTCNVIRACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLERGI

cccccccccccccccccccccccccEEcccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEEEEccccccccHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccEEEEccccccccccHHHHcccccccccEEEEEEcccccccHHHHHHHHHHcccccccccccccccccccHHHHHcccccccccccccHHHHHcccccccccccccEEEEEEEEcEEEEEccccccHHHHHHHHHHHHHcccccccEEEcccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccEEEEEEEEEEEcccEEEEcccccccccccccccccccccccccccccHHHHccHHHHHHHHHHccc

cccccEEcccccccEcEcccccccccccccccccccccHHHHHccccccccccEEEEcccEEEcccccHHHHEEEEccccEEEcccccccccccccEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEcccccHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccEEEEEEHHHcccccEEEEcccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccHHHHHHcccHHccccccEEEEEEEEcccEEEEccccccHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEEcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccEEEEEEEEccEEEEEcccccccccccHccccccccccHHHHHHHHHHccccHHHHHHHHccc

maqstavspcssinlafhapkrgsllyhdklsfprklhSFQEFGSraselngravVSSTCNVIRACEPKAIQALLSserevesapksgggrrgkLNKVVLAYSggldtsvivpwlrenygcevVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAvahgctgkgndQVRFELTFfalnpelnvvapwrewdiQGREDAIEYAkkhnvpvpvtkksiysrdrnlwhlshegdiledpenepkkdmymmsvdpedapnqpeyieigivsgipvsvngkklspASLLAELNEiggrhgigrIDMVENRLVGmksrgvyetpggtILFSAVQELESltldretmQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYkgsvsvtgrtspkslyrqdissfesgqiydqaDAAGFIRLYGLPMRVRAMLERGI

maqstavspcssiNLAFHAPKRGSLLYHDKLSFPRKLHSFQEFGSRASELNGRAVVSSTCNVIRACEPKAIQAllsserevesapksgggrrgklnKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIeyakkhnvpvpvtkksiysRDRNLWHLshegdiledpenePKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLAELneiggrhgigrIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENitktttgsvtlklykgsvsvtgrtspkslyrqDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLERGI

************INLAFHAPKRGSLLYHDKLSFPRKLHSFQEFGS*ASELNGRAVVSSTCNVIRACEPKAIQAL********************LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSH*******************************YIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTG******LYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRA******

*************NLAFHAPKRGSLLYHDKLSF*****************************************************************VLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAM*E***

**********SSINLAFHAPKRGSLLYHDKLSFPRKLHSFQEFGSRASELNGRAVVSSTCNVIRACEPKAIQALL****************RGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLERGI

****TAVSPCSSINLAFHAPKRGSLLYHDKLSFPRKLHSFQEFGSRASELNGRAVVSSTCNVIRACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLER**

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		493	2.2.26 [Sep-21-2011]
Q9SZX3		494	Argininosuccinate synthas	yes	no	0.965	0.963	0.800	0.0
Q3A9W5		401	Argininosuccinate synthas	yes	no	0.799	0.982	0.643	1e-153
A5V0J9		407	Argininosuccinate synthas	yes	no	0.803	0.972	0.628	1e-153
Q24ZG8		409	Argininosuccinate synthas	yes	no	0.803	0.968	0.627	1e-151
A4J173		401	Argininosuccinate synthas	yes	no	0.803	0.987	0.642	1e-150
B8FWX2		401	Argininosuccinate synthas	yes	no	0.803	0.987	0.627	1e-150
A7NPB0		402	Argininosuccinate synthas	yes	no	0.803	0.985	0.608	1e-148
Q8GDU2		408	Argininosuccinate synthas	N/A	no	0.813	0.982	0.599	1e-145
A5D510		401	Argininosuccinate synthas	yes	no	0.803	0.987	0.599	1e-143
Q8R7C2		410	Argininosuccinate synthas	yes	no	0.801	0.963	0.598	1e-143

>sp\|Q9SZX3\|ASSY_ARATH Argininosuccinate synthase, chloroplastic OS=Arabidopsis thaliana GN=At4g24830 PE=2 SV=3	Back alignment and function desciption

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/477 (80%), Positives = 423/477 (88%), Gaps = 1/477 (0%)

Query: 15  LAFHAPKRGSLLYHDKLSFPRKLHSFQEFGSRASELNGRAVVSSTCNVIRACEPKAIQAL 74
           L   +   GSL   + ++ P+    FQE   + S+L G AVV+      R+C+ +AI+A+
Sbjct: 17  LVIRSSHNGSLKCQN-VAVPKTTSQFQELSLKRSQLVGNAVVTGHVTGSRSCKNQAIRAV 75

Query: 75  LSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGI 134
           LS +    +      G RGKL KVVLAYSGGLDTSVIVPWL+ENYGCEVVCFTADVGQGI
Sbjct: 76  LSGDGTALTTDSKEAGLRGKLKKVVLAYSGGLDTSVIVPWLKENYGCEVVCFTADVGQGI 135

Query: 135 KELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKA 194
           KEL+GLE+KAKASGA QLVVKDL EEFVKD+IFPCLRAGAIYERKYLLGTSMARPVIAKA
Sbjct: 136 KELEGLEQKAKASGASQLVVKDLTEEFVKDFIFPCLRAGAIYERKYLLGTSMARPVIAKA 195

Query: 195 MVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAK 254
           MVDVA EVGADAVAHGCTGKGNDQVRFELTFF+LNPEL VVAPWREW+IQGREDAIEYAK
Sbjct: 196 MVDVAAEVGADAVAHGCTGKGNDQVRFELTFFSLNPELKVVAPWREWEIQGREDAIEYAK 255

Query: 255 KHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEI 314
           KHNVPVPVTKKSIYSRDRNLWHLSHEGD+LEDP NEPKKDMYMMSVDPEDAP+QPEYIEI
Sbjct: 256 KHNVPVPVTKKSIYSRDRNLWHLSHEGDLLEDPANEPKKDMYMMSVDPEDAPDQPEYIEI 315

Query: 315 GIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTIL 374
           GI SG+PV++NGK LSPA+LLAELN IGG+HGIGRIDMVENRLVGMKSRGVYETPGGTIL
Sbjct: 316 GIESGLPVALNGKALSPATLLAELNTIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTIL 375

Query: 375 FSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVT 434
           F+AVQELESLTLDRE++QVKD+LALKYAE+VYAGRWFDPLRES+DAFME IT+TTTGSVT
Sbjct: 376 FAAVQELESLTLDRESIQVKDTLALKYAEMVYAGRWFDPLRESMDAFMEKITETTTGSVT 435

Query: 435 LKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLER 491
           LKLYKGSVSVTGR SP SLYRQDISSFE  +IY+QADAAGFIRLYGLPM++RAML++
Sbjct: 436 LKLYKGSVSVTGRQSPNSLYRQDISSFEGSEIYNQADAAGFIRLYGLPMKIRAMLKK 492

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 5

>sp\|Q3A9W5\|ASSY_CARHZ Argininosuccinate synthase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=argG PE=3 SV=1	Back alignment and function description

>sp\|A5V0J9\|ASSY_ROSS1 Argininosuccinate synthase OS=Roseiflexus sp. (strain RS-1) GN=argG PE=3 SV=1	Back alignment and function description

>sp\|Q24ZG8\|ASSY_DESHY Argininosuccinate synthase OS=Desulfitobacterium hafniense (strain Y51) GN=argG PE=3 SV=1	Back alignment and function description

>sp\|A4J173\|ASSY_DESRM Argininosuccinate synthase OS=Desulfotomaculum reducens (strain MI-1) GN=argG PE=3 SV=1	Back alignment and function description

>sp\|B8FWX2\|ASSY_DESHD Argininosuccinate synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=argG PE=3 SV=1	Back alignment and function description

>sp\|A7NPB0\|ASSY_ROSCS Argininosuccinate synthase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=argG PE=3 SV=1	Back alignment and function description

>sp\|Q8GDU2\|ASSY_HELMO Argininosuccinate synthase (Fragment) OS=Heliobacillus mobilis GN=argG PE=3 SV=1	Back alignment and function description

>sp\|A5D510\|ASSY_PELTS Argininosuccinate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=argG PE=3 SV=1	Back alignment and function description

>sp\|Q8R7C2\|ASSY_THETN Argininosuccinate synthase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=argG PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		493
255560303		492	argininosuccinate synthase, putative [Ri	0.975	0.977	0.850	0.0
225456274		497	PREDICTED: argininosuccinate synthase, c	1.0	0.991	0.822	0.0
224097614		470	predicted protein [Populus trichocarpa]	0.949	0.995	0.845	0.0
449469631		494	PREDICTED: argininosuccinate synthase, c	0.995	0.993	0.794	0.0
255575811		490	argininosuccinate synthase, putative [Ri	0.979	0.985	0.832	0.0
356514001		476	PREDICTED: argininosuccinate synthase, c	0.965	1.0	0.805	0.0
255636366		476	unknown [Glycine max]	0.965	1.0	0.803	0.0
297799514		495	arginosuccinate synthase family [Arabido	0.965	0.961	0.813	0.0
22328910		494	argininosuccinate synthase [Arabidopsis	0.965	0.963	0.800	0.0
356513082		483	PREDICTED: argininosuccinate synthase, c	0.963	0.983	0.793	0.0

>gi\|255560303\|ref\|XP_002521168.1\| argininosuccinate synthase, putative [Ricinus communis] gi\|223539615\|gb\|EEF41199.1\| argininosuccinate synthase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/483 (85%), Positives = 441/483 (91%), Gaps = 2/483 (0%)

Query: 13  INLAFHAPKRGSLLYHDKLSFPRKLHS-FQEFGSRASELNGRAVVSSTCNVIRACEPKAI 71
           +NLAFH  K    L   KLS  +K  + FQ+ G++ SEL G A + S   ++R C  KA+
Sbjct: 10  LNLAFHGSKGDVFLQSHKLSSIKKSPALFQKLGAKRSELQGDAFLGSKRIILRTCRNKAV 69

Query: 72  QALLSSEREVE-SAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADV 130
           QA+LSS+REVE S      G RGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADV
Sbjct: 70  QAVLSSDREVEFSEATKNEGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADV 129

Query: 131 GQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPV 190
           GQG+KEL+GLEEKAKASGACQLVVKDL+EEFV+DYIFPCLRAGAIYERKYLLGTSMARPV
Sbjct: 130 GQGLKELEGLEEKAKASGACQLVVKDLQEEFVRDYIFPCLRAGAIYERKYLLGTSMARPV 189

Query: 191 IAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAI 250
           IAKAMVDVA+EVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDI+GREDAI
Sbjct: 190 IAKAMVDVAKEVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIKGREDAI 249

Query: 251 EYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPE 310
           EYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP NEPKKDMYMMSVDPE+APNQPE
Sbjct: 250 EYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKKDMYMMSVDPENAPNQPE 309

Query: 311 YIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPG 370
           Y+EIGIVSG+PVSVNGK+LSPASLL+ LNEIGGRHGIGRIDMVENRLVGMKSRGVYETPG
Sbjct: 310 YVEIGIVSGLPVSVNGKQLSPASLLSHLNEIGGRHGIGRIDMVENRLVGMKSRGVYETPG 369

Query: 371 GTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTT 430
           GTILF+A +ELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRES+DAFME I++ TT
Sbjct: 370 GTILFTAARELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESMDAFMEKISEKTT 429

Query: 431 GSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLE 490
           GSVTLKLYKGSVSVT RTSP SLYRQDISSFESG+IYDQADAAGFIRLYGLPM+VRAMLE
Sbjct: 430 GSVTLKLYKGSVSVTSRTSPYSLYRQDISSFESGKIYDQADAAGFIRLYGLPMKVRAMLE 489

Query: 491 RGI 493
            GI
Sbjct: 490 NGI 492

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225456274\|ref\|XP_002283539.1\| PREDICTED: argininosuccinate synthase, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224097614\|ref\|XP_002311011.1\| predicted protein [Populus trichocarpa] gi\|222850831\|gb\|EEE88378.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449469631\|ref\|XP_004152522.1\| PREDICTED: argininosuccinate synthase, chloroplastic-like [Cucumis sativus] gi\|449503684\|ref\|XP_004162125.1\| PREDICTED: argininosuccinate synthase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255575811\|ref\|XP_002528804.1\| argininosuccinate synthase, putative [Ricinus communis] gi\|223531757\|gb\|EEF33577.1\| argininosuccinate synthase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356514001\|ref\|XP_003525696.1\| PREDICTED: argininosuccinate synthase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|255636366\|gb\|ACU18522.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|297799514\|ref\|XP_002867641.1\| arginosuccinate synthase family [Arabidopsis lyrata subsp. lyrata] gi\|297313477\|gb\|EFH43900.1\| arginosuccinate synthase family [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|22328910|ref|NP_194214.2| argininosuccinate synthase [Arabidopsis thaliana] gi|78099761|sp|Q9SZX3.3|ASSY_ARATH RecName: Full=Argininosuccinate synthase, chloroplastic; AltName: Full=Citrulline--aspartate ligase; Flags: Precursor gi|17529036|gb|AAL38728.1| putative argininosuccinate synthase [Arabidopsis thaliana] gi|20259085|gb|AAM14258.1| putative argininosuccinate synthase [Arabidopsis thaliana] gi|332659568|gb|AEE84968.1| argininosuccinate synthase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|356513082\|ref\|XP_003525243.1\| PREDICTED: argininosuccinate synthase, chloroplastic [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		493
TAIR\|locus:2126803		494	AT4G24830 [Arabidopsis thalian	0.993	0.991	0.789	7.7e-206
TIGR_CMR\|CHY_2260		401	CHY_2260 "argininosuccinate sy	0.799	0.982	0.643	3.9e-140
UNIPROTKB\|Q9KNT8		404	argG "Argininosuccinate syntha	0.801	0.977	0.554	1.2e-122
TIGR_CMR\|VC_2642		404	VC_2642 "argininosuccinate syn	0.801	0.977	0.554	1.2e-122
TIGR_CMR\|SO_0278		407	SO_0278 "argininosuccinate syn	0.799	0.968	0.562	2.5e-120
TIGR_CMR\|CPS_0463		418	CPS_0463 "argininosuccinate sy	0.805	0.949	0.550	6e-119
TIGR_CMR\|GSU_0153		406	GSU_0153 "argininosuccinate sy	0.801	0.972	0.541	4.2e-118
TIGR_CMR\|CJE_0767		406	CJE_0767 "argininosuccinate sy	0.789	0.958	0.550	4.5e-114
TIGR_CMR\|ECH_0680		393	ECH_0680 "argininosuccinate sy	0.789	0.989	0.540	2.6e-111
TIGR_CMR\|SPO_0018		409	SPO_0018 "argininosuccinate sy	0.803	0.968	0.519	1.5e-106

TAIR\|locus:2126803 AT4G24830 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1991 (705.9 bits), Expect = 7.7e-206, P = 7.7e-206
 Identities = 389/493 (78%), Positives = 433/493 (87%)

Query:     1 MAQSTAVS-PCSSIN-LAFHAPKRGSLLYHDKLSFPRKLHSFQEFGSRASELNGRAVVSS 58
             MA+ +A S P SS + L   +   GSL   + ++ P+    FQE   + S+L G AVV+ 
Sbjct:     1 MAEISATSFPSSSSSALVIRSSHNGSLKCQN-VAVPKTTSQFQELSLKRSQLVGNAVVTG 59

Query:    59 TCNVIRACEPKAIQALLSSEREVESAPKSGGGRRGKLNKVVLAYSGGLDTSVIVPWLREN 118
                  R+C+ +AI+A+LS +    +      G RGKL KVVLAYSGGLDTSVIVPWL+EN
Sbjct:    60 HVTGSRSCKNQAIRAVLSGDGTALTTDSKEAGLRGKLKKVVLAYSGGLDTSVIVPWLKEN 119

Query:   119 YGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYER 178
             YGCEVVCFTADVGQGIKEL+GLE+KAKASGA QLVVKDL EEFVKD+IFPCLRAGAIYER
Sbjct:   120 YGCEVVCFTADVGQGIKELEGLEQKAKASGASQLVVKDLTEEFVKDFIFPCLRAGAIYER 179

Query:   179 KYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPW 238
             KYLLGTSMARPVIAKAMVDVA EVGADAVAHGCTGKGNDQVRFELTFF+LNPEL VVAPW
Sbjct:   180 KYLLGTSMARPVIAKAMVDVAAEVGADAVAHGCTGKGNDQVRFELTFFSLNPELKVVAPW 239

Query:   239 REWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMM 298
             REW+IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGD+LEDP NEPKKDMYMM
Sbjct:   240 REWEIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDLLEDPANEPKKDMYMM 299

Query:   299 SVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHGIGRIDMVENRLV 358
             SVDPEDAP+QPEYIEIGI SG+PV++NGK LSPA+LLAELN IGG+HGIGRIDMVENRLV
Sbjct:   300 SVDPEDAPDQPEYIEIGIESGLPVALNGKALSPATLLAELNTIGGKHGIGRIDMVENRLV 359

Query:   359 GMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESI 418
             GMKSRGVYETPGGTILF+AVQELESLTLDRE++QVKD+LALKYAE+VYAGRWFDPLRES+
Sbjct:   360 GMKSRGVYETPGGTILFAAVQELESLTLDRESIQVKDTLALKYAEMVYAGRWFDPLRESM 419

Query:   419 DAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRL 478
             DAFME IT+TTTGSVTLKLYKGSVSVTGR SP SLYRQDISSFE  +IY+QADAAGFIRL
Sbjct:   420 DAFMEKITETTTGSVTLKLYKGSVSVTGRQSPNSLYRQDISSFEGSEIYNQADAAGFIRL 479

Query:   479 YGLPMRVRAMLER 491
             YGLPM++RAML++
Sbjct:   480 YGLPMKIRAMLKK 492

GO:0004055 "argininosuccinate synthase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006526 "arginine biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006567 "threonine catabolic process" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TIGR_CMR\|CHY_2260 CHY_2260 "argininosuccinate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KNT8 argG "Argininosuccinate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2642 VC_2642 "argininosuccinate synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_0278 SO_0278 "argininosuccinate synthase" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_0463 CPS_0463 "argininosuccinate synthase" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_0153 GSU_0153 "argininosuccinate synthase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CJE_0767 CJE_0767 "argininosuccinate synthase" [Campylobacter jejuni RM1221 (taxid:195099)]	Back alignment and assigned GO terms

TIGR_CMR\|ECH_0680 ECH_0680 "argininosuccinate synthase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_0018 SPO_0018 "argininosuccinate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C3LRV3	ASSY_VIBCM	6, ., 3, ., 4, ., 5	0.5567	0.7870	0.9603	yes	no
Q15X83	ASSY_PSEA6	6, ., 3, ., 4, ., 5	0.5572	0.8154	0.9757	yes	no
B0K4D8	ASSY_THEPX	6, ., 3, ., 4, ., 5	0.5964	0.7971	0.9585	yes	no
B1H0L3	ASSY_UNCTG	6, ., 3, ., 4, ., 5	0.5575	0.8093	0.9661	yes	no
Q8GDU2	ASSY_HELMO	6, ., 3, ., 4, ., 5	0.5995	0.8133	0.9828	N/A	no
A5V0J9	ASSY_ROSS1	6, ., 3, ., 4, ., 5	0.6281	0.8032	0.9729	yes	no
P59605	ASSY_VIBPA	6, ., 3, ., 4, ., 5	0.5670	0.7870	0.9603	yes	no
Q3A9W5	ASSY_CARHZ	6, ., 3, ., 4, ., 5	0.6430	0.7991	0.9825	yes	no
Q8XMJ7	ASSY_CLOPE	6, ., 3, ., 4, ., 5	0.5768	0.8012	0.9753	yes	no
A5D510	ASSY_PELTS	6, ., 3, ., 4, ., 5	0.5994	0.8032	0.9875	yes	no
B2UYI0	ASSY_CLOBA	6, ., 3, ., 4, ., 5	0.5685	0.8093	0.9803	yes	no
Q1IWM3	ASSY_DEIGD	6, ., 3, ., 4, ., 5	0.56	0.8093	0.9637	yes	no
A4YBT9	ASSY_SHEPC	6, ., 3, ., 4, ., 5	0.5645	0.7991	0.9680	yes	no
A1RPR6	ASSY_SHESW	6, ., 3, ., 4, ., 5	0.5645	0.7991	0.9680	yes	no
B8FH30	ASSY_DESAA	6, ., 3, ., 4, ., 5	0.5835	0.7951	0.98	yes	no
A7NPB0	ASSY_ROSCS	6, ., 3, ., 4, ., 5	0.6080	0.8032	0.9850	yes	no
Q8DCN0	ASSY_VIBVU	6, ., 3, ., 4, ., 5	0.5736	0.7991	0.9776	yes	no
Q2LT97	ASSY_SYNAS	6, ., 3, ., 4, ., 5	0.5757	0.7971	0.9800	yes	no
A7MXB9	ASSY_VIBHB	6, ., 3, ., 4, ., 5	0.5695	0.7870	0.9603	yes	no
Q9SZX3	ASSY_ARATH	6, ., 3, ., 4, ., 5	0.8008	0.9655	0.9635	yes	no
A8GZ21	ASSY_SHEPA	6, ., 3, ., 4, ., 5	0.5721	0.7991	0.9563	yes	no
A3DBU1	ASSY_CLOTH	6, ., 3, ., 4, ., 5	0.6	0.7971	0.9703	yes	no
A4J173	ASSY_DESRM	6, ., 3, ., 4, ., 5	0.6423	0.8032	0.9875	yes	no
P61524	ASSY_LEPIC	6, ., 3, ., 4, ., 5	0.5516	0.8032	0.9826	yes	no
P61526	ASSY_THET2	6, ., 3, ., 4, ., 5	0.6025	0.7991	0.985	yes	no
B6EMN8	ASSY_ALISL	6, ., 3, ., 4, ., 5	0.5644	0.7870	0.9627	yes	no
B0KBW5	ASSY_THEP3	6, ., 3, ., 4, ., 5	0.5913	0.7971	0.9585	yes	no
A5F4Z4	ASSY_VIBC3	6, ., 3, ., 4, ., 5	0.5567	0.7870	0.9603	yes	no
Q2RG67	ASSY_MOOTA	6, ., 3, ., 4, ., 5	0.5949	0.7991	0.9656	yes	no
Q24ZG8	ASSY_DESHY	6, ., 3, ., 4, ., 5	0.6272	0.8032	0.9682	yes	no
A3Q9C9	ASSY_SHELP	6, ., 3, ., 4, ., 5	0.5577	0.8052	0.9754	yes	no
C4Z9C9	ASSY_EUBR3	6, ., 3, ., 4, ., 5	0.5707	0.7951	0.9607	yes	no
B2TQ23	ASSY_CLOBB	6, ., 3, ., 4, ., 5	0.5685	0.8093	0.9803	yes	no
Q1IIZ2	ASSY_KORVE	6, ., 3, ., 4, ., 5	0.5812	0.7971	0.9703	yes	no
Q3IHT8	ASSY_PSEHT	6, ., 3, ., 4, ., 5	0.5491	0.8052	0.9925	yes	no
Q8EYP7	ASSY_LEPIN	6, ., 3, ., 4, ., 5	0.5516	0.8032	0.9826	yes	no
P59846	ASSY_THET8	6, ., 3, ., 4, ., 5	0.6	0.7991	0.985	yes	no
A6M1Z4	ASSY_CLOB8	6, ., 3, ., 4, ., 5	0.5735	0.8093	0.9803	yes	no
Q9KNT8	ASSY_VIBCH	6, ., 3, ., 4, ., 5	0.5567	0.7870	0.9603	yes	no
B0TL85	ASSY_SHEHH	6, ., 3, ., 4, ., 5	0.5639	0.8073	0.9660	yes	no
B8FWX2	ASSY_DESHD	6, ., 3, ., 4, ., 5	0.6272	0.8032	0.9875	yes	no
Q0TTA5	ASSY_CLOP1	6, ., 3, ., 4, ., 5	0.5793	0.8012	0.9801	yes	no
B0S9J6	ASSY_LEPBA	6, ., 3, ., 4, ., 5	0.5798	0.7849	0.9626	yes	no
Q8R7C2	ASSY_THETN	6, ., 3, ., 4, ., 5	0.5984	0.8012	0.9634	yes	no
A0LEB2	ASSY_SYNFM	6, ., 3, ., 4, ., 5	0.5664	0.7910	0.9725	yes	no
Q2RMV0	ASSY_RHORT	6, ., 3, ., 4, ., 5	0.5575	0.8052	0.9826	yes	no
Q7MH72	ASSY_VIBVY	6, ., 3, ., 4, ., 5	0.5736	0.7991	0.9776	yes	no
Q3A1V1	ASSY_PELCD	6, ., 3, ., 4, ., 5	0.5696	0.8113	0.9852	yes	no
B0SJR2	ASSY_LEPBP	6, ., 3, ., 4, ., 5	0.5798	0.7849	0.9626	yes	no
Q5QWZ9	ASSY_IDILO	6, ., 3, ., 4, ., 5	0.5634	0.7991	0.9776	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.4	0.983
3rd Layer	6.3.4.5	0.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		493
PLN00200		404	PLN00200, PLN00200, argininosuccinate synthase; Pr	0.0
PRK00509		399	PRK00509, PRK00509, argininosuccinate synthase; Pr	0.0
cd01999		385	cd01999, Argininosuccinate_Synthase, Argininosucci	0.0
COG0137		403	COG0137, ArgG, Argininosuccinate synthase [Amino a	0.0
pfam00764		387	pfam00764, Arginosuc_synth, Arginosuccinate syntha	0.0
TIGR00032		394	TIGR00032, argG, argininosuccinate synthase	1e-179
PRK13820		394	PRK13820, PRK13820, argininosuccinate synthase; Pr	1e-166
PRK04527		400	PRK04527, PRK04527, argininosuccinate synthase; Pr	7e-66
PRK05370		447	PRK05370, PRK05370, argininosuccinate synthase; Va	1e-52
TIGR00268		252	TIGR00268, TIGR00268, TIGR00268 family protein	5e-05
COG1606		269	COG1606, COG1606, ATP-utilizing enzymes of the PP-	7e-05
cd01990		202	cd01990, Alpha_ANH_like_I, This is a subfamily of	0.001
COG0037		298	COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [C	0.001
COG0603		222	COG0603, COG0603, Predicted PP-loop superfamily AT	0.003

>gnl\|CDD\|177791 PLN00200, PLN00200, argininosuccinate synthase; Provisional	Back alignment and domain information

 Score =  811 bits (2097), Expect = 0.0
 Identities = 339/403 (84%), Positives = 368/403 (91%), Gaps = 1/403 (0%)

Query: 92  RGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQ 151
           RGKLNKVVLAYSGGLDTSVI+ WLRENYGCEVVCFTADVGQGI+EL+GLE KAKASGA Q
Sbjct: 2   RGKLNKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQGIEELEGLEAKAKASGAKQ 61

Query: 152 LVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGC 211
           LVVKDL+EEFV+DYIFPCLRA AIYE KYLLGTSMARP+IAKAMVD+A+EVGADAVAHG 
Sbjct: 62  LVVKDLREEFVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGA 121

Query: 212 TGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRD 271
           TGKGNDQVRFELTFFALNPEL VVAPWREWDI+GRED IEYAKKHN+PVPVTKKSIYSRD
Sbjct: 122 TGKGNDQVRFELTFFALNPELKVVAPWREWDIKGREDLIEYAKKHNIPVPVTKKSIYSRD 181

Query: 272 RNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSP 331
           RNLWH+S+EGDILEDP NEPK+DM+MMSV PE AP+QPEYIEI    G+PV++NGK LSP
Sbjct: 182 RNLWHISYEGDILEDPANEPKEDMFMMSVSPEAAPDQPEYIEIEFEKGLPVAINGKTLSP 241

Query: 332 ASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETM 391
           A+LL +LNEIGG+HGIGRIDMVENR VGMKSRGVYETPGGTILF+A +ELESLTLDRETM
Sbjct: 242 ATLLTKLNEIGGKHGIGRIDMVENRFVGMKSRGVYETPGGTILFAAHRELESLTLDRETM 301

Query: 392 QVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPK 451
           QVKDSLALKYAELVY G WFDP RES+DAFME IT+TTTGSV LKLYKG+VSV GR SP 
Sbjct: 302 QVKDSLALKYAELVYNGFWFDPERESMDAFMEKITETTTGSVRLKLYKGNVSVAGRKSPY 361

Query: 452 SLYRQDISSFESGQ-IYDQADAAGFIRLYGLPMRVRAMLERGI 493
           SLYRQDISSFE G  IY+QADAAGFIRLY L +R RAML + I
Sbjct: 362 SLYRQDISSFEEGGGIYNQADAAGFIRLYALRLRTRAMLRKKI 404

Length = 404

>gnl\|CDD\|234785 PRK00509, PRK00509, argininosuccinate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|238957 cd01999, Argininosuccinate_Synthase, Argininosuccinate synthase	Back alignment and domain information

>gnl\|CDD\|223215 COG0137, ArgG, Argininosuccinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|201432 pfam00764, Arginosuc_synth, Arginosuccinate synthase	Back alignment and domain information

>gnl\|CDD\|199987 TIGR00032, argG, argininosuccinate synthase	Back alignment and domain information

>gnl\|CDD\|237521 PRK13820, PRK13820, argininosuccinate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|235305 PRK04527, PRK04527, argininosuccinate synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|235434 PRK05370, PRK05370, argininosuccinate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|129369 TIGR00268, TIGR00268, TIGR00268 family protein	Back alignment and domain information

>gnl\|CDD\|224522 COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|238948 cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>gnl\|CDD\|223115 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223676 COG0603, COG0603, Predicted PP-loop superfamily ATPase [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		493
COG0137		403	ArgG Argininosuccinate synthase [Amino acid transp	100.0
PF00764		388	Arginosuc_synth: Arginosuccinate synthase; InterPr	100.0
PLN00200		404	argininosuccinate synthase; Provisional	100.0
PRK00509		399	argininosuccinate synthase; Provisional	100.0
PRK13820		394	argininosuccinate synthase; Provisional	100.0
PRK04527		400	argininosuccinate synthase; Provisional	100.0
PRK05370		447	argininosuccinate synthase; Validated	100.0
cd01999		385	Argininosuccinate_Synthase Argininosuccinate synth	100.0
TIGR00032		394	argG argininosuccinate synthase. argG in bacteria,	100.0
KOG1706		412	consensus Argininosuccinate synthase [Amino acid t	100.0
PF03054		356	tRNA_Me_trans: tRNA methyl transferase; InterPro:	100.0
COG0482		356	TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid	100.0
PRK14664		362	tRNA-specific 2-thiouridylase MnmA; Provisional	100.0
PRK14665		360	mnmA tRNA-specific 2-thiouridylase MnmA; Provision	100.0
PRK00143		346	mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	100.0
cd01998		349	tRNA_Me_trans tRNA methyl transferase. This family	100.0
TIGR00420		352	trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me	100.0
KOG2805		377	consensus tRNA (5-methylaminomethyl-2-thiouridylat	99.95
PRK10696		258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	99.92
COG0037		298	MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle	99.89
cd01993		185	Alpha_ANH_like_II This is a subfamily of Adenine n	99.86
cd01990		202	Alpha_ANH_like_I This is a subfamily of Adenine nu	99.86
PRK08349		198	hypothetical protein; Validated	99.85
TIGR00268		252	conserved hypothetical protein TIGR00268. The N-te	99.85
PF01171		182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	99.85
TIGR00884		311	guaA_Cterm GMP synthase (glutamine-hydrolyzing), C	99.84
TIGR02432		189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	99.83
cd01712		177	ThiI ThiI is required for thiazole synthesis in th	99.83
PRK00919		307	GMP synthase subunit B; Validated	99.82
PRK11106		231	queuosine biosynthesis protein QueC; Provisional	99.82
cd01992		185	PP-ATPase N-terminal domain of predicted ATPase of	99.82
COG0603		222	Predicted PP-loop superfamily ATPase [General func	99.81
cd01997		295	GMP_synthase_C The C-terminal domain of GMP synthe	99.81
PRK08384		381	thiamine biosynthesis protein ThiI; Provisional	99.81
PRK00074		511	guaA GMP synthase; Reviewed	99.8
COG1606		269	ATP-utilizing enzymes of the PP-loop superfamily [	99.79
PF06508		209	QueC: Queuosine biosynthesis protein QueC; InterPr	99.78
TIGR00364		201	exsB protein. This protein family is represented b	99.75
TIGR00342		371	thiazole biosynthesis/tRNA modification protein Th	99.74
PRK14561		194	hypothetical protein; Provisional	99.74
TIGR00552		250	nadE NAD+ synthetase. NAD+ synthetase is a nearly	99.73
PRK10660		436	tilS tRNA(Ile)-lysidine synthetase; Provisional	99.69
PRK01269		482	tRNA s(4)U8 sulfurtransferase; Provisional	99.68
PRK01565		394	thiamine biosynthesis protein ThiI; Provisional	99.68
cd01713		173	PAPS_reductase This domain is found in phosphoaden	99.68
cd01995		169	ExsB ExsB is a transcription regulator related pro	99.68
PLN02347		536	GMP synthetase	99.66
PRK08576		438	hypothetical protein; Provisional	99.64
PF02568		197	ThiI: Thiamine biosynthesis protein (ThiI); InterP	99.61
PRK05253		301	sulfate adenylyltransferase subunit 2; Provisional	99.6
cd00553		248	NAD_synthase NAD+ synthase is a homodimer, which c	99.6
PRK13980		265	NAD synthetase; Provisional	99.53
KOG2840		347	consensus Uncharacterized conserved protein with s	99.5
PRK02090		241	phosphoadenosine phosphosulfate reductase; Provisi	99.49
cd01994		194	Alpha_ANH_like_IV This is a subfamily of Adenine n	99.49
TIGR02039		294	CysD sulfate adenylyltransferase, small subunit. I	99.47
COG0519		315	GuaA GMP synthase, PP-ATPase domain/subunit [Nucle	99.45
cd01996		154	Alpha_ANH_like_III This is a subfamily of Adenine	99.45
TIGR03679		218	arCOG00187 arCOG00187 universal archaeal metal-bin	99.43
cd01986		103	Alpha_ANH_like Adenine nucleotide alpha hydrolases	99.37
TIGR03573		343	WbuX N-acetyl sugar amidotransferase. This enzyme	99.31
PRK12563		312	sulfate adenylyltransferase subunit 2; Provisional	99.29
PF02540		242	NAD_synthase: NAD synthase; InterPro: IPR022310 NA	99.26
PRK00876		326	nadE NAD synthetase; Reviewed	99.2
PF01507		174	PAPS_reduct: Phosphoadenosine phosphosulfate reduc	99.16
COG2117		198	Predicted subunit of tRNA(5-methylaminomethyl-2-th	99.15
COG0301		383	ThiI Thiamine biosynthesis ATP pyrophosphatase [Co	99.14
PTZ00323		294	NAD+ synthase; Provisional	99.13
PRK02628		679	nadE NAD synthetase; Reviewed	99.06
TIGR00289		222	conserved hypothetical protein TIGR00289. Homologo	99.05
PRK08557		417	hypothetical protein; Provisional	99.03
cd01991		269	Asn_Synthase_B_C The C-terminal domain of Asparagi	99.03
PRK13794		479	hypothetical protein; Provisional	99.02
PRK13795		636	hypothetical protein; Provisional	99.0
COG1365		255	Predicted ATPase (PP-loop superfamily) [General fu	98.99
TIGR00434		212	cysH phosophoadenylyl-sulfate reductase (thioredox	98.97
PF00733		255	Asn_synthase: Asparagine synthase; InterPro: IPR00	98.92
PRK13981		540	NAD synthetase; Provisional	98.91
TIGR02057		226	PAPS_reductase phosphoadenosine phosphosulfate red	98.9
COG0175		261	CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr	98.89
COG2102		223	Predicted ATPases of PP-loop superfamily [General	98.84
TIGR01536		467	asn_synth_AEB asparagine synthase (glutamine-hydro	98.79
TIGR00290		223	MJ0570_dom MJ0570-related uncharacterized domain.	98.78
PRK00768		268	nadE NAD synthetase; Reviewed	98.77
KOG1622		552	consensus GMP synthase [Nucleotide transport and m	98.77
COG0171		268	NadE NAD synthase [Coenzyme metabolism]	98.76
PF01902		218	ATP_bind_4: ATP-binding region; InterPro: IPR00276	98.55
KOG2594		396	consensus Uncharacterized conserved protein [Funct	98.53
PRK06850		507	hypothetical protein; Provisional	98.53
TIGR03183		447	DNA_S_dndC putative sulfurtransferase DndC. Member	98.48
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	98.36
PTZ00077		586	asparagine synthetase-like protein; Provisional	98.31
PRK09431		554	asnB asparagine synthetase B; Provisional	98.29
PLN02549		578	asparagine synthase (glutamine-hydrolyzing)	98.25
TIGR03104		589	trio_amidotrans asparagine synthase family amidotr	98.13
TIGR03108		628	eps_aminotran_1 exosortase 1 system-associated ami	98.12
COG0367		542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	97.95
PLN02309		457	5'-adenylylsulfate reductase	97.92
TIGR00424		463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.88
TIGR02055		191	APS_reductase thioredoxin-dependent adenylylsulfat	97.78
PLN02339		700	NAD+ synthase (glutamine-hydrolysing)	97.74
KOG0571		543	consensus Asparagine synthase (glutamine-hydrolyzi	97.63
PF02677		176	DUF208: Uncharacterized BCR, COG1636; InterPro: IP	96.75
COG3969		407	Predicted phosphoadenosine phosphosulfate sulfotra	96.5
KOG2316		277	consensus Predicted ATPase (PP-loop superfamily) [	95.08
TIGR00269		104	conserved hypothetical protein TIGR00269.	93.96
COG1636		204	Uncharacterized protein conserved in bacteria [Fun	92.04
cd01987		124	USP_OKCHK USP domain is located between the N-term	90.48
KOG0189		261	consensus Phosphoadenosine phosphosulfate reductas	88.81
PRK10490		895	sensor protein KdpD; Provisional	88.49
KOG0573		520	consensus Asparagine synthase [Amino acid transpor	84.88
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	81.76

