Citrus Sinensis ID: 011191

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
MFKKIMKGRKPSKSDPNDQSLYGFPQRNPIANVVVNHSSRAGPGLPSPNSGSPASVVATPPPMFSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKEVEEQRELTWKRLADVAEQRRGEDMVTV
cHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
mfkkimkgrkpsksdpndqslygfpqrnpianvvvnhssragpglpspnsgspasvvatpppmfsieplplfrdvpvseRQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINifrclppashentgqevvdpeeddpylepswphLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLldlfdsedprEREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIingfalpmkEEHKLFLVRAllplhkpkpvamyHQQLSYCITQFVEKDYKLADTVIRGLlkywpltncqkEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKEVEEQRELTWKRLADVAEqrrgedmvtv
mfkkimkgrkpsksdpndqslYGFPQRNPIANVVVNHSSRAGPGLPSPNSGSPASVVATPPPMFSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKlldlfdsedpREREYLKTILHRIygkfmvhrpFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEkesrakeveeqreltwkrladvaeqrrgedmvtv
MFKKIMKGRKPSKSDPNDQSLYGFPQRNPIANVVVNHSSRAgpglpspnsgspasVVATPPPMFSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHsgigelleilgsiiNGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKevlflgeleevleATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYeekesrakeveeQRELTWKRLADVAEQRRGEDMVTV
****************************************************************SIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLP*******************YLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEEC****************************************
***************************************************************************PVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEE**********************WKRLA**************
*****************DQSLYGFPQRNPIANVVVNHSSRA**************VVATPPPMFSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASH**************PYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQN***************RELTWKRLADVA***********
*****************************************************************IEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPA*********VDP**DDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKEVEEQRELTWKRLADVAEQR********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFKKIMKGRKPSKSDPNDQSLYGFPQRNPIANVVVNHSSRAGPGLPSPNSGSPASVVATPPPMFSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELxxxxxxxxxxxxxxxxxxxxxRELTWKRLADVAEQRRGEDMVTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query491 2.2.26 [Sep-21-2011]
O04375495 Serine/threonine protein yes no 0.993 0.985 0.782 0.0
O04376499 Serine/threonine protein no no 0.981 0.965 0.804 0.0
Q9SV41497 Serine/threonine protein no no 0.967 0.955 0.637 1e-180
Q8RW96522 Serine/threonine protein no no 0.983 0.925 0.631 1e-179
Q8LF36492 Serine/threonine protein no no 0.922 0.920 0.649 1e-178
Q9LVE2546 Serine/threonine protein no no 0.983 0.884 0.603 1e-177
Q9LU89510 Serine/threonine protein no no 0.843 0.811 0.702 1e-175
Q93YV6500 Serine/threonine protein no no 0.885 0.87 0.578 1e-156
Q9ZQY6477 Serine/threonine protein no no 0.957 0.985 0.570 1e-155
Q28653586 Serine/threonine-protein yes no 0.841 0.704 0.548 1e-137
>sp|O04375|2A5A_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1 Back     alignment and function desciption
 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/496 (78%), Positives = 446/496 (89%), Gaps = 8/496 (1%)

Query: 1   MFKKIMKG--RKPSKSDPNDQSLYGF--PQRN-PIANVVVNHSSRAGPGLPSPNSGSPAS 55
           MFKKIMKG  RK SK++ ND S+YGF  P R+ P +N++VNH+SR      SPNS + A+
Sbjct: 1   MFKKIMKGANRKASKAEANDSSMYGFDPPGRSGPGSNMIVNHASRGSLVPSSPNSMAAAT 60

Query: 56  VVATPPPMFSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLL 115
               PPPM+S+EPLPLFRDV VSERQ+LFLRKLQ+CCFQ DF DT+K+ REKEIKRQTLL
Sbjct: 61  T--QPPPMYSVEPLPLFRDVSVSERQSLFLRKLQICCFQFDFTDTLKNAREKEIKRQTLL 118

Query: 116 ELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWP 175
           ELVDFIQSG+ K+TE CQEEM+KMIS+NIFRCLPPASHENTGQE  D EE++PYLEPSWP
Sbjct: 119 ELVDFIQSGAGKLTEVCQEEMVKMISVNIFRCLPPASHENTGQEPADLEEEEPYLEPSWP 178

Query: 176 HLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGK 235
           HLQL+YELLLRY+V SDTDTK+AKRYIDHSFVL+LL+LF++EDPREREYLKTILHRIYGK
Sbjct: 179 HLQLIYELLLRYIVPSDTDTKVAKRYIDHSFVLRLLELFETEDPREREYLKTILHRIYGK 238

Query: 236 FMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALL 295
           FMVHRPFIRKA+N+IFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFL+RAL+
Sbjct: 239 FMVHRPFIRKAMNHIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLIRALI 298

Query: 296 PLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVL 355
           PLHKPKP+AMYHQQLSYCI QFVEKDYKLADTVIRGLLK+WP+TNC KEVLFLGELEEVL
Sbjct: 299 PLHKPKPIAMYHQQLSYCIVQFVEKDYKLADTVIRGLLKFWPVTNCTKEVLFLGELEEVL 358

Query: 356 EATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFE 415
           EATQ  EFQRCMVPLF+QIARCL+SS+FQVAERALFLWNNEH+V LIAQNR VILPIIF 
Sbjct: 359 EATQTVEFQRCMVPLFQQIARCLSSSNFQVAERALFLWNNEHVVGLIAQNRGVILPIIFA 418

Query: 416 ALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKEVEEQRELTWKR 475
           +LEKNI+SHWNQAVHGL+ N+++MF++MD ELFEECQ QYEEK++++K+VEEQR+  W+R
Sbjct: 419 SLEKNIESHWNQAVHGLSANIKRMFMEMDPELFEECQQQYEEKQAKSKQVEEQRQNRWRR 478

Query: 476 LADVAEQRRGED-MVT 490
           L +  E+R  ED M+T
Sbjct: 479 LDEAVEEREREDPMIT 494
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)
>sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1 Back     alignment and function description
>sp|Q9SV41|2A5E_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1 Back     alignment and function description
>sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2 Back     alignment and function description
>sp|Q8LF36|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2 Back     alignment and function description
>sp|Q9LVE2|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2 Back     alignment and function description
>sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1 Back     alignment and function description
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQY6|2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1 Back     alignment and function description
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
255556860494 protein phosphatase 2a, regulatory subun 0.987 0.981 0.864 0.0
224140255493 predicted protein [Populus trichocarpa] 0.991 0.987 0.863 0.0
449451060499 PREDICTED: serine/threonine protein phos 0.997 0.981 0.858 0.0
15242766495 protein phosphatase 2 (formerly 2A), reg 0.993 0.985 0.782 0.0
356533265486 PREDICTED: serine/threonine protein phos 0.973 0.983 0.809 0.0
297806305494 hypothetical protein ARALYDRAFT_487124 [ 0.987 0.981 0.781 0.0
356548341483 PREDICTED: serine/threonine protein phos 0.959 0.975 0.800 0.0
356505271470 PREDICTED: serine/threonine protein phos 0.953 0.995 0.803 0.0
356570780467 PREDICTED: serine/threonine protein phos 0.947 0.995 0.801 0.0
225441169502 PREDICTED: serine/threonine protein phos 0.997 0.976 0.793 0.0
>gi|255556860|ref|XP_002519463.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223541326|gb|EEF42877.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/500 (86%), Positives = 456/500 (91%), Gaps = 15/500 (3%)

Query: 1   MFKKIMKG--RKPSKSDPNDQSLYGFP---QRN----PIANVVVNHSSRAGPGLPSPNSG 51
           M KKIMKG  +KPSKS+ ND   +GF     RN    P +NVVVNH+SR      S N+G
Sbjct: 1   MLKKIMKGGHKKPSKSEGND---FGFGPPGNRNTGSGPTSNVVVNHASRTAAVPVSSNTG 57

Query: 52  SPASVVATPPPMFSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKR 111
           +    V  PPPM S+EPLPLFRDVPVSERQNLFLRKLQVCCFQLDF+DT+KSVREKEIKR
Sbjct: 58  T---AVVAPPPMQSVEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFSDTLKSVREKEIKR 114

Query: 112 QTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLE 171
           QTLLELVDFIQSGS KITE CQEEMI+M+S+NIFRCLPPASHENTGQE  DPEE++PYLE
Sbjct: 115 QTLLELVDFIQSGSGKITEACQEEMIRMVSVNIFRCLPPASHENTGQEATDPEEEEPYLE 174

Query: 172 PSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHR 231
           PSWPHLQLVYELLLRYVVSSDTDTK+AKRYIDHSFVLKLLDLFDSEDPREREYLKTILHR
Sbjct: 175 PSWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHR 234

Query: 232 IYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLV 291
           IYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLV
Sbjct: 235 IYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLV 294

Query: 292 RALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGEL 351
           RAL+PLHKPKP+ +YHQQLSYCI QFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGEL
Sbjct: 295 RALIPLHKPKPITVYHQQLSYCIVQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGEL 354

Query: 352 EEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILP 411
           EEVLEATQ AEFQRCMVPLFRQIARCL SSHFQVAERALFLWNNEHIVSLIAQNR+VILP
Sbjct: 355 EEVLEATQSAEFQRCMVPLFRQIARCLTSSHFQVAERALFLWNNEHIVSLIAQNRSVILP 414

Query: 412 IIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKEVEEQREL 471
           IIFEALEKNIQ+HWNQAVHGLTVNVRKMFL+MD ELFEECQ QY EKESRAKE+EEQRE+
Sbjct: 415 IIFEALEKNIQTHWNQAVHGLTVNVRKMFLEMDMELFEECQRQYTEKESRAKEMEEQREM 474

Query: 472 TWKRLADVAEQRRGEDMVTV 491
           TWKRLADVA QR GEDMVTV
Sbjct: 475 TWKRLADVAAQRGGEDMVTV 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224140255|ref|XP_002323499.1| predicted protein [Populus trichocarpa] gi|222868129|gb|EEF05260.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449451060|ref|XP_004143280.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15242766|ref|NP_195967.1| protein phosphatase 2 (formerly 2A), regulatory subunit B' [Arabidopsis thaliana] gi|75097014|sp|O04375.1|2A5A_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform; Short=AtB' alpha; Short=PP2A, B' subunit, alpha isoform gi|2160690|gb|AAB58900.1| B' regulatory subunit of PP2A [Arabidopsis thaliana] gi|7378631|emb|CAB83307.1| AtB'alpha regulatory subunit of PP2A [Arabidopsis thaliana] gi|27754602|gb|AAO22747.1| unknown protein [Arabidopsis thaliana] gi|332003226|gb|AED90609.1| protein phosphatase 2 (formerly 2A), regulatory subunit B' [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356533265|ref|XP_003535186.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|297806305|ref|XP_002871036.1| hypothetical protein ARALYDRAFT_487124 [Arabidopsis lyrata subsp. lyrata] gi|297316873|gb|EFH47295.1| hypothetical protein ARALYDRAFT_487124 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356548341|ref|XP_003542561.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|356505271|ref|XP_003521415.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|356570780|ref|XP_003553562.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|225441169|ref|XP_002268629.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform [Vitis vinifera] gi|147860819|emb|CAN81062.1| hypothetical protein VITISV_042421 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
TAIR|locus:2085099499 ATB' BETA [Arabidopsis thalian 0.977 0.961 0.732 4.6e-192
TAIR|locus:2142619495 ATB' ALPHA [Arabidopsis thalia 0.993 0.985 0.703 5.3e-191
TAIR|locus:2082677497 AT3G54930 [Arabidopsis thalian 0.975 0.963 0.592 1.4e-151
TAIR|locus:505006470522 ATB' GAMMA [Arabidopsis thalia 0.967 0.909 0.576 5.7e-146
TAIR|locus:2009912492 AT1G13460 [Arabidopsis thalian 0.851 0.849 0.626 8.4e-145
TAIR|locus:2089905546 AT3G21650 [Arabidopsis thalian 0.849 0.763 0.623 1.1e-144
TAIR|locus:2092080477 ATB' DELTA "serine/threonine p 0.843 0.867 0.577 1.8e-126
TAIR|locus:2179499500 AT5G25510 [Arabidopsis thalian 0.975 0.958 0.488 3.4e-125
FB|FBgn0042693984 PP2A-B' "PP2A-B'" [Drosophila 0.857 0.427 0.517 2e-118
ZFIN|ZDB-GENE-040426-2568601 ppp2r5d "protein phosphatase 2 0.845 0.690 0.502 8.4e-113
TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1861 (660.2 bits), Expect = 4.6e-192, P = 4.6e-192
 Identities = 361/493 (73%), Positives = 394/493 (79%)

Query:     1 MFKKIMKG--RKPSKSDPNDQSLYGF--PQRN--PIANVVVNHSSRAXXXXXXXXXXXXX 54
             MFKKIMKG  RKPSKS+ N+ S YG   P     P +NVVV+H+SR              
Sbjct:     1 MFKKIMKGGHRKPSKSEANEPSSYGIGLPDNRSGPGSNVVVSHASRGALVNSSPSP---- 56

Query:    55 XVVATPPP--MFSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQ 112
              V ATPPP  + S+EPLPLFRDVPVSERQ LFLRKLQ CCF  DF DT+K+ R+KEIKRQ
Sbjct:    57 -VTATPPPPPLGSVEPLPLFRDVPVSERQTLFLRKLQNCCFLFDFTDTIKNARDKEIKRQ 115

Query:   113 TLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEP 172
             TLLELVDFIQSGS+KI+E+CQEEMIKMIS+NIFR LPPASHENTGQE  DPEE++PYLEP
Sbjct:   116 TLLELVDFIQSGSSKISESCQEEMIKMISVNIFRSLPPASHENTGQEPADPEEEEPYLEP 175

Query:   173 SWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRI 232
             SWPHLQLVYELLLRYVVS+DTDTK+AKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRI
Sbjct:   176 SWPHLQLVYELLLRYVVSTDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRI 235

Query:   233 YGKFMVHRPFIRKAINNIFYRFIYETERHXXXXXXXXXXXXXXNGFALPMKEEHKLFLVR 292
             YGKFMVHRPFIRKAINNIFYRFIYETERH              NGFALPMKEEHKLFL+R
Sbjct:   236 YGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLIR 295

Query:   293 ALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKXXXXXXXXX 352
              L+PLHKPKP+ +YHQQLSYCI QFVEKDYKLADTVIRGLLKYWP+TNC K         
Sbjct:   296 VLIPLHKPKPIVVYHQQLSYCIVQFVEKDYKLADTVIRGLLKYWPVTNCSKENLFLGELE 355

Query:   353 XXXXATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPI 412
                 ATQ  EFQRCMVPLF+QI RCL SSHFQVAERALFLWNNEHIV LIAQNR+VILPI
Sbjct:   356 EVLEATQPVEFQRCMVPLFQQIGRCLTSSHFQVAERALFLWNNEHIVGLIAQNRSVILPI 415

Query:   413 IFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYXXXXXXXXXXXXQRELT 472
             I+  LEKNIQSHWNQAVHGLT N++KMF++MD ELFEECQ QY            QR+ T
Sbjct:   416 IYPTLEKNIQSHWNQAVHGLTTNIKKMFMEMDPELFEECQRQYEEKQAKSKEVEEQRQYT 475

Query:   473 WKRLADVAEQRRG 485
             WKRLA+ A +R G
Sbjct:   476 WKRLAEAAAERDG 488
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0007165 "signal transduction" evidence=IEA;ISS
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS
TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2568 ppp2r5d "protein phosphatase 2, regulatory subunit B', delta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q147382A5D_HUMANNo assigned EC number0.54800.84110.6860yesno
Q286532A5D_RABITNo assigned EC number0.54800.84110.7047yesno
O043752A5A_ARATHNo assigned EC number0.78220.99380.9858yesno
O043762A5B_ARATHNo assigned EC number0.80440.98160.9659nono
Q9LU892A5N_ARATHNo assigned EC number0.70280.84310.8117nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XVI0351
serine/threonine protein phosphatase 2A (494 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 0.0
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 2e-65
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 3e-14
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  595 bits (1537), Expect = 0.0
 Identities = 242/411 (58%), Positives = 320/411 (77%), Gaps = 9/411 (2%)

Query: 72  FRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQS--GSAKIT 129
             DVP  E ++LFL+KL+ CC   DF+D    ++ KEIKRQTL E+VD++ +     K+T
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60

Query: 130 ENCQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVV 189
           E+  +E+ KMI++NIFR LPP  + +     +DP++D+P+LEPSWPHL LVYE+LLR++ 
Sbjct: 61  EDLYDEIFKMIAVNIFRPLPPIPNPS-----LDPDDDEPFLEPSWPHLSLVYEILLRFIE 115

Query: 190 SSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINN 249
           S   D    K+YIDHSF+ +LLDLFDS DPRER+ LKT LHRIYGKF   RPFIRKAIN+
Sbjct: 116 SPPFDPL--KKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINS 173

Query: 250 IFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQ 309
           I YRFIYETE+ +G+ ELLEILGSIINGFALP+KEEHK FL++ LLPLHK K +++YHQQ
Sbjct: 174 ILYRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQ 233

Query: 310 LSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVP 369
           LSYC+ QF+EKD  LA+ VIRGLLK+WP+TN  KEVLFL ELEE+LE     EFQ+ MVP
Sbjct: 234 LSYCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVP 293

Query: 370 LFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAV 429
           LF+ +ARC++S HFQVAERAL LWNNE+ V+LI+ N  +ILPI+F AL +N ++HWNQ+V
Sbjct: 294 LFKILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSV 353

Query: 430 HGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKEVEEQRELTWKRLADVA 480
             L +NV K+ +++D +LF+EC N+Y+EKE++ K+ E++R+ TW R+A+ A
Sbjct: 354 RNLALNVLKLLMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWARIAEAA 404

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 491
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 97.72
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 91.05
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 87.79
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 83.06
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=7.6e-156  Score=1183.44  Aligned_cols=417  Identities=67%  Similarity=1.121  Sum_probs=412.6

Q ss_pred             CCcCCCCCCCCCChHHhHHHHHHHHhhccccccccCCCCCchHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhh
Q 011191           64 FSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDFNDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISIN  143 (491)
Q Consensus        64 ~~~~~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF~dp~~d~~~Ke~K~~~L~EL~~~v~s~~~~l~e~~~~~i~~Mi~~N  143 (491)
                      ..+++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.++++++++.+|+++++|+++|
T Consensus        40 ~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~n  119 (457)
T KOG2085|consen   40 VELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVN  119 (457)
T ss_pred             CCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHHH
Q 011191          144 IFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPRERE  223 (491)
Q Consensus       144 iFR~lPp~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd  223 (491)
                      |||+|||..++++    +|+|||||++|++|||||+||++|+||++||++|+++||+||||+||++||++||||||||||
T Consensus       120 ifR~lpp~~n~~~----~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe  195 (457)
T KOG2085|consen  120 IFRTLPPSVNPTG----FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRERE  195 (457)
T ss_pred             hhccCCcccCCCc----CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHH
Confidence            9999999999874    899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCc
Q 011191          224 YLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPV  303 (491)
Q Consensus       224 ~LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~  303 (491)
                      +|||+||||||||+++|+|||++|||+||+|||||++|||||||||||||||||||+|||||||+||.|||||||+++++
T Consensus       196 ~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l  275 (457)
T KOG2085|consen  196 FLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSL  275 (457)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcH
Q 011191          304 AMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHF  383 (491)
Q Consensus       304 ~~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hf  383 (491)
                      +.||+||+|||+||++|||+|++.||+||+||||+|||+||||||+||||||++++|.+|++||+|||+|||+|++|+||
T Consensus       276 ~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HF  355 (457)
T KOG2085|consen  276 SLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHF  355 (457)
T ss_pred             cccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 011191          384 QVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAK  463 (491)
Q Consensus       384 qVAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~  463 (491)
                      |||||||++|||+||+++|++|+++|+|||||+||+++++|||++|+++++||+|+|||||++||++|+++|++++.+++
T Consensus       356 QVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~~  435 (457)
T KOG2085|consen  356 QVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKEK  435 (457)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC
Q 011191          464 EVEEQRELTWKRLADVAEQRR  484 (491)
Q Consensus       464 ~~~~~r~~~W~~l~~~A~~~~  484 (491)
                      +.+++|+++|++||++|+.++
T Consensus       436 ~~~~~re~~W~~le~~~~~~~  456 (457)
T KOG2085|consen  436 ETEEKREETWKRLEELAAENP  456 (457)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999998875

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 1e-117
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 1e-116
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 1e-114
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 1e-109
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 1e-104
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/410 (49%), Positives = 280/410 (68%), Gaps = 3/410 (0%)
Query: 73  RDVPVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITEN 131
           RDVP ++++ LF++KL+ CC   DF +D +  ++ KE+KR  L E+V++I      ITE 
Sbjct: 31  RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 90
Query: 132 CQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSS 191
              E++ M ++N+FR LPP+S+  TG E  DPEED+P LE +WPHLQLVYE  LR++ S 
Sbjct: 91  IYPEVVHMFAVNMFRTLPPSSNP-TGAEF-DPEEDEPTLEAAWPHLQLVYEFFLRFLESP 148
Query: 192 DTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIF 251
           D    IAK+YID  FVL+LL+LFDSEDPRER++LKT LHRIYGKF+  R +IRK INNIF
Sbjct: 149 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 208
Query: 252 YRFIYETERHXXXXXXXXXXXXXXNGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLS 311
           YRFIYETE H              NGFALP+KEEHK+FL++ LLPLHK K +++YH QL+
Sbjct: 209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 268
Query: 312 YCITQFVEKDYKLADTVIRGLLKYWPLTNCQKXXXXXXXXXXXXXATQGAEFQRCMVPLF 371
           YC+ QF+EKD  L + V+  LLKYWP T+  K               + +EF + M PLF
Sbjct: 269 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 328
Query: 372 RQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHG 431
           RQ+A+C++S HFQVAERAL+ WNNE+I+SLI+ N   ILPI+F +L +N ++HWN+ +HG
Sbjct: 329 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 388
Query: 432 LTVNVRKMFLDMDAELFEECQNQYXXXXXXXXXXXXQRELTWKRLADVAE 481
           L  N  K+F++M+ +LF++C  Q+            +RE  W ++ ++A+
Sbjct: 389 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAK 438
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 0.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 0.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-169
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
 Score =  545 bits (1405), Expect = 0.0
 Identities = 225/440 (51%), Positives = 314/440 (71%), Gaps = 6/440 (1%)

Query: 46  PSPNSGSPASVVATPPPMFSIEPLPLFRDVPVSERQNLFLRKLQVCCFQLDF-NDTMKSV 104
                   A+    P   F    L   RDVP ++++ LF++KL+ CC   DF +D +  +
Sbjct: 7   AGSRMVVDAANSNGP---FQPVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDL 63

Query: 105 REKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPPASHENTGQEVVDPE 164
           + KE+KR  L E+V++I      ITE    E++ M ++N+FR LPP+S+    +   DPE
Sbjct: 64  KWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEF--DPE 121

Query: 165 EDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREY 224
           ED+P LE +WPHLQLVYE  LR++ S D    IAK+YID  FVL+LL+LFDSEDPRER++
Sbjct: 122 EDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 181

Query: 225 LKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKE 284
           LKT LHRIYGKF+  R +IRK INNIFYRFIYETE H+GI ELLEILGSIINGFALP+KE
Sbjct: 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241

Query: 285 EHKLFLVRALLPLHKPKPVAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKE 344
           EHK+FL++ LLPLHK K +++YH QL+YC+ QF+EKD  L + V+  LLKYWP T+  KE
Sbjct: 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE 301

Query: 345 VLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHIVSLIAQ 404
           V+FL ELEE+L+  + +EF + M PLFRQ+A+C++S HFQVAERAL+ WNNE+I+SLI+ 
Sbjct: 302 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 361

Query: 405 NRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKE 464
           N   ILPI+F +L +N ++HWN+ +HGL  N  K+F++M+ +LF++C  Q++ ++ + K 
Sbjct: 362 NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL 421

Query: 465 VEEQRELTWKRLADVAEQRR 484
             ++RE  W ++ ++A+   
Sbjct: 422 KMKEREEAWVKIENLAKANP 441
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 95.09
1qgr_A 876 Protein (importin beta subunit); transport recepto 94.42
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 93.8
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 93.67
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 93.52
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 93.0
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 92.23
1qgr_A 876 Protein (importin beta subunit); transport recepto 90.34
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 89.55
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 88.88
2x19_B963 Importin-13; nuclear transport, protein transport; 88.29
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 83.95
4fu3_A135 Regulation of nuclear PRE-mRNA domain-containing 1 83.85
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 82.03
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 81.8
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 81.15
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
Probab=100.00  E-value=7.6e-139  Score=1098.85  Aligned_cols=420  Identities=53%  Similarity=0.963  Sum_probs=382.4

Q ss_pred             cCCCCCCCCCChHHhHHHHHHHHhhccccccc-cCCCCCchHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhh
Q 011191           66 IEPLPLFRDVPVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINI  144 (491)
Q Consensus        66 ~~~lp~l~dv~~~e~~~lf~~Kl~~C~~i~DF-~dp~~d~~~Ke~K~~~L~EL~~~v~s~~~~l~e~~~~~i~~Mi~~Ni  144 (491)
                      +++||+|+|||++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++.+||++|+++++||++||
T Consensus        24 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni  103 (449)
T 2npp_B           24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM  103 (449)
T ss_dssp             --------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence            45999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHHHH
Q 011191          145 FRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREY  224 (491)
Q Consensus       145 FR~lPp~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~  224 (491)
                      ||++||.+++++  ..||+|||||+.||+|||||+||++|+|||+|+++|+++||+|||++||++|+++||||||||||+
T Consensus       104 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~  181 (449)
T 2npp_B          104 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF  181 (449)
T ss_dssp             CCCCCCCSSCCS--SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHH
T ss_pred             CCCCCCCCCccc--ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence            999999887754  479999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcc
Q 011191          225 LKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVA  304 (491)
Q Consensus       225 LktiLhrIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~  304 (491)
                      ||++||||||||+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||+.||.|||||||++++++
T Consensus       182 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~  261 (449)
T 2npp_B          182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS  261 (449)
T ss_dssp             HHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHhHHHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHH
Q 011191          305 MYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQ  384 (491)
Q Consensus       305 ~y~~qL~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfq  384 (491)
                      .||+||+||++||++|||+|+..|++||+||||+|||+|||+||+||++||+.++|++|+++++|+|++||+|++|+|||
T Consensus       262 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfq  341 (449)
T 2npp_B          262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ  341 (449)
T ss_dssp             GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred             HhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHhhccccchhhchHHHHHHhhccccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 011191          385 VAERALFLWNNEHIVSLIAQNRNVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLDMDAELFEECQNQYEEKESRAKE  464 (491)
Q Consensus       385 VAErAL~~w~N~~i~~li~~n~~~i~Pii~p~L~~~s~~HWn~~Vr~la~~vlk~l~e~D~~lf~~c~~~~~~~~~~~~~  464 (491)
                      ||||||++|+|++|++++++|++.|+|+|+|+|++++++|||++||++|++|+++|+|||+++|++|+++|+++++++++
T Consensus       342 VAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~  421 (449)
T 2npp_B          342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL  421 (449)
T ss_dssp             HHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCC
Q 011191          465 VEEQRELTWKRLADVAEQRRGED  487 (491)
Q Consensus       465 ~~~~r~~~W~~l~~~A~~~~~~~  487 (491)
                      .+++|+++|++|+++|++++...
T Consensus       422 ~~~~r~~~W~~i~~~A~~~~~~~  444 (449)
T 2npp_B          422 KMKEREEAWVKIENLAKANPQVL  444 (449)
T ss_dssp             TSCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCccc
Confidence            99999999999999999988643
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A* Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 491
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-176
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  495 bits (1276), Expect = e-176
 Identities = 201/343 (58%), Positives = 262/343 (76%), Gaps = 3/343 (0%)

Query: 73  RDVPVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITEN 131
           RDVP ++++ LF++KL+ CC   DF +D +  ++ KE+KR  L E+V++I      ITE 
Sbjct: 2   RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61

Query: 132 CQEEMIKMISINIFRCLPPASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSS 191
              E++ M ++N+FR LPP+S  N      DPEED+P LE +WPHLQLVYE  LR++ S 
Sbjct: 62  IYPEVVHMFAVNMFRTLPPSS--NPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 119

Query: 192 DTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIF 251
           D    IAK+YID  FVL+LL+LFDSEDPRER++LKT LHRIYGKF+  R +IRK INNIF
Sbjct: 120 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 179

Query: 252 YRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQLS 311
           YRFIYETE H+GI ELLEILGSIINGFALP+KEEHK+FL++ LLPLHK K +++YH QL+
Sbjct: 180 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 239

Query: 312 YCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLF 371
           YC+ QF+EKD  L + V+  LLKYWP T+  KEV+FL ELEE+L+  + +EF + M PLF
Sbjct: 240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 299

Query: 372 RQIARCLNSSHFQVAERALFLWNNEHIVSLIAQNRNVILPIIF 414
           RQ+A+C++S HFQVAERAL+ WNNE+I+SLI+ N   ILPI+F
Sbjct: 300 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMF 342

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 92.26
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 90.94
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 89.76
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 89.09
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 88.18
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 83.46
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 82.95
d1q1sc_ 434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 80.44
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 80.1
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-116  Score=895.18  Aligned_cols=342  Identities=58%  Similarity=1.046  Sum_probs=324.0

Q ss_pred             CCCCChHHhHHHHHHHHhhccccccc-cCCCCCchHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhhcccCCC
Q 011191           72 FRDVPVSERQNLFLRKLQVCCFQLDF-NDTMKSVREKEIKRQTLLELVDFIQSGSAKITENCQEEMIKMISINIFRCLPP  150 (491)
Q Consensus        72 l~dv~~~e~~~lf~~Kl~~C~~i~DF-~dp~~d~~~Ke~K~~~L~EL~~~v~s~~~~l~e~~~~~i~~Mi~~NiFR~lPp  150 (491)
                      |+|||++||++||++||++||++||| +||++|+++|++||++|+||++|++++++++||++++++++||++||||++||
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp   80 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP   80 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            68999999999999999999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhcCCCChHHHhccCCHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 011191          151 ASHENTGQEVVDPEEDDPYLEPSWPHLQLVYELLLRYVVSSDTDTKIAKRYIDHSFVLKLLDLFDSEDPREREYLKTILH  230 (491)
Q Consensus       151 ~~~~~~~~~~~d~eedep~~e~sWpHLqlVYeillrfv~s~~~d~~~~k~~id~~Fi~~Ll~lfdSeDprERd~LktiLh  230 (491)
                      .+++.+  ++||+|||||+.|++|||||+||++|+||++|+++|++.+++|||++||.+|+++|+||||||||+||++||
T Consensus        81 ~~~~~~--~~~~~e~d~~~~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~  158 (343)
T d2jaka1          81 SSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLH  158 (343)
T ss_dssp             -----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCccc--cccCccccccccCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            987653  579999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccCchHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhccCCCCCcccchHhH
Q 011191          231 RIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKPVAMYHQQL  310 (491)
Q Consensus       231 rIY~kf~~~R~fIrk~i~n~f~~fi~e~e~h~GIaELLeIlgsIIngfa~PLKeehk~fl~~vLlPLhk~~~~~~y~~qL  310 (491)
                      ||||||+++|++||++|+++|++||||+++|+||+|||||+|||||||++|||+||+.|+.++|+|||++++++.||+||
T Consensus       159 ~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL  238 (343)
T d2jaka1         159 RIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL  238 (343)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCcHHHHHHHhhhhCCCCCChhHhHHHHHHHHHHHhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHH
Q 011191          311 SYCITQFVEKDYKLADTVIRGLLKYWPLTNCQKEVLFLGELEEVLEATQGAEFQRCMVPLFRQIARCLNSSHFQVAERAL  390 (491)
Q Consensus       311 ~~ci~qf~~KDp~La~~vi~~llk~WP~tns~KevlFL~ele~iLe~~~~~~f~~i~~~lF~~ia~cl~S~hfqVAErAL  390 (491)
                      +||++||++|||+|+..+++||+||||+||++|||+||+||++||+.+++++|+++++|+|++||+|++|+|||||||||
T Consensus       239 ~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl  318 (343)
T d2jaka1         239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL  318 (343)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchhHHHHHhhccccchhhchH
Q 011191          391 FLWNNEHIVSLIAQNRNVILPIIFE  415 (491)
Q Consensus       391 ~~w~N~~i~~li~~n~~~i~Pii~p  415 (491)
                      ++|+|++|+++|++|+++|+|+|+|
T Consensus       319 ~~w~N~~~~~li~~n~~~i~Pii~P  343 (343)
T d2jaka1         319 YYWNNEYIMSLISDNAAKILPIMFP  343 (343)
T ss_dssp             GGGGCHHHHHHHHHTHHHHTTTSCC
T ss_pred             HHHCCHHHHHHHHhCccceEeeeCC
Confidence            9999999999999999999999987
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure