Citrus Sinensis ID: 011186

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
MGDTADQNQRPLLTDKDDDRENNNKDLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAGIAKQRLQKWSNPNPDDKRADRS
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHEEEHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccc
ccccccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHEEEHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccc
mgdtadqnqrplltdkdddrennnkdltSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLlpfyvfatpllkllgqpddvaeLSGTVAVWMIplhfsfafqfpltrFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLygyaafggcpltwsgfstqaFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVAnelgagngkgaGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLgvggiwggmifgGTFVQTVILAIITARCDWEKEAGIAKQRLqkwsnpnpddkradrs
mgdtadqnqrplltdkdddrennnkdltsrvwieskklwqIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAGIAkqrlqkwsnpnpddkradrs
MGDTADQNQRPLLTdkdddrennnkdLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVlflfcflllpfyvfATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLgvggiwggmifggTFVQTVILAIITARCDWEKEAGIAKQRLQKWSNPNPDDKRADRS
****************************SRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAGIA********************
***************************TSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAGI*********************
MGDTADQNQRPLLTDKDDDRENNNKDLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAGIAKQRLQKWS************
********************ENNNKDLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAGIAKQRLQKWS************
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MGDTADQNQRPLLTDKDDDRENNNKDLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAGIAKQRLQKWSNPNPDDKRADRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query491 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.981 0.950 0.420 1e-103
Q9LUH2477 MATE efflux family protei no no 0.942 0.970 0.343 2e-68
Q9LUH3469 MATE efflux family protei no no 0.918 0.961 0.342 7e-67
Q8GXM8476 MATE efflux family protei no no 0.959 0.989 0.302 2e-64
Q9SIA5476 MATE efflux family protei no no 0.920 0.949 0.317 5e-64
Q9SIA4476 MATE efflux family protei no no 0.959 0.989 0.312 2e-62
Q9SIA3476 MATE efflux family protei no no 0.959 0.989 0.306 1e-61
Q9SIA1477 MATE efflux family protei no no 0.947 0.974 0.317 2e-59
Q8RWF5483 MATE efflux family protei no no 0.898 0.913 0.325 5e-58
Q8K0H1567 Multidrug and toxin extru yes no 0.959 0.830 0.302 4e-49
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/507 (42%), Positives = 309/507 (60%), Gaps = 25/507 (4%)

Query: 4   TADQNQRPLLTDKDDDRENNNKD--------------LTSRVWI-----ESKKLWQIVGP 44
           ++ +   PLLT    D +   +               +T R W+     ESK LW + G 
Sbjct: 2   SSTETYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGA 61

Query: 45  AIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAF 104
           +I   + +Y ++ +T  F GHLG ++LA  SIA   I G  +G++LGMASA++T+CGQA+
Sbjct: 62  SIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAY 121

Query: 105 GAKRYHMLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIP 163
           GA++Y  +GI  QR+ +VL L   + L F Y ++ P+LK +GQ   +A      A  MIP
Sbjct: 122 GARQYSSMGIICQRA-MVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIP 180

Query: 164 LHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDIS 223
             ++FA   P+ RFLQ Q     +A++SL   L++ L +WL   VLDFG++GAAL L  S
Sbjct: 181 QIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFS 240

Query: 224 WWVLCF--GLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILIL 281
           WW+L    G+Y   +   C  TW+GFST+AF G+W Y KL+VA+ VMLCLE WY + L++
Sbjct: 241 WWLLVAVNGMYILMS-PNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVI 299

Query: 282 MTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSV 341
           ++G L N T+++DA+S+CM    W M   L   AA  VRV+NELGAGN + A  + +V  
Sbjct: 300 ISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVN 359

Query: 342 AQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAI 401
             + LI  +LCVI+++    ++  FTS  +V+A V  L  LLA++I LN +QP+LSGVAI
Sbjct: 360 ITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAI 419

Query: 402 GSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITAR 461
           GSGWQA VAY+NL  YY+IGLP+G ++G+   LGV GIW GMI  G  +QT+ L ++T +
Sbjct: 420 GSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMI-AGVILQTLTLIVLTLK 478

Query: 462 CDWEKEAGIAKQRLQKWSNPNPDDKRA 488
            +W  E   A QR++  +  N +   A
Sbjct: 479 TNWTSEVENAAQRVKTSATENQEMANA 505
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
224067013492 predicted protein [Populus trichocarpa] 0.983 0.981 0.784 0.0
356508053503 PREDICTED: protein TRANSPARENT TESTA 12 0.983 0.960 0.735 0.0
255545860497 multidrug resistance pump, putative [Ric 0.963 0.951 0.774 0.0
224067011486 predicted protein [Populus trichocarpa] 0.977 0.987 0.723 0.0
359492469490 PREDICTED: protein TRANSPARENT TESTA 12- 0.987 0.989 0.737 0.0
302142014521 unnamed protein product [Vitis vinifera] 0.987 0.930 0.737 0.0
224097194488 predicted protein [Populus trichocarpa] 0.965 0.971 0.738 0.0
449469827474 PREDICTED: protein TRANSPARENT TESTA 12- 0.949 0.983 0.725 0.0
356497726491 PREDICTED: protein TRANSPARENT TESTA 12- 0.971 0.971 0.7 0.0
255586693482 multidrug resistance pump, putative [Ric 0.967 0.985 0.723 0.0
>gi|224067013|ref|XP_002302326.1| predicted protein [Populus trichocarpa] gi|222844052|gb|EEE81599.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/483 (78%), Positives = 415/483 (85%)

Query: 2   GDTADQNQRPLLTDKDDDRENNNKDLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQA 61
           GD       P      D  + N   L SRVW E+KKLW+IVGPAIFSR+++++MNIITQA
Sbjct: 8   GDDLHDTLLPDDPVNHDVGQENQDPLASRVWTETKKLWEIVGPAIFSRVATFSMNIITQA 67

Query: 62  FAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWI 121
           FAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWI
Sbjct: 68  FAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWI 127

Query: 122 VLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQ 181
           VLF  CFLLLPFYVFA PLLK LGQPDDVAE SG VA+W+IPLHFSFAFQFPL RFLQ Q
Sbjct: 128 VLFFCCFLLLPFYVFAAPLLKFLGQPDDVAEQSGLVALWLIPLHFSFAFQFPLQRFLQSQ 187

Query: 182 LKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCP 241
           LKNQVIAW+SL  L VNVLTSWL VYVLDFGV+GAA+ALDISWWV+  GL+ Y + G CP
Sbjct: 188 LKNQVIAWISLASLGVNVLTSWLLVYVLDFGVIGAAIALDISWWVIVIGLFIYTSCGWCP 247

Query: 242 LTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMS 301
            TW+GFS QAF GLWE+ KLS A+GVMLCLENWYYRILILMTGY KNATLAVDALSVCMS
Sbjct: 248 STWTGFSAQAFCGLWEFVKLSAASGVMLCLENWYYRILILMTGYFKNATLAVDALSVCMS 307

Query: 302 INGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDK 361
           INGW++MIPLAF AATGVRV+NELGAGNGKGA FATIVSV QS+++GLI CVIIM LH+K
Sbjct: 308 INGWEIMIPLAFFAATGVRVSNELGAGNGKGAKFATIVSVVQSSIVGLIFCVIIMSLHNK 367

Query: 362 VALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIG 421
           +ALIFTSS+ V+ EVD L+ LLAITILLNSVQPVLSGVA+G+GWQA VAY+NLGCYYIIG
Sbjct: 368 IALIFTSSSSVIQEVDNLALLLAITILLNSVQPVLSGVAVGAGWQALVAYVNLGCYYIIG 427

Query: 422 LPLGFLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAGIAKQRLQKWSNP 481
           LPLGFLIGWVFKLGV GIWGGMIFGGT VQTVIL IIT R DW+KEA  A+  + KWS  
Sbjct: 428 LPLGFLIGWVFKLGVKGIWGGMIFGGTAVQTVILVIITMRSDWDKEAEKARINVNKWSQS 487

Query: 482 NPD 484
            PD
Sbjct: 488 KPD 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356508053|ref|XP_003522776.1| PREDICTED: protein TRANSPARENT TESTA 12 [Glycine max] Back     alignment and taxonomy information
>gi|255545860|ref|XP_002513990.1| multidrug resistance pump, putative [Ricinus communis] gi|223547076|gb|EEF48573.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224067011|ref|XP_002302325.1| predicted protein [Populus trichocarpa] gi|222844051|gb|EEE81598.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449469827|ref|XP_004152620.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] gi|449513094|ref|XP_004164229.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|255586693|ref|XP_002533972.1| multidrug resistance pump, putative [Ricinus communis] gi|223526044|gb|EEF28410.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.924 0.934 0.669 1.6e-164
TAIR|locus:2142544489 AT5G10420 [Arabidopsis thalian 0.912 0.916 0.616 2.8e-153
TAIR|locus:2172477491 AT5G44050 "AT5G44050" [Arabido 0.922 0.922 0.602 2e-152
TAIR|locus:2206960494 AT1G33110 "AT1G33110" [Arabido 0.932 0.927 0.485 1.6e-116
TAIR|locus:2037980494 AT1G33090 "AT1G33090" [Arabido 0.932 0.927 0.483 1e-114
TAIR|locus:2037960494 AT1G33080 "AT1G33080" [Arabido 0.924 0.919 0.479 2.9e-112
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.914 0.927 0.459 3.8e-110
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.916 0.903 0.439 4.4e-107
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.904 0.888 0.436 1.5e-106
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.918 0.863 0.437 8.3e-106
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1601 (568.6 bits), Expect = 1.6e-164, P = 1.6e-164
 Identities = 304/454 (66%), Positives = 358/454 (78%)

Query:    27 LTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNF 86
             L  R+ +E+KKLWQIVGPAIFSR+++Y+M +ITQAFAGHLGD+ELAAISI N V VGFNF
Sbjct:    30 LKDRILVETKKLWQIVGPAIFSRVTTYSMLVITQAFAGHLGDLELAAISIVNNVTVGFNF 89

Query:    87 GLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQ 146
             GLLLGMASALETLCGQAFGAK+YHMLG+YMQRSWIV               TP+LK LGQ
Sbjct:    90 GLLLGMASALETLCGQAFGAKKYHMLGVYMQRSWIVLFFCCVLLLPTYIFTTPVLKFLGQ 149

Query:   147 PDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFV 206
             PDD+AELSG VA+W+IPLHF+F   FPL RFLQCQLKN+V A+ + V L+V++L  WLFV
Sbjct:   150 PDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAAVALVVHILVCWLFV 209

Query:   207 YVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAG 266
               L  GVVG    + ISWWV    L  Y+  GGCPLTW+G S++A +GLWE+ KLS ++G
Sbjct:   210 DGLKLGVVGTVATISISWWVNVLILLVYSTCGGCPLTWTGLSSEALTGLWEFLKLSASSG 269

Query:   267 VMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELG 326
             VMLCLENWYYRILI+MTG L+NA +AVD+LS+CM+INGW+MMIPLAF A TGVRVANELG
Sbjct:   270 VMLCLENWYYRILIIMTGNLQNARIAVDSLSICMAINGWEMMIPLAFFAGTGVRVANELG 329

Query:   327 AGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAIT 386
             AGNGKGA FATIVSV QS +IGL   V+IM+LH+++A IF+SS  VL  V+KLS LLA T
Sbjct:   330 AGNGKGARFATIVSVTQSLIIGLFFWVLIMLLHNQIAWIFSSSVAVLDAVNKLSLLLAFT 389

Query:   387 ILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLXXXXXXXXXXXX 446
             +LLNSVQPVLSGVA+GSGWQ+ VAYINLGCYY IG+PLGFL+GW FKL            
Sbjct:   390 VLLNSVQPVLSGVAVGSGWQSYVAYINLGCYYCIGVPLGFLMGWGFKLGVMGIWGGMIFG 449

Query:   447 XTFVQTVILAIITARCDWEKEAGIAKQRLQKWSN 480
              T VQT+IL+ IT RCDWEKEA  A  R+ KWSN
Sbjct:   450 GTAVQTMILSFITMRCDWEKEAQKASARINKWSN 483
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8K0H1S47A1_MOUSENo assigned EC number0.30220.95920.8306yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_II0465
hypothetical protein (492 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-162
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 8e-55
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-51
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-43
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-37
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 9e-33
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-31
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 6e-30
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 3e-28
pfam01554161 pfam01554, MatE, MatE 1e-27
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-26
pfam01554161 pfam01554, MatE, MatE 1e-24
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 5e-22
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-20
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 6e-20
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 7e-13
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-11
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 1e-08
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 3e-08
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 3e-07
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-06
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 2e-06
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 1e-05
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 2e-05
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-05
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 5e-05
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 7e-05
COG0728518 COG0728, MviN, Uncharacterized membrane protein, p 1e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-04
COG2244480 COG2244, RfbX, Membrane protein involved in the ex 9e-04
PRK10367441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 0.001
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 0.001
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.002
TIGR02900488 TIGR02900, spore_V_B, stage V sporulation protein 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  467 bits (1203), Expect = e-162
 Identities = 188/436 (43%), Positives = 281/436 (64%), Gaps = 3/436 (0%)

Query: 34  ESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMA 93
           E+KKL ++  P + + +  Y++++++  F GHLG +ELAA S+A++      F +LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 94  SALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAEL 153
           SAL+TLCGQAFGAK Y ++G+Y+QR+ ++L L C  +   ++   P+L LLGQ  ++A L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 154 SGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGV 213
           +G    W+IP  F++A   PL R+LQ Q     + ++SLV LL+N+L ++L V+VL  G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 214 VGAALALDISWWVLCFGLYGYAAF-GGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLE 272
           +GAALA  IS+W++   L  Y  F  G   TW GFS +AF G   + KL++ + +MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 273 NWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKG 332
            W + IL+L+ G L   T+A+ A S+C++      MIPL    A  VRV NELGAGN K 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 333 AGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSV 392
           A  A IV++  S +IG+++ +++++L D  A +FTS  +V+A V  L  +LA+  + + +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 393 QPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGGIWGGMIFGGTFVQT 452
           Q VLSGV  G G Q   AY+NL  YY+IGLP+G L+ +V  LG+ G+W G+I  G  +Q 
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIA-GLILQA 418

Query: 453 VILAIITARCDWEKEA 468
           VIL +I  R DW+KEA
Sbjct: 419 VILLLIILRTDWDKEA 434

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|234052 TIGR02900, spore_V_B, stage V sporulation protein B Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 491
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 99.98
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.89
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.89
PRK00187 464 multidrug efflux protein NorA; Provisional 99.88
PRK10189 478 MATE family multidrug exporter; Provisional 99.88
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.87
PRK01766 456 multidrug efflux protein; Reviewed 99.87
TIGR01695502 mviN integral membrane protein MviN. This model re 99.8
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.8
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.77
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.76
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.74
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.72
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.7
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.7
PRK10459492 colanic acid exporter; Provisional 99.68
PRK15099416 O-antigen translocase; Provisional 99.65
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.63
COG2244480 RfbX Membrane protein involved in the export of O- 99.6
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.34
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.24
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.23
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.06
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.7
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.37
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.37
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.31
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.2
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.12
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.0
COG4267467 Predicted membrane protein [Function unknown] 97.76
COG4267 467 Predicted membrane protein [Function unknown] 82.04
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-56  Score=435.44  Aligned_cols=434  Identities=26%  Similarity=0.398  Sum_probs=410.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCccc
Q 011186           31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH  110 (491)
Q Consensus        31 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~  110 (491)
                      .++..|+++++++|+++++++..+++.+|++++||++++++++.+++.++..+ ...+..|++.+..+.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence            56689999999999999999999999999999999999999999999999998 88899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHH
Q 011186          111 MLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW  189 (491)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  189 (491)
                      ++++..++++.++++++++..++ +++.++++.+++.++++.+.+..|+++..++.|+..+...+.+.+|+.||++.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999777765 89999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-hC-CCcchhHHHHHHHHHHHHHHHHHHHHhcCC--CccCCCCchhhhcchHHHHHHHHHH
Q 011186          190 VSLVGLLVNVLTSWLFVYV-LD-FGVVGAALALDISWWVLCFGLYGYAAFGGC--PLTWSGFSTQAFSGLWEYTKLSVAA  265 (491)
Q Consensus       190 ~~i~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~p~  265 (491)
                      .++++.++|+++|++|+++ ++ +|+.|+++||++++.+.+++..+++.+++.  .....+..+.+++.+|++++.|.|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999997 57 999999999999999999999999888752  3333334455668999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHH
Q 011186          266 GVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQST  345 (491)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (491)
                      +++++.+...+...+.+++++|  ++++|+|+++.++.++..++..+++++..|.+++++|++|++++|+..+.+..+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHH
Q 011186          346 LIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLG  425 (491)
Q Consensus       346 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~  425 (491)
                      .++...+++++++++++..+|++|+|+.+.+..++++.++..++++.+.+..+.+||.||+|.++..++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 011186          426 FLIGWVFKLGVGGIWGGMIFGGTFVQTVILAIITARCDWEKEAG  469 (491)
Q Consensus       426 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (491)
                      +++..+. +|..|+|++.. .++.+..++..+++++++|+++..
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  450 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFP-LSLILRAILLLLRLRRGRWRRKAV  450 (455)
T ss_pred             HHHhhhc-ccchHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhh
Confidence            9999433 99999999999 999999999999999988888643

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 3e-17
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 179/424 (42%), Gaps = 42/424 (9%)
Query: 29  SRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTV---IVGFN 85
            R   E+  L ++  P + + ++   M  +    AG +  +++AA+SIA ++    + F 
Sbjct: 5   HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG 64
Query: 86  FGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLG 145
            GLL+    AL  +  Q  GA R H +   + +  I+              + P++ +L 
Sbjct: 65  VGLLM----ALVPVVAQLNGAGRQHKIPFEVHQGLILALLV----------SVPIIAVLF 110
Query: 146 QPD------DVAELSGT-------VAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSL 192
           Q        DV E   T         ++ +P +  F      T  +       VI ++  
Sbjct: 111 QTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFI-- 168
Query: 193 VGLLVNVLTSWLFVY----VLDFGVVGAALALDISWWVLCFGLYGYAAFG---GCPLTWS 245
            GLL+N+  +W+FVY      + G VG  +A  I +W++   L  Y            + 
Sbjct: 169 -GLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227
Query: 246 GFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGW 305
            F       L    +L       L  E   + ++ L+   L +  +A  A  V ++ +  
Sbjct: 228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSL 285
Query: 306 QMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALI 365
             M P++  AA  +RV ++LG  + KGA  A  V +        I  ++ ++  +++AL+
Sbjct: 286 VFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALL 345
Query: 366 FTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLG 425
           +T +  V+A   +L    AI   +++VQ V +G   G      + +     Y+++GLP G
Sbjct: 346 YTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTG 405
Query: 426 FLIG 429
           +++G
Sbjct: 406 YILG 409

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-75
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  244 bits (624), Expect = 1e-75
 Identities = 92/431 (21%), Positives = 181/431 (41%), Gaps = 15/431 (3%)

Query: 28  TSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFG 87
             R   E+  L ++  P + + ++   M  +    AG +  +++AA+SIA ++ +     
Sbjct: 4   VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-IL 62

Query: 88  LLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQP 147
             +G+  AL  +  Q  GA R H +   + +  I+  L    ++        +++ +   
Sbjct: 63  FGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVE 122

Query: 148 DDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVY 207
           + +A  +      +I    ++     L  F       +    +  +GLL+N+  +W+FVY
Sbjct: 123 EAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVY 182

Query: 208 ----VLDFGVVGAALALDISWWVLCFGLYGYAAFGG---CPLTWSGFSTQAFSGLWEYTK 260
                 + G VG  +A  I +W++   L  Y            +  F       L    +
Sbjct: 183 GKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242

Query: 261 LSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVR 320
           L       L  E   + ++ L+   L +  +A  A  V ++ +    M P++  AA  +R
Sbjct: 243 LGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIR 300

Query: 321 VANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLS 380
           V ++LG  + KGA  A  V +        I  ++ ++  +++AL++T +  V+A   +L 
Sbjct: 301 VGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLL 360

Query: 381 FLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWV-----FKLG 435
              AI   +++VQ V +G   G      + +     Y+++GLP G+++G         LG
Sbjct: 361 LFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLG 420

Query: 436 VGGIWGGMIFG 446
             G W G I G
Sbjct: 421 AKGFWLGFIIG 431

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.84
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 88.0
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 86.58
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.2e-48  Score=390.76  Aligned_cols=430  Identities=22%  Similarity=0.359  Sum_probs=394.7

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccCc
Q 011186           29 SRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKR  108 (491)
Q Consensus        29 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~  108 (491)
                      ...++..|++++.++|.+++++...+++.+|+.+++|+|++++|+++++.++..+ ...+..|++.+..+.+++++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3456789999999999999999999999999999999999999999999999877 677889999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHH
Q 011186          109 YHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIA  188 (491)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  188 (491)
                      +++.++.++.++.+...+++++.++..+.++++.+++.+++..+.+..|+++.+++.++..+.....+++++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998877777788888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-h---CCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCcc---CCCCchhhhcchHHHHHH
Q 011186          189 WVSLVGLLVNVLTSWLFVYV-L---DFGVVGAALALDISWWVLCFGLYGYAAFGGCPLT---WSGFSTQAFSGLWEYTKL  261 (491)
Q Consensus       189 ~~~i~~~~~~i~l~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~  261 (491)
                      ..++++.++|++++++++.. +   ++|+.|+++++.+++.+..++..++.++++...+   ++++...+++..|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999974 3   6899999999999999999888777776532211   122234456789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 011186          262 SVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSV  341 (491)
Q Consensus       262 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~~~~~~~~~~  341 (491)
                      +.|.+++++.+.+.+.+++.++++++  ++++++|+++.++.++..++..+++++..|.+++++|++|+++.++..+++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999985  8899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhHhhhhcCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 011186          342 AQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIG  421 (491)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  421 (491)
                      ++...++++.+++++++++++..+|.+|+++++.+..++++++++.++.+++.+..+.+++.||+|.+++.++.+.|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHH----hc-CCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 011186          422 LPLGFLIGWV----FK-LGVGGIWGGMIFGGTFVQTVILAIITARC  462 (491)
Q Consensus       422 i~l~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  462 (491)
                      +|+++++...    ++ +|..|+|+++. +++.+..++..++++|.
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~-~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFI-IGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHH-HHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999999943    34 99999999999 99999988777666654
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00