>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=3.7e-121  Score=925.82  Aligned_cols=396  Identities=59%  Similarity=0.997  Sum_probs=388.3

Q ss_pred             CCEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCc
Q 011097           95 LNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGA  174 (493)
Q Consensus        95 ~~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a  174 (493)
                      ++||++|||||+||||++.||++++|++|+++++|+||+++|++.++++|.++|+.+++++|++++|+++++.|++++|+
T Consensus         4 ~kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ana   83 (403)
T COG0137           4 VKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKANA   83 (403)
T ss_pred             CcEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHHhhc
Confidence            47999999999999999999999967999999999999878999999999999998899999999999999999999999


Q ss_pred             cccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEeccccCCCCCHHHHHHHHH
Q 011097          175 IYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAK  254 (493)
Q Consensus       175 ~y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~~~l~sKeEi~~yA~  254 (493)
                      .|+|.||++++++||+|.+.++++|++.||++||||||++||||+||+.++.+++|++++|+|||+|.+ +|+++++||+
T Consensus        84 ~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQvRFe~~~~al~p~lkiiAP~Rew~~-~R~~~i~Ya~  162 (403)
T COG0137          84 LYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFELAILALNPDLKIIAPWREWNL-TREEEIEYAE  162 (403)
T ss_pred             eeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCceeeeeeehhhhCCCcEEEeehhhhcc-ChHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 5999999999


Q ss_pred             HCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCeecChHHH
Q 011097          255 KHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASL  334 (493)
Q Consensus       255 ~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~~l~~~~~  334 (493)
                      ++|||+..+.++|||.|+|+||+|+|||.|||||+.||+++|.||++|+++|++|++++|+|++|.||++||+.++++++
T Consensus       163 ~~gipv~~~~~kpySiD~Nlwg~S~Egg~LEdp~~~pped~~~~tv~p~dap~~pe~v~I~Fe~G~PValnG~~~~~~~l  242 (403)
T COG0137         163 EHGIPVKATKEKPYSIDENLWGRSIEGGDLEDPWNEPPEDAYEWTVSPEDAPDEPEEVEIGFEKGVPVALNGEKLSPVEL  242 (403)
T ss_pred             HcCCCccccCCCCcccchhhhccccccccccCcCcCCCchHHhhcCChhhCCCCCeEEEEEEecCeEEEEcCEeCCHHHH
Confidence            99999998889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHH-HHHHHHHHhhcccCccH
Q 011097          335 LAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDS-LALKYAELVYAGRWFDP  413 (493)
Q Consensus       335 i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~-~~~~~~~lvy~G~w~~p  413 (493)
                      +.+||+|||+|||||+|+||||+||+|||||||+||+++|++||++||++||||+++++|+. ++++||+|||+|+||||
T Consensus       243 i~~lN~i~g~hGvGRiD~vEnR~vG~KSRevYE~Pg~tiL~~Ah~~LE~ltl~r~~~~~k~~~~~~~~a~lvY~GlWf~P  322 (403)
T COG0137         243 ILELNEIAGRHGVGRIDIVENRLVGIKSREVYEAPGATILLTAHRALESLTLDREEAHFKDIELGPKYAELVYNGLWFSP  322 (403)
T ss_pred             HHHHHHHHhhcCCCchheeehheeeeecchhccCchHHHHHHHHHHHHhheecHHHHhhhhhhhHHHHHHHHhCCCccCH
Confidence            99999999999999999999999999999999999999999999999999999999999995 99999999999999999


Q ss_pred             HHHHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHHHHHHhc
Q 011097          414 LRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLER  491 (493)
Q Consensus       414 ~~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~~~~~~~  491 (493)
                      ++++|++|++.+|++|||+|+|+|||||++++||+||+|||+++++||++++.|+|.+|+|||++|||++++.+++.+
T Consensus       323 l~~~L~a~~~~~q~~VtG~V~lkL~kG~~~v~gr~S~~slY~~~l~t~~~~~~~dq~~a~GFi~~~~l~~k~~~~~~~  400 (403)
T COG0137         323 LREALRAFIDETQEHVTGEVRLKLYKGNVYVIGRKSPNSLYSEELATYEEGDAFDQRDAQGFIKLHGLRSKLAARVKK  400 (403)
T ss_pred             HHHHHHHHHHHHHhhcceEEEEEEECCeEEEEeccCCccccChhhcccccccCcchhHhhHHHHHhccHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987764

>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6	Back alignment and domain information

>PLN00200 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK00509 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK13820 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK04527 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK05370 argininosuccinate synthase; Validated	Back alignment and domain information

>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase	Back alignment and domain information

>TIGR00032 argG argininosuccinate synthase	Back alignment and domain information

>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	Back alignment and domain information

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	Back alignment and domain information

>cd01998 tRNA_Me_trans tRNA methyl transferase	Back alignment and domain information

>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	Back alignment and domain information

>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	Back alignment and domain information

>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PRK08349 hypothetical protein; Validated	Back alignment and domain information

>TIGR00268 conserved hypothetical protein TIGR00268	Back alignment and domain information

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]	Back alignment and domain information

>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit	Back alignment and domain information

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway	Back alignment and domain information

>PRK00919 GMP synthase subunit B; Validated	Back alignment and domain information

>PRK11106 queuosine biosynthesis protein QueC; Provisional	Back alignment and domain information

>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	Back alignment and domain information

>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]	Back alignment and domain information

>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase	Back alignment and domain information

>PRK08384 thiamine biosynthesis protein ThiI; Provisional	Back alignment and domain information

>PRK00074 guaA GMP synthase; Reviewed	Back alignment and domain information

>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	Back alignment and domain information

>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome	Back alignment and domain information

>TIGR00364 exsB protein	Back alignment and domain information

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI	Back alignment and domain information

>PRK14561 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00552 nadE NAD+ synthetase	Back alignment and domain information

>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional	Back alignment and domain information

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional	Back alignment and domain information

>PRK01565 thiamine biosynthesis protein ThiI; Provisional	Back alignment and domain information

>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>cd01995 ExsB ExsB is a transcription regulator related protein	Back alignment and domain information

>PLN02347 GMP synthetase	Back alignment and domain information

>PRK08576 hypothetical protein; Provisional	Back alignment and domain information

>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell	Back alignment and domain information

>PRK05253 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)	Back alignment and domain information

>PRK13980 NAD synthetase; Provisional	Back alignment and domain information

>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]	Back alignment and domain information

>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional	Back alignment and domain information

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>TIGR02039 CysD sulfate adenylyltransferase, small subunit	Back alignment and domain information

>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]	Back alignment and domain information

>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein	Back alignment and domain information

>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases	Back alignment and domain information

>TIGR03573 WbuX N-acetyl sugar amidotransferase	Back alignment and domain information

>PRK12563 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6	Back alignment and domain information

>PRK00876 nadE NAD synthetase; Reviewed	Back alignment and domain information

>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]	Back alignment and domain information

>PTZ00323 NAD+ synthase; Provisional	Back alignment and domain information

>PRK02628 nadE NAD synthetase; Reviewed	Back alignment and domain information

>TIGR00289 conserved hypothetical protein TIGR00289	Back alignment and domain information

>PRK08557 hypothetical protein; Provisional	Back alignment and domain information

>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B	Back alignment and domain information

>PRK13794 hypothetical protein; Provisional	Back alignment and domain information

>PRK13795 hypothetical protein; Provisional	Back alignment and domain information

>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin)	Back alignment and domain information

>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO)	Back alignment and domain information

>PRK13981 NAD synthetase; Provisional	Back alignment and domain information

>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent	Back alignment and domain information

>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]	Back alignment and domain information

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain	Back alignment and domain information

>PRK00768 nadE NAD synthetase; Reviewed	Back alignment and domain information

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]	Back alignment and domain information

>COG0171 NadE NAD synthase [Coenzyme metabolism]	Back alignment and domain information

>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal	Back alignment and domain information

>KOG2594 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK06850 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>PTZ00077 asparagine synthetase-like protein; Provisional	Back alignment and domain information

>PRK09431 asnB asparagine synthetase B; Provisional	Back alignment and domain information

>PLN02549 asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase	Back alignment and domain information

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1	Back alignment and domain information

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>PLN02309 5'-adenylylsulfate reductase	Back alignment and domain information

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent	Back alignment and domain information

>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase	Back alignment and domain information

>PLN02339 NAD+ synthase (glutamine-hydrolysing)	Back alignment and domain information

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function	Back alignment and domain information

>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]	Back alignment and domain information

>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00269 conserved hypothetical protein TIGR00269	Back alignment and domain information

>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		493
1kh1_A		400	Crystal Structure Of Thermus Thermophilus Hb8 Argin		1e-141
1vl2_A		421	Crystal Structure Of Argininosuccinate Synthase (Tm		1e-108
2nz2_A		413	Crystal Structure Of Human Argininosuccinate Syntha		5e-98
1k97_A		455	Crystal Structure Of E. Coli Argininosuccinate Synt		1e-38

>pdb|1KH1|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Argininosuccinate Synthetase Length = 400

Back alignment and structure

Iteration: 1

Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/395 (60%), Positives = 310/395 (78%), Gaps = 1/395 (0%) Query: 97 KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKD 156 K+VLAYSGGLDTS+I+ WL+E Y EV+ FTAD+GQG +E++ EKA +GA + + D Sbjct: 2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQG-EEVEEAREKALRTGASKAIALD 60 Query: 157 LKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGN 216 LKEEFV+D++FP +RAGA+YE YLLGTS+ARP+IAK +V +A E GA+A+AHG TGKGN Sbjct: 61 LKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGN 120 Query: 217 DQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWH 276 DQVRFELT +AL P++ V+APWREW QGR++ I YA+ H +PVPVT++ YS D NL H Sbjct: 121 DQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLH 180 Query: 277 LSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLA 336 +S+EG +LEDP EP K M+ M+ DPE+AP+ PEY+E+ G PV+VNG++LSPA+LL Sbjct: 181 ISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQ 240 Query: 337 ELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDS 396 LNEIGGRHG+GR+D+VENR VGMKSRGVYETPGGTIL+ A + +ESLTLDRE + +D Sbjct: 241 RLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDM 300 Query: 397 LALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQ 456 L+ KYAELVY G W+ P RE++ A+ +++ ++ TG LKLYKG+V V GR +PKSLYRQ Sbjct: 301 LSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQ 360 Query: 457 DISSFESGQIYDQADAAGFIRLYGLPMRVRAMLER 491 D+ SF+ YDQ DA GFI++ L +RVRA++ER Sbjct: 361 DLVSFDEAGGYDQKDAEGFIKIQALRLRVRALVER 395

PyMOL of 1kh1

>pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780) From Thermotoga Maritima At 1.65 A Resolution Length = 421

Back alignment and structure

>pdb|2NZ2|A Chain A, Crystal Structure Of Human Argininosuccinate Synthase In Complex With Aspartate And Citrulline Length = 413

Back alignment and structure

>pdb|1K97|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase In Complex With Aspartate And Citrulline Length = 455

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		493
1kor_A		400	Argininosuccinate synthetase; ligase, riken struct	0.0
1vl2_A		421	Argininosuccinate synthase; TM1780, structural gen	0.0
2nz2_A		413	Argininosuccinate synthase; amino-acid biosynthesi	0.0
1k92_A		455	Argininosuccinate synthase, argininosuccinate SY;	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3k32_A		203	Uncharacterized protein MJ0690; predicted subunit	7e-06

>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Length = 400	Back alignment and structure

 Score =  790 bits (2044), Expect = 0.0
 Identities = 237/395 (60%), Positives = 310/395 (78%), Gaps = 1/395 (0%)

Query: 97  KVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKD 156
           K+VLAYSGGLDTS+I+ WL+E Y  EV+ FTAD+GQG +E++   EKA  +GA + +  D
Sbjct: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQG-EEVEEAREKALRTGASKAIALD 60

Query: 157 LKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGN 216
           LKEEFV+D++FP +RAGA+YE  YLLGTS+ARP+IAK +V +A E GA+A+AHG TGKGN
Sbjct: 61  LKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGN 120

Query: 217 DQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWH 276
           DQVRFELT +AL P++ V+APWREW  QGR++ I YA+ H +PVPVT++  YS D NL H
Sbjct: 121 DQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLH 180

Query: 277 LSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLA 336
           +S+EG +LEDP  EP K M+ M+ DPE+AP+ PEY+E+    G PV+VNG++LSPA+LL 
Sbjct: 181 ISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQ 240

Query: 337 ELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDS 396
            LNEIGGRHG+GR+D+VENR VGMKSRGVYETPGGTIL+ A + +ESLTLDRE +  +D 
Sbjct: 241 RLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDM 300

Query: 397 LALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQ 456
           L+ KYAELVY G W+ P RE++ A+ +++ ++ TG   LKLYKG+V V GR +PKSLYRQ
Sbjct: 301 LSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQ 360

Query: 457 DISSFESGQIYDQADAAGFIRLYGLPMRVRAMLER 491
           D+ SF+    YDQ DA GFI++  L +RVRA++ER
Sbjct: 361 DLVSFDEAGGYDQKDAEGFIKIQALRLRVRALVER 395

PyMOL of 1kor

>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Length = 421	Back alignment and structure

>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Length = 413	Back alignment and structure

>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Length = 455	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Length = 203	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		493
1vl2_A		421	Argininosuccinate synthase; TM1780, structural gen	100.0
1k92_A		455	Argininosuccinate synthase, argininosuccinate SY;	100.0
2nz2_A		413	Argininosuccinate synthase; amino-acid biosynthesi	100.0
1kor_A		400	Argininosuccinate synthetase; ligase, riken struct	100.0
2hma_A		376	Probable tRNA (5-methylaminomethyl-2-thiouridylat	99.97
2der_A		380	TRNA-specific 2-thiouridylase MNMA; protein-RNA co	99.97
2pg3_A		232	Queuosine biosynthesis protein QUEC; YP_049261.1,	99.88
1wy5_A		317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	99.87
3bl5_A		219	Queuosine biosynthesis protein QUEC; PREQ1 biosynt	99.85
3a2k_A		464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	99.85
2dpl_A		308	GMP synthetase, GMP synthase [glutamine-hydrolyzin	99.84
3k32_A		203	Uncharacterized protein MJ0690; predicted subunit	99.81
1ni5_A		433	Putative cell cycle protein MESJ; structural genom	99.76
2ywb_A		503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.76
3tqi_A		527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.76
2c5s_A		413	THII, probable thiamine biosynthesis protein THII;	99.73
3uow_A		556	GMP synthetase; structural genomics consortium, SG	99.72
1sur_A		215	PAPS reductase; assimilatory sulfate reduction, 3-	99.72
3fiu_A		249	NH(3)-dependent NAD(+) synthetase; rossman fold, a	99.72
2e18_A		257	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.72
1gpm_A		525	GMP synthetase, XMP aminase; class I glutamine ami	99.71
3p52_A		249	NH(3)-dependent NAD(+) synthetase; structural geno	99.71
1xng_A		268	NH(3)-dependent NAD(+) synthetase; amidotransferas	99.69
2vxo_A		697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.69
2o8v_A		252	Phosphoadenosine phosphosulfate reductase; disulfi	99.65
1vbk_A		307	Hypothetical protein PH1313; structural genomics,	99.61
1wxi_A		275	NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l	99.56
1zun_A		325	Sulfate adenylyltransferase subunit 2; beta barrel	99.53
1kqp_A		271	NAD+ synthase, NH(3)-dependent NAD(+) synthetase,	99.51
2oq2_A		261	Phosphoadenosine phosphosulfate reductase; sulfate	99.5
3dpi_A		285	NAD+ synthetase; ssgcid, decode, structural genomi	99.46
3q4g_A		279	NH(3)-dependent NAD(+) synthetase; structural geno	99.46
3n05_A		590	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.42
3rjz_A		237	N-type ATP pyrophosphatase superfamily; structural	99.39
2wsi_A		306	FAD synthetase; transferase, nucleotidyltransferas	99.36
2goy_A		275	Adenosine phosphosulfate reductase; iron sulfur cl	99.33
3ilv_A		634	Glutamine-dependent NAD(+) synthetase; protein str	99.12
3sdb_A		680	Glutamine-dependent NAD(+) synthetase; glutamine-a	99.03
1ct9_A		553	Asparagine synthetase B; amidotransferase, substra	98.74
1q15_A		503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	98.66
1jgt_A		513	Beta-lactam synthetase; asparagine synthetase, cla	98.66
3fwk_A		308	FMN adenylyltransferase; FAD biosynthesis, alpha/b	98.66
4f4h_A		565	Glutamine dependent NAD+ synthetase; structural ge	98.22
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	84.93
3nbm_A		108	PTS system, lactose-specific IIBC components; PTS_	84.2
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	83.97
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	81.43

>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1	Back alignment and structure

Probab=100.00  E-value=6.1e-113  Score=895.56  Aligned_cols=392  Identities=49%  Similarity=0.866  Sum_probs=371.2

Q ss_pred             CEEEEEEcCChHHHHHHHHHHHccCCeEEEEEEecCCCcccHHHHHHHHHHcCCceEEEEcCcHHHHHhhhhhHHHhCcc
Q 011097           96 NKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAI  175 (493)
Q Consensus        96 ~KVvVA~SGG~DSsvll~~L~e~~G~eViavtid~Gq~~ed~e~a~~~A~~LGI~~~~VvDl~eef~~~~i~~~i~~~a~  175 (493)
                      +||+||||||+||+|+++||+++ |++|+|+|+|+||. +|++.|+++|+++||++|+++|++++|.++++.|++++++.
T Consensus        15 ~KVVVA~SGGlDSSv~a~~Lke~-G~eViavt~d~Gq~-~Ele~A~~vA~~lGi~~~~VvDl~eef~~~v~~p~i~~na~   92 (421)
T 1vl2_A           15 EKVVLAYSGGLDTSVILKWLCEK-GFDVIAYVANVGQK-DDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAM   92 (421)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEESSCC-CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHTTTCC
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHC-CCeEEEEEEEcCCH-HHHHHHHHHHHHcCCceEEEEecHHHHHHhhhhHHHhcCCc
Confidence            58999999999999999999998 99999999999996 78999999999999977999999999999999999999999


Q ss_pred             ccCcccccccCcHHHHHHHHHHHHHHcCCcEeeeCCCCCCCChHHHHHHHHhcCCCCeEEecccc--C--C-CCCHHHHH
Q 011097          176 YERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWRE--W--D-IQGREDAI  250 (493)
Q Consensus       176 y~g~y~~~~~~~R~l~~~~l~~~A~e~Gad~IAtGhn~~gnD~~r~~~~~~~l~p~i~ii~PLr~--~--~-l~sKeEi~  250 (493)
                      |+++|++++++||+++++.+.++|+++||++||||||+++|||++|+.++.++.|++++++||++  +  + + +|+|++
T Consensus        93 yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf~~~~~al~p~~~IiaPl~d~~~l~~~l-sK~Eir  171 (421)
T 1vl2_A           93 YEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAALNPNLKVISPWKDPEFLAKFK-GRTDLI  171 (421)
T ss_dssp             BTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHCTTSEEECGGGCHHHHHHTC---CHHH
T ss_pred             ccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHHHHHHHHhcCCCCeEEcccCchhhccccC-CHHHHH
Confidence            99999999988999999999999999999999999999999999999999999999999999998  3  3 3 799999


Q ss_pred             HHHHHCCCCCCCCCCCCCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCe---
Q 011097          251 EYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGK---  327 (493)
Q Consensus       251 ~yA~~~GIp~~~t~~cpyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~---  327 (493)
                      +||+++|||+..+++||||+|+||||+|+|||+|||||++||+++|.||++|+++||+|++++|+|++|.||+|||+   
T Consensus       172 ~~A~e~Glp~~~t~~kp~S~d~nl~~~s~E~g~ledp~~~~~~~~~~~t~~p~~ap~~p~~v~i~Fe~G~pv~ing~~~~  251 (421)
T 1vl2_A          172 NYAMEKGIPIKVSKKRPYSEDENLMHISHEAGKLEDPAHIPDEDVFTWTVSPKDAPDEETLLEIHFENGIPVKVVNLKDG  251 (421)
T ss_dssp             HHHHHHTCCCCSSCCCSSEEEECSSCEEEESGGGGSTTSCCCGGGCCSSCCTTTSCSSCEEEEEEEETTEEEEEEETTTC
T ss_pred             HHHHHcCCCcccCCCCCCcCCCCeecccccccccCCccccCChhhhhccCChhHCCCCCeEEEEEEEcceEEEEecccCC
Confidence            99999999998778999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             --ecChHHHHHHHHHhhhccccceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHh
Q 011097          328 --KLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELV  405 (493)
Q Consensus       328 --~l~~~~~i~~ln~ig~r~GiG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lv  405 (493)
                        .+++.+++.+||+|||+|||||+|+||||+|||||||||||||+|||++||++||++||||+++++|++++++||++|
T Consensus       252 ~~~~~~~~li~~lN~i~g~~GiGr~d~vEnr~vg~KsR~~yE~Pg~~iL~~Ah~~le~~~l~r~~~~~k~~~~~~~~~lv  331 (421)
T 1vl2_A          252 TEKTDPLELFEYLNEVGAKNGVGRLDMVENRFIGIKSRGVYETPGATILWIAHRDLEGITMDKEVMHLRDMLAPKFAELI  331 (421)
T ss_dssp             CEECSHHHHHHHHHHHHHHTTCCEEEEEEECSSSSEEEEEEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhcCcCeeeeecccccccccceeecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence              999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCccHHHHHHHHHHHHhcCceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHH
Q 011097          406 YAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRV  485 (493)
Q Consensus       406 y~G~w~~p~~~~l~~~i~~~q~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~  485 (493)
                      |+|+||||+|++|++||+++|++|||+|+|+||||+++++||+||+|||+++++||++.+.|+|.||+|||+||||++++
T Consensus       332 y~G~w~~p~~~~l~a~i~~~q~~V~G~V~~~l~kG~~~~~g~~s~~sly~~~~~s~~~~~~~~~~da~Gfi~~~~l~~~~  411 (421)
T 1vl2_A          332 YNGFWFSPEMEFLLAAFRKAQENVTGKVTVSIYKGNVMPVARYSPYSLYNPELSSMDVEGGFDATDSKGFINIHALRLKV  411 (421)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEECSSSTTCC--------CCCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCcCccHHHHHHHHHHHHHhCcceEEEEEEEECCeEEEEeeeCCccccCcccCccccCCCCChHHhhHHHHHccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             HHHHh
Q 011097          486 RAMLE  490 (493)
Q Consensus       486 ~~~~~  490 (493)
                      +++.+
T Consensus       412 ~~~~~  416 (421)
T 1vl2_A          412 HQLVK  416 (421)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88755

PyMOL of 1vl2

>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*	Back alignment and structure

>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}	Back alignment and structure

>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*	Back alignment and structure

>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}	Back alignment and structure

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*	Back alignment and structure

>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1	Back alignment and structure

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*	Back alignment and structure

>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}	Back alignment and structure

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}	Back alignment and structure

>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A	Back alignment and structure

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1	Back alignment and structure

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*	Back alignment and structure

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}	Back alignment and structure

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1	Back alignment and structure

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}	Back alignment and structure

>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2	Back alignment and structure

>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}	Back alignment and structure

>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}	Back alignment and structure

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1	Back alignment and structure

>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0	Back alignment and structure

>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A	Back alignment and structure

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}	Back alignment and structure

>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}	Back alignment and structure

>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1	Back alignment and structure

>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*	Back alignment and structure

>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2	Back alignment and structure

>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A	Back alignment and structure

>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}	Back alignment and structure

>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0	Back alignment and structure

>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0	Back alignment and structure

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}	Back alignment and structure

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A	Back alignment and structure

>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}	Back alignment and structure

>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}	Back alignment and structure

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*	Back alignment and structure

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1	Back alignment and structure

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*	Back alignment and structure

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*	Back alignment and structure

>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*	Back alignment and structure

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		493
d1j20a2		225	d.210.1.1 (A:171-395) Argininosuccinate synthetase	2e-97
d1vl2a2		236	d.210.1.1 (A:174-409) Argininosuccinate synthetase	1e-94
d1k92a2		256	d.210.1.1 (A:189-444) Argininosuccinate synthetase	2e-76
d1k92a1		188	c.26.2.1 (A:1-188) Argininosuccinate synthetase, N	5e-44
d1j20a1		165	c.26.2.1 (A:1-165) Argininosuccinate synthetase, N	1e-37
d1vl2a1		168	c.26.2.1 (A:2-169) Argininosuccinate synthetase, N	5e-32
d2c5sa1		218	c.26.2.6 (A:174-391) Thiamine biosynthesis protein	1e-13
d2pg3a1		230	c.26.2.1 (A:1-230) Queuosine biosynthesis protein	5e-07
d1gpma1		197	c.26.2.1 (A:208-404) GMP synthetase, central domai	3e-04

>d1j20a2 d.210.1.1 (A:171-395) Argininosuccinate synthetase, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 225	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Argininosuccinate synthetase, C-terminal domain
superfamily: Argininosuccinate synthetase, C-terminal domain
family: Argininosuccinate synthetase, C-terminal domain
domain: Argininosuccinate synthetase, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score =  291 bits (745), Expect = 2e-97
 Identities = 133/224 (59%), Positives = 173/224 (77%)

Query: 268 YSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGK 327
           YS D NL H+S+EG +LEDP  EP K M+ M+ DPE+AP+ PEY+E+    G PV+VNG+
Sbjct: 2   YSMDANLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGE 61

Query: 328 KLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLD 387
           +LSPA+LL  LNEIGGRHG+GR+D+VENR VGMKSRGVYETPGGTIL+ A + +ESLTLD
Sbjct: 62  RLSPAALLQRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLD 121

Query: 388 RETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENITKTTTGSVTLKLYKGSVSVTGR 447
           RE +  +D L+ KYAELVY G W+ P RE++ A+ +++ ++ TG   LKLYKG+V V GR
Sbjct: 122 REVLHQRDMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGR 181

Query: 448 TSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLER 491
            +PKSLYRQD+ SF+    YDQ DA GFI++  L +RVRA++ER
Sbjct: 182 KAPKSLYRQDLVSFDEAGGYDQKDAEGFIKIQALRLRVRALVER 225

PyMOL of d1j20a2

>d1vl2a2 d.210.1.1 (A:174-409) Argininosuccinate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 236	Back information, alignment and structure

>d1k92a2 d.210.1.1 (A:189-444) Argininosuccinate synthetase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 256	Back information, alignment and structure

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 188	Back information, alignment and structure

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 165	Back information, alignment and structure

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 168	Back information, alignment and structure

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Length = 218	Back information, alignment and structure

>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} Length = 230	Back information, alignment and structure

>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Length = 197	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		493
d1j20a2		225	Argininosuccinate synthetase, C-terminal domain {T	100.0
d1vl2a2		236	Argininosuccinate synthetase, C-terminal domain {T	100.0
d1k92a2		256	Argininosuccinate synthetase, C-terminal domain {E	100.0
d1wy5a1		216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	99.91
d1k92a1		188	Argininosuccinate synthetase, N-terminal domain {E	99.9
d2c5sa1		218	Thiamine biosynthesis protein ThiI, C-terminal dom	99.82
d1j20a1		165	Argininosuccinate synthetase, N-terminal domain {T	99.82
d1vl2a1		168	Argininosuccinate synthetase, N-terminal domain {T	99.8
d1ni5a1		227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	99.77
d2pg3a1		230	Queuosine biosynthesis protein QueC {Erwinia carot	99.65
d1gpma1		197	GMP synthetase, central domain {Escherichia coli [	99.64
d1xnga1		255	NH3-dependent NAD+-synthetase {Helicobacter pylori	99.45
d1sura_		215	Phosphoadenylyl sulphate (PAPS) reductase {Escheri	99.24
d1vbka1		132	Hypothetical protein PH1313, C-terminal domain {Ar	99.19
d1zuna1		211	Sulfate adenylyltransferase subunit 2, CysD {Pseud	99.08
d2d13a1		226	Hypothetical protein PH1257 {Archaeon Pyrococcus h	99.03
d1wxia1		274	NH3-dependent NAD+-synthetase {Escherichia coli [T	98.91
d1kqpa_		271	NH3-dependent NAD+-synthetase {Bacillus subtilis [	98.8
d1jgta1		299	beta-Lactam synthetase {Streptomyces clavuligerus	98.63
d1q15a1		296	beta-Lactam synthetase {Pectobacterium carotovorum	98.55
d1ct9a1		324	Asparagine synthetase B, C-terminal domain {Escher	98.14

>d1j20a2 d.210.1.1 (A:171-395) Argininosuccinate synthetase, C-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Argininosuccinate synthetase, C-terminal domain
superfamily: Argininosuccinate synthetase, C-terminal domain
family: Argininosuccinate synthetase, C-terminal domain
domain: Argininosuccinate synthetase, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.8e-81  Score=598.38  Aligned_cols=225  Identities=59%  Similarity=1.014  Sum_probs=218.3

Q ss_pred             CCcccCccccccccCccCCCCCCCchhhhhcccCCCCCCCCCCceeEEEeeecccEEecCeecChHHHHHHHHHhhhccc
Q 011097          267 IYSRDRNLWHLSHEGDILEDPENEPKKDMYMMSVDPEDAPNQPEYIEIGIVSGIPVSVNGKKLSPASLLAELNEIGGRHG  346 (493)
Q Consensus       267 pyS~d~nl~g~s~eg~~Le~~~~~~~~~~~~~t~~~~~~p~~~~~~~i~F~~G~pV~inG~~l~~~~~i~~ln~ig~r~G  346 (493)
                      |||+|+||||+|+|||+||||+++||+++|.||++|+++|++|++++|+|++|.||+|||+++++.+++.+||+|||+||
T Consensus         1 PyS~D~Nl~~~S~Egg~Ledp~~~ppe~~~~~t~~p~~ap~~pe~v~I~F~~G~Pv~ing~~~~~~~li~~LN~i~g~~G   80 (225)
T d1j20a2           1 PYSMDANLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRLNEIGGRHG   80 (225)
T ss_dssp             CCEEEECSSCEEEESGGGGCTTSCCCTTCCSSSCCGGGSCSSCEEEEEEEETTEEEEETTEECCHHHHHHHHHHHHHHTT
T ss_pred             CCCcccchhhhhhccchhcCCCCCCChhHHhccCCHHHCCCCCEEEEEEEeeeEEEEECCccCCHHHHHHHHHHHhhhce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeecccceeeeeecceeEecchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHhc
Q 011097          347 IGRIDMVENRLVGMKSRGVYETPGGTILFSAVQELESLTLDRETMQVKDSLALKYAELVYAGRWFDPLRESIDAFMENIT  426 (493)
Q Consensus       347 iG~~d~ienr~vG~K~r~vyEaPg~~iL~~Ah~~Le~~~l~~~~~~~k~~~~~~~~~lvy~G~w~~p~~~~l~~~i~~~q  426 (493)
                      |||+|+||||+|||||||||||||++||++|||+||++||||+++++|+.++++|+++||+|+||||+|++|++||+.+|
T Consensus        81 IGR~d~vEnr~vG~KsR~vYEaPg~tiL~~AHr~LE~~~Ldr~~~~~K~~l~~~~~~lvY~G~wf~P~~~~l~afi~~sq  160 (225)
T d1j20a2          81 VGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLSPKYAELVYYGFWYAPEREALQAYFDHVA  160 (225)
T ss_dssp             CCEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTCSSSHHHHHHHHHHHHHH
T ss_pred             EeeecccccccccccccceeecchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEEEEeCceEEEEeeeCCCCCCccccccccCCCCCCccccchhHHhhchHHHHHHHHhc
Q 011097          427 KTTTGSVTLKLYKGSVSVTGRTSPKSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLER  491 (493)
Q Consensus       427 ~~v~G~V~l~l~kG~~~~~~~~s~~sly~~~~~s~~~~~~~~~~~a~gfi~~~~~~~~~~~~~~~  491 (493)
                      ++|||+|+|+||||+++++||+||+|||+++++||++++.|+|+||+|||+|+||++|++|..+|
T Consensus       161 ~~VtG~V~lkLyKG~~~v~gr~S~~sLY~~~~aS~~~~~~~~~~dA~GFIki~~l~~k~~a~~~k  225 (225)
T d1j20a2         161 RSVTGVARLKLYKGNVYVVGRKAPKSLYRQDLVSFDEAGGYDQKDAEGFIKIQALRLRVRALVER  225 (225)
T ss_dssp             TTCCEEEEEEEETTEEEEEEEECTTCCCCGGGTCC----CCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hccceEEEEEEecCceEEEEeeCcccccCCccccccCCCCCCHHHHHHHHHHccHHHHHHHHhcC
Confidence            99999999999999999999999999999999999998899999999999999999999987653

PyMOL of d1j20a2

>d1vl2a2 d.210.1.1 (A:174-409) Argininosuccinate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1k92a2 d.210.1.1 (A:189-444) Argininosuccinate synthetase, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}	Back information, alignment and structure

>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}	Back information, alignment and structure

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}	Back information, alignment and structure

>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure