Citrus Sinensis ID: 011201
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 491 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SJN2 | 497 | Pentatricopeptide repeat- | yes | no | 0.953 | 0.941 | 0.587 | 1e-165 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.661 | 0.543 | 0.294 | 4e-43 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.572 | 0.376 | 0.327 | 7e-42 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.747 | 0.480 | 0.317 | 4e-41 | |
| O04491 | 607 | Putative pentatricopeptid | no | no | 0.657 | 0.532 | 0.299 | 6e-40 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.857 | 0.558 | 0.251 | 7e-39 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.633 | 0.516 | 0.290 | 2e-38 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.668 | 0.520 | 0.294 | 1e-37 | |
| O49436 | 660 | Pentatricopeptide repeat- | no | no | 0.763 | 0.568 | 0.275 | 1e-37 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.610 | 0.410 | 0.311 | 2e-37 |
| >sp|Q9SJN2|PP187_ARATH Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 583 bits (1502), Expect = e-165, Method: Compositional matrix adjust.
Identities = 280/477 (58%), Positives = 365/477 (76%), Gaps = 9/477 (1%)
Query: 17 SPPPPPAPSIPLPSRPETPPVTLP-SVTLTPTAHHTHLLRFLKTHLLTPTNNQITPSSLL 75
+PP P IP P P+ P +++P ++TL+P+ H++ + FL+ +L P + +TP +LL
Sbjct: 23 TPPLPEIYRIPNPP-PKLPEISIPPTLTLSPSPKHSNFVNFLENNL--PHHQTLTPQTLL 79
Query: 76 HFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFI 135
FL+SK+ +HP + HYDF +F WA+T+D+FRHDH +FL++ RSLA+++RF +L+ +L+F+
Sbjct: 80 GFLRSKIRNHPLYAHYDFAVFNWAATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFV 139
Query: 136 SANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNV 195
+ANPCPCS+ GIFSCPE+E IF A++A+ +A +M+ LLAF+ M++LIDG+P+V +YN
Sbjct: 140 AANPCPCSS-GIFSCPELEPIFRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNT 198
Query: 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG 255
++NG+VK + DKAL FY RM ++R KPDV TFNILI+G+CR+ KFDLAL LFREM+EKG
Sbjct: 199 VVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKG 258
Query: 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315
C PNVVSFNTLIRGF K +EGV MAYEMIELGC FS TCEILVDGLC EGRV AC
Sbjct: 259 CEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDAC 318
Query: 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375
LV+D + VLP +FDY LVEKLCGE A A+E+++ELWKKG P IACTTL+EGL
Sbjct: 319 GLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQTPCFIACTTLVEGL 378
Query: 376 RRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDG 435
R+ + +ASG MEKM+ GILPDSVTFN LL DLC + DA+RLRLLAS+KG +PD
Sbjct: 379 RKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDANRLRLLASSKGYEPDE 438
Query: 436 MTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN----ARKSVR 488
TYH+LVSG+T+E RRKEGE LVNEMLD+ +PD+ TYN MDGLS +RK VR
Sbjct: 439 TTYHVLVSGFTKEGRRKEGEVLVNEMLDKDMLPDIFTYNRLMDGLSCTGKFSRKQVR 495
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 173/329 (52%), Gaps = 4/329 (1%)
Query: 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRM 216
++ ++ + KA +N+ L + M P V YN ++ + +A+ DRM
Sbjct: 175 YNVMISGYCKAGEINNALSVLDRMSV----SPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230
Query: 217 VRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF 276
++ PDV+T+ ILI CR+ A+ L EMR++GC P+VV++N L+ G E +
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290
Query: 277 DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGL 336
DE + +M GC+ + +T I++ +C+ GR + A +L+ D R+G P + L
Sbjct: 291 DEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNIL 350
Query: 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396
+ LC +G G A+++++++ + G P+ ++ L+ G + +K A +E+M+ G
Sbjct: 351 INFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410
Query: 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGEN 456
PD VT+N +L LC G+ DA + S+KG P +TY+ ++ G + + +
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470
Query: 457 LVNEMLDEGFIPDLATYNSYMDGLSNARK 485
L++EM + PD TY+S + GLS K
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGK 499
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 149/299 (49%)
Query: 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL 247
P+V YN+LI GF D AL +D+M P+VVT+N LI G+C+ +K D L
Sbjct: 203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKL 262
Query: 248 FREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307
R M KG PN++S+N +I G E + E + EM G VT L+ G C
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK 322
Query: 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIA 367
EG +A + + R G+ P Y L+ +C GN A+E +D++ +G P+
Sbjct: 323 EGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERT 382
Query: 368 CTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAS 427
TTL++G + EA ++ +M G P VT+N L+ C G+ DA +
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK 442
Query: 428 TKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKS 486
KGL PD ++Y ++SG+ R E + EM+++G PD TY+S + G R++
Sbjct: 443 EKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRT 501
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 183/381 (48%), Gaps = 14/381 (3%)
Query: 104 SFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNA 163
F+H +T+ ++ L +F + VL + N +E ++ A+
Sbjct: 35 GFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMREN---------VGNHMLEGVYVGAMKN 85
Query: 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDR-VK 222
+ + ++ + + FE M D P+V YN +++ V FD+A Y RM RDR +
Sbjct: 86 YGRKGKVQEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRM-RDRGIT 143
Query: 223 PDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNM 282
PDV +F I + FC+ + AL L M +GC NVV++ T++ GF+ E EG +
Sbjct: 144 PDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYEL 203
Query: 283 AYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID-FSRRGVLPKDFDYFGLVEKLC 341
+M+ G T L+ LC +G V K CE ++D +RGVLP F Y ++ LC
Sbjct: 204 FGKMLASGVSLCLSTFNKLLRVLCKKGDV-KECEKLLDKVIKRGVLPNLFTYNLFIQGLC 262
Query: 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSV 401
G A+ +V L ++G P VI LI GL + K EA + KM+ EG+ PDS
Sbjct: 263 QRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY 322
Query: 402 TFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461
T+N L+ C G A+R+ A G PD TY L+ G E L NE
Sbjct: 323 TYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEA 382
Query: 462 LDEGFIPDLATYNSYMDGLSN 482
L +G P++ YN+ + GLSN
Sbjct: 383 LGKGIKPNVILYNTLIKGLSN 403
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 165/324 (50%), Gaps = 1/324 (0%)
Query: 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDR 215
+F+ +N F K ++D F+ + K +P+V +N LING+ K D+ +
Sbjct: 242 VFNILMNKFCKEGNISDAQKVFDEITKR-SLQPTVVSFNTLINGYCKVGNLDEGFRLKHQ 300
Query: 216 MVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERK 275
M + R +PDV T++ LI+ C+ K D A GLF EM ++G PN V F TLI G +
Sbjct: 301 MEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGE 360
Query: 276 FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFG 335
D +M+ G + V LV+G C G ++ A +V RRG+ P Y
Sbjct: 361 IDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTT 420
Query: 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395
L++ C G+ ALE+ E+ + G + + L+ G+ + + ++A + +ML+ G
Sbjct: 421 LIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAG 480
Query: 396 ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGE 455
I PD VT+ +++ C G +L + G P +TY++L++G + + K +
Sbjct: 481 IKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNAD 540
Query: 456 NLVNEMLDEGFIPDLATYNSYMDG 479
L++ ML+ G +PD TYN+ ++G
Sbjct: 541 MLLDAMLNIGVVPDDITYNTLLEG 564
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 113/450 (25%), Positives = 202/450 (44%), Gaps = 29/450 (6%)
Query: 37 VTLPSVTLTPTAHHTHLLRFLKTHLLTPTNNQITPSSLLHFLKSKLHHHPQFTHYDFHIF 96
+T PS T++ + H+ L LL +Q S+ L +F
Sbjct: 29 LTPPSSTISFASPHSAALSSTDVKLLDSLRSQPDDSAALR------------------LF 70
Query: 97 AWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERI 156
AS +F + + I+ L S F ++ +L + ++ C
Sbjct: 71 NLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTS----------T 120
Query: 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRM 216
F + ++ + ++ L + M +P YN ++N V + +M
Sbjct: 121 FLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKM 180
Query: 217 VRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF 276
+KPDV TFN+LI CR + A+ + +M G P+ +F T+++G+ E
Sbjct: 181 SVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDL 240
Query: 277 DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR-GVLPKDFDYFG 335
D + + +M+E GC +S+V+ ++V G C EGRV A + + S + G P + +
Sbjct: 241 DGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNT 300
Query: 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395
LV LC G+ A+E++D + ++G P V ++I GL +L + EA ++++M+
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD 360
Query: 396 ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGE 455
P++VT+N L+ LC + +A L + ++KG+ PD T++ L+ G +
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420
Query: 456 NLVNEMLDEGFIPDLATYNSYMDGLSNARK 485
L EM +G PD TYN +D L + K
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 161/313 (51%), Gaps = 2/313 (0%)
Query: 175 LAFEAMRKLI--DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILI 232
LA + + +L+ + +P+V Y +LI + D+AL D M+ +KPD+ T+N +I
Sbjct: 211 LALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTII 270
Query: 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE 292
G C+ D A + R + KGC P+V+S+N L+R + K++EG + +M C+
Sbjct: 271 RGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCD 330
Query: 293 FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEV 352
+ VT IL+ LC +G++ +A L+ +G+ P + Y L+ C EG +A+E
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390
Query: 353 VDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD 412
++ + G LP ++ T++ L + K +A + K+ + G P+S ++N + L
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450
Query: 413 VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLAT 472
G + A + L + G+DPD +TY+ ++S RE E L+ +M F P + T
Sbjct: 451 SGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT 510
Query: 473 YNSYMDGLSNARK 485
YN + G A +
Sbjct: 511 YNIVLLGFCKAHR 523
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 169/329 (51%), Gaps = 1/329 (0%)
Query: 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRM 216
F ++A K N+ + + E M+ L ++ Y++LIN F + + AL +M
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQNL-GISHNLYTYSILINCFCRRSQLSLALAVLAKM 142
Query: 217 VRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF 276
++ +PD+VT N L++GFC + A+ L +M E G P+ +FNTLI G F +
Sbjct: 143 MKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRA 202
Query: 277 DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGL 336
E V + M+ GC+ VT I+V+GLC G + A L+ + + P Y +
Sbjct: 203 SEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTI 262
Query: 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396
++ LC N AL + E+ KG P+V+ +LI L + +AS L+ M++ I
Sbjct: 263 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 322
Query: 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGEN 456
P+ VTF+ L++ G+ V+A++L + +DPD TY L++G+ +R E ++
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 382
Query: 457 LVNEMLDEGFIPDLATYNSYMDGLSNARK 485
+ M+ + P++ TYN+ + G A++
Sbjct: 383 MFELMISKDCFPNVVTYNTLIKGFCKAKR 411
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 190/389 (48%), Gaps = 14/389 (3%)
Query: 95 IFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEME 154
+F A + SF+ +T ++ S A+S F + +L+ I N I +E
Sbjct: 63 MFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLE-----NRVI-----IE 112
Query: 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYD 214
R F A+ KA+ + + F M + SV +N ++N + + + L FYD
Sbjct: 113 RSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYD 172
Query: 215 RMVRDR----VKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGF 270
+V + P+ ++FN++I C+ + D A+ +FR M E+ C P+ ++ TL+ G
Sbjct: 173 YVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGL 232
Query: 271 FGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKD 330
E + DE V + EM GC S V +L+DGLC +G + + +LV + +G +P +
Sbjct: 233 CKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNE 292
Query: 331 FDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEK 390
Y L+ LC +G A+ +++ + +P+ + TLI GL + R+ +A L+
Sbjct: 293 VTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSS 352
Query: 391 MLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENR 450
M + G + ++ L+ L G+ +A L + KG P+ + Y +LV G RE +
Sbjct: 353 MEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGK 412
Query: 451 RKEGENLVNEMLDEGFIPDLATYNSYMDG 479
E + ++N M+ G +P+ TY+S M G
Sbjct: 413 PNEAKEILNRMIASGCLPNAYTYSSLMKG 441
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 2/302 (0%)
Query: 175 LAFEAMRKLIDG--RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILI 232
LA E + + + +P+V Y +L++GF K + D+A + M D +KP+ V FN LI
Sbjct: 407 LALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466
Query: 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE 292
S FC+ + A+ +FREM KGC P+V +FN+LI G + + + +MI G
Sbjct: 467 SAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVV 526
Query: 293 FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEV 352
++VT L++ G + +A +LV + +G + Y L++ LC G A +
Sbjct: 527 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSL 586
Query: 353 VDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD 412
+++ + G+ PS I+C LI GL R EA ++M+ G PD VTFN L+ LC
Sbjct: 587 FEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCR 646
Query: 413 VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLAT 472
GR D + +G+ PD +T++ L+S + + L++E +++GF+P+ T
Sbjct: 647 AGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRT 706
Query: 473 YN 474
++
Sbjct: 707 WS 708
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 491 | ||||||
| 449445824 | 486 | PREDICTED: pentatricopeptide repeat-cont | 0.967 | 0.977 | 0.616 | 1e-175 | |
| 225447824 | 480 | PREDICTED: pentatricopeptide repeat-cont | 0.971 | 0.993 | 0.611 | 1e-172 | |
| 225466900 | 588 | PREDICTED: pentatricopeptide repeat-cont | 0.957 | 0.799 | 0.611 | 1e-171 | |
| 297823431 | 497 | hypothetical protein ARALYDRAFT_902735 [ | 0.957 | 0.945 | 0.584 | 1e-164 | |
| 79568177 | 497 | pentatricopeptide repeat-containing prot | 0.953 | 0.941 | 0.587 | 1e-164 | |
| 110742004 | 497 | putative salt-inducible protein [Arabido | 0.953 | 0.941 | 0.587 | 1e-163 | |
| 357511073 | 485 | Pentatricopeptide repeat-containing prot | 0.896 | 0.907 | 0.614 | 1e-160 | |
| 296081510 | 481 | unnamed protein product [Vitis vinifera] | 0.910 | 0.929 | 0.584 | 1e-159 | |
| 298204661 | 605 | unnamed protein product [Vitis vinifera] | 0.887 | 0.720 | 0.579 | 1e-155 | |
| 356503811 | 506 | PREDICTED: pentatricopeptide repeat-cont | 0.928 | 0.901 | 0.560 | 1e-147 |
| >gi|449445824|ref|XP_004140672.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36240-like [Cucumis sativus] gi|449487417|ref|XP_004157616.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36240-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 298/483 (61%), Positives = 384/483 (79%), Gaps = 8/483 (1%)
Query: 6 KKLPPIL---IHNKSPPPPPAPSIPLPSRPETPPVTLPSVTLTPTAHHTHLLRFLKTHLL 62
KKLPPIL + PP P P+ LP P+TP L +++ + H+ LL FLK+HL
Sbjct: 2 KKLPPILRKLQTPQPTPPSPLPNAILPPSPQTPVAPLLNLSFSSPHHYNQLLHFLKSHLT 61
Query: 63 TPTNNQITPSSLLHFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASS 122
P TP+SLLHFLKSKLH HP+FTHYDFH+F WASTIDSFRHDH+TF ++ R+LA++
Sbjct: 62 FP----FTPNSLLHFLKSKLHFHPKFTHYDFHVFNWASTIDSFRHDHSTFAWMARTLATT 117
Query: 123 YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRK 182
RF EL S+L F++++PCPCS DGIFSCP+ E IF F+++A+ +A + ++ + AF++MRK
Sbjct: 118 DRFFELTSLLRFLASSPCPCS-DGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDSMRK 176
Query: 183 LIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFD 242
LIDGRPSV +YN+LINGFVK FDKALGFY RM+ DRVKPDV TFNILISG+CRN +F
Sbjct: 177 LIDGRPSVVVYNILINGFVKSGRFDKALGFYSRMLSDRVKPDVYTFNILISGYCRNSQFV 236
Query: 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILV 302
AL LF+EMREKGC+PNV+SFNTLI+GFF ERKF++G+ +AYEMIELGC+FSSVTCEIL+
Sbjct: 237 QALELFKEMREKGCSPNVISFNTLIKGFFRERKFEDGIALAYEMIELGCKFSSVTCEILM 296
Query: 303 DGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNL 362
DGL EG++ +ACE+++DFSR+ VLPKD+DY+G+VE LCG+GNAG A+EVVDELW +GN+
Sbjct: 297 DGLSREGKIFEACEILLDFSRKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNV 356
Query: 363 PSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422
PS I TTLI+GLR+ + +A + E+ML+ G++PDSVTFN LL+DLC+V +TV+A++L
Sbjct: 357 PSFITSTTLIDGLRKEGRVNDAMNVTERMLEVGMIPDSVTFNSLLQDLCNVRKTVEANKL 416
Query: 423 RLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482
RLLAS+KG +PD TY+ LVSGYT E + EG+ LV EMLD+ FIPD+ATYN MD L N
Sbjct: 417 RLLASSKGFEPDNKTYYTLVSGYTMEGNKVEGQRLVEEMLDKEFIPDIATYNRLMDRLLN 476
Query: 483 ARK 485
K
Sbjct: 477 THK 479
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447824|ref|XP_002268032.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36240-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/489 (61%), Positives = 383/489 (78%), Gaps = 12/489 (2%)
Query: 1 MAGLKKKLPPILIHNKSPPPPPAPSIPLPSRPETPPVTLPSVTLTPTAHHTHLLRFLKTH 60
M L++ LP L PP P P+ + P+ P+++L T+HH L +FLK H
Sbjct: 3 MNKLRQTLPKPL----HPPSQFTPPTASPNLISSTPI--PTLSLANTSHH-QLHQFLKAH 55
Query: 61 LLTPTNNQITPSSLLHFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLA 120
L TP+ TP LL FLK+KLH+HP+F+H+D HIF WA+TIDSFRHDH+T+ ++V++LA
Sbjct: 56 L-TPS---FTPQDLLIFLKNKLHYHPKFSHFDLHIFTWAATIDSFRHDHSTYEWMVKTLA 111
Query: 121 SSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAM 180
+ RF +LHS+L + +NPCPCS DGIFSCP E IF FA+NAF + R+ D +AF +M
Sbjct: 112 ITDRFDDLHSLLQGMVSNPCPCS-DGIFSCPRSEPIFRFALNAFCRVGRLEDAEIAFASM 170
Query: 181 RKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240
R++IDG+PSV+++N+LING+VKCRE +K + Y++M++DRVKPDV TFN LIS CRN +
Sbjct: 171 RRMIDGKPSVAMHNILINGYVKCREHEKVMTVYEKMIKDRVKPDVFTFNSLISSCCRNSQ 230
Query: 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEI 300
F LAL +F+EM++KGC+PNVVSFNTLI+G F ERKF+EGV MAYEM+ELGCEFS+VTCEI
Sbjct: 231 FGLALEMFKEMKDKGCSPNVVSFNTLIKGSFRERKFEEGVGMAYEMLELGCEFSNVTCEI 290
Query: 301 LVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG 360
LVDGLC EGRVL+A +L+IDFS +G LP FDYF L+E LCGE N ALE++D+LW+KG
Sbjct: 291 LVDGLCREGRVLEAFDLLIDFSGKGALPNGFDYFCLIEALCGEENVDRALELLDQLWRKG 350
Query: 361 NLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDAD 420
N PS IACTTLIEGLRR K EA LMEKML+EGILPDSVT NCLL+DLC+VGR+ +A+
Sbjct: 351 NAPSSIACTTLIEGLRRFGKTEEAFQLMEKMLREGILPDSVTCNCLLQDLCEVGRSFEAN 410
Query: 421 RLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGL 480
+LRLLAS+KGLD DGMT++ILV+GY+RE +RKEG+ L++EMLD GFIPDLA+YN M+GL
Sbjct: 411 KLRLLASSKGLDSDGMTFNILVNGYSREGKRKEGKRLLDEMLDLGFIPDLASYNRLMNGL 470
Query: 481 SNARKSVRQ 489
SN S R
Sbjct: 471 SNGGSSHRH 479
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466900|ref|XP_002264269.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36240-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 296/484 (61%), Positives = 382/484 (78%), Gaps = 14/484 (2%)
Query: 4 LKKKLP-PILIHNKSPPPPPAPSIPLPSRPETPPVTLPSVTLTPTAHHTHLLRFLKTHLL 62
+K LP P+ ++ PP +P++ +PS P +P+++L T+HH L +FLK HL
Sbjct: 114 FRKTLPKPLHPLSQFTPPTASPNL-IPSTP------IPTLSLANTSHH-QLHQFLKAHL- 164
Query: 63 TPTNNQITPSSLLHFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASS 122
TP+ TP LL FLK+KLH+HP+F H+D HIF WA+TIDSFRHD +T+ ++V++LA +
Sbjct: 165 TPS---FTPQDLLIFLKNKLHYHPKFAHFDLHIFTWAATIDSFRHDQSTYEWMVKTLAIT 221
Query: 123 YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRK 182
RF +LHS+L + +NPCP S DGIFSCP E IF FA+NAF + R+ D ++FE+MR+
Sbjct: 222 DRFDDLHSLLQGMVSNPCPYS-DGIFSCPRSEPIFRFALNAFCRVGRLEDAEISFESMRR 280
Query: 183 LIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFD 242
+IDG+PSV++YN+LING+V CRE +K + Y++M++DRVKPDV TFN LIS CRN +F
Sbjct: 281 MIDGKPSVAMYNILINGYVNCREHEKVMTVYEKMIKDRVKPDVFTFNSLISSCCRNSQFG 340
Query: 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILV 302
LAL +F+EM++KGC+PNVVSFNTLI+G F ERKF+EG+ MAYEM+ELGCEFS+VTCEILV
Sbjct: 341 LALEMFKEMKDKGCSPNVVSFNTLIKGSFRERKFEEGIGMAYEMLELGCEFSNVTCEILV 400
Query: 303 DGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNL 362
DGLC EGRVL+AC+L+IDFS +G LP FDYF L+E LCGE N ALE++D+LW+KGN
Sbjct: 401 DGLCREGRVLEACDLLIDFSGKGALPNGFDYFCLIEALCGEENVDRALELLDQLWRKGNA 460
Query: 363 PSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422
PS IACT IEGLRR RK EA LMEKML+EGILPDSVT NCLL+DLC+VGR+ +A+ L
Sbjct: 461 PSSIACTAFIEGLRRFRKTEEAFQLMEKMLREGILPDSVTCNCLLQDLCEVGRSFEANEL 520
Query: 423 RLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482
RLLAS+KGLD DGMT++ILV+GY+RE +RKEG+ L+NEMLD GFIPDLA+YN M+GLSN
Sbjct: 521 RLLASSKGLDSDGMTFNILVNGYSREGKRKEGKRLLNEMLDLGFIPDLASYNRLMNGLSN 580
Query: 483 ARKS 486
S
Sbjct: 581 GGSS 584
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823431|ref|XP_002879598.1| hypothetical protein ARALYDRAFT_902735 [Arabidopsis lyrata subsp. lyrata] gi|297325437|gb|EFH55857.1| hypothetical protein ARALYDRAFT_902735 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/479 (58%), Positives = 364/479 (75%), Gaps = 9/479 (1%)
Query: 17 SPPPPPAPSIPLPSRPETPPVTLP-SVTLTPTAHHTHLLRFLKTHLLTPTNNQITPSSLL 75
+PP P IP P P+ P +++P ++TL+P+ H++ + FL+ ++ P + +TP +LL
Sbjct: 23 TPPSPEIYRIPNPP-PKLPEISIPPTLTLSPSPKHSNFVNFLENNI--PHHQTLTPQNLL 79
Query: 76 HFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFI 135
FL+SKL HHP + HYDF +F WA+T+D+FRHDH +FL++ RSLA+++RF +L+ +L+F+
Sbjct: 80 GFLRSKLRHHPLYAHYDFAVFNWAATLDTFRHDHDSFLWMSRSLAATHRFHDLYRLLSFV 139
Query: 136 SANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNV 195
+ANPCPCS+ GIFSCPE+E IF A++A+ +A +M+ LLAF+ M++LIDG+P+V +YN
Sbjct: 140 AANPCPCSS-GIFSCPELEPIFRSAIDAYCRAGKMDYALLAFDTMKRLIDGKPNVGVYNT 198
Query: 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG 255
++NG+VK + DKAL FY RM ++R KPDV TFN LI+G+CR+ KFDLAL LFREM+EKG
Sbjct: 199 VVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNTLINGYCRSSKFDLALDLFREMKEKG 258
Query: 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315
C PNVVSFNTLIRGF K +EG+ MAYEMIE+GC FS TCEILVDGLC EGRV AC
Sbjct: 259 CEPNVVSFNTLIRGFLSRGKIEEGIKMAYEMIEIGCRFSEATCEILVDGLCREGRVDDAC 318
Query: 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375
LVID S VLP FDY LVEKLCGE A A+E+V+ELWKKG P IACTTL+EGL
Sbjct: 319 GLVIDLSNSRVLPSGFDYGSLVEKLCGENKADRAMEMVEELWKKGKTPCFIACTTLVEGL 378
Query: 376 RRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDG 435
R+ + +ASG ME+M+ GILPDSVTFN LL DLC R+ DA+ LRLLAS+KG +PD
Sbjct: 379 RKSGRTEKASGFMEEMMNAGILPDSVTFNLLLRDLCSSDRSTDANSLRLLASSKGYEPDE 438
Query: 436 MTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN----ARKSVRQT 490
TYH+LVSG+T+E RRKEGE LVNEMLD+ +PD+ TYN MDGLS +RK VR +
Sbjct: 439 TTYHVLVSGFTKEGRRKEGEVLVNEMLDKDMLPDIFTYNRLMDGLSCSGKFSRKQVRMS 497
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79568177|ref|NP_181166.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75206301|sp|Q9SJN2.1|PP187_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36240 gi|4510352|gb|AAD21441.1| putative salt-inducible protein [Arabidopsis thaliana] gi|330254126|gb|AEC09220.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/477 (58%), Positives = 365/477 (76%), Gaps = 9/477 (1%)
Query: 17 SPPPPPAPSIPLPSRPETPPVTLP-SVTLTPTAHHTHLLRFLKTHLLTPTNNQITPSSLL 75
+PP P IP P P+ P +++P ++TL+P+ H++ + FL+ +L P + +TP +LL
Sbjct: 23 TPPLPEIYRIPNPP-PKLPEISIPPTLTLSPSPKHSNFVNFLENNL--PHHQTLTPQTLL 79
Query: 76 HFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFI 135
FL+SK+ +HP + HYDF +F WA+T+D+FRHDH +FL++ RSLA+++RF +L+ +L+F+
Sbjct: 80 GFLRSKIRNHPLYAHYDFAVFNWAATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFV 139
Query: 136 SANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNV 195
+ANPCPCS+ GIFSCPE+E IF A++A+ +A +M+ LLAF+ M++LIDG+P+V +YN
Sbjct: 140 AANPCPCSS-GIFSCPELEPIFRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNT 198
Query: 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG 255
++NG+VK + DKAL FY RM ++R KPDV TFNILI+G+CR+ KFDLAL LFREM+EKG
Sbjct: 199 VVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKG 258
Query: 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315
C PNVVSFNTLIRGF K +EGV MAYEMIELGC FS TCEILVDGLC EGRV AC
Sbjct: 259 CEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDAC 318
Query: 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375
LV+D + VLP +FDY LVEKLCGE A A+E+++ELWKKG P IACTTL+EGL
Sbjct: 319 GLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQTPCFIACTTLVEGL 378
Query: 376 RRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDG 435
R+ + +ASG MEKM+ GILPDSVTFN LL DLC + DA+RLRLLAS+KG +PD
Sbjct: 379 RKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDANRLRLLASSKGYEPDE 438
Query: 436 MTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN----ARKSVR 488
TYH+LVSG+T+E RRKEGE LVNEMLD+ +PD+ TYN MDGLS +RK VR
Sbjct: 439 TTYHVLVSGFTKEGRRKEGEVLVNEMLDKDMLPDIFTYNRLMDGLSCTGKFSRKQVR 495
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110742004|dbj|BAE98941.1| putative salt-inducible protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 280/477 (58%), Positives = 365/477 (76%), Gaps = 9/477 (1%)
Query: 17 SPPPPPAPSIPLPSRPETPPVTLP-SVTLTPTAHHTHLLRFLKTHLLTPTNNQITPSSLL 75
+PP P IP P P+ P +++P ++TL+P+ H++ + FL+ +L P + +TP +LL
Sbjct: 23 TPPLPEIYRIPNPP-PKLPEISIPPTLTLSPSPKHSNFVNFLENNL--PHHQTLTPQTLL 79
Query: 76 HFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFI 135
FL+SK+ +HP + HYDF +F WA+T+D+FRHDH +FL++ RSLA+++RF +L+ +L+F+
Sbjct: 80 GFLRSKIRNHPLYAHYDFAVFNWAATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFV 139
Query: 136 SANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNV 195
+ANPCPCS+ GIFSCPE+E IF A++A+ +A +M+ LLAF+ M++LIDG+P+V +YN
Sbjct: 140 AANPCPCSS-GIFSCPELEPIFRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNT 198
Query: 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG 255
++NG+VK + DKAL FY RM ++R KPDV TFNILI+G+CR+ KFDLAL LFREM+EKG
Sbjct: 199 VVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKG 258
Query: 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315
C PNVVSFNTLIRGF K +EGV MAYEMIELGC FS TCEILVDGLC EGRV AC
Sbjct: 259 CEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDAC 318
Query: 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375
LV+D + VLP +FDY LVEKLCGE A A+E+++ELWKKG P IACTTL+EGL
Sbjct: 319 GLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQTPCFIACTTLVEGL 378
Query: 376 RRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDG 435
R+ + +ASG MEKM+ GILPDSVTFN LL DLC + DA+RLRLLAS+KG +PD
Sbjct: 379 RKSGRTEKASGFMEKMMNAGILPDSVTFNLLLGDLCSSDHSTDANRLRLLASSKGYEPDE 438
Query: 436 MTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN----ARKSVR 488
TYH+LVSG+T+E RRKEGE LVNEMLD+ +PD+ TYN MDGLS +RK VR
Sbjct: 439 TTYHVLVSGFTKEGRRKEGEVLVNEMLDKDMLPDIFTYNRLMDGLSCTGKFSRKQVR 495
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511073|ref|XP_003625825.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500840|gb|AES82043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/446 (61%), Positives = 347/446 (77%), Gaps = 6/446 (1%)
Query: 44 LTPTAHHTHLLRFLKTHLLTPTNNQITPSSLLHFLKSKLHHHPQFTHYDFHIFAWASTID 103
L+PT H+TH L FL HL P +TP +L HFLKSKLHHHP FTH+DFH+F+WAST+D
Sbjct: 37 LSPTQHYTHFLHFLNHHLTPP----LTPQTLTHFLKSKLHHHPSFTHFDFHLFSWASTLD 92
Query: 104 SFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNA 163
+F H+HT++ ++ R+LA S+RFS L ++L FIS NPC CS IFSCP+ E IF FA+
Sbjct: 93 TFSHNHTSYEWMTRTLALSHRFSLLRTLLTFISTNPCQCSQ-AIFSCPQTEPIFRFAIQY 151
Query: 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKP 223
+ KA + +D + AF MR+LIDG+PSVS+ N+LI+GFVK FD+A FY++MV+DR+KP
Sbjct: 152 YCKAFKFDDAVYAFNVMRRLIDGKPSVSVCNILIHGFVKSGRFDRAFEFYNQMVKDRIKP 211
Query: 224 DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMA 283
DV TFNILISG+CR+ KF AL +F EMR+ GC+PNVV+FNTLI+G F E + DEG+ M
Sbjct: 212 DVFTFNILISGYCRDFKFGFALEMFDEMRKMGCHPNVVTFNTLIKGLFRECRVDEGIGMV 271
Query: 284 YEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE 343
YEMIELGC+ S VTCEILVDGLC EGRV + C+L+++FS+RGVLPK +DYF LVE LCG+
Sbjct: 272 YEMIELGCQLSDVTCEILVDGLCKEGRVSQVCDLLMEFSKRGVLPKGYDYFVLVEILCGK 331
Query: 344 GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK-EGILPDSVT 402
G A ALEV+ ELW KG +PS+I+C +I+GLR L K EA L+EKMLK EG++ D VT
Sbjct: 332 GEAFKALEVIYELWSKGCVPSLISCIVMIDGLRGLGKIEEAMRLVEKMLKEEGMVLDVVT 391
Query: 403 FNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462
FN +L+DLCD GRT DA+RLRLLAS+KGL+PD MTY ILV+GY E + EGE +VNEML
Sbjct: 392 FNSVLQDLCDAGRTEDANRLRLLASSKGLEPDAMTYKILVAGYRGEGNQSEGELVVNEML 451
Query: 463 DEGFIPDLATYNSYMDGLSNARKSVR 488
D+GFIPDLA+YN MD LSN ++ R
Sbjct: 452 DKGFIPDLASYNKLMDALSNCQRPNR 477
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081510|emb|CBI20033.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 286/489 (58%), Positives = 363/489 (74%), Gaps = 42/489 (8%)
Query: 1 MAGLKKKLPPILIHNKSPPPPPAPSIPLPSRPETPPVTLPSVTLTPTAHHTHLLRFLKTH 60
M L++ LP L PP P P+ + P+ P+++L T+HH L +FLK H
Sbjct: 34 MNKLRQTLPKPL----HPPSQFTPPTASPNLISSTPI--PTLSLANTSHH-QLHQFLKAH 86
Query: 61 LLTPTNNQITPSSLLHFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLA 120
L TP+ TP LL FLK+KLH+HP+F+H+D HIF WA+TIDSFRHDH+T+ ++V++LA
Sbjct: 87 L-TPS---FTPQDLLIFLKNKLHYHPKFSHFDLHIFTWAATIDSFRHDHSTYEWMVKTLA 142
Query: 121 SSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAM 180
+ RF +LHS+L + +NPCPCS DGIFSCP M
Sbjct: 143 ITDRFDDLHSLLQGMVSNPCPCS-DGIFSCPRM--------------------------- 174
Query: 181 RKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240
IDG+PSV+++N+LING+VKCRE +K + Y++M++DRVKPDV TFN LIS CRN +
Sbjct: 175 ---IDGKPSVAMHNILINGYVKCREHEKVMTVYEKMIKDRVKPDVFTFNSLISSCCRNSQ 231
Query: 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEI 300
F LAL +F+EM++KGC+PNVVSFNTLI+G F ERKF+EGV MAYEM+ELGCEFS+VTCEI
Sbjct: 232 FGLALEMFKEMKDKGCSPNVVSFNTLIKGSFRERKFEEGVGMAYEMLELGCEFSNVTCEI 291
Query: 301 LVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG 360
LVDGLC EGRVL+A +L+IDFS +G LP FDYF L+E LCGE N ALE++D+LW+KG
Sbjct: 292 LVDGLCREGRVLEAFDLLIDFSGKGALPNGFDYFCLIEALCGEENVDRALELLDQLWRKG 351
Query: 361 NLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDAD 420
N PS IACTTLIEGLRR K EA LMEKML+EGILPDSVT NCLL+DLC+VGR+ +A+
Sbjct: 352 NAPSSIACTTLIEGLRRFGKTEEAFQLMEKMLREGILPDSVTCNCLLQDLCEVGRSFEAN 411
Query: 421 RLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGL 480
+LRLLAS+KGLD DGMT++ILV+GY+RE +RKEG+ L++EMLD GFIPDLA+YN M+GL
Sbjct: 412 KLRLLASSKGLDSDGMTFNILVNGYSREGKRKEGKRLLDEMLDLGFIPDLASYNRLMNGL 471
Query: 481 SNARKSVRQ 489
SN S R
Sbjct: 472 SNGGSSHRH 480
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204661|emb|CBI25159.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/483 (57%), Positives = 359/483 (74%), Gaps = 47/483 (9%)
Query: 5 KKKLP-PILIHNKSPPPPPAPSIPLPSRPETPPVTLPSVTLTPTAHHTHLLRFLKTHLLT 63
+K LP P+ ++ PP +P++ +PS P +P+++L T+HH L +FLK HL T
Sbjct: 115 RKTLPKPLHPLSQFTPPTASPNL-IPSTP------IPTLSLANTSHH-QLHQFLKAHL-T 165
Query: 64 PTNNQITPSSLLHFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSY 123
P+ TP LL FLK+KLH+HP+F H+D HIF WA+TIDSFRHD +T+ ++V++LA +
Sbjct: 166 PS---FTPQDLLIFLKNKLHYHPKFAHFDLHIFTWAATIDSFRHDQSTYEWMVKTLAITD 222
Query: 124 RFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL 183
RF +LHS+L + +NPCP S DGIFS +
Sbjct: 223 RFDDLHSLLQGMVSNPCPYS-DGIFS---------------------------------M 248
Query: 184 IDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDL 243
IDG+PSV++YN+LING+V CRE +K + Y++M++DRVKPDV TFN LIS CRN +F L
Sbjct: 249 IDGKPSVAMYNILINGYVNCREHEKVMTVYEKMIKDRVKPDVFTFNSLISSCCRNSQFGL 308
Query: 244 ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVD 303
AL +F+EM++KGC+PNVVSFNTLI+G F ERKF+EG+ MAYEM+ELGCEFS+VTCEILVD
Sbjct: 309 ALEMFKEMKDKGCSPNVVSFNTLIKGSFRERKFEEGIGMAYEMLELGCEFSNVTCEILVD 368
Query: 304 GLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP 363
GLC EGRVL+AC+L+IDFS +G LP FDYF L+E LCGE N ALE++D+LW+KGN P
Sbjct: 369 GLCREGRVLEACDLLIDFSGKGALPNGFDYFCLIEALCGEENVDRALELLDQLWRKGNAP 428
Query: 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLR 423
S IACT IEGLRR RK EA LMEKML+EGILPDSVT NCLL+DLC+VGR+ +A+ LR
Sbjct: 429 SSIACTAFIEGLRRFRKTEEAFQLMEKMLREGILPDSVTCNCLLQDLCEVGRSFEANELR 488
Query: 424 LLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNA 483
LLAS+KGLD DGMT++ILV+GY+RE +RKEG+ L+NEMLD GFIPDLA+YN M+GLSN
Sbjct: 489 LLASSKGLDSDGMTFNILVNGYSREGKRKEGKRLLNEMLDLGFIPDLASYNRLMNGLSNG 548
Query: 484 RKS 486
S
Sbjct: 549 GSS 551
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503811|ref|XP_003520696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36240-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/469 (56%), Positives = 340/469 (72%), Gaps = 13/469 (2%)
Query: 23 APSIPLPSRPETPPVTLPSVTLTPTAHHTHLLRFLKTHLLTPTNNQITPSSLLHFLKSKL 82
P PLPS P P T H+ L FLK+H P TP +LLHFLKSKL
Sbjct: 13 GPCCPLPSPPA------PRDTAVSPVHYARFLDFLKSHWAPP----FTPDTLLHFLKSKL 62
Query: 83 HHHPQFTHYDFHIFAWAST-IDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCP 141
HHHP F+H+DFH+F WAS+ +DSFRH H TF ++ RSLAS++R +L ++L+ IS+NPCP
Sbjct: 63 HHHPSFSHFDFHLFTWASSSLDSFRHTHLTFHWMARSLASTHRLPQLRTLLHLISSNPCP 122
Query: 142 CSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV 201
CS IFSCP+ + IF +++AF K+N +ND + AF +M KLIDG+P+V++ N+LI+ FV
Sbjct: 123 CS-PSIFSCPQTQPIFSLSIHAFSKSNLLNDAVSAFHSMCKLIDGKPNVAVCNLLIHAFV 181
Query: 202 KCREFDKALGFYDRMV-RDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNV 260
K + AL FY MV + RVKPDV TFNILISG+CRN +F+LAL +F EM + GC PNV
Sbjct: 182 KRGSLNAALQFYREMVLKHRVKPDVFTFNILISGYCRNSQFNLALEMFHEMGKMGCLPNV 241
Query: 261 VSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320
V+FNTLI+G F E +E + MA EM++LG FSSV+CEILV GLC EGRVL+ACEL+++
Sbjct: 242 VTFNTLIKGLFREGNVEEAIGMAREMVQLGIRFSSVSCEILVQGLCKEGRVLQACELLLE 301
Query: 321 FSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRK 380
F + VLP+ FD F L+E LCGEG A ALEVV ELW G++PS++AC +++GLR L K
Sbjct: 302 FCEKKVLPEGFDCFALLEVLCGEGYAMRALEVVYELWNGGSVPSLVACIVMVDGLRGLGK 361
Query: 381 GVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHI 440
EA L+E+ML+EG++ D VTFNC+L D+CD RT +A+RLRLLAS+KG +PD MTY I
Sbjct: 362 IDEARRLVERMLEEGLVLDVVTFNCVLRDICDKRRTNEANRLRLLASSKGFEPDEMTYRI 421
Query: 441 LVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQ 489
LV GY E R++GE LV+EMLD GFIPDLA+YN M GLSN R+ R+
Sbjct: 422 LVMGYIGEGGREQGELLVDEMLDMGFIPDLASYNQLMSGLSNCRRPTRR 470
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 491 | ||||||
| TAIR|locus:2049465 | 497 | AT2G36240 "AT2G36240" [Arabido | 0.881 | 0.871 | 0.594 | 2.1e-141 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.661 | 0.543 | 0.294 | 2.5e-42 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.745 | 0.479 | 0.321 | 5.2e-41 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.668 | 0.439 | 0.307 | 7.9e-41 | |
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.657 | 0.532 | 0.299 | 8.7e-40 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.690 | 0.587 | 0.283 | 2.1e-38 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.668 | 0.521 | 0.279 | 4.4e-38 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.668 | 0.520 | 0.294 | 4.5e-38 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.633 | 0.516 | 0.290 | 6.2e-38 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.773 | 0.671 | 0.280 | 7e-38 |
| TAIR|locus:2049465 AT2G36240 "AT2G36240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1383 (491.9 bits), Expect = 2.1e-141, P = 2.1e-141
Identities = 260/437 (59%), Positives = 329/437 (75%)
Query: 56 FLKTHLLTPTNNQITPXXXXXXXXXXXXXXPQFTHYDFHIFAWASTIDSFRHDHTTFLFI 115
FL+ +L P + +TP P + HYDF +F WA+T+D+FRHDH +FL++
Sbjct: 62 FLENNL--PHHQTLTPQTLLGFLRSKIRNHPLYAHYDFAVFNWAATLDTFRHDHDSFLWM 119
Query: 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLL 175
RSLA+++RF +L+ +L+F++ANPCPCS+ GIFSCPE+E IF A++A+ +A +M+ LL
Sbjct: 120 SRSLAATHRFDDLYRLLSFVAANPCPCSS-GIFSCPELEPIFRSAIDAYCRARKMDYALL 178
Query: 176 AFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235
AF+ M++LIDG+P+V +YN ++NG+VK + DKAL FY RM ++R KPDV TFNILI+G+
Sbjct: 179 AFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILINGY 238
Query: 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS 295
CR+ KFDLAL LFREM+EKGC PNVVSFNTLIRGF K +EGV MAYEMIELGC FS
Sbjct: 239 CRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSE 298
Query: 296 VTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDE 355
TCEILVDGLC EGRV AC LV+D + VLP +FDY LVEKLCGE A A+E+++E
Sbjct: 299 ATCEILVDGLCREGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEE 358
Query: 356 LWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGR 415
LWKKG P IACTTL+EGLR+ + +ASG MEKM+ GILPDSVTFN LL DLC
Sbjct: 359 LWKKGQTPCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDH 418
Query: 416 TVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNS 475
+ DA+RLRLLAS+KG +PD TYH+LVSG+T+E RRKEGE LVNEMLD+ +PD+ TYN
Sbjct: 419 STDANRLRLLASSKGYEPDETTYHVLVSGFTKEGRRKEGEVLVNEMLDKDMLPDIFTYNR 478
Query: 476 YMDGLSNARK-SVRQTR 491
MDGLS K S +Q R
Sbjct: 479 LMDGLSCTGKFSRKQVR 495
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 97/329 (29%), Positives = 173/329 (52%)
Query: 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRM 216
++ ++ + KA +N+ L + M P V YN ++ + +A+ DRM
Sbjct: 175 YNVMISGYCKAGEINNALSVLDRMSV----SPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230
Query: 217 VRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF 276
++ PDV+T+ ILI CR+ A+ L EMR++GC P+VV++N L+ G E +
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290
Query: 277 DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGL 336
DE + +M GC+ + +T I++ +C+ GR + A +L+ D R+G P + L
Sbjct: 291 DEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNIL 350
Query: 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396
+ LC +G G A+++++++ + G P+ ++ L+ G + +K A +E+M+ G
Sbjct: 351 INFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410
Query: 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGEN 456
PD VT+N +L LC G+ DA + S+KG P +TY+ ++ G + + +
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470
Query: 457 LVNEMLDEGFIPDLATYNSYMDGLSNARK 485
L++EM + PD TY+S + GLS K
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGK 499
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 5.2e-41, P = 5.2e-41
Identities = 122/380 (32%), Positives = 184/380 (48%)
Query: 105 FRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAF 164
F+H +T+ ++ L +F + VL + N N +E ++ A+ +
Sbjct: 36 FKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMREN---VGNH------MLEGVYVGAMKNY 86
Query: 165 VKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDR-VKP 223
+ ++ + + FE M D P+V YN +++ V FD+A Y RM RDR + P
Sbjct: 87 GRKGKVQEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRM-RDRGITP 144
Query: 224 DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMA 283
DV +F I + FC+ + AL L M +GC NVV++ T++ GF+ E EG +
Sbjct: 145 DVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELF 204
Query: 284 YEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID-FSRRGVLPKDFDYFGLVEKLCG 342
+M+ G T L+ LC +G V K CE ++D +RGVLP F Y ++ LC
Sbjct: 205 GKMLASGVSLCLSTFNKLLRVLCKKGDV-KECEKLLDKVIKRGVLPNLFTYNLFIQGLCQ 263
Query: 343 EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVT 402
G A+ +V L ++G P VI LI GL + K EA + KM+ EG+ PDS T
Sbjct: 264 RGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYT 323
Query: 403 FNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462
+N L+ C G A+R+ A G PD TY L+ G E L NE L
Sbjct: 324 YNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEAL 383
Query: 463 DEGFIPDLATYNSYMDGLSN 482
+G P++ YN+ + GLSN
Sbjct: 384 GKGIKPNVILYNTLIKGLSN 403
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 440 (159.9 bits), Expect = 7.9e-41, P = 7.9e-41
Identities = 102/332 (30%), Positives = 166/332 (50%)
Query: 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGR--PSVSIYNVLINGFVKCREFDKALGFYD 214
++ ++A +++ R N A +++++ + P+V YN+LI GF D AL +D
Sbjct: 172 YNAVLDATIRSKR-NISF-AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFD 229
Query: 215 RMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274
+M P+VVT+N LI G+C+ +K D L R M KG PN++S+N +I G E
Sbjct: 230 KMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREG 289
Query: 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYF 334
+ E + EM G VT L+ G C EG +A + + R G+ P Y
Sbjct: 290 RMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYT 349
Query: 335 GLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394
L+ +C GN A+E +D++ +G P+ TTL++G + EA ++ +M
Sbjct: 350 SLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN 409
Query: 395 GILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEG 454
G P VT+N L+ C G+ DA + KGL PD ++Y ++SG+ R E
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEA 469
Query: 455 ENLVNEMLDEGFIPDLATYNSYMDGLSNARKS 486
+ EM+++G PD TY+S + G R++
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRT 501
|
|
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 97/324 (29%), Positives = 165/324 (50%)
Query: 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDR 215
+F+ +N F K ++D F+ + K +P+V +N LING+ K D+ +
Sbjct: 242 VFNILMNKFCKEGNISDAQKVFDEITKR-SLQPTVVSFNTLINGYCKVGNLDEGFRLKHQ 300
Query: 216 MVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERK 275
M + R +PDV T++ LI+ C+ K D A GLF EM ++G PN V F TLI G +
Sbjct: 301 MEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGE 360
Query: 276 FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFG 335
D +M+ G + V LV+G C G ++ A +V RRG+ P Y
Sbjct: 361 IDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTT 420
Query: 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395
L++ C G+ ALE+ E+ + G + + L+ G+ + + ++A + +ML+ G
Sbjct: 421 LIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAG 480
Query: 396 ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGE 455
I PD VT+ +++ C G +L + G P +TY++L++G + + K +
Sbjct: 481 IKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNAD 540
Query: 456 NLVNEMLDEGFIPDLATYNSYMDG 479
L++ ML+ G +PD TYN+ ++G
Sbjct: 541 MLLDAMLNIGVVPDDITYNTLLEG 564
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 97/342 (28%), Positives = 176/342 (51%)
Query: 146 GIFSCPEMERIFHF--AVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKC 203
G+ + IF F ++A K + + + E M++L ++ YN+LIN F +
Sbjct: 75 GMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISH-NLYTYNILINCFCRR 133
Query: 204 REFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSF 263
+ AL +M++ +P +VT + L++G+C K+ A+ L +M E G P+ ++F
Sbjct: 134 SQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITF 193
Query: 264 NTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSR 323
TLI G F K E V + M++ GC+ + VT ++V+GLC G + A L+
Sbjct: 194 TTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA 253
Query: 324 RGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVE 383
+ Y +++ LC + AL + E+ KG P+VI ++LI L + +
Sbjct: 254 AKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSD 313
Query: 384 ASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443
AS L+ M++ I P+ VTFN L++ G+ V+A++L + +DPD TY L++
Sbjct: 314 ASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 373
Query: 444 GYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARK 485
G+ +R E +++ M+ + P++ TYN+ ++G A++
Sbjct: 374 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR 415
|
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| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 4.4e-38, P = 4.4e-38
Identities = 92/329 (27%), Positives = 173/329 (52%)
Query: 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRM 216
F+ ++A K N+ + E M+ L + Y++ IN F + + AL +M
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISH-DLYTYSIFINCFCRRSQLSLALAVLAKM 144
Query: 217 VRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF 276
++ +PD+VT + L++G+C +K+ A+ L +M E G P+ +F TLI G F K
Sbjct: 145 MKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKA 204
Query: 277 DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGL 336
E V + +M++ GC+ VT +V+GLC G + A L+ + + +
Sbjct: 205 SEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTI 264
Query: 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396
++ LC + +A+++ E+ KG P+V+ +LI L + +AS L+ ML++ I
Sbjct: 265 IDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKI 324
Query: 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGEN 456
P+ VTFN L++ G+ V+A++L + +DPD +TY++L++G+ NR E +
Sbjct: 325 NPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQ 384
Query: 457 LVNEMLDEGFIPDLATYNSYMDGLSNARK 485
+ M+ + +P++ TYN+ ++G ++
Sbjct: 385 MFKFMVSKDCLPNIQTYNTLINGFCKCKR 413
|
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 4.5e-38, P = 4.5e-38
Identities = 97/329 (29%), Positives = 169/329 (51%)
Query: 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRM 216
F ++A K N+ + + E M+ L ++ Y++LIN F + + AL +M
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQNLGISH-NLYTYSILINCFCRRSQLSLALAVLAKM 142
Query: 217 VRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF 276
++ +PD+VT N L++GFC + A+ L +M E G P+ +FNTLI G F +
Sbjct: 143 MKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRA 202
Query: 277 DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGL 336
E V + M+ GC+ VT I+V+GLC G + A L+ + + P Y +
Sbjct: 203 SEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTI 262
Query: 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396
++ LC N AL + E+ KG P+V+ +LI L + +AS L+ M++ I
Sbjct: 263 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 322
Query: 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGEN 456
P+ VTF+ L++ G+ V+A++L + +DPD TY L++G+ +R E ++
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 382
Query: 457 LVNEMLDEGFIPDLATYNSYMDGLSNARK 485
+ M+ + P++ TYN+ + G A++
Sbjct: 383 MFELMISKDCFPNVVTYNTLIKGFCKAKR 411
|
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| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 6.2e-38, P = 6.2e-38
Identities = 91/313 (29%), Positives = 160/313 (51%)
Query: 175 LAFEAMRKLIDG--RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILI 232
LA + + +L+ +P+V Y +LI + D+AL D M+ +KPD+ T+N +I
Sbjct: 211 LALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTII 270
Query: 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE 292
G C+ D A + R + KGC P+V+S+N L+R + K++EG + +M C+
Sbjct: 271 RGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCD 330
Query: 293 FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEV 352
+ VT IL+ LC +G++ +A L+ +G+ P + Y L+ C EG +A+E
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390
Query: 353 VDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD 412
++ + G LP ++ T++ L + K +A + K+ + G P+S ++N + L
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450
Query: 413 VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLAT 472
G + A + L + G+DPD +TY+ ++S RE E L+ +M F P + T
Sbjct: 451 SGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT 510
Query: 473 YNSYMDGLSNARK 485
YN + G A +
Sbjct: 511 YNIVLLGFCKAHR 523
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| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 112/399 (28%), Positives = 199/399 (49%)
Query: 105 FRHDHTTFLFIVRSLASSYRFSELHSVL-NFISA---NPCPCSNDGIFSCPEME------ 154
F+H H + ++R L S FS S+L IS + S+ + E E
Sbjct: 35 FQHTHESISILLRLLLSGNLFSHAQSLLLQVISGKIHSQFFTSSSLLHYLTESETSKTKF 94
Query: 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR--PSVSIYNVLINGFVKCREFDKALGF 212
R++ +N++V++ +N L+ +++D P + +N L+ V F++ F
Sbjct: 95 RLYEVIINSYVQSQSLN---LSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSF 151
Query: 213 YDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272
++ + +V DV +F ILI G C + + + L E+ E G +PNVV + TLI G
Sbjct: 152 FNEN-KSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCK 210
Query: 273 ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332
+ + ++ ++ +EM +LG + T +L++GL G + E+ GV P +
Sbjct: 211 KGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYT 270
Query: 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML 392
Y ++ +LC +G A +V DE+ ++G +++ TLI GL R K EA+ ++++M
Sbjct: 271 YNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMK 330
Query: 393 KEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRK 452
+GI P+ +T+N L++ C VG+ A L ++GL P +TY+ILVSG+ R+
Sbjct: 331 SDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTS 390
Query: 453 EGENLVNEMLDEGFIPDLATYNSYMDGLS---NARKSVR 488
+V EM + G P TY +D + N K+++
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQ 429
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SJN2 | PP187_ARATH | No assigned EC number | 0.5870 | 0.9531 | 0.9416 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | scaffold_402236.1 | annotation not avaliable (497 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 491 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-15 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-11 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 6e-20
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 223 PDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGF 270
PDVVT+N LI G+C+ K + AL LF EM+++G PNV +++ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 2e-17
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR 237
P V YN LI+G+ K + ++AL ++ M + +KP+V T++ILI G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 7e-15
Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 29/328 (8%)
Query: 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGF 212
M +FH VNA V+AN V + LI+G + + KA G
Sbjct: 491 MFEVFHEMVNAGVEAN---------------------VHTFGALIDGCARAGQVAKAFGA 529
Query: 213 YDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMR--EKGCNPNVVSFNTLIRGF 270
Y M VKPD V FN LIS ++ D A + EM+ +P+ ++ L++
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 271 FGERKFDEGVNMAYEMI-ELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK 329
+ D + Y+MI E + + I V+ +G A + D ++GV P
Sbjct: 590 ANAGQVDRAKEV-YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 330 DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLME 389
+ + LV+ G+ A E++ + K+G ++ ++L+ + +A L E
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 390 KMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK--GLDPDGMTYHILVSGYTR 447
+ + P T N L+ LC+ + A L +L+ K GL P+ +TY IL+ R
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKA--LEVLSEMKRLGLCPNTITYSILLVASER 766
Query: 448 ENRRKEGENLVNEMLDEGFIPDLATYNS 475
++ G +L+++ ++G P+L
Sbjct: 767 KDDADVGLDLLSQAKEDGIKPNLVMCRC 794
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 58.1 bits (142), Expect = 2e-11
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 221 VKPDVVTFNILISGFCRNKKFDLALGLFREMR 252
+KPDVVT+N LI G CR + D A+ L EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 3e-10
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 226 VTFNILISGFCRNKKFDLALGLFREMREKGCNPNV 260
VT+N LI G C+ + + AL LF+EM+E+G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 5e-10
Identities = 56/234 (23%), Positives = 108/234 (46%), Gaps = 10/234 (4%)
Query: 158 HFAVNAFVK----ANRMNDGLLAFEAMRKL-IDGRPSVSIYNVLINGFVKCREFDKALGF 212
H V A +K A +++ ++ + + I G P V Y + +N + ++D AL
Sbjct: 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV--YTIAVNSCSQKGDWDFALSI 636
Query: 213 YDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272
YD M + VKPD V F+ L+ D A + ++ R++G VS+++L+
Sbjct: 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696
Query: 273 ERKFDEGVNMAYEMIELGCEFSSV-TCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDF 331
+ + + + + YE I+ +V T L+ LC ++ KA E++ + R G+ P
Sbjct: 697 AKNWKKALEL-YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755
Query: 332 DYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIE-GLRRLRKGVEA 384
Y L+ + +A + L+++ + + G P+++ C + LRR K
Sbjct: 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 363 PSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD 412
P V+ TLI+G + K EA L +M K GI P+ T++ L++ LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 258 PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307
P+VV++NTLI G+ + K +E + + EM + G + + T IL+DGLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-09
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 226 VTFNILISGFCRNKKFDLALGLFREMREKGC 256
VT+N LISG+C+ K + AL LF+EM+EKG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 8e-08
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 29/183 (15%)
Query: 95 IFAWASTIDSFRHDHTTF--LFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPE 152
+ +W S I R ++ F L R + + + +SV I+A C+ G C +
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLT---LKPNSV-TLIAA-LSACARIGALMCGK 509
Query: 153 MERIFH----------FAVNA----FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLIN 198
E H F NA +V+ RMN F + K V +N+L+
Sbjct: 510 -EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK------DVVSWNILLT 562
Query: 199 GFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK-GCN 257
G+V + A+ ++RMV V PD VTF L+ R+ L F M EK
Sbjct: 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622
Query: 258 PNV 260
PN+
Sbjct: 623 PNL 625
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 433 PDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482
PD +TY+ L+ GY ++ + +E L NEM G P++ TY+ +DGL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 56/263 (21%), Positives = 98/263 (37%), Gaps = 52/263 (19%)
Query: 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG 255
LI+ + KC + + A +D M V +N +++G+ + + AL L+ EMR+ G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315
+ + +F+ +IR F + +I G V LVD GR+ A
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA- 379
Query: 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375
V D + +K ++I+ LI G
Sbjct: 380 ----------------------------------RNVFDRMPRK----NLISWNALIAGY 401
Query: 376 RRLRKGVEASGLMEKMLKEGILPDSVTF-----NCLLEDLCDVGRTVDADRLRLLASTKG 430
+G +A + E+M+ EG+ P+ VTF C L + G + + ++
Sbjct: 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI----FQSMSENHR 457
Query: 431 LDPDGMTYHILVSGYTRENRRKE 453
+ P M Y ++ RE E
Sbjct: 458 IKPRAMHYACMIELLGREGLLDE 480
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 82/358 (22%), Positives = 135/358 (37%), Gaps = 66/358 (18%)
Query: 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKP 223
++ + F M + + +VS + +I+G+ K DKAL Y M +D V P
Sbjct: 333 YLSLGSWGEAEKVFSRM----ETKDAVS-WTAMISGYEKNGLPDKALETYALMEQDNVSP 387
Query: 224 D-----------------------------------VVTFNILISGFCRNKKFDLALGLF 248
D VV N LI + + K D AL +F
Sbjct: 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447
Query: 249 REMREKGCNPNVVSFNTLIRGF-FGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307
+ EK +V+S+ ++I G R F E + +M+ L + +SVT +
Sbjct: 448 HNIPEK----DVISWTSIIAGLRLNNRCF-EALIFFRQML-LTLKPNSVTLIAALSACAR 501
Query: 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNL--PSV 365
G ++ E+ R G+ F L++ G A W + N V
Sbjct: 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA-------WNQFNSHEKDV 554
Query: 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRT-VDADRLRL 424
++ L+ G KG A L +M++ G+ PD VTF L LC R+ + L
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL---LCACSRSGMVTQGLEY 611
Query: 425 LASTK---GLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDG 479
S + + P+ Y +V R + E N +N+M PD A + + ++
Sbjct: 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 5e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV 225
YN LI+G K ++AL + M ++PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 398 PDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGY 445
PD VT+N L++ C G+ +A +L +G+ P+ TY IL+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 69/287 (24%)
Query: 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF------------------------ 228
+NVL+ G+ K FD+AL Y RM+ V+PDV TF
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 229 -----------NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFD 277
N LI+ + + A +F M + C +S+N +I G+F +
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECL 270
Query: 278 EGVNMAYEMIELGCE-----FSSVT--CEILVD-GLCNE--GRVLKACELVIDFSRRGVL 327
EG+ + + M EL + +SV CE+L D L E G V+K +D S L
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSL 329
Query: 328 PKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRR---LRKGVEA 384
+ + G G A +++ + ++ T +I G + K +E
Sbjct: 330 IQMYLSLGSW------GEAE-------KVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 385 SGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL 431
LME ++ + PD +T +L +G +L LA KGL
Sbjct: 377 YALME---QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 61/299 (20%), Positives = 110/299 (36%), Gaps = 39/299 (13%)
Query: 223 PDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNM 282
P + TFN+L+S ++ D AL + R ++E G + + TLI K D +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 283 AYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC-------------------ELVIDFSR 323
+EM+ G E + T L+DG G+V KA L+ +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 324 RGVLPKDFD------------------YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSV 365
G + + FD L++ G A EV + + N+
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI-HEYNIKGT 613
Query: 366 IACTTLIEGLRRLRKGVE-ASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRL 424
T+ + + A + + M K+G+ PD V F+ L++ G A +
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 425 LASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNA 483
A +G+ ++Y L+ + K+ L ++ P ++T N+ + L
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 225 VVTFNILISGFCRNKKFDLALGLFREMREKGCNP 258
+ T+N L+ + DLAL + EM+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRV 221
YN LI+G+ K + ++AL + M V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 436 MTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD 469
+TY+ L+ G + R +E L EM + G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 4e-04
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 254 KGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM 286
KG P+VV++NTLI G + DE V + EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKP 223
+ YN L+ K + D AL + M +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 429 KGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461
KGL PD +TY+ L+ G R R E L++EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 261 VSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS 295
V++NTLI G + +E + + EM E G E
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 491 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.63 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.43 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.25 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.11 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.08 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.05 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.02 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.0 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.86 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.86 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.84 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.84 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.77 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.77 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.69 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.69 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.67 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.63 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.52 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.51 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.46 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.42 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.39 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.39 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.36 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.34 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.29 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.26 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.22 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.21 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.19 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.12 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.03 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.02 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.01 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.0 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.97 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.96 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.94 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.88 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.84 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.82 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.81 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.81 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.75 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.68 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.67 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.66 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.6 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.6 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.58 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.54 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.51 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.49 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.48 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.48 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.47 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.43 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.34 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.34 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.3 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.27 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.24 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.2 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.19 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.17 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.16 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.14 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.07 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.06 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.05 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.05 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.05 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.01 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.01 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.0 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.98 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.96 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.9 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.89 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.89 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.88 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.87 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.83 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.82 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.82 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.79 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.77 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.75 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.71 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.53 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.49 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.41 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.39 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.3 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.26 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.21 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.14 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.03 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.92 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.89 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.87 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.65 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.57 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.55 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.52 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.45 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.4 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.37 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.36 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.18 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.11 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.08 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.05 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.9 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.89 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.78 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.67 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.65 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.59 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.58 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.47 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.32 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.32 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.32 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.27 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.25 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.03 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.92 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.91 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.59 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.54 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.4 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.23 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.21 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.18 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.18 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.06 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.66 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.53 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.47 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.46 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.36 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.32 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.23 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.19 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.17 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.9 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.89 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.77 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.62 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.44 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.16 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.69 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.69 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.58 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.11 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 89.97 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.6 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.53 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.27 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.22 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.89 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.8 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.74 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.77 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.49 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.37 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.35 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 87.08 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.03 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 87.03 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.88 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.77 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.46 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 86.45 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.11 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 85.58 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.43 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.43 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 85.4 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.76 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.52 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.47 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.44 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.31 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.09 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.74 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.73 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.95 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 82.78 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.87 | |
| PF14669 | 233 | Asp_Glu_race_2: Putative aspartate racemase | 81.87 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.75 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.43 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.38 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.72 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.52 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.46 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.21 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.04 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=495.04 Aligned_cols=387 Identities=18% Similarity=0.226 Sum_probs=301.4
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+++|++|....-+.++..+++.++..|.+.|.+++|..+++.|.. .+..+|+.++.+|++.|
T Consensus 386 l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--------------pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 386 IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--------------PTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--------------CCHHHHHHHHHHHHhCc
Confidence 3558888888887655666777777777777777777777777777643 11467777777777778
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLF 248 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 248 (491)
++++|.++|++|.+. |..||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|
T Consensus 452 ~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 452 DIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 888888887777775 6677777788888888888888888888888777777777778888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011201 249 REMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIE--LGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV 326 (491)
Q Consensus 249 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 326 (491)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 8877777777777888888888877888888888877765 46777777788888878888888888888877777777
Q ss_pred CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 327 LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCL 406 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 406 (491)
.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 77777788888888888888888888888777777777777888888887777777888888877777777777788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 011201 407 LEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKS 486 (491)
Q Consensus 407 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 486 (491)
|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888888888887777777777777777778888888888888888888888777777777888888887888777777
Q ss_pred cccc
Q 011201 487 VRQT 490 (491)
Q Consensus 487 ~~A~ 490 (491)
++|.
T Consensus 771 e~A~ 774 (1060)
T PLN03218 771 DVGL 774 (1060)
T ss_pred HHHH
Confidence 7764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-60 Score=487.40 Aligned_cols=377 Identities=20% Similarity=0.304 Sum_probs=363.6
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+.+|..+.. |+..+|+.++.+|++.|+++.|..+|+.|.+.|..++ ..+|+.+|.+|++.|
T Consensus 422 ~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD----------~~tynsLI~~y~k~G 486 (1060)
T PLN03218 422 VKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD----------CKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHhCc
Confidence 3457888887754 8999999999999999999999999999999886544 689999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLF 248 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 248 (491)
++++|.++|++|.+. |..||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|
T Consensus 487 ~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 487 KVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999986 7789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH--cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011201 249 REMRE--KGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV 326 (491)
Q Consensus 249 ~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 326 (491)
++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 99986 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 327 LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCL 406 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 406 (491)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 407 LEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLS 481 (491)
Q Consensus 407 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 481 (491)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|++++..|.
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=479.69 Aligned_cols=376 Identities=18% Similarity=0.253 Sum_probs=345.0
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+.+|.|+....++.|+..+|+.++.+|++.++++.+.+++..|.+.|..++ ..+++.++.+|++.|
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~----------~~~~n~Li~~y~k~g 172 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD----------QYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc----------hHHHHHHHHHHhcCC
Confidence 3568999999987777889999999999999999999999999999998876533 577888888888888
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-------------------------
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKP------------------------- 223 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p------------------------- 223 (491)
++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 173 ~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 173 MLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 88888888888863 788888888888888888888888888887666555
Q ss_pred ----------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 011201 224 ----------DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF 293 (491)
Q Consensus 224 ----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 293 (491)
|..+||.||++|++.|++++|.++|++|.+ +|.++|+.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 455667888999999999999999999975 499999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 294 SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIE 373 (491)
Q Consensus 294 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 373 (491)
|..||+.++.+|++.|++++|.+++..|.+.|+.+|..+|+.||++|+++|++++|.++|++|.+ +|..+||+||.
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~ 399 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIA 399 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999964 58999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHH
Q 011201 374 GLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST-KGLDPDGMTYHILVSGYTRENRRK 452 (491)
Q Consensus 374 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~ 452 (491)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++|++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999976 699999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 453 EGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 453 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
+|.+++++| ++.|+..+|++|+.+|...|+++.|.
T Consensus 480 eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 480 EAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999999887 78999999999999999999998774
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-55 Score=444.68 Aligned_cols=374 Identities=16% Similarity=0.244 Sum_probs=344.3
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..+..++..+.. .++.||..+|+.++..|++.|+++.|..+|++|...+ ..+|+.++.+|++.|+
T Consensus 140 ~~a~~l~~~m~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~--------------~~t~n~li~~~~~~g~ 204 (697)
T PLN03081 140 RCVKAVYWHVES-SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN--------------LASWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHHHH-hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCC--------------eeeHHHHHHHHHHCcC
Confidence 346777777766 5788999999999999999999999999999986422 3579999999999999
Q ss_pred hhHHHHHHHHHHHhc----------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 170 MNDGLLAFEAMRKLI----------------------------------DGRPSVSIYNVLINGFVKCREFDKALGFYDR 215 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~----------------------------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 215 (491)
+++|+++|++|.+.+ |..+|..+||+||++|+++|++++|.++|++
T Consensus 205 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999997541 2345666778999999999999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh
Q 011201 216 MVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS 295 (491)
Q Consensus 216 m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 295 (491)
|.. +|..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|.
T Consensus 285 m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 285 MPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred CCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 964 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 296 VTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 375 (491)
.+|+.++.+|++.|++++|.++|++|.+ +|..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999965 588899999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011201 376 RRLRKGVEASGLMEKMLK-EGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEG 454 (491)
Q Consensus 376 ~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 454 (491)
++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++.| ++.|+..+|++|+.+|+..|+++.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999987 499999999999999999999999999998754 6789999999999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcccccC
Q 011201 455 ENLVNEMLDEGFIPD-LATYNSYMDGLSNARKSVRQTR 491 (491)
Q Consensus 455 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~r 491 (491)
.++++++. ++.|+ ..+|..+++.|++.|++++|.+
T Consensus 514 ~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 514 RLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999997 56675 6799999999999999999863
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=453.34 Aligned_cols=386 Identities=20% Similarity=0.229 Sum_probs=243.8
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCc----------------------
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGI---------------------- 147 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------------------- 147 (491)
..|.++|..+.. +|..+|+.+|.+|++.|++++|..+|++|...|..++....
T Consensus 138 ~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 138 VHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred HHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 346777777753 57788999999999999999999999999887765542100
Q ss_pred ---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 011201 148 ---FSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD 224 (491)
Q Consensus 148 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 224 (491)
.....+..+++.++.+|++.|++++|.++|++|.+ +|..+||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 00011234556666666666666666666666642 4556666666666666666666666666666555555
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------------------------------CHHHHHHHHHHHHcC
Q 011201 225 VVTFNILISGFCRNKKFDLALGLFREMREKGCNP-------------------------------NVVSFNTLIRGFFGE 273 (491)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-------------------------------~~~~~~~li~~~~~~ 273 (491)
..||+.++.+|++.|+++.|.+++..|.+.|+.| |.++|+.+|.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 5555555555555555555555555554444444 445555555555556
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVV 353 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 353 (491)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.||++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666667777777777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---------------------------------
Q 011201 354 DELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDS--------------------------------- 400 (491)
Q Consensus 354 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--------------------------------- 400 (491)
++|.+. |..+||.+|.+|++.|+.++|+++|++|.+ ++.||.
T Consensus 448 ~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 776442 445555555555555555555555555543 244443
Q ss_pred --------------------------------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011201 401 --------------------------------VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRE 448 (491)
Q Consensus 401 --------------------------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 448 (491)
.+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 345555555666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 449 NRRKEGENLVNEML-DEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 449 g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
|++++|.++|++|. +.|+.|+..+|++++.+|+++|++++|.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 66666666666666 4566666666666666666666666664
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=446.01 Aligned_cols=372 Identities=16% Similarity=0.171 Sum_probs=336.5
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCCh
Q 011201 91 YDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRM 170 (491)
Q Consensus 91 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (491)
.+..++..+.. .+..++...++.++..|++.|+++.|+.+|++|.... ..+|+.++.+|++.|++
T Consensus 104 ~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d--------------~~~~n~li~~~~~~g~~ 168 (857)
T PLN03077 104 EGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD--------------LFSWNVLVGGYAKAGYF 168 (857)
T ss_pred HHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCC--------------eeEHHHHHHHHHhCCCH
Confidence 35555655544 3445667777888888888888888888887775422 35788899999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011201 171 NDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFRE 250 (491)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 250 (491)
++|+++|++|... |..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||.||.+|++.|++++|.++|++
T Consensus 169 ~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 169 DEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 9999999998876 778999999999999988888999999999998889999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011201 251 MREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKD 330 (491)
Q Consensus 251 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 330 (491)
|.+ ||.++|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||.
T Consensus 248 m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 248 MPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred CCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 975 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 331 FDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDL 410 (491)
Q Consensus 331 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 410 (491)
.+|+.++.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 9999999999999999999999999864 588999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 411 CDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++.|++++|.++++.+.+.|+.|+..+|+.||++|++.|++++|.++|++|. .+|..+|++++.+|++.|+.++|.
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999995 468899999999999999999885
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-23 Score=222.47 Aligned_cols=359 Identities=11% Similarity=0.036 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
..++..+...+.+.|++++|..+++++.... |.....+..++..+.+.|++++|+.+++.+.+.. +.
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~ 599 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-----------PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PD 599 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CC
Confidence 3444455555555555555555555544332 2223445556666777777777777777766532 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...|..+..+|.+.|++++|.+.|+.+.+... .+...+..+..++.+.|++++|.++|+++.+.... +..++..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 566777777777777777777777777765432 24556667777777777777777777777665322 5667777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI 348 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 348 (491)
.+...|++++|.++++.+.+.+. .+...+..+...+...|++++|.+.++.+.+.+.. ..++..+..++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHH
Confidence 77777777777777777776653 35666777777888888888888888887776533 3566777888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 349 ALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
|.+.++++.+.... +...++.+...|...|+.++|.++|+++.+.. ..+...+..+...+...|+ .+|..+++.+.+
T Consensus 755 A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 88888888776543 67788888888888888888888888888764 3467778888888888888 778888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 429 KGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 429 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
.. +-+...+..+...|.+.|++++|.++++++++.+.. +..++..+..++.+.|++++|.
T Consensus 832 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 832 LA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred hC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 53 335667778888999999999999999999987643 8899999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-22 Score=217.16 Aligned_cols=357 Identities=11% Similarity=0.058 Sum_probs=202.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 011201 107 HDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (491)
.+..++..+...+...|++++|...++++.... |.....+..+...+...|++++|.+.|+++.+..
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 529 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-----------PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-- 529 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 455567777777777777777777777766532 2223455556666666666666666666666542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
+.+..++..+...+.+.|+.++|..+++++.+.+. .+...+..++..+.+.|++++|.++++++.+.. ..+...|..+
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 607 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLML 607 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 34556666666666666666666666666655432 244455556666666666666666666665542 2245566666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNA 346 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 346 (491)
..++.+.|++++|...|+++.+... .+...+..+...+.+.|++++|..+++.+.+.... +...+..++..+...|++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCH
Confidence 6666666666666666666655432 24455555666666666666666666666554322 344555555556666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 347 GIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLA 426 (491)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 426 (491)
++|.++++.+.+.+.. +...+..+...+...|++++|.+.|+++.+. .|+..++..+..++.+.|+.++|.+.++.+
T Consensus 686 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666655554322 4445555555555556666666666555553 233344444555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 427 STKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARK 485 (491)
Q Consensus 427 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 485 (491)
.+.. +.+...+..+...|.+.|++++|.+.|+++.+.. ..+...+..+...+.+.|+
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 4432 2344555555555555555555555555555432 2234444444444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-23 Score=198.39 Aligned_cols=303 Identities=17% Similarity=0.141 Sum_probs=256.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHh
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD---VVTFNILISGFCR 237 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~ 237 (491)
...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.++++.+...+..++ ...+..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999863 45677899999999999999999999999987542222 2567888999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHH
Q 011201 238 NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS----VTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~ 313 (491)
.|++++|.++|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999987632 36788999999999999999999999999887644322 245567778889999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|.+.|+.++|.+.++++.+
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999876533 45677888999999999999999999999865443356788999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 011201 394 EGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR---ENRRKEGENLVNEMLDEGFIPDL 470 (491)
Q Consensus 394 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~ 470 (491)
. .|+...+..+...+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+.+++..++++|.+++++|+.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 5 567677788999999999999999999998876 5899999988888775 56999999999999998877766
Q ss_pred H
Q 011201 471 A 471 (491)
Q Consensus 471 ~ 471 (491)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-21 Score=185.69 Aligned_cols=304 Identities=13% Similarity=0.079 Sum_probs=253.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC--CHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP--SVSIY 193 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 193 (491)
...+...|++++|...|+++.... |.+..++..+...+...|++++|+.+++.+.......+ ....+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-----------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-----------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 445667799999999999998764 44467888999999999999999999999887522111 13568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNV----VSFNTLIRG 269 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~ 269 (491)
..+...|.+.|++++|.++|+++.+.. ..+..+++.++..+.+.|++++|.+.++++.+.+..++. ..+..+...
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 899999999999999999999998753 346788999999999999999999999999987544322 245667788
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIA 349 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 349 (491)
+.+.|++++|.++|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|++.|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999987653 246677888899999999999999999998765443356688899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHH
Q 011201 350 LEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD---VGRTVDADRLRLLA 426 (491)
Q Consensus 350 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~ 426 (491)
.+.++++.+.. |+...+..++..+.+.|++++|.++++++.+. .|+..++..++..++. .|+.+++..+++.+
T Consensus 269 ~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 269 LEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 99999998865 45566788999999999999999999999885 6899999988887775 45899999999999
Q ss_pred HHCCCCCCHH
Q 011201 427 STKGLDPDGM 436 (491)
Q Consensus 427 ~~~g~~p~~~ 436 (491)
.+.++.|+..
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 9887777665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-18 Score=176.33 Aligned_cols=332 Identities=11% Similarity=0.029 Sum_probs=273.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHH
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVS 191 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (491)
...++..+.+.|++++|..+++...... |....++..++.+....|++++|+..|+++.+.. +.+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~ 111 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-----------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPE 111 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-----------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChH
Confidence 4456778889999999999999988754 4445778888888889999999999999999863 45677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFF 271 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 271 (491)
.+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|...++.+...... +...+..+ ..+.
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~ 188 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFL 188 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHH
Confidence 889999999999999999999999987532 25678888999999999999999999988776443 33344333 3478
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH---
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI--- 348 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--- 348 (491)
+.|++++|...++.+.+.....+...+..+...+.+.|++++|+..++.+.+.... +...+..+...|...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHH
Confidence 89999999999999887654445555666678889999999999999999987644 56778889999999999986
Q ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 349 -ALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAS 427 (491)
Q Consensus 349 -a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 427 (491)
|...|++..+..+. +...+..+...+.+.|++++|+..+++..+.... +...+..+..++.+.|++++|...++.+.
T Consensus 268 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 268 QAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999887654 6788999999999999999999999999985322 45667778889999999999999999998
Q ss_pred HCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 428 TKGLDPDG-MTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 428 ~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
+.. |+. ..+..+..++...|+.++|.+.|++..+.
T Consensus 346 ~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 346 REK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 763 444 33444567889999999999999999865
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-17 Score=167.78 Aligned_cols=360 Identities=12% Similarity=-0.051 Sum_probs=276.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
.+......+.+.|++++|...|++.+... |. ...|..+..+|.+.|++++|++.+++..+.. +.+.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-----------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~ 194 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK-----------PD-PVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYS 194 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCH
Confidence 35567788889999999999999987653 22 3568888999999999999999999999863 4567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----------------------------CC-ChhhHHHHHH--------
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRV----------------------------KP-DVVTFNILIS-------- 233 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----------------------------~p-~~~~~~~li~-------- 233 (491)
.+|..+..+|...|++++|+..|......+. .| +...+..+..
T Consensus 195 ~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 195 KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCC
Confidence 8899999999999999999876654322110 00 1001110000
Q ss_pred ----------------------HH------HhcCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHcCCCHHHHHHHH
Q 011201 234 ----------------------GF------CRNKKFDLALGLFREMREKG-CNP-NVVSFNTLIRGFFGERKFDEGVNMA 283 (491)
Q Consensus 234 ----------------------~~------~~~~~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 283 (491)
.. ...+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00 11257889999999998764 223 4567888888899999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC
Q 011201 284 YEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP 363 (491)
Q Consensus 284 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 363 (491)
++..+.... ....|..+...+...|++++|...++...+.... +..++..+...+...|++++|...|++..+....
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~- 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD- 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-
Confidence 999876432 4567888888999999999999999999877543 5678888999999999999999999999887643
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------H
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGM------T 437 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~------~ 437 (491)
+...+..+...+.+.|++++|+..|++.++.. .-+...++.+...+...|++++|...++...+..-..+.. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 56778888889999999999999999998752 2347788889999999999999999999988753221111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccccc
Q 011201 438 YHILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 438 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++..+..+...|++++|.+++++.+... |+ ...+..+...+.+.|++++|.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHH
Confidence 2222233445699999999999988654 44 457888999999999999985
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-19 Score=163.38 Aligned_cols=357 Identities=15% Similarity=0.089 Sum_probs=275.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
-.++|..+...+-..|++++|+.+++.+++.. |.....|-.+..++...|+.+.|...|.+..+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-----------p~fida~inla~al~~~~~~~~a~~~~~~alqln--- 180 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-----------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--- 180 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-----------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---
Confidence 45688889999999999999999999998764 5667889999999999999999999999988863
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHH
Q 011201 188 PSVSI-YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPN-VVSFNT 265 (491)
Q Consensus 188 ~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ 265 (491)
|+... .+.+...+-..|++++|...|.+..+.... =...|+.|...+-..|+...|++-|++..+. .|+ ...|-.
T Consensus 181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiN 257 (966)
T KOG4626|consen 181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYIN 257 (966)
T ss_pred cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhh
Confidence 65443 334445555678899998888887765321 2457888888888889999999999888875 343 567888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCC
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGN 345 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 345 (491)
|...|...+.+++|...|.+....... ..+++..+...|...|+++.|+..+++.++.... -...|+.|..++-..|+
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccc
Confidence 888888888888888888887765322 4566777777888888888888888888776543 24468888888888888
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRL 424 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 424 (491)
+.+|...+++....... .....+.|...|...|.+++|..+|....+ +.|. ....+.|...|-++|++++|..-++
T Consensus 336 V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred hHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 88888888888776543 466777788888888888888888888777 4444 4567778888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccccc
Q 011201 425 LASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL-ATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 425 ~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~ 490 (491)
+.... +|+ ...|+.+...|-..|+.++|.+.+.+.+. +.|.. ..++.|...|..+|++.+|.
T Consensus 413 ealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 413 EALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 87763 555 46778888888888888888888888773 45554 46677778888888877764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-17 Score=165.39 Aligned_cols=357 Identities=11% Similarity=-0.029 Sum_probs=276.0
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+..|..+... .|+...|..+..++.+.|++++|+..++..+... |....++..+..+|...|
T Consensus 143 ~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-----------p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 143 FNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-----------PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----------CCCHHHHHHHHHHHHHcC
Confidence 34588889887763 5677889999999999999999999999988754 555688999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCC----------------------------CCHHHHHHH------------------------
Q 011201 169 RMNDGLLAFEAMRKLIDGR----------------------------PSVSIYNVL------------------------ 196 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~----------------------------~~~~~~~~l------------------------ 196 (491)
++++|+..|..+....+.. .+...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 9999987665543221110 000000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHHHhhCC-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 011201 197 ------INGF------VKCREFDKALGFYDRMVRDR-VKP-DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVS 262 (491)
Q Consensus 197 ------i~~~------~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 262 (491)
+..+ ...+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++..+.... +...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHH
Confidence 0000 11257889999999988764 223 4567888888999999999999999999876322 4668
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCG 342 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 342 (491)
|..+...+...|++++|+..|+++.+... -+..++..+...+...|++++|...|+...+.... +...+..+...+.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHH
Confidence 88999999999999999999999988753 36788889999999999999999999999887643 56678888999999
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCh
Q 011201 343 EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDS------VTFNCLLEDLCDVGRT 416 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~ 416 (491)
.|++++|+..|++..+.... +...|+.+...+...|++++|++.|++..+.....+. ..++..+..+...|++
T Consensus 446 ~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 99999999999999876433 6788999999999999999999999998875221111 1122222234446999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 417 VDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 417 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
++|..++++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 525 ~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 525 IEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999988764 234567888999999999999999999998755
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-17 Score=168.71 Aligned_cols=322 Identities=11% Similarity=0.022 Sum_probs=264.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
...++..+.+.|++++|+.+++.+.... +-+...+..++.++...|++++|.+.|+++...... +...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 3456777889999999999999998853 445667777778888899999999999999886433 5677888899999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
+.|++++|.+.++++.+.... +...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHH
Confidence 999999999999999886332 57788899999999999999999999887765433 3333333 34788999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHH
Q 011201 317 LVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVE----ASGLMEKML 392 (491)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~ 392 (491)
.++.+.+.....+...+..+...+.+.|++++|.+.+++..+.... +...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999887754445555566678899999999999999999987644 67888889999999999986 899999998
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011201 393 KEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA 471 (491)
Q Consensus 393 ~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 471 (491)
+. .| +...+..+...+...|++++|...++...+.. +.+...+..+..+|.+.|++++|.+.++++.+. .|+..
T Consensus 278 ~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 278 QF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 85 34 56788889999999999999999999998864 335667788899999999999999999999865 46654
Q ss_pred H-HHHHHHHHHhcCCccccc
Q 011201 472 T-YNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 472 ~-~~~ll~~~~~~g~~~~A~ 490 (491)
. +..+..++...|+.++|.
T Consensus 353 ~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHH
Confidence 4 344567899999999885
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-17 Score=174.42 Aligned_cols=358 Identities=12% Similarity=0.039 Sum_probs=250.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHH-
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYN- 194 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 194 (491)
...+...|++++|...|++.++.. |.+..++..+..++.+.|++++|+..|++..+.....+....|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-----------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-----------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 456677899999999999988754 44568889999999999999999999999987642222222222
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 011201 195 -----------VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 195 -----------~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
.+...+.+.|++++|.+.|++..+... .+...+..+...+...|++++|++.|++..+.... +...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 224567788999999999999988643 25667788889999999999999999998875322 23333
Q ss_pred HHH------------------------------------------HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011201 264 NTL------------------------------------------IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEIL 301 (491)
Q Consensus 264 ~~l------------------------------------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 301 (491)
..+ ...+...|++++|++.|++..+.... +...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 322 23344678888888888888776533 55666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----------------------
Q 011201 302 VDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK---------------------- 359 (491)
Q Consensus 302 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------- 359 (491)
...|.+.|++++|...++.+.+.... +...+..+...+...|+.++|...++.+...
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 88888888888888888887765432 2222222222333344444444443322110
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 360 -----------------GNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 360 -----------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
....+...+..+...+.+.|+.++|++.|++..+.. .-+...+..+...+...|+.++|.+.
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 012244556667777888888899999888888753 22567788888888888999999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCccccc
Q 011201 423 RLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGF--IP---DLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 423 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++.+.+.. +.+...+..+..++...|++++|.+++++++...- .| +...+..+...+...|+.++|+
T Consensus 660 l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 660 LAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred HHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 88777642 23456667777888888999999999998876421 12 2245666677888888888775
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-17 Score=151.96 Aligned_cols=362 Identities=14% Similarity=0.091 Sum_probs=300.0
Q ss_pred hhHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 90 HYDFHIFAWASTIDSFRH-DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
..|+.+++.+.+. +| ....|..+..++...|+.+.|...|.+.++.. |....+...+...+-..|
T Consensus 133 ~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqln-----------P~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 133 QDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-----------PDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-----------cchhhhhcchhHHHHhhc
Confidence 3478888887764 34 45689999999999999999999999887764 444445556677777899
Q ss_pred ChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHH
Q 011201 169 RMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~ 246 (491)
++++|...+.+..+. .|. ..+|+.|...+-.+|+...|++.|++.... .|+ ...|-.|...|...+.+++|+.
T Consensus 199 rl~ea~~cYlkAi~~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 199 RLEEAKACYLKAIET---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred ccchhHHHHHHHHhh---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 999999998888765 344 567999999999999999999999998765 344 4578889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011201 247 LFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV 326 (491)
Q Consensus 247 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 326 (491)
.|.+....... ..+.+..+...|...|.+|.|+..|++.++.... -...|+.|..++-..|++.+|.+.+...+....
T Consensus 274 ~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 274 CYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 99988765322 4678889999999999999999999999987543 357899999999999999999999999988754
Q ss_pred CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 011201 327 LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD-SVTFNC 405 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ 405 (491)
. -....+.|...|...|.+++|..+|....+-... -...+|.|...|-++|+.++|+.-|++.++ ++|+ ...|+.
T Consensus 352 ~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N 427 (966)
T KOG4626|consen 352 N-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN 427 (966)
T ss_pred c-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence 4 3456788999999999999999999998875432 356788899999999999999999999988 6787 568899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 011201 406 LLEDLCDVGRTVDADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA-TYNSYMDGL 480 (491)
Q Consensus 406 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~ 480 (491)
+...|-..|+.+.|.+.+.+.+.. .|. .+..+.|...|-..|++.+|+.-|++.+ .++||.. .|-.++.++
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCL 500 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHH
Confidence 999999999999999999988875 344 5778899999999999999999999998 5677753 444444444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-15 Score=157.81 Aligned_cols=399 Identities=9% Similarity=-0.001 Sum_probs=271.9
Q ss_pred CCCCChHHHHHHHHhhhcCCCCchhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCC
Q 011201 66 NNQITPSSLLHFLKSKLHHHPQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSND 145 (491)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (491)
...++|..+...+.. .. ..+-...|+.++...... -..+...+..+...+.+.|++++|..++++.+...
T Consensus 10 ~~~~~~~~~~d~~~i-a~-~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~------ 79 (765)
T PRK10049 10 KSALSNNQIADWLQI-AL-WAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE------ 79 (765)
T ss_pred ccCCCHHHHHHHHHH-HH-HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 446677777766652 21 222234467777766542 13455578899999999999999999999987653
Q ss_pred CcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh
Q 011201 146 GIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV 225 (491)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 225 (491)
|.....+..++.++.+.|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.... +.
T Consensus 80 -----P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~ 150 (765)
T PRK10049 80 -----PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQ 150 (765)
T ss_pred -----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 4445677788899999999999999999998863 44566 888899999999999999999999887433 55
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----cCCCH---HHHHHHHHHHHHc-C
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREKGCNPNV------VSFNTLIRGFF-----GERKF---DEGVNMAYEMIEL-G 290 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-~ 290 (491)
..+..+...+.+.++.++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. .
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 5666778888888999999988876553 1221 11122222222 22234 6677777777754 2
Q ss_pred CCCChh-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-
Q 011201 291 CEFSSV-TCE----ILVDGLCNEGRVLKACELVIDFSRRGVL-PKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP- 363 (491)
Q Consensus 291 ~~~~~~-~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~- 363 (491)
..|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.......
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 222221 111 1133445668888888888888776532 322 22335667888888888888888877643221
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 364 --SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI-----------LPD---SVTFNCLLEDLCDVGRTVDADRLRLLAS 427 (491)
Q Consensus 364 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 427 (491)
....+..+..++...|++++|.++++++.+... .|+ ...+..+...+...|++++|+.+++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 134455666677888888888888888876421 123 1234556667778888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccccc
Q 011201 428 TKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 428 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~ 490 (491)
... +-+...+..+...+...|++++|++.+++.++. .|+ ...+......+.+.|++++|+
T Consensus 387 ~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 387 YNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHH
Confidence 753 445777788888888888888888888888854 455 456666667778888888775
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-15 Score=165.10 Aligned_cols=364 Identities=12% Similarity=0.003 Sum_probs=260.3
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcc-cCCchHH--HHHHHHHHHHH
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIF-SCPEMER--IFHFAVNAFVK 166 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~ 166 (491)
..|...|+.+.... +.+..++..+...+.+.|++++|...|++..+........... ..-.... ........+.+
T Consensus 286 ~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 286 GKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34777888776642 2367789999999999999999999999988754321100000 0000000 11223456778
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH----------------
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI---------------- 230 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~---------------- 230 (491)
.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..
T Consensus 364 ~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999998863 456777888889999999999999999998765322 2222222
Q ss_pred --------------------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011201 231 --------------------------LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAY 284 (491)
Q Consensus 231 --------------------------li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 284 (491)
+...+...|++++|++.|++..+.... +...+..+...|.+.|++++|...++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 223455679999999999999887543 56778889999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------------------------C
Q 011201 285 EMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR---------------------------------------G 325 (491)
Q Consensus 285 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------------------------~ 325 (491)
++.+.... +...+..+...+...++.++|...++.+... .
T Consensus 520 ~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 520 RLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 98875432 3333322222333444444444443322110 1
Q ss_pred CCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHH
Q 011201 326 VLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP-DSVTFN 404 (491)
Q Consensus 326 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~ 404 (491)
.+.+...+..+...+.+.|+.++|++.|++..+..+. +...+..++..|...|++++|++.++...+. .| +...+.
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~ 675 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQR 675 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHH
Confidence 1234456677888999999999999999999987654 7888999999999999999999999988764 33 455667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 405 CLLEDLCDVGRTVDADRLRLLASTKGLD--P---DGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 405 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~--p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.+..++...|++++|.++++.+...... + +...+..+...+...|++++|++.|++...
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778888999999999999998875321 1 234666678889999999999999999864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-14 Score=149.26 Aligned_cols=367 Identities=11% Similarity=0.038 Sum_probs=271.4
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..|..+++.+.... +.+...+..+...+...|++++|...++++.... |.... +..+..++...|+
T Consensus 66 ~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-----------P~~~~-~~~la~~l~~~g~ 131 (765)
T PRK10049 66 QNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-----------PDKAN-LLALAYVYKRAGR 131 (765)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------CCCHH-HHHHHHHHHHCCC
Confidence 45788888876642 3456677788899999999999999999998753 44456 8888999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh------hhHHHHHHHHH-----hc
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV------VTFNILISGFC-----RN 238 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~-----~~ 238 (491)
.++|+..++++.+.. +.+...+..+...+...+..++|++.++.... .|+. .....++.... ..
T Consensus 132 ~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 132 HWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 999999999999863 44677777788889899999999999987654 2221 01122222222 22
Q ss_pred CCh---hHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhc
Q 011201 239 KKF---DLALGLFREMREK-GCNPNVV-SF----NTLIRGFFGERKFDEGVNMAYEMIELGCE-FSSVTCEILVDGLCNE 308 (491)
Q Consensus 239 ~~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~ 308 (491)
+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.. |+. ....+...|...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhc
Confidence 334 7788899988864 2223221 11 11134556779999999999999987632 322 223357789999
Q ss_pred CCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-----------CCC---HHHHHHH
Q 011201 309 GRVLKACELVIDFSRRGVLP---KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGN-----------LPS---VIACTTL 371 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~l 371 (491)
|++++|+.+|+.+.+..... .......+..++.+.|++++|.+.++.+..... .|+ ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 99999999999988654321 123466677788999999999999999987632 122 2345667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRR 451 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 451 (491)
...+...|+.++|+++++++.... .-+...+..+...+...|+.++|++.++.+.+.. +-+...+..++..+.+.|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCH
Confidence 778899999999999999998862 3357788888889999999999999999998863 33466777777889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 452 KEGENLVNEMLDEGFIPDLATYNSYMDGL 480 (491)
Q Consensus 452 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 480 (491)
++|..+++++++. .|+......+-..+
T Consensus 444 ~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 444 RQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999964 56666555554444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.3e-14 Score=141.44 Aligned_cols=378 Identities=11% Similarity=-0.007 Sum_probs=278.3
Q ss_pred hhHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHc
Q 011201 90 HYDFHIFAWASTIDSFRHDH--TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKA 167 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (491)
..|+..|..+... .|+. ..+ .++..+...|+.++|+..+++..... +.....+..+...+...
T Consensus 51 ~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-----------n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 51 APVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-----------NISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-----------CCCHHHHHHHHHHHHHc
Confidence 3588888888764 2332 233 77888888899999999999887211 11223444457788899
Q ss_pred CChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 011201 168 NRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL 247 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 247 (491)
|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.
T Consensus 116 gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999864 445677778889999999999999999998776 45555565555555556677679999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH----------------------------------------------
Q 011201 248 FREMREKGCNPNVVSFNTLIRGFFGERKFDEGVN---------------------------------------------- 281 (491)
Q Consensus 248 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~---------------------------------------------- 281 (491)
++++.+.... +...+..++.++.+.|-...|++
T Consensus 192 ~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 9999887433 55566666666655554433333
Q ss_pred --HHHHHHHc-CCCCCh-h----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHH
Q 011201 282 --MAYEMIEL-GCEFSS-V----TCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVV 353 (491)
Q Consensus 282 --~~~~m~~~-~~~~~~-~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 353 (491)
-++.+... +..|.. . ...-.+-++...|++.++++.++.+...+......+-.++.++|...++.++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 23333221 111221 1 112345577788999999999999998887666678899999999999999999999
Q ss_pred HHHHHcC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHhcC
Q 011201 354 DELWKKG-----NLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI-----------LP--DS-VTFNCLLEDLCDVG 414 (491)
Q Consensus 354 ~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p--~~-~~~~~ll~~~~~~g 414 (491)
+++.... ..++......|..+|...+++++|..+++++.+... .| |- ..+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9987643 123444567899999999999999999999988311 12 22 23445566788899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccccc
Q 011201 415 RTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 415 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++.+|++.++.+.... +-|......+.+.+...|.+.+|.+.++..... .|+ ..+......++...|++++|.
T Consensus 431 dl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 431 DLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999998764 558899999999999999999999999887744 454 567778888889999999874
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-13 Score=120.57 Aligned_cols=309 Identities=15% Similarity=0.194 Sum_probs=231.8
Q ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 150 CPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
-|.+.+++.++|.++++--..+.|.+++++.... ..+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHH
Confidence 3667789999999999999999999999998776 4478999999999764432 2278999999999999999999
Q ss_pred HHHHHHHhcCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHc--C--CC---C-Chh
Q 011201 230 ILISGFCRNKKFDL----ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDE-GVNMAYEMIEL--G--CE---F-SSV 296 (491)
Q Consensus 230 ~li~~~~~~~~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~--~--~~---~-~~~ 296 (491)
+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... | +. | |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998764 67788899999999999999999999999888754 44444444321 2 22 2 445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 011201 297 TCEILVDGLCNEGRVLKACELVIDFSRRG----VLPK---DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACT 369 (491)
Q Consensus 297 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (491)
.|...+..|.+..+.+.|.++..-+.... +.++ .+-|..+....|+....+.-...|+.|.-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 66778888989999999998887665331 2222 2345677788888889999999999998777778888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--------HHH-----HHHH-------HHHHH
Q 011201 370 TLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVG-RT--------VDA-----DRLR-------LLAST 428 (491)
Q Consensus 370 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~--------~~a-----~~~~-------~~~~~ 428 (491)
.++++..-.|+++-.-+++..++..|..-+...-.-++..+|+.. .. ..+ ..++ .++.+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 899998889999988899988888776555555555555555543 11 111 1111 11222
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011201 429 KGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 429 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 465 (491)
.+......+.+.-.+.+.|+.++|.+++..+.+++
T Consensus 518 --~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 518 --QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred --ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 23445667777788889999999999999886654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-12 Score=132.46 Aligned_cols=359 Identities=12% Similarity=0.029 Sum_probs=260.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHH
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIY 193 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 193 (491)
.-+-...+.|+++.|+..|++..+.. |........++..+...|+.++|+..+++... .........
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~-----------P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~l 105 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAG-----------PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGL 105 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC-----------ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHH
Confidence 33446678899999999999998764 22222233778888899999999999999883 112334444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
..+...|...|++++|+++|+++.+.... |...+..++..+.+.++.++|++.++++... .|+...+..++..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 44467889999999999999999987544 5667778889999999999999999999876 44555565555555556
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH----------------------------------
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI---------------------------------- 319 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~---------------------------------- 319 (491)
++..+|++.++++.+.... +...+..++.++.+.|-...|.++..
T Consensus 183 ~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 7776799999999987533 55666666666666665544443332
Q ss_pred --------------HHHhC-CCCCCH-----hhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011201 320 --------------DFSRR-GVLPKD-----FDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR 379 (491)
Q Consensus 320 --------------~~~~~-~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 379 (491)
.+... +..|.. ....-.+-++...|+..++++.|+.+...+......+--.+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 22221 111211 1122345667788999999999999998886645667788899999999
Q ss_pred ChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CC--CH-HHHHH
Q 011201 380 KGVEASGLMEKMLKEG-----ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL-----------DP--DG-MTYHI 440 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----------~p--~~-~~~~~ 440 (491)
+.++|+.+|+++.... ..++......|..++...+++++|..+++.+.+.-. .| |- ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 9999999999987652 122344457788899999999999999999887311 12 21 23444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++..+...|+..+|.+.++++.... .-|......+...+...|...+|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 5677888999999999999998653 347778888888888888888775
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-14 Score=125.06 Aligned_cols=345 Identities=16% Similarity=0.134 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHH-HHHHHHHHHhcCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDG-LLAFEAMRKLIDGRP 188 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~ 188 (491)
.+=+.+++. ..+|.+.++.-+++.|...+++.+ +.....+-.++..| ...++--| .+.|-.|...+ ..
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS-------~kvq~~L~~LV~~~-Ns~~~~~~E~~~Fv~~~~~~--E~ 185 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVS-------EKVQLELFRLVTYY-NSSNVPFAEWEEFVGMRNFG--ED 185 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhh-cCCCCcchhHHHHhhccccc--cc
Confidence 344555544 456889999999999999887644 11111222222222 22332222 23444454432 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+..+| +.|.+.+ -+|+... -+..+|.+||.++|+--..+.|.+++++-.....+.+..+||.+|.
T Consensus 186 S~~sW--------K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~ 250 (625)
T KOG4422|consen 186 STSSW--------KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIG 250 (625)
T ss_pred ccccc--------ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhh
Confidence 34444 3344333 2333222 2566778888888888778888888887777766777778887776
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK----ACELVIDFSRRGVLPKDFDYFGLVEKLCGEG 344 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 344 (491)
+-.-.. ..+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+-|+.|...+|..+|..+++.+
T Consensus 251 ~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 251 ASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred HHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 543322 25677778777778888888888888888776654 4567777777788888888888887777776
Q ss_pred CHhH-HHHHHHHHHH----cCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC---HHHHHHHHH
Q 011201 345 NAGI-ALEVVDELWK----KGNLP----SVIACTTLIEGLRRLRKGVEASGLMEKMLKE----GILPD---SVTFNCLLE 408 (491)
Q Consensus 345 ~~~~-a~~~~~~m~~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~---~~~~~~ll~ 408 (491)
+..+ +..++.++.. +..+| |...|...+..|.+..+.+-|.++..-+... -+.|+ ..-|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 6543 4444444332 22222 3445566666677777777777665544432 12222 233556666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 484 (491)
..|.....+.-...++.|+-.-+-|+..+...++++..-.|+++-..++|..++..|..-+...-..++.-+++..
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 7777777777777787777766667777777777777778888888888888877775555555555555555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-12 Score=133.98 Aligned_cols=324 Identities=13% Similarity=0.067 Sum_probs=229.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH
Q 011201 123 YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL-IDGRPSVSIYNVLINGFV 201 (491)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~ 201 (491)
+...++...++.+.+.. |.+......+.-..++.|+.++|..+|+..... .+...+....+-|+..|.
T Consensus 356 ~~~~~~~~~~~~~y~~~-----------~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-----------PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred CchhHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 55666666666665542 333456666677778888899999988887762 222345555667788887
Q ss_pred hcCC---HHHHHHH----------------------HHHHhhC-CC-CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011201 202 KCRE---FDKALGF----------------------YDRMVRD-RV-KP--DVVTFNILISGFCRNKKFDLALGLFREMR 252 (491)
Q Consensus 202 ~~~~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 252 (491)
+.+. ..++..+ .+..... +. .+ +...|..+..++.. ++.++|+..+.+..
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 7766 3333222 1111111 11 22 55677777777776 78888999888877
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 253 EKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 253 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
.. .|+......+...+.+.|++++|...|+++... .++...+..+...+.+.|+.++|...++...+.+.. +...
T Consensus 504 ~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l 578 (987)
T PRK09782 504 QR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNAL 578 (987)
T ss_pred Hh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHH
Confidence 65 355544444455556899999999999987654 334445566677888899999999999988876532 2233
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP-DSVTFNCLLEDLC 411 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 411 (491)
+..+.......|++++|...+++..+.. |+...|..+...+.+.|+.++|+..+++..+. .| +...+..+..++.
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3334444556699999999999988765 46778888889999999999999999998885 34 4566777777889
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011201 412 DVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL 470 (491)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 470 (491)
..|+.++|...++...+.. +-+...+..+..++...|++++|...+++..+. .|+.
T Consensus 655 ~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 9999999999999888863 346778888999999999999999999999854 4543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-12 Score=124.59 Aligned_cols=362 Identities=12% Similarity=0.048 Sum_probs=275.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
........+.-.|++++|..++.++++.. |.....|..|...|-+.|+.+++...+-.+-... +.|.
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~ 207 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-----------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDY 207 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCh
Confidence 33444455555599999999999998865 4445789999999999999999998888777653 5577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH----HH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFN----TL 266 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~----~l 266 (491)
..|..+.....+.|.+++|.-.|.+.++.... +...+---+..|-+.|+...|.+.|.++.......|..-+. .+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999887533 44444455677889999999999999999874432333333 34
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------
Q 011201 267 IRGFFGERKFDEGVNMAYEMIEL-GCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLP----------------- 328 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------------- 328 (491)
+..+...++.+.|.+.++..... +-..+...+++++..|.+..+++.|......+......+
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 55677778889999998887762 234466788899999999999999998888776622211
Q ss_pred ----------CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 329 ----------KDFDYFGLVEKLCGEGNAGIALEVVDELWKKG--NLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 329 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
+..+ ..++-++...+..+....+.......+ +.-+...|.-+..+|...|++.+|+.+|..+.....
T Consensus 367 ~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 367 LCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred cccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 1112 123334444455555555555555554 444677889999999999999999999999998755
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCC
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML--------DEGFIP 468 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~p 468 (491)
.-+...|-.+..+|...|..++|.+.++.++... +-+...-..|...+.+.|+.++|.+.+..|. ..+..|
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 5578899999999999999999999999998863 2345556677788999999999999999954 334667
Q ss_pred CHHHHHHHHHHHHhcCCccc
Q 011201 469 DLATYNSYMDGLSNARKSVR 488 (491)
Q Consensus 469 ~~~~~~~ll~~~~~~g~~~~ 488 (491)
+..........+.+.|+.++
T Consensus 525 e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 77777778888888888765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-12 Score=130.26 Aligned_cols=357 Identities=9% Similarity=-0.058 Sum_probs=258.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC------------------
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR------------------ 169 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------ 169 (491)
+......+.-...+.|+.++|..+++........ + . . +.....-++..|.+.+.
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~--~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD----A-R--L-SQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc----c-c--c-CHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 4555666666778889999999999988763211 0 0 0 12334456666666555
Q ss_pred -------hhHHHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 170 -------MNDGLLAFEAMRKLIDG-RP--SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 170 -------~~~a~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
..++....+......+. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence 22222223333332222 34 67788888888887 8899999988887765 356544444455557899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
++++|...|+++... .|+...+..+...+.+.|+.++|..++++..+.+.. +...+..+.......|++++|...++
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998654 345556777788899999999999999999886522 23333334444456699999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
+..+... +...+..+..++.+.|+.++|++.+++..+..+. +...++.+...+...|+.++|++.+++..+... -+
T Consensus 601 ~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~ 676 (987)
T PRK09782 601 RSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DD 676 (987)
T ss_pred HHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 9987754 5778899999999999999999999999998654 677888888899999999999999999998532 25
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
...+..+..++...|++++|...++...+.. |+ ..+.-.......+..+++.|.+-+++.. .+.|+..+....-.
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~--~~~~~~~a~~~~g~ 752 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRW--TFSFDSSIGLRSGA 752 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHh--hcCccchhccccch
Confidence 6788889999999999999999999998863 44 3555556666777778888888887776 34555554444444
Q ss_pred HHHhcCCc
Q 011201 479 GLSNARKS 486 (491)
Q Consensus 479 ~~~~~g~~ 486 (491)
.+...+++
T Consensus 753 ~~~~~~~~ 760 (987)
T PRK09782 753 MSTANNNV 760 (987)
T ss_pred Hhhhcccc
Confidence 44444433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-12 Score=124.53 Aligned_cols=283 Identities=10% Similarity=-0.006 Sum_probs=216.2
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHhcCChhH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSI-YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN--ILISGFCRNKKFDL 243 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~ 243 (491)
.|++++|.+.+....+.. ++... |-.......+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 699999998888766531 22333 333344557889999999999999875 44543332 33667889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHH
Q 011201 244 ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS-------VTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 244 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~ 316 (491)
|.+.++++.+.... +......+...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999988654 6788889999999999999999999999988755322 133333444444455666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 317 LVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
+++.+.+. .+.+......+...+...|+.++|.+++++..+.. ++... .++.+....++.+++++..++..+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-
Confidence 66665433 23466778889999999999999999999988853 34421 23444556699999999999998863
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.-|...+..+...|.+.|++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+.+++-..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 225667888899999999999999999999886 68999999999999999999999999998764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-12 Score=123.39 Aligned_cols=299 Identities=10% Similarity=-0.003 Sum_probs=214.8
Q ss_pred HHHHHHHH--HHcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 157 FHFAVNAF--VKANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 157 ~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+. ...|+++.|.+.+.+..+. .|+ ...+-.....+.+.|+.+.|.+.+.+..+....++....-....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 33444443 3589999999999887765 344 33344456778888999999999999876532222233344577
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHH---HhcC
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCE-ILVDGL---CNEG 309 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~---~~~g 309 (491)
.+...|+++.|.+.++++.+.... +...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999998654 6778889999999999999999999999998754 333332 111222 2233
Q ss_pred CHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHH
Q 011201 310 RVLKACELVIDFSRRGVL---PKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIA-CTTLIEGLRRLRKGVEAS 385 (491)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~ 385 (491)
..+++.+.+..+.+.... .+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 333334455555544321 3677888899999999999999999999998754322211 122222234457788888
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 386 GLMEKMLKEGILPDS---VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 386 ~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
+.+++..+. .|+. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 320 ~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 320 KLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888775 3443 45668888999999999999999964444457898889999999999999999999999864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-12 Score=123.07 Aligned_cols=283 Identities=12% Similarity=0.058 Sum_probs=218.6
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHH-HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHH--HHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERI-FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYN--VLIN 198 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~li~ 198 (491)
.|+++.|...+........ .+.. +-.......+.|+++.|.+.+.++.+. .|+...+. ....
T Consensus 97 eGd~~~A~k~l~~~~~~~~------------~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~ 161 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE------------QPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVR 161 (398)
T ss_pred CCCHHHHHHHHHHHHhccc------------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHH
Confidence 4999999988876544321 1223 333355558899999999999999875 35543322 3367
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 011201 199 GFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNV-------VSFNTLIRGFF 271 (491)
Q Consensus 199 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~ 271 (491)
.+...|++++|.+.++++.+.... +...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999887643 6778889999999999999999999999988665322 13334444444
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHH
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALE 351 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 351 (491)
...+.+...++++.+-+. .+.+......+...+...|+.++|.+++++..+... +. -..++.+.+..++.+++.+
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~--~l~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DE--RLVLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CH--HHHHHHhhccCCChHHHHH
Confidence 455556666666665432 234677888899999999999999999999988533 33 2224455556799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 352 VVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 352 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
..+...+.... |...+.++...+.+.|++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.+++++...
T Consensus 316 ~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999887654 777888999999999999999999999998 579999999999999999999999999987654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-12 Score=121.39 Aligned_cols=301 Identities=11% Similarity=0.025 Sum_probs=219.7
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 111 TFLFIVRSLA--SSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 111 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
.+..+.+++. ..|+++.|.+.+....+.. |.....+-....+..+.|+.++|.+.+++..+.. |
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~-----------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p 149 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA-----------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---G 149 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C
Confidence 3444444444 4499999999998876543 2222344455778888999999999999987753 4
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-H
Q 011201 189 SV--SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFN-T 265 (491)
Q Consensus 189 ~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ 265 (491)
+. ...-.....+...|+++.|.+.++.+.+.... +...+..+...+.+.|++++|.+++..+.+.+.. +...+. .
T Consensus 150 ~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l 227 (409)
T TIGR00540 150 NDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADL 227 (409)
T ss_pred cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 43 34444588889999999999999999988633 6678889999999999999999999999998765 333332 1
Q ss_pred HHH---HHHcCCCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHH
Q 011201 266 LIR---GFFGERKFDEGVNMAYEMIELGCE---FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDY-FGLVE 338 (491)
Q Consensus 266 li~---~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~ 338 (491)
-.. +....+..+++.+.+..+.+.... .+...+..+...+...|+.++|.+++++..+.........+ .....
T Consensus 228 ~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~ 307 (409)
T TIGR00540 228 EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPI 307 (409)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHh
Confidence 112 223333444444555555554321 37788888999999999999999999999987544322111 11222
Q ss_pred HHHcCCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 011201 339 KLCGEGNAGIALEVVDELWKKGNLPSV--IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRT 416 (491)
Q Consensus 339 ~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 416 (491)
.....++.+.+.+.++...+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.
T Consensus 308 ~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 308 PRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDK 386 (409)
T ss_pred hhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH
Confidence 234457888899999888776433 44 667788899999999999999999644444679999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011201 417 VDADRLRLLAST 428 (491)
Q Consensus 417 ~~a~~~~~~~~~ 428 (491)
++|.++|++...
T Consensus 387 ~~A~~~~~~~l~ 398 (409)
T TIGR00540 387 AEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-12 Score=124.58 Aligned_cols=388 Identities=10% Similarity=0.016 Sum_probs=263.6
Q ss_pred CCchhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH
Q 011201 86 PQFTHYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV 165 (491)
Q Consensus 86 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (491)
+.-...++..+..+-..++ .++.+.+.|...+.--|++..++.+...+.... ...+...+.|..+.++|-
T Consensus 249 ~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t--------~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT--------ENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred hHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHH
Confidence 3334556777777766544 456678888999999999999999999887653 112334567889999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----C
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK----K 240 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~ 240 (491)
..|++++|...|.+..+.. ..+ +..+-.|...|.+.|+++.+...|+...+... -+..+..+|...|+..+ .
T Consensus 319 a~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred hhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHH
Confidence 9999999999999888753 122 45566788999999999999999999887632 25556666766676664 4
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM----IELGCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
.+.|..++.+..+.-. .|...|-.+...+....-+.. +.+|... ...+-.+.....|.+.......|++++|..
T Consensus 396 ~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 5677777777666543 267777777766655544433 6655543 344555677888888888888888888888
Q ss_pred HHHHHHhC---CCCCCH------hhHHHHHHHHHcCCC----------------------------------HhHHHHHH
Q 011201 317 LVIDFSRR---GVLPKD------FDYFGLVEKLCGEGN----------------------------------AGIALEVV 353 (491)
Q Consensus 317 ~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~----------------------------------~~~a~~~~ 353 (491)
.|...... ...++. .+-..+...+-..++ ..+|...+
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 88777654 112222 111222222233333 44444445
Q ss_pred HHHHHcC-CCCCHHHHHH----------------------------------HHHHHH------------hcCChHHHHH
Q 011201 354 DELWKKG-NLPSVIACTT----------------------------------LIEGLR------------RLRKGVEASG 386 (491)
Q Consensus 354 ~~m~~~~-~~~~~~~~~~----------------------------------li~~~~------------~~g~~~~a~~ 386 (491)
+...... ..|+..++-. |...|. ..+..++|++
T Consensus 554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 4444322 2232222111 111111 1234556777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 011201 387 LMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE-G 465 (491)
Q Consensus 387 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~ 465 (491)
+|.+.++... -|...-+.+.-+++..|++.+|..+|....+... -+..+|-.+.++|...|++..|+++|+...+. +
T Consensus 634 ~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 634 LYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777776532 2566666777778888999999999999888743 35678889999999999999999999987765 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCccccc
Q 011201 466 FIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 466 ~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
-.-+..+.+.|.+++.+.|++.+|.
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 4667889999999999999988774
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-12 Score=109.43 Aligned_cols=288 Identities=16% Similarity=0.146 Sum_probs=224.6
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcC
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV------VTFNILISGFCRNK 239 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~ 239 (491)
-.++.++|++.|-+|.+. .+-+..+--+|.+.|-+.|.+|.|+++.+.+.++ ||. .....|..-|...|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 357789999999999984 3456777888999999999999999999998875 332 23345667788999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS----VTCEILVDGLCNEGRVLKAC 315 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~ 315 (491)
-+|.|+++|..+.+.|.- -......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999999986432 4567788999999999999999999999887654332 23444555555668899999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 395 (491)
.++....+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++.++.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999999887654 4444556778889999999999999999998776667788899999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 011201 396 ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR---ENRRKEGENLVNEMLDE 464 (491)
Q Consensus 396 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 464 (491)
. ....-..+...-......+.|..++.+-... +|+...+..+|..-.. .|+..+-+.+++.|+..
T Consensus 280 ~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 T--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred C--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3 3333344444445556677777776655554 6999999999987643 46778888888888754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=135.92 Aligned_cols=255 Identities=17% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
...+.+.|++++|++++++.......+.|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44444555555555555332221101223333444444444445555555555555443322 33334444433 34445
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG-CEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
+++|.+++.+..+.. ++...+..++..+.+.|+++++.++++.+.+.. ...+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555444433321 233334444444444455554444444443221 12233334444444444444444444444
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
...+.... |......++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|+.+|++..+.. +-|
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 44443322 23333344444444444444444443333321 1122233334444444444444444444433321 113
Q ss_pred HHHHHHHHHHHHhcCChHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
..+...+..++...|+.++|.++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHHHHHHHHHHT-----------
T ss_pred ccccccccccccccccccccccc
Confidence 33333334444444444444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-13 Score=120.81 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=68.5
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011201 117 RSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVL 196 (491)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 196 (491)
..+.+.+.|.+|+..++-.+..-.... ...-..+.+.+.-.|.+.|.++.|+.-|+.+.+. .|+..+--.|
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsin------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl 315 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSIN------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNL 315 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccc------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhh
Confidence 344555667777777766554322211 0112345667777788999999999999998775 4887776566
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCh
Q 011201 197 INGFVKCREFDKALGFYDRMVRDRVKPDV 225 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 225 (491)
+-++..-|+-++..+.|.+|......+|.
T Consensus 316 ~i~~f~i~d~ekmkeaf~kli~ip~~~dd 344 (840)
T KOG2003|consen 316 IICAFAIGDAEKMKEAFQKLIDIPGEIDD 344 (840)
T ss_pred hhhheecCcHHHHHHHHHHHhcCCCCCCc
Confidence 66677779999999999999875444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-15 Score=135.13 Aligned_cols=262 Identities=16% Similarity=0.094 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDR-VKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
.+...+.+.|++++|++++++..... ..-|...|..+...+...++++.|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55788889999999999997654443 2335566666777778899999999999999987654 56677777777 799
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHcCCCHhHHHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRG-VLPKDFDYFGLVEKLCGEGNAGIALEV 352 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~ 352 (491)
+++++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876543 456777888899999999999999999987543 345777888899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011201 353 VDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD 432 (491)
Q Consensus 353 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 432 (491)
+++..+..+. |....+.++..+...|+.+++.++++...+.. ..|...+..+..++...|+.++|..+++...+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9999997654 67888999999999999999999998887763 3455677888999999999999999999998863 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 433 PDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 433 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.|......+.+++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4888889999999999999999999887753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-11 Score=108.74 Aligned_cols=285 Identities=14% Similarity=0.080 Sum_probs=219.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcCC
Q 011201 197 INGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCN--PNVVSFNTLIRGFFGER 274 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g 274 (491)
..++....+.+++.+-.+.....|+.-+...-+....+.-...|+++|+.+|+++.+...- -|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3455566677888888888888887655555555555666778999999999999887321 16677777765443322
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
++ .++.+-.-.--+....|+.++.+-|+-.++.++|...|+..++.+.. ....|+.+.+-|....+...|.+.++
T Consensus 314 kL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 21 12222111111334578888999999999999999999999988765 55678999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 355 ELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP 433 (491)
Q Consensus 355 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p 433 (491)
...+.++. |...|-.|.++|.-.+...-|+-+|++..+ ++| |...|.+|..+|.+.++.++|++.|......| ..
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 99998655 899999999999999999999999999988 455 67899999999999999999999999999876 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH--HHHHHHHHHhcCCccccc
Q 011201 434 DGMTYHILVSGYTRENRRKEGENLVNEMLDE----GFIPDLAT--YNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 434 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~--~~~ll~~~~~~g~~~~A~ 490 (491)
+...|..|.+.|-+.++.++|...|++.++. |..-+... ..=|..-+.+.+++++|.
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 6788999999999999999999999887752 43333222 222556678888888873
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-11 Score=106.01 Aligned_cols=273 Identities=14% Similarity=0.120 Sum_probs=210.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHH
Q 011201 203 CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPN---VVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 203 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a 279 (491)
+++.++|.+.|-+|.+.... +..+.-+|.+.|.+.|..|.|+++.+.+.++---+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 47899999999999885322 444556788999999999999999999987611111 22345667788999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHcCCCHhHHHHHHHH
Q 011201 280 VNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKD----FDYFGLVEKLCGEGNAGIALEVVDE 355 (491)
Q Consensus 280 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~ 355 (491)
+++|..+.+.+. .-......|+..|....+|++|+++-+++.+.+..+.. ..|.-+...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999988653 35677889999999999999999999999888765542 3466677777788999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 011201 356 LWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDG 435 (491)
Q Consensus 356 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 435 (491)
..+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++...++..+.+.. ++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 8886533 3333344566788999999999999999998665557788899999999999999999999988864 344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 436 MTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
..-..+-..-....-.+.|...+.+-+.. +|+...+..++..-..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 44445555444455566677766666644 6999999999886543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-10 Score=99.72 Aligned_cols=290 Identities=12% Similarity=0.016 Sum_probs=207.4
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
.|++.+|.+...+-.+.. .-....|-.-..+.-..|+.+.+-.++.+..+..-.++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 688888888887766542 223444555556667778888888888887765334455566666777778888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 247 LFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS-------VTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 247 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
-++++.+.+.. +.........+|.+.|++.+...++..|.+.|.--+. .+|+.++.-....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888777655 5667778888888888888888888888888765544 456666666555555565555666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE-GILP 398 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p 398 (491)
+...+ .+-+...-.+++.-+.++|+.++|.++.++..+.+..+. -...-.+.+-++.+.-++..++-.+. +.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-- 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-- 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--
Confidence 55432 233445567778888888999999988888888776554 22233456677777777777766654 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011201 399 DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIP 468 (491)
Q Consensus 399 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 468 (491)
+...+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.++|.+.|+.++|.++.++....-.+|
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 3467778888888889999999998877765 5888899999999999999999998888876443333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-12 Score=119.86 Aligned_cols=285 Identities=13% Similarity=0.052 Sum_probs=213.9
Q ss_pred CChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHH
Q 011201 168 NRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRV--KPDVVTFNILISGFCRNKKFDLAL 245 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~A~ 245 (491)
-+.++|+..|+++...- .-+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+..+-+.- ++
T Consensus 333 y~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----AL 406 (638)
T ss_pred HHHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HH
Confidence 35678999999866642 23446677788999999999999999999877521 126778888776553322 12
Q ss_pred HHH-HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 246 GLF-REMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 246 ~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
..+ +++.+.. +-...+|.++.++|.-+++.+.|++.|++.++.+.. ...+|+.+..-+.....+|+|...|+..+..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 2222221 125789999999999999999999999999876533 6788888888888889999999999887765
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011201 325 GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFN 404 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 404 (491)
... +-..|..+.-.|.+.++++.|+-.|++..+.++. +.+....+...+-+.|+.++|++++++......+ |...--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 333 2334555677899999999999999999887765 6777777888888999999999999998875433 444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 405 CLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 405 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.-...+...++.++|...++++++. ++-+...|..+...|.+.|+.+.|+.-|-.|.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 4455667789999999999999886 2334566777888999999999999999888854
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.8e-11 Score=114.43 Aligned_cols=330 Identities=12% Similarity=0.046 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+...-..+++ |++++|.+++.++.+.. +.+...|.+|...|-..|+.+++...+-..-.... -|...|..+..
T Consensus 140 ~~ll~eAN~lfar-g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~lad 215 (895)
T KOG2076|consen 140 RQLLGEANNLFAR-GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHH
Confidence 3344444445555 99999999999999863 56788999999999999999999988765544432 26688999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcC
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSV----TCEILVDGLCNEG 309 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g 309 (491)
...+.|.++.|.-.|.+.++.... +...+---+..|-+.|+...|.+-|.++.......|.. ....++..+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987433 55555566788999999999999999998875433332 2334566677788
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHH--------------------
Q 011201 310 RVLKACELVIDFSRR-GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIAC-------------------- 368 (491)
Q Consensus 310 ~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-------------------- 368 (491)
+.+.|.+.++..... +-..+...++.++..|.+...++.|......+......+|..-|
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999999887763 23345667899999999999999999988887763222222211
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 011201 369 ------TTLIEGLRRLRKGVEASGLMEKMLKEGI--LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHI 440 (491)
Q Consensus 369 ------~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 440 (491)
--+.-++.+.+..+....+...+.+..+ .-+...|.-+..+|...|++.+|..++..+......-+...|-.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 1223344455555555666666666653 33567888999999999999999999999988765667789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccccc
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDEGFIPDL-ATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~ 490 (491)
+..+|...|.+++|.+.|+..+.. .|+. ..-.+|...+-+.|+.|+|.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHH
Confidence 999999999999999999999854 4544 45566777888999998874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-10 Score=100.32 Aligned_cols=296 Identities=13% Similarity=0.085 Sum_probs=235.1
Q ss_pred HHHHHHHHhc--CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 113 LFIVRSLASS--YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 113 ~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
..+..++.+. |+|.+|..++.+-.+.+.. ..-.|-....+--+.|+.+.+-..+.+.-+..+ .++.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-----------p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l 153 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-----------PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTL 153 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-----------hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchH
Confidence 3455555554 9999999999886655432 123455567777789999999999999988732 4677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNV-------VSF 263 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~ 263 (491)
..+-+........|+.+.|..-++++.+.+.. +........++|.+.|++.....++.+|.+.|.--+. .+|
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 77888889999999999999999999887644 6778899999999999999999999999999876554 367
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011201 264 NTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE 343 (491)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 343 (491)
+.++.-....+..+.-...+++.-.. .+-+...-..++.-+.++|+.++|.+++.+..+++..++. ...-.+.+-
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~ 307 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRP 307 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCC
Confidence 77888777777777766677765433 3446677788888999999999999999999999887762 222345566
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 344 GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLR 423 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 423 (491)
++.+.-.+..++-.+.... ++..+.+|...|.+++.+.+|.+.|+...+ ..|+..+|+.+.+++.+.|+..+|.++.
T Consensus 308 ~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 7777777777766554322 568889999999999999999999997777 5899999999999999999999999998
Q ss_pred HHHHHC
Q 011201 424 LLASTK 429 (491)
Q Consensus 424 ~~~~~~ 429 (491)
++....
T Consensus 385 ~e~L~~ 390 (400)
T COG3071 385 REALLL 390 (400)
T ss_pred HHHHHH
Confidence 876643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=116.84 Aligned_cols=282 Identities=12% Similarity=0.026 Sum_probs=219.6
Q ss_pred ChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHh
Q 011201 124 RFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG-RPSVSIYNVLINGFVK 202 (491)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~ 202 (491)
+..+|...|..+.... +.+..+...+..+|...+++++|.++|+.+.+.... ..+.+.|.+.+-.+-+
T Consensus 334 ~~~~A~~~~~klp~h~-----------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-----------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHhhHHhc-----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 4567777777743321 223367788899999999999999999999987433 2468889988866543
Q ss_pred cCCH-HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 011201 203 CREF-DKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVN 281 (491)
Q Consensus 203 ~~~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 281 (491)
.=.. -.|.++.+.+. -.+.+|.++.++|.-.++.+.|++.|++..+.... ...+|+.+..-+.....+|.|..
T Consensus 403 ~v~Ls~Laq~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred hHHHHHHHHHHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHH
Confidence 2111 12333333332 26789999999999999999999999999876332 67889998888999999999999
Q ss_pred HHHHHHHcCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 282 MAYEMIELGCEFSSVTCE---ILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 282 ~~~~m~~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
.|+..+.- |...|+ -+.-.|.+.++++.|+-.|+...+-+.. +.+....+...+-+.|+.++|++++++...
T Consensus 477 ~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 477 SFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 99987643 455555 4567899999999999999999887765 667778888889999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 359 KGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 359 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
.+.+ |+..---.+..+...+++++|+..++++++ +.|+ ...|..+.+.|.+.|+.+.|..-|..+.+..
T Consensus 552 ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 552 LDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred cCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7665 444444456667778999999999999998 5666 5567778889999999999999888887753
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-10 Score=104.03 Aligned_cols=378 Identities=11% Similarity=0.092 Sum_probs=227.4
Q ss_pred hHHHHHHHhhcC-CCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHc
Q 011201 91 YDFHIFAWASTI-DSFRHD--HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKA 167 (491)
Q Consensus 91 ~a~~~f~~~~~~-~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (491)
.|+.|++.+..+ +.+.-+ ....+.+.-.+.+.|+++.|+..|+...+.. |.....++.++ ++...
T Consensus 255 kaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-----------pn~~a~~nl~i-~~f~i 322 (840)
T KOG2003|consen 255 KAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-----------PNFIAALNLII-CAFAI 322 (840)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-----------ccHHhhhhhhh-hheec
Confidence 478888877654 222222 2345556666788899999999999887654 44444555544 44557
Q ss_pred CChhHHHHHHHHHHHhcCC-----------CCCHHHHHHHHH-----HHHhcC--CHHHHHHHHHHHhhCCCCCChh---
Q 011201 168 NRMNDGLLAFEAMRKLIDG-----------RPSVSIYNVLIN-----GFVKCR--EFDKALGFYDRMVRDRVKPDVV--- 226 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~li~-----~~~~~~--~~~~A~~~~~~m~~~~~~p~~~--- 226 (491)
|+-++..+.|.+|....+. .|+....|.-|. -.-+.+ +.++++-.-.++..--+.|+-.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~ 402 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC 402 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence 8888889999998765432 133333333331 111111 1222222222222222223211
Q ss_pred hH----------H--------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------------
Q 011201 227 TF----------N--------ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG------------------- 269 (491)
Q Consensus 227 ~~----------~--------~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~------------------- 269 (491)
-| . .-..-+.+.|+++.|+++++-+.+..-+.-...-+.|-..
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 01 0 0122367899999999999887665322111111111110
Q ss_pred -----------------HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 270 -----------------FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 270 -----------------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
....|++++|.+.|++.....-.-....|++ .-.+-..|++++|++.|-.+..- +.-+..+
T Consensus 483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~ev 560 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEV 560 (840)
T ss_pred hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence 1133677777777777766543322233332 22345667778887777655332 1124556
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD 412 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 412 (491)
...+.+.|-...+..+|++++.+.... +..|+....-|...|-+.|+-..|.+.+-+--+- +.-+..|...|..-|..
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHh
Confidence 666777777777778888877766554 3346777777888888888877777765443332 34456677777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 011201 413 VGRTVDADRLRLLASTKGLDPDGMTYHILVSGY-TRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 413 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
..-+++++.+|++..- +.|+..-|..+|..| .+.|++++|+++|++...+ +.-|...+.-|++.+...|..+
T Consensus 639 tqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred hHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 7778888888877654 478888888887544 5678999999999888765 5667777777777777766543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-10 Score=102.79 Aligned_cols=312 Identities=11% Similarity=0.033 Sum_probs=232.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhc
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVTFNILISGFCRN 238 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~ 238 (491)
..++......++++.-.+..... |.+-+...-+....+.-...++++|+.+|+++.+...- -|..+|..++..--..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 45555666777777776666665 44444444444455666778999999999999887321 2667787776543322
Q ss_pred CChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011201 239 KKFDL-ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317 (491)
Q Consensus 239 ~~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 317 (491)
..+.- |..++ ++.+ . -..|..++.+-|.-.++.++|..+|++..+.+.. ....|+.+..-|....+...|.+-
T Consensus 313 skLs~LA~~v~-~idK--y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NIDK--Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHH-Hhcc--C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 22221 22221 1121 2 4567778888888899999999999999988654 567889999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011201 318 VIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGIL 397 (491)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 397 (491)
++...+-+.. |-..|..|.++|.-.+...-|+-.|++.....+. |...|.+|..+|.+.++.++|++-|++....|-.
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 9999887655 7778999999999999999999999999886544 8999999999999999999999999999987533
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011201 398 PDSVTFNCLLEDLCDVGRTVDADRLRLLAST----KGLDPD--GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA 471 (491)
Q Consensus 398 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 471 (491)
+...+..|.+.|.+.++.++|...++..++ .|..-+ .....-|..-+.+.+++++|.......... .+...
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 678899999999999999999998877654 233222 222333556778899999998887777643 66777
Q ss_pred HHHHHHHHHHhcC
Q 011201 472 TYNSYMDGLSNAR 484 (491)
Q Consensus 472 ~~~~ll~~~~~~g 484 (491)
--..|++.+.+..
T Consensus 542 eak~LlReir~~~ 554 (559)
T KOG1155|consen 542 EAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHhc
Confidence 7777877776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-09 Score=105.91 Aligned_cols=361 Identities=15% Similarity=0.066 Sum_probs=246.2
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
+.|..-|..+..+. ++|...+.--.......+++..|..+|..+......+.+| ..-.+..++.+.|+
T Consensus 147 ~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD----------~rIgig~Cf~kl~~ 214 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD----------VRIGIGHCFWKLGM 214 (1018)
T ss_pred HHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC----------ccchhhhHHHhccc
Confidence 45677777776642 2343334334444555689999999999977655433221 12234577889999
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR---EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
.+.|+..|.+..+.. +-++.++-.|...-.... .+..+..++........ -|+...+.|.+.|.-.|++..++.
T Consensus 215 ~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 215 SEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred hhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHH
Confidence 999999999999873 234444444433333333 35566666666544432 377788889999999999999999
Q ss_pred HHHHHHHcCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 247 LFREMREKGCN--PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 247 ~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
+...+...... .-...|..+.++|-..|++++|..+|.+..+..-.--...+.-+...|.+.|+++.+...|+.+.+.
T Consensus 292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 99988876321 1244688899999999999999999988876543222334456788999999999999999998877
Q ss_pred CCCCCHhhHHHHHHHHHcCC----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCC
Q 011201 325 GVLPKDFDYFGLVEKLCGEG----NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML----KEGI 396 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~ 396 (491)
... +..+...|...|...+ ..+.|..++.+..+..+. |...|-.+...+....- ..++.+|.... ..+-
T Consensus 372 ~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~ 448 (1018)
T KOG2002|consen 372 LPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGK 448 (1018)
T ss_pred Ccc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCC
Confidence 433 4556666666666664 456777777777766433 77778777777765444 34466665443 4455
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK---GLDPDGM-------TYHILVSGYTRENRRKEGENLVNEMLDEGF 466 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 466 (491)
.+-....|.+.......|++.+|...|...... ...+|.. -|| +...+-..++.+.|.+.|+.+.+.
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke-- 525 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE-- 525 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--
Confidence 678888999999999999999999998887655 2233331 233 455666778999999999999865
Q ss_pred CCCHH
Q 011201 467 IPDLA 471 (491)
Q Consensus 467 ~p~~~ 471 (491)
.|..+
T Consensus 526 hp~YI 530 (1018)
T KOG2002|consen 526 HPGYI 530 (1018)
T ss_pred CchhH
Confidence 35443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-09 Score=100.01 Aligned_cols=329 Identities=12% Similarity=-0.014 Sum_probs=189.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-H
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-V 190 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 190 (491)
+-....-+.+.|.+++|+..+.+.+... |+-+..|.....+|...|+|++.++.-.+..+. .|+ +
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~ 183 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC-----------PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYV 183 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC-----------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHH
Confidence 3445667888999999999999988753 332456888889999999999988777666654 343 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHH----------------------HHHH---------HhhCC--CCCChhhHHHHHHH---
Q 011201 191 SIYNVLINGFVKCREFDKALG----------------------FYDR---------MVRDR--VKPDVVTFNILISG--- 234 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~----------------------~~~~---------m~~~~--~~p~~~~~~~li~~--- 234 (491)
.++..-..++-..|++++|+. +++. |.+.+ +-|.....++....
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 444444555555555555432 2211 11011 12222211111110
Q ss_pred ------------------------------------------------------------------------HHhcCChh
Q 011201 235 ------------------------------------------------------------------------FCRNKKFD 242 (491)
Q Consensus 235 ------------------------------------------------------------------------~~~~~~~~ 242 (491)
+.-.|+.-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 11224444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
.|.+-|+..+.....+ ...|--+...|.+..+.++..+.|++..+.+.. +..+|..-...+.-.+++++|..=|+...
T Consensus 344 ~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555544443221 122555555666666666666666666665533 55566666666666666677766666666
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---
Q 011201 323 RRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD--- 399 (491)
Q Consensus 323 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--- 399 (491)
..... +...|-.+..+..+.+.+++++..|++..++-+. -+..|+.....+...+++++|.+.|+..++. .|+
T Consensus 422 ~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~ 497 (606)
T KOG0547|consen 422 SLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHL 497 (606)
T ss_pred hcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cccccc
Confidence 55433 4445555555566666777777777777665332 4566777777777777777777777766653 222
Q ss_pred ----HH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 400 ----SV--TFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 400 ----~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
.. +--.++.. .-.+++..|..+++...+... -....|..|...-.+.|+.++|+++|++..
T Consensus 498 ~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 11111111 122667777777776666421 134556777777777777777777777654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=119.43 Aligned_cols=264 Identities=14% Similarity=0.130 Sum_probs=155.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 011201 185 DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFN 264 (491)
Q Consensus 185 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 264 (491)
|..|+..+|..+|.-||..|+.+.|- +|.-|.-+....+...++.++.+..+.++.+.+. .|-..||.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 66788888888888888888888777 7777777666667777888888877777777665 56777888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHcC
Q 011201 265 TLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS-RRGVLPKDFDYFGLVEKLCGE 343 (491)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~ 343 (491)
.|..+|.+.||+.. ++..++ -...++..+...|-...-..++..+. ..+..||. ...+.-....
T Consensus 88 ~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~e 152 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLE 152 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHH
Confidence 88888888887655 222222 11122223333333333333332221 11222222 2223333344
Q ss_pred CCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 344 GNAGIALEVVDELWKKGNL-PSVIACTTLIEGLRRLR-KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
|-++.+.+++..+...... |..+ +++-+.... .+++...+.+...+ .|+..+|.+++++-...|+.+.|..
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHH
Confidence 5555555555444322111 1111 133222211 22222222222222 4777777777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 422 LRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARK 485 (491)
Q Consensus 422 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 485 (491)
++.+|.+.|++.+.+-|..|+-+ .|....+..+++-|.+.|+.|+..|+.-.+..+...|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77777777777777766666655 66777777777777777777777777777777766444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-10 Score=112.40 Aligned_cols=233 Identities=11% Similarity=0.015 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHhc-----CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHH---------cCChhHH
Q 011201 108 DHTTFLFIVRSLASS-----YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVK---------ANRMNDG 173 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a 173 (491)
+...|...++..... +++++|...+++..+.. |.....+..+..++.. .+++++|
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-----------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A 323 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-----------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKA 323 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-----------CccHHHHHHHHHHHHHHHHcCCcccchHHHHH
Confidence 344555555553222 34567888888877653 4445566666555442 2346788
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 174 LLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
...+++..+.. +.+..++..+...+...|++++|...|++..+.+.. +...|..+...+...|++++|...+++..+
T Consensus 324 ~~~~~~Al~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 324 KEHAIKATELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888877753 446677777777777888888888888887766422 455677777777888888888888888777
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011201 254 KGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDY 333 (491)
Q Consensus 254 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 333 (491)
.... +...+..++..+...|++++|...++++.+....-+...+..+..++...|+.++|...+..+...... +....
T Consensus 401 l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~ 478 (553)
T PRK12370 401 LDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAV 478 (553)
T ss_pred cCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHH
Confidence 6433 222333344445567777888887777765432223444566666677777777777777765444221 22333
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 334 FGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 334 ~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
+.+...|+..| +.|...++.+.+
T Consensus 479 ~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 479 NLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccH--HHHHHHHHHHHH
Confidence 44445555555 355555555544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.1e-09 Score=98.30 Aligned_cols=367 Identities=8% Similarity=-0.038 Sum_probs=240.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011201 103 DSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRK 182 (491)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (491)
.++.-+...|..=...|-..|..-.+..++...+..|+... +-..+|..-...|.+.+.++-|..+|....+
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee--------d~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE--------DRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc--------hhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 46677788888888888888888888888888877665422 2245677777778888888888888888777
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 011201 183 LIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVS 262 (491)
Q Consensus 183 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 262 (491)
.+ +.+...|......--..|..++...+|++....-. -....|-....-+-..||+..|..++.+..+.... +...
T Consensus 545 vf--p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 545 VF--PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred hc--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 54 44566676666666666777777777777766522 23445555556666777888888887777776444 5667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCG 342 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 342 (491)
|-.-+..-....+++.|..+|.+.... .++..+|.--+..---.+..++|.+++++.++.-.. -...|..+.+.+-+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHH
Confidence 777777777777778887777777653 345556655555555567777777777776655221 22345556666666
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 343 EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
.++++.|.+.|..-.+. +.-.+..|-.+...-.+.|..-.|..++++..-++.+ +...|...|+.=.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHH
Confidence 67777776666554433 2224455655555556666666666666666655432 556666666666666666666655
Q ss_pred HHHHHHC----C-------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011201 423 RLLASTK----G-------------------------LDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATY 473 (491)
Q Consensus 423 ~~~~~~~----g-------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 473 (491)
..+..+. | ...|..+...+...+....+++.|.+.|.+.++.+ .-+..+|
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~w 854 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAW 854 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHH
Confidence 4443322 1 12355666667777778888888888888888654 2244677
Q ss_pred HHHHHHHHhcCCcc
Q 011201 474 NSYMDGLSNARKSV 487 (491)
Q Consensus 474 ~~ll~~~~~~g~~~ 487 (491)
.-+..-+.+.|.-+
T Consensus 855 a~fykfel~hG~ee 868 (913)
T KOG0495|consen 855 AWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHhCCHH
Confidence 77777777777433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-08 Score=90.57 Aligned_cols=365 Identities=16% Similarity=0.098 Sum_probs=240.8
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..|-++|..+.... ..+...|...+..-.+.+.+..|..+++..+..- |-....|..-+.+=-..|+
T Consensus 90 ~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-----------PRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 90 QRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-----------PRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-----------chHHHHHHHHHHHHHHhcc
Confidence 34778888877643 2344567778888888899999999999887653 3334566666666667899
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 249 (491)
+..|.++|++-... .|+..+|++.|+.-.+.+.++.|..+|++..-. .|++.+|---...=-++|....|..+|+
T Consensus 157 i~gaRqiferW~~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 157 IAGARQIFERWMEW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred cHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999988765 699999999999999999999999999998764 5888888666665556666666555555
Q ss_pred HHHHc-------------------------------------------------------------CC------------
Q 011201 250 EMREK-------------------------------------------------------------GC------------ 256 (491)
Q Consensus 250 ~m~~~-------------------------------------------------------------g~------------ 256 (491)
...+. |+
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 44221 00
Q ss_pred -------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHH---HhcCCHHHHHHHHHH
Q 011201 257 -------NPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS------VTCEILVDGL---CNEGRVLKACELVID 320 (491)
Q Consensus 257 -------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~---~~~g~~~~a~~~~~~ 320 (491)
.-|-.+|--.++.-...|+.+...++|++.+..-.+... .+|--+=-++ ....+.+.+.++++.
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 113334444444444556666666666665543211111 1111111111 234556666666666
Q ss_pred HHhCCCCCCHhhHHHHHHHH----HcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 321 FSRRGVLPKDFDYFGLVEKL----CGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
.++. ++-..+|+..+--+| .++.++..|.+++.... |.-|...+|...|..-.+.++++.+..+|++.++-+.
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 5552 222334444333333 34566777777776654 4557778888888888888899999999998888643
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKG-LDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNS 475 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 475 (491)
. |..+|......=...|+.+.|..+|..+++.. +.--...|...|+-=...|.++.|..+++++++. .+...+|-+
T Consensus 469 e-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWis 545 (677)
T KOG1915|consen 469 E-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWIS 545 (677)
T ss_pred H-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHh
Confidence 3 66777777777778899999999998887752 1222455777777777889999999999998865 334445555
Q ss_pred HHH
Q 011201 476 YMD 478 (491)
Q Consensus 476 ll~ 478 (491)
...
T Consensus 546 FA~ 548 (677)
T KOG1915|consen 546 FAK 548 (677)
T ss_pred HHH
Confidence 443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.2e-09 Score=97.84 Aligned_cols=330 Identities=11% Similarity=0.030 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
...|......--..|..+....++++.+. .||..+..|-....-+-..|++..|..++..+.+.. +.
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~-----------~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pn 616 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVE-----------QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PN 616 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----------hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CC
Confidence 33444444444444555555555555433 344445555555666666677777777777766642 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPN-VVSFNTLI 267 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li 267 (491)
+...|-.-+.....+..++.|..+|.+.... .|+...|.--+..-.-.+..++|++++++..+. -|+ .-.|..+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLG 692 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHh
Confidence 5666767777777777777777777665543 455555655555555556777777777666654 223 33455555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
..+-+.++++.|.+.|..=.+. ++-....|-.+...=-+.|.+-+|..+++...-++.. +...|...|++-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHH
Confidence 6666666666666666543322 2223445555555555666777777777776666554 5666777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 348 IALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAS 427 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 427 (491)
.|..++.+..+.-. -+...|..-|....+.++-....+.+++ +.-|......+...+....++++|.+.|...+
T Consensus 771 ~a~~lmakALQecp-~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 771 QAELLMAKALQECP-SSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHhCC-ccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766665422 2455666666666555554444443332 34577778888888999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 428 TKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 428 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
+.+ +-+..+|.-+...+.++|.-+.-.++++.....
T Consensus 845 k~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 845 KKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred ccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 875 335788888999999999999999999988754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-10 Score=114.40 Aligned_cols=216 Identities=12% Similarity=0.020 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK---------CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
+++|+..|++..+.. +.+...|..+..+|.. .+++++|...+++..+.... +...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 456666666666542 2234445444444332 12355666666655554322 44455555555555666
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
+++|...|++..+.+.. +...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 66666666665554322 3445555555566666666666666665554322 111222223334445555555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 321 FSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
+.+....-+...+..+..++...|+.++|...++++...... +....+.+...|+..| ++|...++.+.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 544322112223444444555555555555555554333111 2233333333444444 244444444433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-13 Score=84.78 Aligned_cols=50 Identities=40% Similarity=0.695 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 433 PDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 433 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.5e-13 Score=84.52 Aligned_cols=49 Identities=51% Similarity=1.007 Sum_probs=23.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 223 PDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFF 271 (491)
Q Consensus 223 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 271 (491)
||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-10 Score=99.26 Aligned_cols=198 Identities=11% Similarity=0.055 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 4566667777777888888888887776642 344666777777777777888887777777665322 4455666667
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCN-PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
.+...|++++|.+.+++..+.... .....+..+...+...|++++|.+.+++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 777777777777777776654211 12334555556666666666666666666554322 3344555555555566666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHH
Q 011201 313 KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDEL 356 (491)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 356 (491)
+|...+++..+.. ..+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666555555441 223333334444444555555555544444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-10 Score=99.24 Aligned_cols=199 Identities=14% Similarity=0.022 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
....+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 355667777777788888888888887765432 24556666777777777777777777777765432 4556666667
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCE-FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
.+...|++++|.+.+++..+.... .....+..+...+...|++++|.+.+.+..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 777777777777777776653211 12233444445555555555555555555543322 2233444444455555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 348 IALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
+|.+.+++..... ..+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555444431 123333334444444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-09 Score=102.06 Aligned_cols=295 Identities=16% Similarity=0.145 Sum_probs=213.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHH
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVT-FNILISGFC 236 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~ 236 (491)
--....+...|++++|++.++..... +.............+.+.|+.++|..+|..+.+++ |+... |..+..+..
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHh
Confidence 33456678999999999999887764 23446667778899999999999999999999985 45544 455555542
Q ss_pred h-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 237 R-----NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF-DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 237 ~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
- ..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 2 235788889999987763 3443333333333332233 2455566777788865 567777777776666
Q ss_pred HHHHHHHHHHHHhC----C----------CCCCH--hhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 311 VLKACELVIDFSRR----G----------VLPKD--FDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEG 374 (491)
Q Consensus 311 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 374 (491)
.+-..+++...... + -.|+. .++.-+...|-..|++++|++.+++.++..+. .+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 66666666665432 1 12333 35566778888999999999999999987543 47788888899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------H--HHHHHHHHH
Q 011201 375 LRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGM------T--YHILVSGYT 446 (491)
Q Consensus 375 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~------~--~~~li~~~~ 446 (491)
+-+.|++.+|.+.++...+.+.. |...-+.....+.+.|++++|.+++......+..|-.. + ......+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987544 77777788888899999999999999887766433221 1 234467899
Q ss_pred hcCCHHHHHHHHHHHHH
Q 011201 447 RENRRKEGENLVNEMLD 463 (491)
Q Consensus 447 ~~g~~~~A~~~~~~m~~ 463 (491)
+.|++..|++.|....+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999888776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-09 Score=95.13 Aligned_cols=323 Identities=14% Similarity=0.069 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV-VTFNILIS 233 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~ 233 (491)
.+....+-|.+.|++++|++.+.+.... .|| ...|.....+|...|+|+++.+.-...++. .|+- ..+.--..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 3555678889999999999999999986 577 788999999999999999998877776654 2321 12222223
Q ss_pred HHHhcCChhHHH----------------------HHHHHH---------HHcC--CCCCHHHHHHHHHHH----------
Q 011201 234 GFCRNKKFDLAL----------------------GLFREM---------REKG--CNPNVVSFNTLIRGF---------- 270 (491)
Q Consensus 234 ~~~~~~~~~~A~----------------------~~~~~m---------~~~g--~~p~~~~~~~li~~~---------- 270 (491)
++-..|++++|+ +++++. .+.+ +-|......+....+
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 333334443332 222211 1000 112221111111110
Q ss_pred -----------------------------------------------------------------HcCCCHHHHHHHHHH
Q 011201 271 -----------------------------------------------------------------FGERKFDEGVNMAYE 285 (491)
Q Consensus 271 -----------------------------------------------------------------~~~g~~~~a~~~~~~ 285 (491)
.-.|+...+..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 112334444444444
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH
Q 011201 286 MIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSV 365 (491)
Q Consensus 286 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 365 (491)
.++....++ ..|--+..+|....+.++..+.|....+.+.. +..+|..-..++.-.+++++|..=|++..+.... +.
T Consensus 352 ~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~ 428 (606)
T KOG0547|consen 352 AIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NA 428 (606)
T ss_pred HHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hh
Confidence 444433222 22555566677777777777777777766544 5556777777777777888888888887776533 45
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHHHH--
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD-----PDGMTY-- 438 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-----p~~~~~-- 438 (491)
..|-.+-.+..+.+++++++..|++.+++ +.-....|+.....+...+++++|.+.|+..++..-. .+...+
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 55666666666778888888888888776 4445677888888888888888888888887764211 112111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccccc
Q 011201 439 HILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 439 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~ 490 (491)
..++..-. .+++..|.+++++.++. .|. ...|..|...-.+.|+.++|+
T Consensus 508 Ka~l~~qw-k~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 508 KALLVLQW-KEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred hhHhhhch-hhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHH
Confidence 12222222 37888888888888754 333 356788888888888888774
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-10 Score=96.04 Aligned_cols=228 Identities=11% Similarity=0.014 Sum_probs=182.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH-HHHHHHHH
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF-NILISGFC 236 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~ 236 (491)
+.+.++|.+.|.+.+|.+.|+...+. .|-+.+|-.|-++|.+-.+.+.|+.+|.+-.+. .|-.+|| ..+.+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 56789999999999999999988776 478888888999999999999999999987765 3444444 55667778
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
..++.++|.++|+...+.... ++.....+..+|.-.++.+-|+.+|+++.+-|+. +...|+.+.-+|.-.+++|.++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 889999999999998876433 6777777888888899999999999999999976 77888888888888899999998
Q ss_pred HHHHHHhCCCCCC--HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 317 LVIDFSRRGVLPK--DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 317 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
-|+.....-..++ ..+|..+-......||+..|.+.|+-....+.. +...+|.|...-.+.|+.++|..++.....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 8888775433332 335666777778888999998888887776544 567788887777888888888888887765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-10 Score=96.08 Aligned_cols=233 Identities=13% Similarity=-0.026 Sum_probs=181.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHh
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTC-EILVDGLCN 307 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~ 307 (491)
+-+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+.+.|+.++.+-.+. .|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56778888888888888888887765 456778888888888888888888888887654 3444444 445567777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGL 387 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 387 (491)
.++.++|.++++...+.... ++.....+...|.-.++.+.|+..++.+...|+. +...|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 88888999999888776433 5555666667777888999999999999998877 788888888888888999999998
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011201 388 MEKMLKEGILPD--SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 388 ~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 465 (491)
|.+....--.|+ ...|-.+-......|++..|.+.|+...... ..+.+.+|.|...-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s-- 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS-- 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--
Confidence 888876533344 3456666666778899999999999888764 33678899998888999999999999998874
Q ss_pred CCCCH
Q 011201 466 FIPDL 470 (491)
Q Consensus 466 ~~p~~ 470 (491)
+.|+.
T Consensus 458 ~~P~m 462 (478)
T KOG1129|consen 458 VMPDM 462 (478)
T ss_pred hCccc
Confidence 34543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-08 Score=94.59 Aligned_cols=298 Identities=16% Similarity=0.045 Sum_probs=212.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
........+...|++++|+..++.....- .+...........+.+.|+.++|..++..+.+.+ +.|.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I-----------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~ 72 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI-----------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNY 72 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC-----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcH
Confidence 34455677889999999999998755432 2334567778999999999999999999999874 3455
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh-HHHHHHHHHHHcCCCCCHHHHH
Q 011201 191 SIYNVLINGFVKC-----REFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFD-LALGLFREMREKGCNPNVVSFN 264 (491)
Q Consensus 191 ~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~g~~p~~~~~~ 264 (491)
.-|..+..+..-. .+.+...++|+++...- |.......+.-.+.....+. .+...+..+..+|++ .+|+
T Consensus 73 ~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~ 147 (517)
T PF12569_consen 73 DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFS 147 (517)
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHH
Confidence 5566666665222 35788889999887653 44333333322232222333 455666777778864 3566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011201 265 TLIRGFFGERKFDEGVNMAYEMIEL----G----------CEFSS--VTCEILVDGLCNEGRVLKACELVIDFSRRGVLP 328 (491)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 328 (491)
.+-..|......+-..+++..+... + -.|.. .++..+...|...|++++|+++++..+++...
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt- 226 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT- 226 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-
Confidence 7767777666666666666665432 1 12233 34566678888999999999999999988643
Q ss_pred CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------
Q 011201 329 KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSV------- 401 (491)
Q Consensus 329 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------- 401 (491)
....|..-.+.+-..|++.+|.+.++........ |-..-+-.+..+.+.|+.++|.+++....+.+..|-..
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 3667888899999999999999999999987654 77777788888999999999999999998876544322
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 402 -TFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 402 -~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
.......+|.+.|++..|++.|..+.+
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 124555688899999999886655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-08 Score=92.12 Aligned_cols=284 Identities=12% Similarity=0.025 Sum_probs=226.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
++...-...+-+...+++.+..++++...+.. ++....+..-|.++.+.|+..+-..+=.+|.+.-.. ...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 44555555666777899999999999988763 446666677777999999999988888888886433 6789999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--C-CCCCHhhHHHHHHHHHcCCC
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR--G-VLPKDFDYFGLVEKLCGEGN 345 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~~~~~li~~~~~~g~ 345 (491)
-|.-.|+..+|.++|.+....+.. -...|-.....|+-.|..|+|+..+....+. | ..| +.-+.--|.+.++
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t~n 395 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRTNN 395 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHhcc
Confidence 888899999999999988755433 2467888889999999999999988776553 2 223 3334556788999
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCChHHH
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE--GI---L-PDSVTFNCLLEDLCDVGRTVDA 419 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~---~-p~~~~~~~ll~~~~~~g~~~~a 419 (491)
.+.|.++|.+.....+. |+..++.+.......+.+.+|..+|+..... .+ . -...+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999998887544 7888888877777889999999999887632 11 1 2456788999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011201 420 DRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNA 483 (491)
Q Consensus 420 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 483 (491)
+..++...... +.|..++.++.-.|...|+++.|.+.|.+.+ .+.||..+-..++..+...
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 99999998874 5589999999999999999999999999998 7889998888887766443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.1e-07 Score=82.02 Aligned_cols=360 Identities=11% Similarity=0.006 Sum_probs=212.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+...|-.....-...+++..|.++|+..+..... +...|-.-+.+=.+...+..|..++++.....
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-----------~itLWlkYae~Emknk~vNhARNv~dRAvt~l--- 137 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-----------NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--- 137 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-----------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---
Confidence 3344555556666678899999999998765422 13456667888889999999999999988763
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 188 PSV-SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 188 ~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
|-+ ..|--.+..--..|++..|.++|++..+- .|+...|++.|+.=.+-+.++.|..+|+...-. .|++.+|-..
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wiky 213 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKY 213 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHH
Confidence 443 34555555556679999999999998764 899999999999999999999999999998864 5899999888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------
Q 011201 267 IRGFFGERKFDEGVNMAYEMIEL-GC-EFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV------------------ 326 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------------ 326 (491)
..-=.+.|....+..+|+...+. |- ..+...+.+....-.++..++.|.-+++..+.+=.
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQF 293 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 88888889988888888877653 10 01112222222222233444444444443322211
Q ss_pred -------------------------CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH-HHHHHHH--------
Q 011201 327 -------------------------LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSV-IACTTLI-------- 372 (491)
Q Consensus 327 -------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li-------- 372 (491)
..|-.+|.-.++.-...|+.+...++|+.....-..... ..|.-.|
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 112234444555555667777777777776654221110 1111111
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011201 373 EGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCL----LEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRE 448 (491)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 448 (491)
-.-....+.+.+.++|+..++. +.-...||..+ ..--.++.++..|.+++...+. .-|...+|...|..=.+.
T Consensus 374 yeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQL 450 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHH
Confidence 1112345555566666555542 11122232221 1122334455555555544432 234555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc
Q 011201 449 NRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQ 489 (491)
Q Consensus 449 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 489 (491)
+.++...+++++.++-+- -|..+|......-...|++|+|
T Consensus 451 ~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred hhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHH
Confidence 555555555555553321 1334455444444455555444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-07 Score=88.78 Aligned_cols=309 Identities=12% Similarity=0.053 Sum_probs=196.2
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV-SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
|+....+..+...+...|+.+++...+.+..+......+. .........+...|++++|.+.+++..+.... |...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 5556777788888888899999888888776653222332 22223344567789999999999998876322 444444
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011201 230 ILISGFCR----NKKFDLALGLFREMREKGCNPN-VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDG 304 (491)
Q Consensus 230 ~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 304 (491)
. ...+.. .+..+.+.+.++. .....|+ ......+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 2 222222 4455555555554 1122333 344456667888999999999999999987633 56777888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CC--HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHh
Q 011201 305 LCNEGRVLKACELVIDFSRRGVL-PK--DFDYFGLVEKLCGEGNAGIALEVVDELWKKGN-LPSVIAC-T--TLIEGLRR 377 (491)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~ 377 (491)
+...|++++|..+++........ ++ ...|..+...+...|++++|..++++...... .+..... + .++.-+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 99999999999999988765432 22 23456788899999999999999999865432 1122211 2 23333444
Q ss_pred cCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHH
Q 011201 378 LRKGVEASGL--MEKMLKEGI--LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD---P-----DGMTYHILVSGY 445 (491)
Q Consensus 378 ~g~~~~a~~~--~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~---p-----~~~~~~~li~~~ 445 (491)
.|....+.++ +........ ............++...|+.++|..+++.+...... - .+........++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 5544433333 211111111 111122235566778889999999999887653221 0 122222233456
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 011201 446 TRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 446 ~~~g~~~~A~~~~~~m~~~ 464 (491)
...|+.++|.+.+.+....
T Consensus 318 ~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6899999999999888754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9e-09 Score=98.31 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=90.3
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----cC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL----ID-GRPSVSI-YNVLINGFVKCREFDKALGFYDRMVRD----- 219 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~----- 219 (491)
|....++..+...|...|+++.|+.+++...+. .| ..|.+.+ .+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 444566667788888888888888888776553 11 1233322 333556666677777777777766441
Q ss_pred CC-CCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHc-
Q 011201 220 RV-KPD-VVTFNILISGFCRNKKFDLALGLFREMREK-----GCN-PNV-VSFNTLIRGFFGERKFDEGVNMAYEMIEL- 289 (491)
Q Consensus 220 ~~-~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 289 (491)
|- .|. ..+++.|...|.+.|++++|...+++..+- |.. |.+ ..++.+...|+..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 11 111 234555566667777766666666554321 111 111 12344455555666666666665544321
Q ss_pred --CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 290 --GCEFS----SVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 290 --~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
-+.++ ..+++.|...|...|++++|.++++.++
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 01111 2344455555555555555555554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-08 Score=97.22 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----c
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL----I 184 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 184 (491)
..++..+...|...|+++.|..+++...+.-+... + ...+......+.+...|...+++++|+.+|+++... .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~--G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTS--G-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcc--C-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 35677799999999999999999998876511100 0 234555667777889999999999999999998654 1
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHc-
Q 011201 185 D-GRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRD-----RV-KPDVV-TFNILISGFCRNKKFDLALGLFREMREK- 254 (491)
Q Consensus 185 ~-~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~-~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~- 254 (491)
| ..|. ..+++.|..+|.+.|++++|...+++..+- |. .|.+. .++.+...++..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 1222 456888888999999999999888875441 21 12222 3566777888999999999999876543
Q ss_pred ----CCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC----C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 255 ----GCN--PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG----C---EFSSVTCEILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 255 ----g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
|.. --..+++.|...|...|++++|.+++++.++.. - .-....++.+...|.+.+++++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 221 123578999999999999999999999886531 1 112345667777777888888787777654
Q ss_pred HhC----CC--CCCHhhHHHHHHHHHcCCCHhHHHHHHHH
Q 011201 322 SRR----GV--LPKDFDYFGLVEKLCGEGNAGIALEVVDE 355 (491)
Q Consensus 322 ~~~----~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 355 (491)
..- |. +-...+|..|...|...|+++.|.++.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 321 11 11123344444444444444444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-07 Score=88.94 Aligned_cols=286 Identities=13% Similarity=-0.004 Sum_probs=222.8
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 011201 152 EMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNIL 231 (491)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 231 (491)
.+..+.......+-..+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.+|.+.-+ -...+|-++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhH
Confidence 345566677788889999999999999999865 56667777778899999998888888888877633 267799999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011201 232 ISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 232 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 311 (491)
.-.|.-.|+..+|.+.|.+....... -...|-.....|+-.|..|+|+..|...-+.=.. ...-+--+.--|.+.+..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccH
Confidence 98888899999999999987765222 3568999999999999999999998877654111 112223344467788999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCChHHHH
Q 011201 312 LKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK----G--NLPSVIACTTLIEGLRRLRKGVEAS 385 (491)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~~~~~~~~~li~~~~~~g~~~~a~ 385 (491)
+.|.+.|.+....... |..+.+-+.-.....+.+.+|...|+..... + ...-..+++.|..+|.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999988765433 5666777777777789999999999887631 1 1124567888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 386 GLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYT 446 (491)
Q Consensus 386 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 446 (491)
..+++.+... .-+..++.++.-.|...|+++.|.+.|.+..- +.||-.+...++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999998863 44888999999999999999999999998775 4788777666665443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.3e-09 Score=101.45 Aligned_cols=246 Identities=14% Similarity=0.154 Sum_probs=165.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011201 103 DSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRK 182 (491)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (491)
.|..|+..||..+|.-|+..|+.+.|- +|..|..... |.....|+.++....+.++.+.+.
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL----------pv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL----------PVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc----------cccchhHHHHHhcccccccccCCC--------
Confidence 678899999999999999999999997 8887765432 333567888898888888887763
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHh----hCCCCCChhhH--------------HHHHHHHHhcCCh
Q 011201 183 LIDGRPSVSIYNVLINGFVKCREFDK---ALGFYDRMV----RDRVKPDVVTF--------------NILISGFCRNKKF 241 (491)
Q Consensus 183 ~~~~~~~~~~~~~li~~~~~~~~~~~---A~~~~~~m~----~~~~~p~~~~~--------------~~li~~~~~~~~~ 241 (491)
.|...+|..|..+|...||+.. +.+.+..+. ..|+.--...+ ...+....-.|-+
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 4888999999999999998654 333222221 12322111111 1122223333444
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 242 DLALGLFREMREKGCNPNVVSFNTLIRGFFGER-KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
+.+++++..+...... . ++...++-+.... .+++-..+.....+ .++..+|..+++.-.-.|+++.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 5555555444332111 0 1111233333322 23333333333332 57889999999999999999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011201 321 FSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRK 380 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 380 (491)
|.+.|+..+..-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999998888777777655 78888889999999999999999999888877777554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-07 Score=81.60 Aligned_cols=294 Identities=15% Similarity=0.022 Sum_probs=206.6
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHH
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFDLA 244 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~A 244 (491)
-.++...|...+-.+....-.+.|+.....+.+++...|+.++|...|+.....+ |+ +.....-...+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH
Confidence 3455555555555444443446788999999999999999999999999876542 22 22222223345677888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 245 LGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 245 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
..+...+....- -+...|-.-........+++.|+.+-++.++.... +...|-.-...+...|+.++|.--|+.....
T Consensus 286 ~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 888877765421 14555666666677788999999998888765432 4445544456778889999999999887655
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCChHHHHHHHHHHHHCCCCCC-HH
Q 011201 325 GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLI-EGLRR-LRKGVEASGLMEKMLKEGILPD-SV 401 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~ 401 (491)
.. .+...|..|+.+|...|.+.+|.-+-++..+.- .-+..+.+.+. ..+.. -..-++|.+++++-.. +.|+ ..
T Consensus 364 ap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 364 AP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred ch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 32 256789999999999999999887766654421 11444444442 22222 2233678888887766 4566 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011201 402 TFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA 471 (491)
Q Consensus 402 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 471 (491)
..+.+...|...|..+.+..+++..... .||....+.|.+.+...+.+++|++.|...... .|+..
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~ 505 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSK 505 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccch
Confidence 5667777888899999999999987764 689999999999999999999999999988844 45443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-07 Score=86.12 Aligned_cols=218 Identities=10% Similarity=-0.053 Sum_probs=147.4
Q ss_pred CChhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 011201 168 NRMNDGLLAFEAMRKLIDGRPS--VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLAL 245 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 245 (491)
+..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777777754322232 456888888899999999999999998876533 6788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011201 246 GLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRG 325 (491)
Q Consensus 246 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 325 (491)
+.|++..+.... +..+|..+..++...|++++|++.|+...+... +..........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999876433 567888888889999999999999999887643 32222222223445678899999887655332
Q ss_pred CCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc---CCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 326 VLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK---GNL---PSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 326 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
.++... ..+. ....|+...+ +.++.+.+. .+. .....|..+...+.+.|+.++|+..|++..+.
T Consensus 196 -~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 -DKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -CccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222221 2222 2334555443 344444321 110 12346777778888888888888888888774
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-07 Score=86.69 Aligned_cols=223 Identities=12% Similarity=-0.014 Sum_probs=157.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 011201 123 YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK 202 (491)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 202 (491)
+..+.++.-+.+++..... ..+.....|......|.+.|+.++|+..|++..+.. +.+..+|+.+...+..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~-------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 40 LQQEVILARLNQILASRDL-------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQ 110 (296)
T ss_pred hHHHHHHHHHHHHHccccC-------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 4556666777777654311 112234668888889999999999999999998863 4578999999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 011201 203 CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNM 282 (491)
Q Consensus 203 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 282 (491)
.|++++|.+.|++..+.... +..+|..+...+...|++++|++.|++..+.. |+..........+...++.++|...
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHH
Confidence 99999999999999876433 56778888888999999999999999998864 3332222223334567889999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC---CCHhhHHHHHHHHHcCCCHhHHHHHHHHH
Q 011201 283 AYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR---GVL---PKDFDYFGLVEKLCGEGNAGIALEVVDEL 356 (491)
Q Consensus 283 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 356 (491)
|.+..... .++...+ .+. ....|+...+ +.+..+.+. .+. .....|..+...+.+.|++++|...|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 97765432 2232222 222 2335555443 344444322 111 12357888999999999999999999999
Q ss_pred HHcCCC
Q 011201 357 WKKGNL 362 (491)
Q Consensus 357 ~~~~~~ 362 (491)
.+.++.
T Consensus 263 l~~~~~ 268 (296)
T PRK11189 263 LANNVY 268 (296)
T ss_pred HHhCCc
Confidence 987643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-06 Score=83.51 Aligned_cols=305 Identities=10% Similarity=-0.067 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
.|..+...+...++.+.+...+.......... .+..+........+...|++++|.+.+++..+.. +.+.
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~ 77 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAAR--------ATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDL 77 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccC--------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcH
Confidence 45555666666677777666666654433210 1112334444556778999999999999988753 3444
Q ss_pred HHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 191 SIYNVLINGFV----KCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNT 265 (491)
Q Consensus 191 ~~~~~li~~~~----~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 265 (491)
..++. ...+. ..+..+.+.+.++.. ....|+ ......+...+...|++++|.+.+++..+.... +...+..
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~ 153 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHA 153 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 45542 22222 245555666665541 122233 334445667888999999999999999987543 5677888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhH-H--HHHH
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCE-FSS--VTCEILVDGLCNEGRVLKACELVIDFSRRGV-LPKDFDY-F--GLVE 338 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~ 338 (491)
+...+...|++++|..++++..+.... ++. ..|..+...+...|++++|..++++...... ....... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 899999999999999999998865322 222 3455678889999999999999999864432 1112111 1 3333
Q ss_pred HHHcCCCHhHHHHH--HHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--------CHHHHHHH
Q 011201 339 KLCGEGNAGIALEV--VDELWKKGNLPSVIAC--TTLIEGLRRLRKGVEASGLMEKMLKEGILP--------DSVTFNCL 406 (491)
Q Consensus 339 ~~~~~g~~~~a~~~--~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--------~~~~~~~l 406 (491)
-+...|....+.+. +..............+ .....++...|+.++|..+++.+....... ........
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE 313 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH
Confidence 44444543333332 1111111101011222 245667788999999999999887642220 11111222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC
Q 011201 407 LEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 407 l~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
.-++...|+.++|.+.+......
T Consensus 314 A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 314 ALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 22456889999999988776653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-06 Score=80.30 Aligned_cols=349 Identities=13% Similarity=0.092 Sum_probs=200.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHH
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIY 193 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 193 (491)
+=+......+++++|.....++...+ |+...++.+-+-++++.+++++|+.+.+.-.... .-+...
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-----------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~- 82 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-----------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFF- 82 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-----------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhh-
Confidence 34566777889999999999988764 4446778888888889999999886554433210 011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----------------
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCN---------------- 257 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~---------------- 257 (491)
---..+..+.+..++|+..++-... -|..+...-...+.+.|++++|+++|+.+.+.+..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 1112333456778888877772211 12334445556677788888888888877443211
Q ss_pred -----------CCHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHcC-------CCCCh-------hhHHHHHHHHHhcC
Q 011201 258 -----------PNVVSFNTLI---RGFFGERKFDEGVNMAYEMIELG-------CEFSS-------VTCEILVDGLCNEG 309 (491)
Q Consensus 258 -----------p~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~-------~~~~~ll~~~~~~g 309 (491)
....+|..+. ..+...|++.+|+++++...+.+ -.-+. .+-..+.-.+...|
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 0111333332 34456788888888887772211 00001 11123444556678
Q ss_pred CHHHHHHHHHHHHhCCCCCCHh----hHH-----------------------------------------------HHHH
Q 011201 310 RVLKACELVIDFSRRGVLPKDF----DYF-----------------------------------------------GLVE 338 (491)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~----~~~-----------------------------------------------~li~ 338 (491)
+.++|..++..+++.... |.. .-| .++.
T Consensus 239 qt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777665432 110 000 0111
Q ss_pred HHHcC--------------------------------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 339 KLCGE--------------------------------GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 339 ~~~~~--------------------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
.|... .....+.+++....+....-...+.-.++......|+++.|++
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 11100 1122333333333333222234455566677778889999888
Q ss_pred HHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCCHH
Q 011201 387 LME--------KMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK--GLDPDGM----TYHILVSGYTRENRRK 452 (491)
Q Consensus 387 ~~~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~----~~~~li~~~~~~g~~~ 452 (491)
++. ...+.+..|- +...+...+.+.++.+.|..++...... .-.+... ++.-+...-.+.|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 888 4444444444 4455666677777777777666655432 0011222 2333344445789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 453 EGENLVNEMLDEGFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 453 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 484 (491)
+|..+++++.+. ..+|..+...++.+|++..
T Consensus 476 ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 476 EASSLLEELVKF-NPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC
Confidence 999999999975 3578889999999998753
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.8e-06 Score=73.75 Aligned_cols=288 Identities=11% Similarity=0.015 Sum_probs=196.6
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 193 YNVLINGFVK--CREFDKALGFYDRMVRD-RVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 193 ~~~li~~~~~--~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
....+.+++. .++...|...+-.+... -+.-|+.....+.+++...|+.++|+..|++..-.+.. +........-.
T Consensus 197 ls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~L 275 (564)
T KOG1174|consen 197 LSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHH
Confidence 3334444443 34444444444433332 23446777888889999999999999999987765221 22233333445
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIA 349 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 349 (491)
+.+.|+++....+...+.... .-+...|..-.......++++.|+.+.+..++.+.. +...|-.-...+...|+.++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHH
Confidence 567888888888877776542 123333444445555678888998888887766543 344455555677788999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-HhcCChHHHHHHHHHHH
Q 011201 350 LEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLL-EDL-CDVGRTVDADRLRLLAS 427 (491)
Q Consensus 350 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~g~~~~a~~~~~~~~ 427 (491)
.-.|+......+. +...|..|+.+|...|++.+|.-+-+...+. +.-+..+...+. ..| .....-++|.++++...
T Consensus 354 ~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 9999998775433 7889999999999999999999888776664 333555555442 222 23344678888888766
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc
Q 011201 428 TKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQ 489 (491)
Q Consensus 428 ~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 489 (491)
.. .|+ ....+.+...+...|+.++++.++++... ..||....+.|.+.+.-.....+|
T Consensus 432 ~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 432 KI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred cc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHH
Confidence 54 454 34566777888999999999999999884 578999999998888777666655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-07 Score=76.11 Aligned_cols=200 Identities=12% Similarity=0.010 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
.+.-.+.-.|.+.|+...|..-+++..+.. +.+..+|..+...|.+.|..+.|.+.|+...+.... +....|.-...
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHH
Confidence 445567778889999999999999988863 456778888889999999999999999988776433 56677888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGC-NPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
+|..|++++|...|++....-. .--..+|..+.-+..+.|+.+.|.++|++..+.... ...+...+.....+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 8889999999999988877522 123567888888888889999999988888877543 34555667777777888888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK 359 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 359 (491)
|...++.....+. ++..+....|+.--..|+.+.+.+.=..+...
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888877777665 56666666666666677777666665555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-05 Score=76.83 Aligned_cols=363 Identities=12% Similarity=0.066 Sum_probs=208.3
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCCh
Q 011201 91 YDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRM 170 (491)
Q Consensus 91 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (491)
.++++++.-.+ .++..-+-.|..++..+++++|.+.+..++......+ ...+.+-..|..+.+..++.-+.
T Consensus 156 ts~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~s----k~gkSn~qlw~elcdlis~~p~~ 226 (835)
T KOG2047|consen 156 TSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVS----KKGKSNHQLWLELCDLISQNPDK 226 (835)
T ss_pred HHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhh----hcccchhhHHHHHHHHHHhCcch
Confidence 35555554433 2334467778899999999999999988876543222 12244456677776766665554
Q ss_pred hHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---------
Q 011201 171 NDGLLAFEAMRKLIDGRPS--VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK--------- 239 (491)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--------- 239 (491)
-..+.+=.-|+...+.-+| -..|++|.+.|.+.|.+++|..+|++.... ..++.-|..+.+.|+...
T Consensus 227 ~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 227 VQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred hcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4333332223322122244 356999999999999999999999987664 224444555555554221
Q ss_pred -------------ChhHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--
Q 011201 240 -------------KFDLALGLFREMREKGC-----------NPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-- 293 (491)
Q Consensus 240 -------------~~~~A~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-- 293 (491)
+++-.+.-|+.+...+. .-++..|..-+.. ..|+..+....|.+..+. +.|
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCccc
Confidence 22333444444433311 1133344433332 346677777777777654 222
Q ss_pred ----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC------
Q 011201 294 ----SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK---DFDYFGLVEKLCGEGNAGIALEVVDELWKKG------ 360 (491)
Q Consensus 294 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------ 360 (491)
-...|..+.+.|-..|+++.|..+|+...+...+.- ..+|.....+-.+..+++.|+++++.....-
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 124567778888889999999999988877654422 3455666666667778888888877664321
Q ss_pred ----CC-------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 361 ----NL-------PSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 361 ----~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
.. -+...|...++..-..|-++....+|+++++..+. ++.........+....-++++.+++++-+..
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 11 13445666666666667777777888887775433 2221111111223444456666666543332
Q ss_pred CCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 011201 430 GLDPD-GMTYHILVSGYTR---ENRRKEGENLVNEMLDEGFIPD 469 (491)
Q Consensus 430 g~~p~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~ 469 (491)
--.|+ ...|+..+.-+.+ .-+.+.|..+|++.++ |..|.
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 11233 2445554444332 2356677777777766 44444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-07 Score=75.46 Aligned_cols=184 Identities=12% Similarity=-0.025 Sum_probs=70.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
+|...|+...|.+-+++..+.... +..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHH
Confidence 344444444444444444443221 2333444444444444444444444444433221 23333334444444444444
Q ss_pred HHHHHHHHHhCCC-CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 314 ACELVIDFSRRGV-LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 314 a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
|.+.|+.....-. .--..+|..+.-+..+.|+.+.|.+.|++..+.... .......+.....+.|++-.|..+++...
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4444444333211 111122333333333444444444444443333222 12223333333344444444444444443
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 393 KEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 393 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
..+. ++....-..|+.-...|+.+.+-+
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 3322 343333333333334444444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-06 Score=78.45 Aligned_cols=175 Identities=9% Similarity=0.034 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+.+.|+.+.-.....+++++|...++.....+ +++..++.-+.-.=++.|+++.....-....+.. +
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-----------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~ 140 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-----------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--P 140 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-----------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--h
Confidence 34456666555555677777777777666543 4445566665555556666666666666655542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHH------HHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDR-VKPDVVTFNIL------ISGFCRNKKFDLALGLFREMREKGCNPNV 260 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 260 (491)
.....|..+..++.-.|+...|..++++..+.. -.|+...|.-. .....+.|..++|.+.+..-... +. |.
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dk 218 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DK 218 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HH
Confidence 234456666666666777777777777766543 13444433221 12344566666666665544332 11 22
Q ss_pred HH-HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011201 261 VS-FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCE 299 (491)
Q Consensus 261 ~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 299 (491)
.. -..-...+.+.+++++|..++..++... ||..-|.
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy 256 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYY 256 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHH
Confidence 22 2334455666677777777777776653 3444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.9e-06 Score=79.43 Aligned_cols=371 Identities=12% Similarity=0.015 Sum_probs=237.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 011201 105 FRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLI 184 (491)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (491)
+.-+...|..+.-++.+.|+|..+.+.|++....- -...+.|..+...|...|.-..|+.+++......
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-----------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-----------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS 387 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc
Confidence 55677888889889999999999999998876432 1124678888899999999999999998876653
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhC--CC--CCChhhHHHHHHHHHhc-----------CChhHHHHHH
Q 011201 185 DGRPSVSIYNVLINGFVKC-REFDKALGFYDRMVRD--RV--KPDVVTFNILISGFCRN-----------KKFDLALGLF 248 (491)
Q Consensus 185 ~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~--~~--~p~~~~~~~li~~~~~~-----------~~~~~A~~~~ 248 (491)
..++|...+-..-..|.+. +.+++++++-.+.... +. ......|-.+.-+|... ....++++.+
T Consensus 388 ~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 3234455554444555543 6677777766666551 11 12333444444444321 2245778888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC
Q 011201 249 REMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR-GVL 327 (491)
Q Consensus 249 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~ 327 (491)
++..+.+.. |......+.--|+..++++.|++...+..+.+-..+...|..+.-.+...+++.+|+.+++...+. |..
T Consensus 468 e~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 468 EEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred HHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 888776543 333333444557778899999999999998866678888998888888899999999998876533 221
Q ss_pred C------------------CHhhHHHHHHHHHc---------C--------------CCHhHHHHHHHHHH--------H
Q 011201 328 P------------------KDFDYFGLVEKLCG---------E--------------GNAGIALEVVDELW--------K 358 (491)
Q Consensus 328 ~------------------~~~~~~~li~~~~~---------~--------------g~~~~a~~~~~~m~--------~ 358 (491)
. ...|...++...-. . ++..+|.+..+.+. .
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 0 00111112111110 0 01111111111110 0
Q ss_pred cC---------C--CCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 359 KG---------N--LPS------VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 359 ~~---------~--~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
.| . .|+ ...|......+.+.+..++|..-+.+.... ..-....|......+...|..++|.+
T Consensus 627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 00 0 011 223445556666777777777666655543 22344556666566777888899988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 422 LRLLASTKGLDPDGMTYHILVSGYTRENRRKEGEN--LVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 422 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
.|....... +-++....++..++.+.|+..-|.. ++.++.+.+ .-+...|..+...+.+.|+.++|.
T Consensus 706 af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 706 AFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHH
Confidence 888777653 2246777888899999988777777 899998765 347789999999999999998874
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-06 Score=73.22 Aligned_cols=160 Identities=9% Similarity=0.123 Sum_probs=90.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNV 195 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (491)
+.-+...+++..|.++++.-...+.... ..+--.+..++...|++++|+.++..+.... .++...+-.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE----------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vn 96 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE----------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVN 96 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh----------HHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchh
Confidence 4555667888888888887654432211 1334456788889999999999999887743 456666655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC-----------CChhhH--------------HHHHHHHHhcCChhHHHHHHHH
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRVK-----------PDVVTF--------------NILISGFCRNKKFDLALGLFRE 250 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~~-----------p~~~~~--------------~~li~~~~~~~~~~~A~~~~~~ 250 (491)
|.-++.-.|.+.+|..+-....+..+. -|..-+ -+|.......-.+++|+++|..
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 665555567777777665443221000 011100 1122222223346677777776
Q ss_pred HHHcCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHc
Q 011201 251 MREKGCNPNVVSFNTL-IRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 251 m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.... .|+-...|.. .-+|.+..-++-+.++++-..+.
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 6654 2233333333 33555666667777777666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-07 Score=76.30 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=106.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI-LISGF 235 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~ 235 (491)
|...+..+.+..++++|++++..-.+.. +.+....+.|..+|....++..|-+.++++... .|...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 5567777888888999998888776642 337777888888999999999999999888664 344444432 23455
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLI--RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
.+.+.+..|+++...|.+. ++...-..-+ ....+.+++..+..++++.-..| +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6677788888887777542 1111111111 11223445545544444443222 22222233333344555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG 360 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 360 (491)
|.+-|+...+-+---....|+.-+ +..+.|+.+.|++...++.++|
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh
Confidence 555555554432222233343322 2334455555555555555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-05 Score=86.53 Aligned_cols=329 Identities=8% Similarity=-0.088 Sum_probs=189.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------CCCh--hhHHHHH
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRV------KPDV--VTFNILI 232 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~------~p~~--~~~~~li 232 (491)
.......|+++.+..+++.+.... ...+..........+...|++++|..++......-- .+.. .....+.
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 344555677777666666553210 011222223444555677888888888877644210 1111 1122233
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC---C--ChhhHHHHHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNV----VSFNTLIRGFFGERKFDEGVNMAYEMIELGCE---F--SSVTCEILVD 303 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~--~~~~~~~ll~ 303 (491)
..+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.....-. + ...++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4456788999999988887653111121 23455666677889999998888877643111 1 1233445566
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 011201 304 GLCNEGRVLKACELVIDFSRR----GVL--P-KDFDYFGLVEKLCGEGNAGIALEVVDELWKK----GNLPSVIACTTLI 372 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li 372 (491)
.+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+++.... +.......+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 777889999998888776542 211 1 1223445556667779999998888876542 1111233444455
Q ss_pred HHHHhcCChHHHHHHHHHHHHC--CCCCCHH--HH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 011201 373 EGLRRLRKGVEASGLMEKMLKE--GILPDSV--TF--NCLLEDLCDVGRTVDADRLRLLASTKGLDPD---GMTYHILVS 443 (491)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~--~~--~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~---~~~~~~li~ 443 (491)
..+...|+.++|.+.+.+.... ....... .. ...+..+...|+.+.|..++........... ...+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 6677889999998888877542 1111110 00 1112334457888888887665443211111 111345566
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCccccc
Q 011201 444 GYTRENRRKEGENLVNEMLDE----GFIPD-LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++...|+.++|...+++.... |...+ ..++..+..++.+.|+.++|.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777888888888888887653 32222 235666777788888887764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-05 Score=75.46 Aligned_cols=200 Identities=10% Similarity=0.101 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
..+.....-.+...|+-++|....+...+... .+...|+.+.-.+....++++|++.|....+.. +.
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~-----------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~d 107 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-----------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KD 107 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCc-----------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CC
Confidence 34444444445555566666555555444221 112345555555555556666666666655542 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG-CNPNVVSFNTLI 267 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~li 267 (491)
|...|.-|.-.-++.++++.....-..+.+.... ....|..+..++.-.|+...|..++++..+.. -.|+...|....
T Consensus 108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se 186 (700)
T KOG1156|consen 108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSE 186 (700)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 5555555555555555555555555554443211 33445555555555566666666666555442 134444444333
Q ss_pred HHH------HcCCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 268 RGF------FGERKFDEGVNMAYEMIELGCEFSSVTC-EILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 268 ~~~------~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
..+ .+.|..++|++.+..-... ..|...+ ..-...+.+.+++++|..++..++.+
T Consensus 187 ~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 187 LLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 322 2344555555444433222 1122222 23344555566666666666666555
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-05 Score=84.85 Aligned_cols=307 Identities=10% Similarity=-0.005 Sum_probs=198.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCC-----CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh----hh
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGR-----PS--VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV----VT 227 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~ 227 (491)
.....+...|++++|...+.......... +. ......+...+...|++++|...+++....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 34455567899999999998876532111 11 122233345566789999999999987653111121 24
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCC--C-Ch
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREK----GCN-PNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL----GCE--F-SS 295 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~ 295 (491)
.+.+...+...|++++|...+++.... |-. .-..++..+...+...|++++|...+++..+. +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 455666778899999999999887653 111 11234556677788999999999998877642 211 1 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-CHHHH--
Q 011201 296 VTCEILVDGLCNEGRVLKACELVIDFSRRG--VLP--KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP-SVIAC-- 368 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~-- 368 (491)
..+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|.+.+++........ ....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 334455566777899999999988775431 111 23344456667888999999999998875421110 11111
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHH
Q 011201 369 ---TTLIEGLRRLRKGVEASGLMEKMLKEGILPD---SVTFNCLLEDLCDVGRTVDADRLRLLASTK----GLDPD-GMT 437 (491)
Q Consensus 369 ---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~-~~~ 437 (491)
...+..+...|+.+.|.+++........... ...+..+..++...|+.++|...++..... |...+ ..+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 1122445567899999999876554221111 112345666788899999999998877553 32222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011201 438 YHILVSGYTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 438 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 465 (491)
...+..++.+.|+.++|.+.+.+..+..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6667788899999999999999998753
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-06 Score=76.73 Aligned_cols=216 Identities=10% Similarity=0.050 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR-EFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
..++..+-..+...++.++|+.+.+++.+.. +-+..+|+....++...| +++++++.++++.+...+ +..+|+...
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~ 113 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHH
Confidence 3455555555667788999999999998863 345667877777777777 679999999998887544 555676555
Q ss_pred HHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--
Q 011201 233 SGFCRNKK--FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE-- 308 (491)
Q Consensus 233 ~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-- 308 (491)
..+.+.|+ .++++++++++.+...+ |..+|+...-++...|+++++++.++++++.++. +...|+.....+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccc
Confidence 55555665 36788889888887655 7888998888888899999999999999988755 566666655554443
Q ss_pred -CCH----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 309 -GRV----LKACELVIDFSRRGVLPKDFDYFGLVEKLCGE----GNAGIALEVVDELWKKGNLPSVIACTTLIEGLR 376 (491)
Q Consensus 309 -g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 376 (491)
|.. ++.++....++..... |...|+.+...+... ++..+|.+.+.+....++. +......|+..|+
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 222 3455555555554433 455555555555542 2334455555555443322 4445555555554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=83.60 Aligned_cols=251 Identities=15% Similarity=0.100 Sum_probs=153.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKF 241 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 241 (491)
+-+.-.|++..++.-.+ .... ....+......+.+++...|+.+.++ .++.... .|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~-~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF-SPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS-TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCC-CchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 34445688888876555 2221 11223445566778888888877544 3443333 66666666665555444555
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 242 DLALGLFREMREKGCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 242 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
+.++.-+++....+... +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56655555544333332 2222233334566789999988887652 2566677788888889999999999988
Q ss_pred HHhCCCCCCHhhHHHHHHHHH----cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 321 FSRRGVLPKDFDYFGLVEKLC----GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
|.+.+ +..+...+..++. ..+.+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+..+.+.
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 87653 2334444444433 344688888888887665 345778888888888888888888888888766432
Q ss_pred CCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHC
Q 011201 397 LPDSVTFNCLLEDLCDVGRT-VDADRLRLLASTK 429 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 429 (491)
. +..+...++.+....|+. +.+.+++.++...
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 2 456666677766777776 5666777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-05 Score=72.65 Aligned_cols=362 Identities=11% Similarity=0.033 Sum_probs=192.9
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+..|..+.... ++|+..|..-..+++..|+|.+|.+--.+.++. +|.....|.-...++.-.|
T Consensus 18 ~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-----------~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL-----------NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc-----------CCchhhHHHHhHHHHHhcc
Confidence 345777777776653 347788888899999999999998877666554 3667788999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHhhC---CCCCChhhH--------------
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKAL---GFYDRMVRD---RVKPDVVTF-------------- 228 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~---~~~~~m~~~---~~~p~~~~~-------------- 228 (491)
++++|+..|.+-.+.. +.+...++.|..++.......+.. .++..+... ........|
T Consensus 85 ~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999877752 345566666666662110000000 000000000 000000111
Q ss_pred -----------------------------------------------------------------HHHHHHHHhcCChhH
Q 011201 229 -----------------------------------------------------------------NILISGFCRNKKFDL 243 (491)
Q Consensus 229 -----------------------------------------------------------------~~li~~~~~~~~~~~ 243 (491)
..+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 122233333334444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHH-------HHHHHHHhcCCHHHHHH
Q 011201 244 ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCE-------ILVDGLCNEGRVLKACE 316 (491)
Q Consensus 244 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-------~ll~~~~~~g~~~~a~~ 316 (491)
|++-++...+.. -+..-++....+|...|.+.+.........+.|-. ...-|+ .+..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 444444433332 12222333333444444444444443333333211 011111 11223333344444444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 317 LVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
.|...+.....|+.. .+....+++.+..+...-.+...-.. ...-...+.+.|++..|+..|.++++..
T Consensus 320 ~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~A~e-~r~kGne~Fk~gdy~~Av~~YteAIkr~- 388 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEKAEE-EREKGNEAFKKGDYPEAVKHYTEAIKRD- 388 (539)
T ss_pred HHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhHHHH-HHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 444433322222111 11112222222222221111111001 1111345667889999999999988875
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSY 476 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 476 (491)
+-|...|..-.-+|.+.|.+..|..=.+...+.. ++....|..-..++....++++|.+.|++..+. .|+..-+..-
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~ 465 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDG 465 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHH
Confidence 3367788888888889999888888766666652 233455655566666677888888888888855 3666555555
Q ss_pred HHHHHh
Q 011201 477 MDGLSN 482 (491)
Q Consensus 477 l~~~~~ 482 (491)
+.-|..
T Consensus 466 ~~rc~~ 471 (539)
T KOG0548|consen 466 YRRCVE 471 (539)
T ss_pred HHHHHH
Confidence 555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.2e-06 Score=71.59 Aligned_cols=291 Identities=12% Similarity=0.092 Sum_probs=198.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHH
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVS 191 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (491)
+.+++..+.+..++..|++++....+.. |.+...+..+..+|-...++..|-+.++++... .|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-----------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~ 78 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-----------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELE 78 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHH
Confidence 5677788889999999999998776543 334567888899999999999999999999876 36655
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 192 IYNVL-INGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG--FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 192 ~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
-|..- ...+.+.+.+.+|+++...|... ++...-..-+.+ ....+|+..+..++++....| +..+.+....
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 55432 35666789999999999988653 222222222222 235688888888888877432 5555556666
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CHh----
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLP-------------KDF---- 331 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~---- 331 (491)
...+.|++++|.+-|+...+-+---....|+..+..| +.|+++.|++...++.++|++- |..
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 6678999999999999887754333567788766554 5689999999999998887541 111
Q ss_pred ----hHHHHHH-------HHHcCCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 332 ----DYFGLVE-------KLCGEGNAGIALEVVDELWKK-GNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 332 ----~~~~li~-------~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
.-+.++. .+.+.|+.+.|.+.+-.|.-+ ....|++|...+.-.- ..+++.+..+-+.-+.+.+. .-
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 1223333 345678888888888877532 2334666665544322 23445555555555555432 34
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRLL 425 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~~ 425 (491)
..||..++-.||+..-++.|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 67888888889998888888887654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-07 Score=85.07 Aligned_cols=252 Identities=13% Similarity=0.051 Sum_probs=163.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 011201 200 FVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 200 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 279 (491)
+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334588888886555 222221223445566778888889877654 3443332 56666665565555444555555
Q ss_pred HHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 280 VNMAYEMIELGCEF-SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 280 ~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
+.-+++....+... +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55554443333222 2223333335666789999999888542 3455667788999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 359 KGNLPSVIACTTLIEGLRR----LRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD 434 (491)
Q Consensus 359 ~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 434 (491)
.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+..+.. +-+
T Consensus 160 ~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 ID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp CS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred cC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 64 33344445554432 33688999999998765 66788999999999999999999999999987754 346
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCC
Q 011201 435 GMTYHILVSGYTRENRR-KEGENLVNEMLDEGFIPD 469 (491)
Q Consensus 435 ~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~ 469 (491)
..+...+|.+....|+. +.+.+++.++... .|+
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~ 268 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN 268 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence 77777788887888887 7788899988754 454
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=6e-06 Score=75.58 Aligned_cols=215 Identities=12% Similarity=0.062 Sum_probs=161.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCCCC
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN-RMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~ 189 (491)
++..+-..+...++.++|+.+..+++... |....+|+.-..++.+.| ++++++..++++.+.. +.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-----------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pkn 105 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-----------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKN 105 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--Ccc
Confidence 34455566667789999999999988754 555677777777777777 5899999999998863 456
Q ss_pred HHHHHHHHHHHHhcCCH--HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREF--DKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
..+|+.....+.+.|+. ++++++++.+.+...+ |..+|+.....+.+.|+++++++.++++++.+.. |..+|+...
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 77788776666667763 6789999999887644 7888998888888999999999999999998776 778888777
Q ss_pred HHHHcC---CCH----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011201 268 RGFFGE---RKF----DEGVNMAYEMIELGCEFSSVTCEILVDGLCNE----GRVLKACELVIDFSRRGVLPKDFDYFGL 336 (491)
Q Consensus 268 ~~~~~~---g~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (491)
..+.+. |.. ++.+++..++++.... +...|+.+...+... +...+|.+.+.+..+.++. +......|
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l 261 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDL 261 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHH
Confidence 666554 222 4677777777776543 778888888877773 4456688888777665433 55667777
Q ss_pred HHHHHc
Q 011201 337 VEKLCG 342 (491)
Q Consensus 337 i~~~~~ 342 (491)
++.|+.
T Consensus 262 ~d~~~~ 267 (320)
T PLN02789 262 LDLLCE 267 (320)
T ss_pred HHHHHh
Confidence 777775
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-09 Score=60.70 Aligned_cols=32 Identities=50% Similarity=0.937 Sum_probs=16.1
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 220 RVKPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 220 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-09 Score=60.45 Aligned_cols=33 Identities=39% Similarity=0.759 Sum_probs=26.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 429 KGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 429 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
+|+.||..+|++||++||+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367788888888888888888888888888877
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7e-05 Score=75.07 Aligned_cols=203 Identities=13% Similarity=-0.000 Sum_probs=113.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011201 225 VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDG 304 (491)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 304 (491)
...|..+..+-.+.|.+.+|++-|-+.. |...|..++....+.|.+++-.+++...++..-.|... +.+|-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 4456666666666666666665554322 55566666666666666666666666655554444332 456666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 011201 305 LCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEA 384 (491)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 384 (491)
|++.++..+.++++ .-||......+.+-|...|.++.|.-+|.. +.-|.-|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 66666665554443 224555555555666666666666555543 34466666667777777766
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 385 SGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 385 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
.+--++.- +..||..+-.+|...+.+.-|. |....+.....-..-+|.-|-..|-++|.+.+++...
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 65544321 4456666655655544443221 2222223334445556666666666666666666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.00011 Score=68.94 Aligned_cols=367 Identities=11% Similarity=0.097 Sum_probs=195.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 011201 106 RHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLID 185 (491)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (491)
+-|..+|..||+-+... .++++.+.++++... .|.....|..-+..-.+.++++....+|.+....
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-----------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-- 82 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-----------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-- 82 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-----------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--
Confidence 45778899999887666 899999999998763 2555678888899999999999999999998775
Q ss_pred CCCCHHHHHHHHHHHHhc-CCHHH----HHHHHHHH-hhCCCCCCh-hhHHHHHHH---------HHhcCChhHHHHHHH
Q 011201 186 GRPSVSIYNVLINGFVKC-REFDK----ALGFYDRM-VRDRVKPDV-VTFNILISG---------FCRNKKFDLALGLFR 249 (491)
Q Consensus 186 ~~~~~~~~~~li~~~~~~-~~~~~----A~~~~~~m-~~~~~~p~~-~~~~~li~~---------~~~~~~~~~A~~~~~ 249 (491)
..+...|..-++.--+. ++... ..+.|+-. .+.|+.+-. ..|+.-+.. +....+++...++|+
T Consensus 83 -vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 83 -VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred -HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 46778787777644332 33222 22333332 233433322 234333332 333445556666666
Q ss_pred HHHHcCCCC------CHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHH--cCCCCCh-------------------
Q 011201 250 EMREKGCNP------NVVSFNTLIRGF-------FGERKFDEGVNMAYEMIE--LGCEFSS------------------- 295 (491)
Q Consensus 250 ~m~~~g~~p------~~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~--~~~~~~~------------------- 295 (491)
++...-+.- |-.+|..=|+.. -+...+..|.++++++.. .|+....
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~ 241 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK 241 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence 664321110 111111111000 011122223333222211 1111000
Q ss_pred ------------------------hhHHHHH---------------------HHHHhcCC-------HHHHHHHHHHHHh
Q 011201 296 ------------------------VTCEILV---------------------DGLCNEGR-------VLKACELVIDFSR 323 (491)
Q Consensus 296 ------------------------~~~~~ll---------------------~~~~~~g~-------~~~a~~~~~~~~~ 323 (491)
.+|...+ +.+...|+ .+++..+++....
T Consensus 242 n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 242 NWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 0111111 01111222 2233333333322
Q ss_pred CCCCCCHhhHHHHHHHHHcCC---CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C
Q 011201 324 RGVLPKDFDYFGLVEKLCGEG---NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP-D 399 (491)
Q Consensus 324 ~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~ 399 (491)
.-..-+..+|..+.+.--..- ..+.....++++......--..+|..++..-.+..-.+.|..+|.+..+.+..+ +
T Consensus 322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh 401 (656)
T KOG1914|consen 322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH 401 (656)
T ss_pred HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch
Confidence 211222222332222111111 234444455554443222223456667777777777778888888888776666 5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL--ATYNSYM 477 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll 477 (491)
...+++++.-+| .++.+-|.++|+.-.++ +.-+..--...++-+...|+-..|..+|++.+..++.||. .+|..+|
T Consensus 402 VfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 402 VFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRML 479 (656)
T ss_pred hhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHH
Confidence 667777777655 46777788887765443 2223344455667777777777788888888777655554 5777777
Q ss_pred HHHHhcCCcccc
Q 011201 478 DGLSNARKSVRQ 489 (491)
Q Consensus 478 ~~~~~~g~~~~A 489 (491)
.-=+.-|+.+.+
T Consensus 480 ~yES~vGdL~si 491 (656)
T KOG1914|consen 480 EYESNVGDLNSI 491 (656)
T ss_pred HHHHhcccHHHH
Confidence 777777776543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-06 Score=82.61 Aligned_cols=243 Identities=16% Similarity=0.036 Sum_probs=186.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
-+.+.|++.+|.-.|+..++.... +...|..|.......++-..|+..+++..+.... +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 366889999999999999988655 7889999999999999999999999999987644 67788888889999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHH-----------HHHcCCCHhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCh
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVE-----------KLCGEGNAGIALEVVDELWK-KGNLPSVIACTTLIEGLRRLRKG 381 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~-----------~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~ 381 (491)
|...++..+...++ |..+.. .+.....+....++|-++.. .+..+|......|--.|--.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999888665432 111111 11122223445555555544 45457888888898889999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011201 382 VEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVN 459 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 459 (491)
++|.+-|+..+.. +| |..+||.|...++...+.++|+..|.++++. +|+ +.+.-.|...|...|.+++|.+.|=
T Consensus 447 draiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 447 DRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999984 55 5678999999999999999999999999986 565 4555567778999999999999887
Q ss_pred HHHHC---------CCCCCHHHHHHHHHHHHhcCCcc
Q 011201 460 EMLDE---------GFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 460 ~m~~~---------~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
+.+.. +-.++..+|..|=.++.-.++.|
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 66532 11234568888888887777766
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6e-06 Score=72.92 Aligned_cols=202 Identities=8% Similarity=-0.018 Sum_probs=110.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHH
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDG-----LCNEGRVLKACELVIDFSRRGVLPKDF-DYFGL 336 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l 336 (491)
-..|+--|.+.+++.+|..+.+++.- ..|-......++.+ ........-|.+.|+..-+.+..-|.. --.++
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 34555667788888888877766531 12222222222211 111223455666666655555443322 22334
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCC
Q 011201 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNC-LLEDLCDVGR 415 (491)
Q Consensus 337 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~ 415 (491)
...+.-..++++.+-.++.+..--..-|..-| .+.++++..|.+.+|+++|-+.....++ |..+|.. +.++|.+.+.
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 44455556677777777776664333344434 3667777778888888887666544444 5555544 4456677777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011201 416 TVDADRLRLLASTKGLDPDGMTYHI-LVSGYTRENRRKEGENLVNEMLDEGFIPDLATY 473 (491)
Q Consensus 416 ~~~a~~~~~~~~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 473 (491)
.+.|+.++ .+..-+.+..+.-. +.+-|.+.+.+--|-+.|+++... .|+..-|
T Consensus 444 P~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 444 PQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred chHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 77776554 33322223333333 335666777777777777777643 3444433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.0001 Score=65.11 Aligned_cols=302 Identities=13% Similarity=0.038 Sum_probs=207.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
-..-+...+...|++..|+.-+...+... |.+-.++..-...|...|+-..|+.-+++..+. +||.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-----------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF 105 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-----------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDF 105 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccH
Confidence 34566777888899999999988887653 444455555677888899999998888888875 6775
Q ss_pred HHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------------hhhH--HHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011201 191 SIY-NVLINGFVKCREFDKALGFYDRMVRDRVKPD------------VVTF--NILISGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 191 ~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~------------~~~~--~~li~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
..- -.-...+.+.|.+++|..-|+..++....-+ ...| ...+..+...|+...|+.....+.+-.
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 442 2234667889999999999998887633111 1111 223444667789999999998888765
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H-hhH
Q 011201 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK-D-FDY 333 (491)
Q Consensus 256 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~ 333 (491)
+- |...|..-..+|...|+...|+.-++...+..-. +..++--+-..+...|+.+.++..+++.++.+..-- . ..|
T Consensus 186 ~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 186 PW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY 263 (504)
T ss_pred cc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH
Confidence 44 7778888888999999999888877776655432 455555667778888999998888888877643211 1 112
Q ss_pred HHH---------HHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H
Q 011201 334 FGL---------VEKLCGEGNAGIALEVVDELWKKGNLPSVIACT---TLIEGLRRLRKGVEASGLMEKMLKEGILPD-S 400 (491)
Q Consensus 334 ~~l---------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~ 400 (491)
..+ +......+++.++.+-.+...+.........|| .+-.++...|++.+|++...+..+ +.|| .
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv 341 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHH
Confidence 111 222345567777777777776665443333333 344556677888899998888887 4555 6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 401 VTFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 401 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
.++.--..+|.-...+|.|+.-|+...+..
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 677777777777788888888777776653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.7e-06 Score=81.06 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=78.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNA 346 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 346 (491)
|.+......|.+|+.+++.+..... -..-|..+...|+..|+++.|+++|-+.. .++--|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566677777777776665533 23445666677777777777777774421 245566777777777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 347 GIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLR 423 (491)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 423 (491)
+.|.++-++.. |.......|-+-..-+-++|++.+|.++|-... .|+. .|..|-+.|..+...++.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHH
Confidence 77777665543 233345555555555666677766666653321 1222 234455555555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.9e-05 Score=71.61 Aligned_cols=298 Identities=10% Similarity=0.034 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
.+|-.-+..+.++|++......|+..............|...+......+-++-+..++++.++. ++..-+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 56777788888999999999999988776444445677888888888889999999999998864 45557777888
Q ss_pred HHhcCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHcCCCCCh--hhHHHHHH
Q 011201 235 FCRNKKFDLALGLFREMREK------GCNPNVVSFNTLIRGFFGERKFDE---GVNMAYEMIELGCEFSS--VTCEILVD 303 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~--~~~~~ll~ 303 (491)
+++.+++++|.+.+...... ..+.+-..|..+-....+.-+.-. ...+++.+... -+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 99999999999998877543 122355566666665555444322 23334443322 2232 56788889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC----------------C------CHhHHHHHHHHHHHcCC
Q 011201 304 GLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE----------------G------NAGIALEVVDELWKKGN 361 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~m~~~~~ 361 (491)
-|.+.|.+++|..++++....-. +...|+.+.++|..- | +++-.+.-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999988776532 333344444444321 1 12333344444443321
Q ss_pred -----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHH
Q 011201 362 -----------LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD------SVTFNCLLEDLCDVGRTVDADRLRL 424 (491)
Q Consensus 362 -----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~ 424 (491)
..++..|..-+. +..|+..+-...|.+.++. +.|- ...|..+.+.|...|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 112333333332 2356777888888888775 3333 3467888889999999999999999
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 425 LASTKGLDPD---GMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 425 ~~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
...+-..+-- ..+|..-..+=.++.+++.|+++.++...
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 8877543321 34566666667788899999999888763
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4e-06 Score=78.89 Aligned_cols=255 Identities=13% Similarity=0.023 Sum_probs=177.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
..-+.+.|++.+|.-.|+...+.. +-+..+|.-|......+++-..|+..+.+..+.... |....-.|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 344667888888888888887752 457888888888888888888888888888776433 56677777778888888
Q ss_pred hhHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHhcCCH
Q 011201 241 FDLALGLFREMREKGCN--------PNVVSFNTLIRGFFGERKFDEGVNMAYEMI-ELGCEFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~g~~ 311 (491)
-..|++.+++-+....+ ++...-.. ..+.....+....++|-++. +.+..+|..+...|.-.|.-.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 88888888887553210 00000000 12223334445555665554 445557888888888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 312 LKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
++|...|+..+..... |...||.|.-.++...+.++|+..|.+..+..+.- +.+..-|.-.|...|.+++|.+.|-..
T Consensus 447 draiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999988877544 67788999999999999999999999988864332 233444566688889999998888655
Q ss_pred HH---C------CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 392 LK---E------GILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 392 ~~---~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
+. . +..++...|..|=.++.-.++.|.+.+.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 43 2 1223456777776677777777755544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.3e-06 Score=78.85 Aligned_cols=233 Identities=9% Similarity=-0.011 Sum_probs=157.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
.-..+...+...|-...|..++++. ..+..++.+|...|+..+|..+..+..+. +||.
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-------------------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~ 457 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-------------------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDP 457 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-------------------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcc
Confidence 3445566666677777777777664 45667777888888777777777666552 5777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
..|..+.+.....--+++|.++++....+ .-..+.....+.++++++.+.|+.-.+...- ...+|-.+-.+.
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~A 529 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAA 529 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHH
Confidence 77777777776666677788777764322 1111222233467888888888765554221 456777777777
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHH
Q 011201 271 FGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIAL 350 (491)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 350 (491)
.+.++++.|.+.|......... +...||.+-.+|.+.|+-.+|...+.+..+-+ .-+...|...+....+.|.+++|+
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 8888888888888887765322 56788888888888888888888888888776 335556667777778888888888
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHH
Q 011201 351 EVVDELWKKG-NLPSVIACTTLIEGL 375 (491)
Q Consensus 351 ~~~~~m~~~~-~~~~~~~~~~li~~~ 375 (491)
+.+.++.... ..-|..+...++...
T Consensus 608 ~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 608 KAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHH
Confidence 8888776521 111444444444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-05 Score=77.86 Aligned_cols=231 Identities=14% Similarity=0.029 Sum_probs=182.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
..+...+.+.|-..+|..+|+++. .|.-+|.+|+..|+..+|..+..+..+ -+||...|..+.+...+.
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 445667788899999999998654 578899999999999999999988887 367889999888888777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 309 GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLM 388 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 388 (491)
.-+++|.++.+....+ .-..+.......++++++.+.|+.-.+.+.- -..+|-.+-.+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 7788999888775443 1112222233478999999999987776432 5788888888889999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 011201 389 EKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEG-F 466 (491)
Q Consensus 389 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 466 (491)
..... ..|| ...||.+-.+|.+.|+..+|...+.+..+.. .-+...|...+....+.|.+++|++.+.++.+.. .
T Consensus 543 ~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 543 HRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 98877 4565 6789999999999999999999999999987 4567788888888999999999999999987542 1
Q ss_pred CCCHHHHHHHHHHHH
Q 011201 467 IPDLATYNSYMDGLS 481 (491)
Q Consensus 467 ~p~~~~~~~ll~~~~ 481 (491)
.-|......++....
T Consensus 620 ~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTVL 634 (777)
T ss_pred cccchhhHHHHHHHH
Confidence 125555555544443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00013 Score=73.17 Aligned_cols=320 Identities=14% Similarity=0.127 Sum_probs=176.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHH-----------HHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHH
Q 011201 108 DHTTFLFIVRSLASSYRFSELH-----------SVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLA 176 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (491)
....|....+.+.+..+.+-=. .++++.++.+.+-. .+++-....+.++...+-..+-+++
T Consensus 935 eNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~--------~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 935 ENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPET--------QDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred chhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCcc--------CChHHHHHHHHHHHhcCCcHHHHHH
Confidence 3445667777777766654322 33344444333211 2245566788999999999999999
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011201 177 FEAMRKLID-GRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 177 ~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
++++.-... ..-+...-|.|+-...+. +...+.+..+++-.-. .|+ +...+...+-+++|+.+|++...
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~-- 1076 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDM-- 1076 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcc--
Confidence 999875311 112333445555444443 3455666666654321 112 23334555667777777776432
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011201 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFG 335 (491)
Q Consensus 256 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (491)
+....+.||.- -+.++.|.++-++.. ...+|+.+..+-.+.|.+.+|.+-|-.. -|...|..
T Consensus 1077 ---n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1077 ---NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred ---cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 44444444442 244555554444332 2356666666666666666665544221 13345666
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGR 415 (491)
Q Consensus 336 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 415 (491)
+++...+.|.+++..+.+...+++.-.|.+. +.||-+|++.++..+.++++ .-||......+.+-|...|.
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhh
Confidence 6666667777776666666655554443332 45666666666665554443 23555555666666666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 011201 416 TVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 416 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
++.|.-++. ++.-|..|...+...|.++.|....++.- +..||..+-.+|...+.+.
T Consensus 1210 y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1210 YEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred hHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhh
Confidence 666655543 33445555555555666666555544441 4455555555555554443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-05 Score=82.85 Aligned_cols=229 Identities=11% Similarity=-0.001 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRD-RVKPD---VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNT 265 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 265 (491)
...|-..|......++.++|.+++++.+.. ++.-. .-.|.++++.-..-|.-+...++|+++.+.. . .-..|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHHH
Confidence 344555555555555555555555554432 11111 1234444444444445555555555555431 0 1233445
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHcCC
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLP-KDFDYFGLVEKLCGEG 344 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 344 (491)
|...|.+.+..++|.++++.|.+.- .-...+|...+..+.+..+-+.|..++.+.++.=.+- ........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 5555555555555555555555431 1234455555555555555555555555554432110 1223344444455566
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD--SVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
+.+.+..+|+.....-++ -...|+..|+.-.++|+.+.+..+|++.+..++.|- ...|...+..=-+.|+-..++.+
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 666666666666554333 345566666666666666666666666666655543 23455555443444554444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00013 Score=69.13 Aligned_cols=194 Identities=13% Similarity=0.097 Sum_probs=126.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.=++.+...|++++|+....++.... +.+..++..-+-++++.+++++|+.+.+.-.. ...+..-+--=..+..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHc
Confidence 44677888999999999999999853 56777888888899999999999976654221 011111111123345578
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC------------------------
Q 011201 239 KKFDLALGLFREMREKGCNPN-VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF------------------------ 293 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------------------------ 293 (491)
+..|+|+..++ |..++ ..+...-...+.+.|++++|+++|+.+.+++..-
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 99999999998 33333 3366666778899999999999999996654321
Q ss_pred ---ChhhHHHHH---HHHHhcCCHHHHHHHHHHHHhCC-------CCCCHh-------hHHHHHHHHHcCCCHhHHHHHH
Q 011201 294 ---SSVTCEILV---DGLCNEGRVLKACELVIDFSRRG-------VLPKDF-------DYFGLVEKLCGEGNAGIALEVV 353 (491)
Q Consensus 294 ---~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~li~~~~~~g~~~~a~~~~ 353 (491)
...+|..+. ..+...|++.+|+++++...+.+ -.-+.. +-..+...+-..|+.++|.+++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 112333333 23445678888888877763221 111111 1223445555678888888888
Q ss_pred HHHHHcCC
Q 011201 354 DELWKKGN 361 (491)
Q Consensus 354 ~~m~~~~~ 361 (491)
..+.....
T Consensus 248 ~~~i~~~~ 255 (652)
T KOG2376|consen 248 VDIIKRNP 255 (652)
T ss_pred HHHHHhcC
Confidence 77776543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0002 Score=63.42 Aligned_cols=302 Identities=13% Similarity=0.059 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH-HHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN-ILI 232 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li 232 (491)
+.-.--+.+.+...|++.+|+.-|....+. .+.+-.++-.-...|...|+-..|+.-+.+.++. +||-..-. .-.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 344456678888999999999999998873 2233344444456788889988898888888775 56643221 223
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC--CHHH----------H--HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNP--NVVS----------F--NTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTC 298 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~----------~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 298 (491)
..+.+.|.+++|..-|+...+....- .... | ...+..+.-.|+...|++....+.+.. ..|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 45779999999999999998763311 1111 1 223455667899999999999999874 4588889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHH----HHHHH---
Q 011201 299 EILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVI----ACTTL--- 371 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~l--- 371 (491)
..-..+|...|++..|+.=+....+..-. +...+..+-..+...|+.+.++...++..+.+ ||.. .|..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHH
Confidence 99999999999999998887777665443 44456667777888999999999999888754 3322 12211
Q ss_pred ------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 372 ------IEGLRRLRKGVEASGLMEKMLKEGILPDSVT---FNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILV 442 (491)
Q Consensus 372 ------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 442 (491)
+......+++.++++-.+...+......... +..+-.++...|++.+|++.-.++.+.. +.|+.++.--.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 1234566778888888888777533322333 3445556677789999999888888752 23478887778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 011201 443 SGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.+|.-...+++|+.=|+...+.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhc
Confidence 8888888888888888887754
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-05 Score=81.30 Aligned_cols=225 Identities=9% Similarity=0.047 Sum_probs=118.3
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011201 104 SFRH-DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRK 182 (491)
Q Consensus 104 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (491)
++.| +...+..|+..+...+++++|..+++...+.. |.....|..+...+.+.++.+++..+ .+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-----------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~ 91 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-----------KKSISALYISGILSLSRRPLNDSNLL--NLID 91 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----------CcceehHHHHHHHHHhhcchhhhhhh--hhhh
Confidence 3444 45678899999999999999999999776643 33344555555577777777766555 3322
Q ss_pred hcCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 011201 183 LIDGR-----------------PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLAL 245 (491)
Q Consensus 183 ~~~~~-----------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 245 (491)
..... -+-.++..+..+|-+.|+.++|..+++++.+.... |+...|.+...|+.. ++++|.
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHH
Confidence 21100 01133344444444445555555555554444322 444444444444444 445554
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 011201 246 GLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR- 324 (491)
Q Consensus 246 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 324 (491)
+++.+.... +...+++.++.++|.++..... .+++.-.++.+.+...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHHHHHHHhhh
Confidence 444444332 2233333444444444433221 1222222333333322
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 325 GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLR 376 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 376 (491)
|..--..++-.+-..|-+.++++++.++++.+.+.... |.....-++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22222334555566677777788888888887776544 5555666666665
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00054 Score=67.16 Aligned_cols=342 Identities=16% Similarity=0.085 Sum_probs=224.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH-HcCChhHHHHHHHHHHHhcCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV-KANRMNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~ 186 (491)
....|..+...+...|.-..|+.+++........ |.....+-..-..|. +.+.+++++++-.++....+.
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~---------ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~ 426 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ---------PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG 426 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccC---------CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh
Confidence 4456788888888889888999999876654322 211233333334444 467788887777776653222
Q ss_pred ---CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 187 ---RPSVSIYNVLINGFVKC-----------REFDKALGFYDRMVRDRV-KPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 187 ---~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
......|..+.-+|... ....++++.+++..+.+. .|++..| +.--|+..++++.|.+...+.
T Consensus 427 ~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~ea 504 (799)
T KOG4162|consen 427 QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREA 504 (799)
T ss_pred hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHH
Confidence 12345566666665432 124667788888877643 3433333 444577788999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCC------------------ChhhHHHHHHHHHh-----
Q 011201 252 REKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL-GCEF------------------SSVTCEILVDGLCN----- 307 (491)
Q Consensus 252 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~------------------~~~~~~~ll~~~~~----- 307 (491)
.+.+-.-+...|..+.-.+.-.+++.+|+.+.+...+. |... -..|+..++..+-.
T Consensus 505 L~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q 584 (799)
T KOG4162|consen 505 LALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ 584 (799)
T ss_pred HHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh
Confidence 98866668999999999999999999999998876543 2200 01222222222210
Q ss_pred -cCC-----------------HHHHHHHHHHH--------HhCC---------C--CCC------HhhHHHHHHHHHcCC
Q 011201 308 -EGR-----------------VLKACELVIDF--------SRRG---------V--LPK------DFDYFGLVEKLCGEG 344 (491)
Q Consensus 308 -~g~-----------------~~~a~~~~~~~--------~~~~---------~--~~~------~~~~~~li~~~~~~g 344 (491)
.++ ..++.+....+ ...| . .++ ...|......+.+.+
T Consensus 585 ~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~ 664 (799)
T KOG4162|consen 585 QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG 664 (799)
T ss_pred hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 000 00111100000 0001 0 011 113445566677788
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHH--
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADR-- 421 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~-- 421 (491)
..++|...+.+...... .....|......+...|..++|.+.|..... +.|+ .....++..++.+.|+..-|..
T Consensus 665 ~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 665 NDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRS 741 (799)
T ss_pred CchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHH
Confidence 88888877777766532 2556666666777888999999999988877 4555 5678888899999998888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 422 LRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 422 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
++..+.+.+ +.+...|-.+...+-+.|+.++|.+.|....+.
T Consensus 742 ~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 742 LLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 899998876 457899999999999999999999999988754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.1e-06 Score=72.05 Aligned_cols=187 Identities=12% Similarity=0.045 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hhHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV--VTFNI 230 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ 230 (491)
...+......+.+.|++++|+..|+++.+.....+. ..++..+..++.+.|++++|...++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 466778888899999999999999999876421121 246788889999999999999999999876432111 13445
Q ss_pred HHHHHHhc--------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011201 231 LISGFCRN--------KKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILV 302 (491)
Q Consensus 231 li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 302 (491)
+..++.+. |+.++|.+.|+++.+.... +...+..+..... ... ... .....+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~~~a 173 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKELYVA 173 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHHHHH
Confidence 55555544 7788999999998876332 2223322211110 000 000 1112455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011201 303 DGLCNEGRVLKACELVIDFSRRGV--LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK 359 (491)
Q Consensus 303 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 359 (491)
..+.+.|++++|...++...+... ......+..+..++.+.|+.++|...++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667888999999998888876632 123457788888899999999999988887665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00017 Score=70.89 Aligned_cols=166 Identities=15% Similarity=0.199 Sum_probs=97.7
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011201 118 SLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLI 197 (491)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 197 (491)
.....|.+++|..++++..+ |..+=..|-..|.+++|+++-+.-.+. .=..+|..-.
T Consensus 809 LAieLgMlEeA~~lYr~ckR-------------------~DLlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA 865 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR-------------------YDLLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYA 865 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH-------------------HHHHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHH
Confidence 34456888888888877643 555666677788888887775543221 1123344444
Q ss_pred HHHHhcCCHHHHHHHHHHH----------hhCC---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011201 198 NGFVKCREFDKALGFYDRM----------VRDR---------VKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 198 ~~~~~~~~~~~A~~~~~~m----------~~~~---------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 258 (491)
..+-..++.+.|++.|++- .... -..|...|......+-..|+.+.|+.+|....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 4445556666666665532 1110 012445555556656667888888888876554
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 259 NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
|-.+++..|-.|+.++|-++-++- | |....-.+.+.|-+.|++.+|..+|...
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455666666666666666554442 2 4455555666666666666666666543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-05 Score=78.56 Aligned_cols=171 Identities=13% Similarity=0.041 Sum_probs=106.0
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|....++..++..+...+++++|.++.+...+.... ....|-.+...+...++.+++.-+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 556788999999999999999999999987776422 233333344466677776555554 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
++.......++.-+..+...|.+.+- +...+..+..+|-+.|+.+++..+|+++.+.. .-|..+.|.+...|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 22223333334333333444444322 44466677777777777777777777777766 33666777777777777 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011201 311 VLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK 359 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 359 (491)
.++|++++...... +...+++..+.++|.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 77777776655443 33344555555555555543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-05 Score=78.76 Aligned_cols=230 Identities=9% Similarity=-0.060 Sum_probs=161.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhH
Q 011201 224 DVVTFNILISGFCRNKKFDLALGLFREMREKGCNP-----NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTC 298 (491)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 298 (491)
....|-.-|......++.++|.+++++.... +.+ -...|.++++.-..-|.-+...++|+++.+.- . .-.+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHH
Confidence 3456777777788888888888888887654 211 12356666666666677778888888887653 1 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh
Q 011201 299 EILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNL-PSVIACTTLIEGLRR 377 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 377 (491)
..|...|.+.+.+++|.++++.|.++-- -...+|...+..+.+.++-+.|..++.+..+.-.+ -......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 7888888888888888888888887633 35567888888888888888888888887664222 123344445555567
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 011201 378 LRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDG--MTYHILVSGYTRENRRKEGE 455 (491)
Q Consensus 378 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~ 455 (491)
.|+.+.+..+|+.....- .--...|+..++.-.++|+.+.++.+|+++...++.+.. ..|...+..=-+.|+-+.+.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 888888888888887752 225667888888888888888888888888888776643 34555555445556655444
Q ss_pred HHH
Q 011201 456 NLV 458 (491)
Q Consensus 456 ~~~ 458 (491)
.+=
T Consensus 1692 ~VK 1694 (1710)
T KOG1070|consen 1692 YVK 1694 (1710)
T ss_pred HHH
Confidence 443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-05 Score=76.52 Aligned_cols=241 Identities=12% Similarity=0.123 Sum_probs=160.6
Q ss_pred HHHHHHHHH--HHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 011201 109 HTTFLFIVR--SLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 109 ~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (491)
..|-..+++ .|...|+.+.|..-++.+... .+|..+.+.|++..+++-|.-.+..|....|.
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~----------------~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD----------------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHhhh----------------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 334444443 355668888888887776543 57889999999999888887776666543221
Q ss_pred --------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011201 187 --------RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 187 --------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 258 (491)
.++ ..=....-.....|.+++|+.+|++-++ |..|=..|-..|.|++|+++-+.=.+-.
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--- 856 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH--- 856 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---
Confidence 122 1112223334567999999999998765 4455567778899999999876432221
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHH----------HcC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 259 NVVSFNTLIRGFFGERKFDEGVNMAYEMI----------ELG---------CEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------~~~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
=..||.....-+-..++.+.|+++|++.. ... -..|...|......+-..|+.+.|+.++.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 23567777777777888888888887532 111 11233444545555555677777777776
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
.... |..+++..|-.|+.++|-++-++ .| |......+.+.|...|++.+|..+|.+...
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5433 66777888888888888877664 33 566666788889999999999999877643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-05 Score=69.22 Aligned_cols=191 Identities=10% Similarity=0.026 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 011201 106 RHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLID 185 (491)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (491)
......+..+...+.+.|++++|...++++...... .+....++..+..++.+.|++++|+..++++.+...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF--------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 345667788888999999999999999998775421 122345777889999999999999999999988643
Q ss_pred CCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011201 186 GRPSV-SIYNVLINGFVKC--------REFDKALGFYDRMVRDRVKPDV-VTFNILISGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 186 ~~~~~-~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
..+.. .++..+..++.+. |+.++|.+.|+.+.... |+. ..+..+.... . .. ...
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~~------~~~---- 165 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---LR------NRL---- 165 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---HH------HHH----
Confidence 22322 2455566666654 78899999999988763 332 2222221110 0 00 000
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 256 CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGC--EFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 256 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
......+...+.+.|++++|+..++...+... ......+..+..++.+.|++++|..+++.+...
T Consensus 166 ----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 ----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01122455678888999999988888876632 123567778888888899999998888877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.2e-05 Score=64.22 Aligned_cols=258 Identities=12% Similarity=0.053 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
|+...|+. +-+.-.|.+..++..-....... -+...-..+-++|.-.|.+..... ++.. |-.|.......+.
T Consensus 8 ~~d~LF~i--Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a 79 (299)
T KOG3081|consen 8 PEDELFNI--RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLA 79 (299)
T ss_pred cchhHHHH--HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHH
Confidence 44444553 33333477877777665543331 244444456677777777655433 2222 2244455555555
Q ss_pred HHHHcCCCHHHHHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCH
Q 011201 268 RGFFGERKFDEGVN-MAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNA 346 (491)
Q Consensus 268 ~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 346 (491)
......++.++-+. +.+.+......-+......-...|+..|++++|++...... +......=+..+.+..++
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHH
Confidence 55555555554443 44444444333333444444567888999999988876521 222334445666778889
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 347 GIALEVVDELWKKGNLPSVIACTTLIEGLRR----LRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
+-|.+.+++|.+.. +..+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..+
T Consensus 154 d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 99999999998864 67777777777764 34677899999998775 678889999998888999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 011201 423 RLLASTKGLDPDGMTYHILVSGYTRENRR-KEGENLVNEMLDE 464 (491)
Q Consensus 423 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 464 (491)
++...++.. .+..+...+|.+-...|.. +-..+.+.+++..
T Consensus 230 L~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 230 LEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 998887643 3566666666555555555 4455566777644
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-05 Score=66.22 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=97.0
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH-HhcCC--hh
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF-CRNKK--FD 242 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~~--~~ 242 (491)
..++.++++..++...+.. +.|...|..|...|...|++++|...|++..+.... +...+..+..++ ...|+ .+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcH
Confidence 3566677877888777753 568888999999999999999999999988876533 667777777764 66676 48
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
+|.+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+..
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999887655 77888888889999999999999999988765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4e-05 Score=65.35 Aligned_cols=119 Identities=13% Similarity=0.013 Sum_probs=77.1
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hHHH
Q 011201 343 EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDL-CDVGR--TVDA 419 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~--~~~a 419 (491)
.++.+++...++...+.+.. +...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666665433 6667777777777777777777777777764321 455555555543 45555 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 420 DRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 420 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.+++++..+.. +-+...+..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777654 235666677777777777777777777777654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-05 Score=67.61 Aligned_cols=165 Identities=14% Similarity=0.091 Sum_probs=110.0
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|.+..+ ..+-..+...|+-+....+....... ...|....+..+....+.|++.+|...|++..... .+|...|+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~ 139 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL 139 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence 333444 55566666677777776666665442 23455666667777777788888887777775543 447777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
+.-+|.+.|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCC
Confidence 777777777777777777777765333 4556667777777777777777777777665433 55566666666777777
Q ss_pred HHHHHHHHHHH
Q 011201 311 VLKACELVIDF 321 (491)
Q Consensus 311 ~~~a~~~~~~~ 321 (491)
+++|..+...-
T Consensus 218 ~~~A~~i~~~e 228 (257)
T COG5010 218 FREAEDIAVQE 228 (257)
T ss_pred hHHHHhhcccc
Confidence 77777766443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.2e-05 Score=72.49 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=112.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
.+.+.....+|.+|+.+++.+.++.. -..-|..+...|...|+++.|.++|-+. ..++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 34455667788888888888877632 2334667778889999999998888763 234567888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 311 VLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEK 390 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 390 (491)
++.|.++-++. .|.......|.+-..-+-+.|++.+|.+++-.+.. |+ ..|..|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 99998886654 34455566677777777788888888877654422 22 346677788888877777665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 391 MLKEGILPDSVTFNCLLEDLCDVGRTVDADRLR 423 (491)
Q Consensus 391 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 423 (491)
-.-.. -..|-..+..-|...|++..|..-|
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 43221 1234444555566667776666544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-05 Score=66.23 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=129.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHH
Q 011201 113 LFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSI 192 (491)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 192 (491)
..+-..+...|+-+....+....... .+......+..+....+.|++.+|+..|.+.... .++|...
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-----------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~ 136 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-----------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEA 136 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-----------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhh
Confidence 44556666667766666666554322 2344567777899999999999999999999885 3789999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 272 (491)
||.+.-+|.+.|++++|..-|.+..+.... +...+|.|...+.-.|+.+.|..++......+.. |...-..+......
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~ 214 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGL 214 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhh
Confidence 999999999999999999999998876333 5667788888888999999999999998887554 77788889999999
Q ss_pred CCCHHHHHHHHHHHH
Q 011201 273 ERKFDEGVNMAYEMI 287 (491)
Q Consensus 273 ~g~~~~a~~~~~~m~ 287 (491)
.|++++|.++...-.
T Consensus 215 ~g~~~~A~~i~~~e~ 229 (257)
T COG5010 215 QGDFREAEDIAVQEL 229 (257)
T ss_pred cCChHHHHhhccccc
Confidence 999999998876644
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00023 Score=71.58 Aligned_cols=163 Identities=9% Similarity=0.063 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
.|..+...|+...+..+|...|++..+.. +........+...|++..+++.|..+.-..-+......-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-----------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-----------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 67777777777777777777777776543 3334566677777888888888777633222211000112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNT--LIR 268 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~--li~ 268 (491)
..|....-.|.+.++...|..-|+...+..+. |...|..+..+|.++|++..|+++|.+.... .|+ .+|.. ...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~ 638 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAV 638 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHH
Confidence 22334445566677777777777777665443 6778888888888888888888888887765 222 22222 222
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 011201 269 GFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~ 288 (491)
.-+..|.+.+++..+.....
T Consensus 639 ~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34567788888777776543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0003 Score=66.02 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=71.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCC
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKK 240 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 240 (491)
++.+..|+++.|+..|.+..... ++|-..|..-..+|+..|++++|++=-.+-++. .|+ ...|+-...++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 44567788888888888877753 457777888888888888888887766555443 343 3467777777777788
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
+++|+.-|.+-.+.... |...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 88888888876665322 455555555555
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00029 Score=71.43 Aligned_cols=181 Identities=6% Similarity=-0.016 Sum_probs=128.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 292 EFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTL 371 (491)
Q Consensus 292 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 371 (491)
..+...+..|.....+.|.+++|+.+++...+.... +......+...+.+.+++++|+...++....... +....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 345778888888888889999999999888877544 4556777888888888999999888888887655 67777778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRR 451 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 451 (491)
..++.+.|++++|..+|+++...+ .-+..++..+..++...|+.++|...|+...+.. .+...-|+.++ ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 888888899999999998888742 2246778888888888899999988888887752 34555555443 334
Q ss_pred HHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHh
Q 011201 452 KEGENLVNEMLDE----GFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 452 ~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~ 482 (491)
..-..+++++.-. |...........|.-+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 4445556655433 222233444445444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00057 Score=58.53 Aligned_cols=251 Identities=12% Similarity=0.104 Sum_probs=164.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
++-+.-.|++..++..-+..... +.+...-..+-++|...|.+.....- +.... .|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcch
Confidence 45555678888887766655543 23444444566777777776544333 22222 3333333333333333444
Q ss_pred hhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 241 FDL-ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 241 ~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
.++ -.++.+.+......-+......-...|+..|++++|++...... +......=+..+.+..+++.|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34555666655444344444445567899999999999887721 23334444455667889999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCG----EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 395 (491)
.|.+-+ +..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...+.
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 998764 55677766666654 46799999999999875 46789999999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHHC
Q 011201 396 ILPDSVTFNCLLEDLCDVGRTVDA-DRLRLLASTK 429 (491)
Q Consensus 396 ~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 429 (491)
.. +..+...++.+-...|.-.++ .+.+..++..
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 44 667776666665666665444 4455555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0032 Score=63.05 Aligned_cols=226 Identities=15% Similarity=0.154 Sum_probs=142.1
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDL 243 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 243 (491)
....+++.+|+.-.+++.+..+..+-..++.++ ...+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 346677888888888877764222222233333 245778888888888877666555 78888888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------CHHH
Q 011201 244 ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG----------RVLK 313 (491)
Q Consensus 244 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----------~~~~ 313 (491)
|..+|+..... .|+......+..+|.+.+.+.+-.+.--+|-+. ..-+...+=.+++.+.+.- -..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999888765 556777777778888888776555444444432 2223344444444443321 1233
Q ss_pred HHHHHHHHHhCC-CCCCHhhHHHHHHHHHcCCCHhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 314 ACELVIDFSRRG-VLPKDFDYFGLVEKLCGEGNAGIALEVVD-ELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 314 a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
|.+.++.+.+.+ ..-+..-.......+...|++++|.+++. ...+.-..-+...-+--+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555666666554 22222222333344556777888888883 3444433334555556667777888888888888888
Q ss_pred HHCC
Q 011201 392 LKEG 395 (491)
Q Consensus 392 ~~~~ 395 (491)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00026 Score=71.70 Aligned_cols=239 Identities=13% Similarity=0.088 Sum_probs=162.4
Q ss_pred CchHHHHHHH-HHHHHHcCChhHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH
Q 011201 151 PEMERIFHFA-VNAFVKANRMNDG-LLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 151 ~~~~~~~~~l-~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 228 (491)
|.+-.+.-.+ =.+....|.-++| .+++.+..+ ++.....-....+++.-....... ...++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 89 (694)
T PRK15179 24 PASGPTILDLLEAALAEPGESEEAGRELLQQARQ-------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQ 89 (694)
T ss_pred CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHH
Confidence 3333333333 3445566777766 344444433 333333333333333322222222 33468889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
-.|.....+.|++++|..+++...+.... +...+..+..++.+.+++++|+..+++....... +......+..++.+.
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999999999999987433 5667888999999999999999999999987644 667777888899999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 309 GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLM 388 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 388 (491)
|++++|..+|+++...+. -+..++..+...+.+.|+.++|...|+...+.. .+....|+..+. +...-..++
T Consensus 168 g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~ 239 (694)
T PRK15179 168 GQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAAL 239 (694)
T ss_pred cchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHH
Confidence 999999999999998543 357788999999999999999999999988753 234566665543 344455566
Q ss_pred HHHHHCC----CCCCHHHHHHHHHHHHhc
Q 011201 389 EKMLKEG----ILPDSVTFNCLLEDLCDV 413 (491)
Q Consensus 389 ~~m~~~~----~~p~~~~~~~ll~~~~~~ 413 (491)
+++.-.+ ...........|.-|.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 240 RRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 6554442 222334445555555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.001 Score=61.99 Aligned_cols=209 Identities=12% Similarity=0.045 Sum_probs=135.3
Q ss_pred ChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011201 240 KFDLALGLFREMREK--GCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 317 (491)
++.++...-++|... .-.|+...+...+.+......-..+..++.+..+. .-...-|...+ .+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 344444444444432 12345555666666555444433333333333221 11223333333 34567888899998
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011201 318 VIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGIL 397 (491)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 397 (491)
++.+.+... -|........+.+.+.|+.++|.+.++.+....+. ....+-.+..+|.+.|+..+|+.+++..... .+
T Consensus 329 l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p 405 (484)
T COG4783 329 LQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DP 405 (484)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CC
Confidence 888776643 36666777788888899999999999988886533 2566667778888899999999998888776 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011201 398 PDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATY 473 (491)
Q Consensus 398 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 473 (491)
-|...|..|.++|...|+..++..-. ..+|...|++++|...+....+. ++.+..+|
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 47888899999998888877776543 23456678888888888877765 23344443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.2e-05 Score=61.62 Aligned_cols=115 Identities=5% Similarity=-0.194 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 351 EVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 351 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
.++++..+. ++..+..+...+...|++++|...|+...... ..+...|..+..++...|++++|...|+...+..
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344554444 23335556667778888888888888887753 2256677777778888888888888888888754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011201 431 LDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATY 473 (491)
Q Consensus 431 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 473 (491)
+.+...+..+..++.+.|++++|.+.|+..++. .|+...+
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~ 128 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASW 128 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 346777888888888888888888888888754 4554433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.4e-05 Score=60.53 Aligned_cols=93 Identities=12% Similarity=0.011 Sum_probs=57.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.....+.+.|++++|...|+...... +.+..+|..+..++.+.|++++|...|+....... .+...+..+..++.+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 34555566666666666666665542 34566666666666666666666666666665432 2555566666666666
Q ss_pred CChhHHHHHHHHHHHc
Q 011201 239 KKFDLALGLFREMREK 254 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~ 254 (491)
|++++|.+.|+...+.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-06 Score=50.80 Aligned_cols=33 Identities=39% Similarity=0.716 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEMLDEGFIPD 469 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 469 (491)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999998887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00073 Score=62.96 Aligned_cols=243 Identities=14% Similarity=0.054 Sum_probs=138.6
Q ss_pred HHHHHHHHcCChhH-HHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCChhhHHHHHH
Q 011201 159 FAVNAFVKANRMND-GLLAFEAMRK--LIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDR--VKPDVVTFNILIS 233 (491)
Q Consensus 159 ~l~~~~~~~~~~~~-a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~ 233 (491)
.-+..+.+.|---. -.+.|+++.. ..+..|... ++..=.-..++.++...-+.|...+ -.|+...+...+.
T Consensus 207 ~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~ 282 (484)
T COG4783 207 IGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIR 282 (484)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHH
Confidence 34566667775444 3577777764 223333322 2222222344555555555554321 1344444555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
+......-..+..++.+-.+. --...+......+...|++++|+..++.+.+.-. -|..........+.+.++..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~ 358 (484)
T COG4783 283 AKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKE 358 (484)
T ss_pred HHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHH
Confidence 444333333333333332221 1222333334445567777777777777776532 244555556677777777778
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
|.+.++.+....... ......+.++|.+.|+..+|+.+++........ |...|..|..+|...|+..++..-..++.
T Consensus 359 A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~- 435 (484)
T COG4783 359 AIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGY- 435 (484)
T ss_pred HHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHH-
Confidence 877777777664332 445566677777778888777777777665443 77778888888888887777776665543
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 394 EGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 394 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
...|++++|...+....+.
T Consensus 436 -----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 436 -----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HhCCCHHHHHHHHHHHHHh
Confidence 3356677777666666554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00011 Score=68.83 Aligned_cols=126 Identities=14% Similarity=0.228 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
.....++..+...++++.|+.+|+++.+. .|++. -.++..+...++-.+|.+++++..+.. +-+......-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44556677777788889999999888875 25543 457777878888888888888877653 2255666666777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
+.+.++.+.|+++.+++.+.... +..+|..|..+|.+.|++++|+..++.+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888898888888876332 45688888888888899888888777653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-06 Score=50.58 Aligned_cols=31 Identities=45% Similarity=0.926 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNP 258 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 258 (491)
||.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-06 Score=49.53 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011201 436 MTYHILVSGYTRENRRKEGENLVNEMLDEGFIP 468 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 468 (491)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0015 Score=65.91 Aligned_cols=167 Identities=8% Similarity=0.041 Sum_probs=125.8
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CChhhHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PDVVTFN 229 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~ 229 (491)
+.....|..+...|+...+...|.+.|++..+.. .-+..++....+.|++..+++.|..+.-..-+.... --...|.
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 4456789999999999889999999999998863 457888999999999999999999984433322110 0112222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHh
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEI--LVDGLCN 307 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--ll~~~~~ 307 (491)
-..-.|.+.++...|+.-|+...+..++ |...|..+..+|.+.|++..|+++|.+..... |+ .+|.. ..-.-|.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECD 642 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHH
Confidence 3334577889999999999998887665 88899999999999999999999999887654 32 23322 2334577
Q ss_pred cCCHHHHHHHHHHHHh
Q 011201 308 EGRVLKACELVIDFSR 323 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~ 323 (491)
.|.+.++...++.+..
T Consensus 643 ~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIY 658 (1238)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8999999998887754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.7e-05 Score=58.97 Aligned_cols=108 Identities=12% Similarity=-0.017 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 365 VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSG 444 (491)
Q Consensus 365 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 444 (491)
......+...+...|++++|.+.|+++...+ ..+...+..+...+...|++++|..+++...+.. +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444555566667777777777777776643 2255666666777777777777777777766653 3356666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 445 YTRENRRKEGENLVNEMLDEGFIPDLATYNSY 476 (491)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 476 (491)
|...|++++|.+.|++..+. .|+...+..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 77777777777777777744 4555554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.1e-06 Score=48.99 Aligned_cols=31 Identities=39% Similarity=0.625 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGCN 257 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 257 (491)
+|+.+|.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.003 Score=53.88 Aligned_cols=189 Identities=15% Similarity=0.000 Sum_probs=130.8
Q ss_pred hcCChhHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011201 237 RNKKFDLALGLFREMREK---G-CNPNVV-SFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 311 (491)
...+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++...- +-+..+-..-.-.+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 345778888888887653 4 555554 35566777778889999999999887653 21222222222233456889
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 312 LKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
++|+++++.+++.+. .|..++..-+-..-..|+--+|++-+.+..+.-+ .|...|..+...|...|++++|.--++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999888773 3666777666667777777788888877777633 48889999999999999999999888888
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcC---ChHHHHHHHHHHHHCC
Q 011201 392 LKEGILPDS-VTFNCLLEDLCDVG---RTVDADRLRLLASTKG 430 (491)
Q Consensus 392 ~~~~~~p~~-~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g 430 (491)
+-. .|.. ..+..+...+.-.| +++.+.+++....+..
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 874 4544 44455555444443 4566777888777753
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00013 Score=58.14 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
.......+...+.+.|++++|.+.|+.+.... +.+...|..+...+.+.|++++|...++...+.+ +.+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 34455566666777777777777777776642 3456667777777777777777777777765553 22455566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 011201 233 SGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
..+...|++++|.+.|++..+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6777777777777777766664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0003 Score=65.98 Aligned_cols=123 Identities=14% Similarity=0.033 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011201 264 NTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE 343 (491)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 343 (491)
..|+..+...++++.|+++++++.+.. | .....++..+...++-.+|.+++.+..+.... +..........+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 345555556667777777777776654 2 23344566666666667777777766654332 444455556667777
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 344 GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
++.+.|.++.+++.+..+. +..+|..|..+|.+.|++++|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777765433 55677778888888888888877776654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00034 Score=56.53 Aligned_cols=126 Identities=17% Similarity=0.108 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPS--VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD--SVTFNCLLE 408 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~ 408 (491)
|..++..+ ..++...+.+.++.+......-. ....-.+...+...|++++|...|+........++ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444444 36677777777777776543211 22233344667777888888888888877652222 123444566
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
.+...|++++|...++...... .....+....+.|.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888876644332 23455666777888888888888888764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.03 E-value=9e-05 Score=69.69 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKE--GILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHIL 441 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 441 (491)
+......++..+....+.+++..++.+.... ....-..|..++++.|.+.|..+++..+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555555666665555544 11122334446666666666666666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011201 442 VSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNA 483 (491)
Q Consensus 442 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 483 (491)
|+.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666665555545555555555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00034 Score=56.54 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGR-PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV--VTFNILIS 233 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~li~ 233 (491)
|..++..+ ..++...+...++.+.+..+.. ....+.-.+...+...|++++|...|+........++. ...-.|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33334433 3556666666666665542111 01122333445555666666666666666554422211 12233445
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYE 285 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 285 (491)
.+...|++++|+..++......+ ....+......|.+.|+.++|...|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55556666666666654332222 233444455556666666666665554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=68.92 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 255 GCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL--GCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 255 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
+...+......+++.+....+++++..++.+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||.++
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557778888888888888888899888888765 3333445667899999999999999999988888899999999
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRL 378 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 378 (491)
++.||+.+.+.|++..|.++..+|...+...+..++...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888877666777777777666654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0073 Score=51.60 Aligned_cols=188 Identities=15% Similarity=0.130 Sum_probs=140.7
Q ss_pred hcCCHHHHHHHHHHHhhC---C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHcCCC
Q 011201 202 KCREFDKALGFYDRMVRD---R-VKPDVV-TFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI-RGFFGERK 275 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~---~-~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~ 275 (491)
...+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++.++- |.+.-...|= --+-..|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 346789999999888653 4 555655 45566777888999999999999998873 3433222222 22345699
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHH
Q 011201 276 FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDE 355 (491)
Q Consensus 276 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 355 (491)
+++|+++|+.+.+.+ +-|..++---+...-..|+--+|++-+.+..+.- ..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999999887 3367777766667777788888888888777763 44888999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHC
Q 011201 356 LWKKGNLPSVIACTTLIEGLRRLR---KGVEASGLMEKMLKE 394 (491)
Q Consensus 356 m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 394 (491)
+.-..+. +...+..+...+.-.| +.+-+.++|.+..+.
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9886543 5566666666655544 455688889888874
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.016 Score=55.06 Aligned_cols=152 Identities=13% Similarity=0.028 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 011201 311 VLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP-SVIACTTLIEGLRRLRKGVEASGLME 389 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 389 (491)
.+....+++.++..-..--..+|..+++.-.+..-++.|..+|.+..+.+..+ ++..+++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55666677777655433334568889999999999999999999999987766 78889999998875 77789999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 390 KMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD--GMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 390 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.-.+. ..-+..--...+.-+...++-..+..+|+.....++.+| ..+|..+|.-=..-|+...+.++-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 77665 222344445677778889999999999999999866655 588999999989999999999998888654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.97 E-value=1e-05 Score=45.62 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEMLDEGF 466 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 466 (491)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.2e-05 Score=45.34 Aligned_cols=27 Identities=52% Similarity=1.003 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
|+.+|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00017 Score=53.10 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=44.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 371 LIEGLRRLRKGVEASGLMEKMLKEGI-LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTREN 449 (491)
Q Consensus 371 li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 449 (491)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..--.. .-.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~---------------------------~ie~ 83 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE---------------------------DIEN 83 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch---------------------------hHHH
Confidence 34444444555555555555555555 5555555555555443211000 0011
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 450 RRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 450 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
+.-+.+.+|+.|+..+++|+..||+.++..+.+
T Consensus 84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 333456666666666666666666666666654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=53.02 Aligned_cols=75 Identities=16% Similarity=0.393 Sum_probs=40.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRV-KPDVVTFNILISGFCRNK--------KFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
.|.-+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666666 566666666666555432 122344455555555555555555555
Q ss_pred HHHH
Q 011201 267 IRGF 270 (491)
Q Consensus 267 i~~~ 270 (491)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 5443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.015 Score=51.28 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=32.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 371 LIEGLRRLRKGVEASGLMEKMLKE--GILPDSVTFNCLLEDLCDVGRTVDADRLRLLA 426 (491)
Q Consensus 371 li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 426 (491)
+..-|.+.|.+..|..-++.+++. +..........+..+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344466666666666666666664 33333445556666666666666666655443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.044 Score=55.30 Aligned_cols=228 Identities=15% Similarity=0.130 Sum_probs=153.5
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHH--HHHcCChhHHHHHHHHHHHhcCCCCCHHHHH
Q 011201 117 RSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNA--FVKANRMNDGLLAFEAMRKLIDGRPSVSIYN 194 (491)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (491)
--....++|..|.+....+.+.... ..+..++.+ +.+.|+.++|..+++......+ .|..+..
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn-------------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq 81 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPN-------------ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQ 81 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCC-------------cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHH
Confidence 3445668899999999888775422 224444444 4579999999988888876543 4889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.+-.+|.+.++.++|..+|++..+. .|+......+..+|.+.+++.+-.+.--+|-+. +.-+...+=++++...+.-
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhc
Confidence 9999999999999999999998765 567777788888999988876544443333332 1113333334444443321
Q ss_pred C----------HHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHhhHHHHHHHHHc
Q 011201 275 K----------FDEGVNMAYEMIELG-CEFSSVTCEILVDGLCNEGRVLKACELV-IDFSRRGVLPKDFDYFGLVEKLCG 342 (491)
Q Consensus 275 ~----------~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~ 342 (491)
. ..-|.+.++.+.+.+ ..-+..-...-...+-..|++++|.+++ ....+.-...+...-+.-+..+..
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 234556666666554 2112222222233445678899999998 444455444455555677888899
Q ss_pred CCCHhHHHHHHHHHHHcCCC
Q 011201 343 EGNAGIALEVVDELWKKGNL 362 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~ 362 (491)
.+++.+..++-.++...|..
T Consensus 239 l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGND 258 (932)
T ss_pred hcChHHHHHHHHHHHHhCCc
Confidence 99999999999999998754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00042 Score=57.83 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 011201 187 RPSVSIYNVLINGFVKC-----REFDKALGFYDRMVRDRVKPDVVTFNILISGFCR 237 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 237 (491)
..+-.+|..+++.|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 46777888888887754 6788888888899999999999999999988754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0038 Score=56.77 Aligned_cols=173 Identities=15% Similarity=0.190 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP----SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
..|......|...|++++|.+.|.+........- -...|.....+|.+. ++++|.+.+++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH--------------
Confidence 4566677788888999998888887654311000 112233333333333 555555555443
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHH
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE-RKFDEGVNMAYEMIEL----GCE-FSSVTCEILVDG 304 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~ 304 (491)
+..|.+.|++..|-+++.++- ..|... |++++|++.|++..+. |-. --...+..+...
T Consensus 101 -~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 345666677666655555433 345555 7777777777766432 210 012344556666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-----Hh-hHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 305 LCNEGRVLKACELVIDFSRRGVLPK-----DF-DYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
+.+.|++++|.++|+++.......+ .. .+...+-++...||...|.+.+++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777777665432211 11 122223344445666666666666554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.025 Score=51.88 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=84.3
Q ss_pred HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 330 DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLED 409 (491)
Q Consensus 330 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 409 (491)
..+.+.-|.-+...|+...|.++-.+. -.|+-.-|-..+.+++..++|++..++... . -.+.-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 345566677778889888888876655 236888899999999999999988876542 1 134678889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 410 LCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
|.+.|+..+|..+... ..+..-+..|.+.|++.+|.+..-+.
T Consensus 247 ~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888755 22255677888999999988776554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0012 Score=51.05 Aligned_cols=100 Identities=14% Similarity=0.054 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP-SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVTFNILI 232 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li 232 (491)
++..++..+.+.|++++|.+.|+.+.+.....+ ....+..+...+.+.|++++|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566667777778888777777766431111 1345566777777777777777777777654211 1234556666
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC
Q 011201 233 SGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
.++.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66777777777777777777653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0096 Score=58.06 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
.+|+.+.+.++....|++|.+.|..-.. . ...+.++.+..++++-+.+...+.+ |....-.+..++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHH
Confidence 4566666666666666666666554221 1 1234444444445444444433332 445556666777
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 271 FGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
.+.|.-++|.+.|-+.- .+ ...+..|...+++.+|.++-+.
T Consensus 863 ~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRS---LP------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HhhchHHHHHHHHHhcc---Cc------HHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777766554421 11 2345556666666666665443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00065 Score=49.78 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
+..+...+...|++++|+..++.+.+.. +.+...+..+...+...+++++|.+.|+........ +...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 3445556666777777777777766542 233455666666666777777777777766554322 3345556666666
Q ss_pred hcCChhHHHHHHHHHHH
Q 011201 237 RNKKFDLALGLFREMRE 253 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~ 253 (491)
..|++++|...+.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666666544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0022 Score=53.51 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD--VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 455677777788888888888888888776533222 356777778888888888888888887775332 45566666
Q ss_pred HHHHHcCCCHHH
Q 011201 267 IRGFFGERKFDE 278 (491)
Q Consensus 267 i~~~~~~g~~~~ 278 (491)
...+...|+...
T Consensus 113 g~~~~~~g~~~~ 124 (172)
T PRK02603 113 AVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHcCChHh
Confidence 667777666443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00065 Score=49.79 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 272 (491)
+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 344555555666666666666665544211 2344555555566666666666666665554322 33455555555556
Q ss_pred CCCHHHHHHHHHHHHH
Q 011201 273 ERKFDEGVNMAYEMIE 288 (491)
Q Consensus 273 ~g~~~~a~~~~~~m~~ 288 (491)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666665555443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0021 Score=49.75 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVTFNILISGFCRNKKFDLALGLFREMREKGCN--PNVVSFNTLI 267 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~li 267 (491)
++..+...+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|++++|.+.|+++...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666667777777777666554211 01234455666666667777777777666654211 1134455566
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcC
Q 011201 268 RGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
.++.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666666553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00012 Score=52.84 Aligned_cols=82 Identities=10% Similarity=0.215 Sum_probs=43.9
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
.|++++|+.+|+++.+.....++...+-.+..+|.+.|++++|.++++. .+.+.. +....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566677777777666532111333444466666777777777777665 221111 22333344566666667777666
Q ss_pred HHHH
Q 011201 247 LFRE 250 (491)
Q Consensus 247 ~~~~ 250 (491)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0027 Score=52.99 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNIL 231 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 231 (491)
....+..+...+...|++++|+..|++..+.....++ ...+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 3456788888999999999999999998875322222 467889999999999999999999998875322 45667777
Q ss_pred HHHHHhcCChhHHHHHHH
Q 011201 232 ISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 232 i~~~~~~~~~~~A~~~~~ 249 (491)
...+...|+...+..-++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 778888777655444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0013 Score=54.67 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKP--DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
....|..+...+...|++++|...|++.......+ ...+|..+...+...|++++|++.+++....... ...++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 35566777777778888888888888876543222 2346777777888888888888888877765221 34455555
Q ss_pred HHHHH-------cCCCHHHHHHHHHH
Q 011201 267 IRGFF-------GERKFDEGVNMAYE 285 (491)
Q Consensus 267 i~~~~-------~~g~~~~a~~~~~~ 285 (491)
...+. ..|++++|+..+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 55555 55565555444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0025 Score=57.72 Aligned_cols=131 Identities=8% Similarity=0.083 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHH-HHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNA-FVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
.+|..+++.+.+.+..+.|..+|.+....+.. .-.+|...... |.-.++.+.|..+|+...+.+ ..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-----------~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~ 68 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC-----------TYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CC
Confidence 35677777777877788888888888754311 12344444444 223455666888888877765 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV---VTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+...|..-++.+.+.|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777777888888888888888888887655 22222 36777777777777777777777777664
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=52.69 Aligned_cols=80 Identities=15% Similarity=0.304 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 011201 204 REFDKALGFYDRMVRDRVK-PDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNM 282 (491)
Q Consensus 204 ~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 282 (491)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|.+++++ .+.+.. +......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555443221 1222333345555555555555555544 111111 222222334455555555555555
Q ss_pred HHH
Q 011201 283 AYE 285 (491)
Q Consensus 283 ~~~ 285 (491)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0023 Score=60.19 Aligned_cols=91 Identities=7% Similarity=-0.070 Sum_probs=57.9
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 011201 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRT 416 (491)
Q Consensus 337 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 416 (491)
...+...|++++|++.|++..+.... +...|..+..+|.+.|++++|+..++++++.. ..+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 44455667777777777777665443 55666666666677777777777777766642 11455566666666677777
Q ss_pred HHHHHHHHHHHHC
Q 011201 417 VDADRLRLLASTK 429 (491)
Q Consensus 417 ~~a~~~~~~~~~~ 429 (491)
++|...++...+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.018 Score=49.46 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=72.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---
Q 011201 234 GFCRNKKFDLALGLFREMREKGCN--PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE--- 308 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--- 308 (491)
.+...|++++|.+.|+++...... --....-.++.++.+.|++++|...++++.+.-......-+...+.+.+..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 344556666666666666554211 112334455556666666666666666665543222222222222222111
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011201 309 ----------GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRL 378 (491)
Q Consensus 309 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 378 (491)
+...+|... +..++.-|-.+.-..+|.+.+..+.+. =...--.+..-|.+.
T Consensus 94 ~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCT
T ss_pred ccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 111222222 233333344444455555544444332 011112244556666
Q ss_pred CChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHH
Q 011201 379 RKGVEASGLMEKMLKEGILPD----SVTFNCLLEDLCDVGRTVDA 419 (491)
Q Consensus 379 g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a 419 (491)
|.+..|..-++.+++. -|+ ......++.++.+.|..+.+
T Consensus 155 ~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp T-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777666666664 222 23445555566666665533
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0018 Score=58.63 Aligned_cols=130 Identities=10% Similarity=0.004 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 297 TCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEK-LCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375 (491)
Q Consensus 297 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 375 (491)
+|..++...-+.+..+.|.++|.+..+.+. .+..+|...... |...++.+.|.++|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455556666666666666666666653321 122233333333 22234455566666665553 222455555556666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 376 RRLRKGVEASGLMEKMLKEGILPD---SVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 376 ~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
.+.|+.+.|..+|++.+.. +.++ ...|...+.-=.+.|+++.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666655543 2211 135555555555555555555555555543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.047 Score=48.24 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=13.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLI 184 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (491)
.++.++.+.+++++|+..|++..+..
T Consensus 74 ~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34444555555555555555555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0028 Score=50.54 Aligned_cols=96 Identities=7% Similarity=0.005 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
.+..+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|.......+. |...+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34445556667788888888888777652 345666777777777778888888888877666543 666777777777
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 011201 236 CRNKKFDLALGLFREMREK 254 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~ 254 (491)
...|+.+.|.+-|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888877766654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0026 Score=52.86 Aligned_cols=121 Identities=9% Similarity=-0.074 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 365 VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP--DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILV 442 (491)
Q Consensus 365 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 442 (491)
...|..+...+...|++++|+..|++.......+ ...++..+...+...|+.++|...++...... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555666666777777777777776542222 12456666667777777777777777766542 22344455555
Q ss_pred HHHH-------hcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCc
Q 011201 443 SGYT-------RENRRKEGENLVNEMLDE---GFIPDLATYNSYMDGLSNARKS 486 (491)
Q Consensus 443 ~~~~-------~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~ 486 (491)
..+. ..|++++|...+++.... .+..+...+......+...|++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 5555 677777555555443221 1222333334444444444444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.02 Score=52.06 Aligned_cols=178 Identities=9% Similarity=0.095 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
.|......+-..+++++|...|........... ........|.....+|.+. ++++|+
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~-----~~~~Aa~~~~~Aa~~~k~~-~~~~Ai---------------- 94 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG-----DKFEAAKAYEEAANCYKKG-DPDEAI---------------- 94 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHT-THHHHH----------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhh-CHHHHH----------------
Confidence 466667777788888888777765532110000 0001112233333333222 333333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHc----CCCC-CHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN-KKFDLALGLFREMREK----GCNP-NVVSFN 264 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~----g~~p-~~~~~~ 264 (491)
..|...+..|.+.|++..|-+.+.++- ..|-+. |++++|++.|++..+. |-.- -...+.
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~ 159 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL 159 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH
Confidence 345555667788888888877776653 335555 7888888888776543 2100 133456
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-----h-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011201 265 TLIRGFFGERKFDEGVNMAYEMIELGCEFS-----S-VTCEILVDGLCNEGRVLKACELVIDFSRRG 325 (491)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 325 (491)
.+...+.+.|++++|.++|++....-...+ . ..+...+-++...||...|.+.+++.....
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 677788899999999999998876533211 1 122223335556789999999998887653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0038 Score=49.80 Aligned_cols=91 Identities=11% Similarity=-0.015 Sum_probs=50.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
+...+...|++++|.++|+-+...... +..-|..|..++-..|++++|+..|......++ -|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 333445556666666666655554333 445555555555566666666666666655543 245555555556666666
Q ss_pred HHHHHHHHHHHHh
Q 011201 311 VLKACELVIDFSR 323 (491)
Q Consensus 311 ~~~a~~~~~~~~~ 323 (491)
.+.|.+-|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.024 Score=48.79 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-----
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLV----- 337 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li----- 337 (491)
.+.++..+.-.|.+.-....+.+.++...+.+......+.+.-.+.||.+.|...|++..+..-+.|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345556666666777777777777766655566666777777777777777777777665543333333333322
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 338 EKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 338 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
..|...+++..|...++++...+.. ++..-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556666666666666655433 3444443333334456666677666666663
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.033 Score=51.20 Aligned_cols=161 Identities=16% Similarity=0.070 Sum_probs=80.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.....+.+..++.+|+..+....+.. +.+...|..-...+...+++++|.--.+.-.+.... ......-.-+++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhh
Confidence 33455677788888888888888763 345666776777777778888877666554332100 111222223333333
Q ss_pred CChhHHHHHHH---------------HHHHcCC-CCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011201 239 KKFDLALGLFR---------------EMREKGC-NPNVVSFNTL-IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEIL 301 (491)
Q Consensus 239 ~~~~~A~~~~~---------------~m~~~g~-~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 301 (491)
++..+|.+.++ ....... +|...+|..+ ..++.-.|++++|...--...+... ...+...
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~ 207 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALY 207 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHH
Confidence 44444443333 1111111 1222333332 2244456666666665555544331 1222233
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHhCC
Q 011201 302 VD--GLCNEGRVLKACELVIDFSRRG 325 (491)
Q Consensus 302 l~--~~~~~g~~~~a~~~~~~~~~~~ 325 (491)
++ ++.-.++.+.+...|++.++.+
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccC
Confidence 32 2233456666666666655543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0021 Score=53.75 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011201 259 NVVSFNTLIRGFFGE-----RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDY 333 (491)
Q Consensus 259 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 333 (491)
|..+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h--------- 114 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH--------- 114 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence 777777777777643 5666666677777777777777777777776543 2221 11111111110
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011201 334 FGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR 379 (491)
Q Consensus 334 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 379 (491)
.-.+.+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 115 --------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 115 --------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred --------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 11234556777777777777777777777777775444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0044 Score=58.31 Aligned_cols=93 Identities=6% Similarity=0.011 Sum_probs=77.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
....+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 3556678899999999999998863 456788888899999999999999999998876432 6677888888999999
Q ss_pred ChhHHHHHHHHHHHcC
Q 011201 240 KFDLALGLFREMREKG 255 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g 255 (491)
++++|+..|++..+..
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999988764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.037 Score=47.53 Aligned_cols=65 Identities=12% Similarity=0.250 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP-SVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
..+-.....+.+.|++.+|++.|+.+.......+ -..+.-.++.++.+.|++++|...++++.+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344556667788999999999999988643322 2455667788889999999999999998775
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.016 Score=57.15 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
...|.++.-.....|++++|...++++.+.. |+...|..+...|...|+.++|.+.+++..
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444566666666666666543 455566666666666666666666666655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0038 Score=54.74 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=45.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011201 377 RLRKGVEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGE 455 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 455 (491)
+.+++.+|+..|.+.++. .| |.+-|..=..+|++.|.++.|++-.+..+... +--...|..|..+|...|++++|.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 445555555555555542 22 33334444445555555555555444444321 112344555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q 011201 456 NLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 456 ~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
+.|++.+ .+.|+..+|..=+.
T Consensus 170 ~aykKaL--eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKAL--ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhh--ccCCCcHHHHHHHH
Confidence 5555554 34455554444333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.021 Score=56.40 Aligned_cols=137 Identities=10% Similarity=0.053 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC--------hh
Q 011201 105 FRHDHTTFLFIVRSLASSY-----RFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR--------MN 171 (491)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~ 171 (491)
.+.+..+|...+++..... .+..|..+|++.++.. |+...++..+..++..... +.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-----------P~~a~a~A~la~~~~~~~~~~~~~~~~l~ 401 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-----------PDFTYAQAEKALADIVRHSQQPLDEKQLA 401 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-----------CCcHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 3557788888888865543 3678999999988754 4445556555444432211 12
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 172 DGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
.+.+..++.........+...|..+.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222222222211112333445555444444555666666555555543 34555555555555555555555555555
Q ss_pred HHc
Q 011201 252 REK 254 (491)
Q Consensus 252 ~~~ 254 (491)
...
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.24 Score=49.29 Aligned_cols=128 Identities=9% Similarity=0.107 Sum_probs=68.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CCCHHH
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG-RPSVSI 192 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 192 (491)
.+|.-+...+.+..|.++...+...-... ..+|......+.+..+..+ .++++.+.+..+. .-...+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-----------~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~~iS 509 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-----------DRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSAKLTPGIS 509 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-----------cHHHHHHHHHHHhccCccc-hHHHHHHHHHhcccCCCcee
Confidence 45666667777777777776664321110 2456666666666543221 2344444433222 123345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVK----PDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
|..+......+|+++.|..+++.=...+.. .+..-+...+.-+.+.||.+-...++-.|..
T Consensus 510 y~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 510 YAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 666666667778888888877643222110 1222334445556666777766666666554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0014 Score=44.80 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=37.6
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 165 VKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
.+.|++++|++.|+++.+.. +.+..++..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677778888887777653 346677777777777888888888877777665
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.039 Score=53.53 Aligned_cols=88 Identities=10% Similarity=0.191 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCChhHHHHHH---------HHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCCh
Q 011201 157 FHFAVNAFVKANRMNDGLLAF---------EAMRKLIDGRPSVSIYNVLINGFVKCRE--FDKALGFYDRMVRDRVKPDV 225 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~ 225 (491)
+..-+..|...|.+++|.++- +.+-.. ..+.-.++..-++|.+-.+ +-+...-+++|+++|-.|+.
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 444566788888888875531 111110 1233334555556665544 33344445567777766776
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHH
Q 011201 226 VTFNILISGFCRNKKFDLALGLFRE 250 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~ 250 (491)
.. +...++-.|.+.+|-++|.+
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHH
Confidence 53 33445556777777777764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.19 Score=46.87 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHcCCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 011201 331 FDYFGLVEKLCGEGNAGIALEVVDELWKKG-NLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTF-NCLLE 408 (491)
Q Consensus 331 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~ 408 (491)
.+|...++.-.+..-++.|..+|-++.+.+ +.+++..++++|..++. |+..-|..+|+.-... -||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 356667777777888999999999999888 56788889999987764 7778899999876654 3454443 45556
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPD--GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGL 480 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 480 (491)
-+...++-+.|..+|+..+++ +..+ ...|..+|.--..-|+...+..+=++|.+. .|-..+-.....-|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 667889999999998865543 2223 577888898888889998888888888743 45554444444433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.024 Score=43.57 Aligned_cols=104 Identities=22% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKEGILPD--SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD----GMTYHILVSGY 445 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~ 445 (491)
..++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..+++...... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3445556666666666666666655433 2344455556666677777776666665531 22 12222233355
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 446 TRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLS 481 (491)
Q Consensus 446 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 481 (491)
...|+.++|++.+-.... ++...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 566777777666655442 23335555444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.012 Score=53.83 Aligned_cols=264 Identities=17% Similarity=0.106 Sum_probs=151.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH--HhhC--CCC-CChhhHHHH
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSV----SIYNVLINGFVKCREFDKALGFYDR--MVRD--RVK-PDVVTFNIL 231 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~--m~~~--~~~-p~~~~~~~l 231 (491)
...+++.|+....+.+|+...+.+ .-|. ..|..|.++|.-.+++++|+++... ...+ |-+ -...+-..|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 456899999999999999999874 3343 3477777788888899999886542 1111 100 011222233
Q ss_pred HHHHHhcCChhHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHcCCC--------------------HHHHHHHHHHH
Q 011201 232 ISGFCRNKKFDLALGLFRE----MREKGCN-PNVVSFNTLIRGFFGERK--------------------FDEGVNMAYEM 286 (491)
Q Consensus 232 i~~~~~~~~~~~A~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m 286 (491)
.+.+--.|.+++|+-.-.+ ..+.|-. .....+..+...|...|+ ++.|.++|.+-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 3344445666665433221 1111110 123345556666654442 23344444332
Q ss_pred H----HcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHhhHHHHHHHHHcCCCHhHHHHHHHHH
Q 011201 287 I----ELGCE-FSSVTCEILVDGLCNEGRVLKACELVIDFS----RRGVL-PKDFDYFGLVEKLCGEGNAGIALEVVDEL 356 (491)
Q Consensus 287 ~----~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 356 (491)
. +.|-. .--..|..|.+.|.-.|+++.|+...+.-+ +.|-. .....+..+.+++.-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 1 11100 012455666666777788888887665432 22322 22345677888888888898888888764
Q ss_pred HH----cCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 357 WK----KGN-LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE-----GILPDSVTFNCLLEDLCDVGRTVDADRLRLLA 426 (491)
Q Consensus 357 ~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 426 (491)
.. .|- .....+..+|...|.-..++++|+.++.+-..- ...-....+-+|..+|...|..++|..+.+..
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 221 123445566777777778888888887654331 11123456667777888888888887765543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0071 Score=53.08 Aligned_cols=87 Identities=16% Similarity=0.051 Sum_probs=44.3
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIA 349 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 349 (491)
..+.+++++|+..|.+.++.... |.+-|..-..+|++.|.++.|++-.+..+..+.. -..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 44455666666666666554322 4455555555555666555555555444443322 233445555555555555555
Q ss_pred HHHHHHHHH
Q 011201 350 LEVVDELWK 358 (491)
Q Consensus 350 ~~~~~~m~~ 358 (491)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555544443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0095 Score=52.58 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR---NKKFDLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
+-|...|-.|...|...|+++.|..-|.+..+.. ..|...+..+..++.. ..+..++.++|+++...... |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 3456666666666666666666666666655432 1133333333333222 22345566666666655333 45555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 264 NTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55556666666666666666666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.048 Score=48.29 Aligned_cols=121 Identities=14% Similarity=0.034 Sum_probs=79.8
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHC
Q 011201 353 VDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDV---GRTVDADRLRLLASTK 429 (491)
Q Consensus 353 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 429 (491)
++.-...++. |...|-.|...|...|+++.|..-|.+..+. -..+...+..+..++... ....++..+++++...
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3333344433 7788888888888888888888888888775 122455555555554433 2356777788888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 430 GLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 430 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
. +-|+....-|...+...|++++|...|+.|.+. -|....+..+++
T Consensus 223 D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 223 D-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred C-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 3 335666666777888888888888888888854 344444444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.17 Score=43.74 Aligned_cols=131 Identities=11% Similarity=-0.047 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH----
Q 011201 298 CEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIE---- 373 (491)
Q Consensus 298 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~---- 373 (491)
.+.++..+.-.|.+.-....+.+.++...+.+......+.+.-.+.||.+.|...|+...+..-..+..+++.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444444445555656666666666655555555566666666666666666666665554333334344433332
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 374 -GLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 374 -~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
.|.-.+++.+|...+.+....+-+ |....|.-.-+..-.|+...|.+.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233444555555555555544211 2222222222223345666666666666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.27 Score=48.50 Aligned_cols=178 Identities=19% Similarity=0.156 Sum_probs=91.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHH-----
Q 011201 294 SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIAC----- 368 (491)
Q Consensus 294 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----- 368 (491)
+....-.+..++.+.|.-++|.+.+-. .+.+ .+-+..|...+++.+|.++-+...-. .+.+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~~~l~----qv~tliak~a 917 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQRFQLP----QVQTLIAKQA 917 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHhccch----hHHHHHHHHH
Confidence 444555566667777776666655422 2111 23345555666666666655443211 11111
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH----HHHHHHHH-H----------HHhcCChHHHH
Q 011201 369 ---------TTLIEGLRRLRKGVEASGLMEKMLKE----GILPDS----VTFNCLLE-D----------LCDVGRTVDAD 420 (491)
Q Consensus 369 ---------~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~----~~~~~ll~-~----------~~~~g~~~~a~ 420 (491)
-.-|..+.+.|+.-+|.+++.+|-+. +.++-. ....+++- - --..|..++|.
T Consensus 918 aqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat 997 (1189)
T KOG2041|consen 918 AQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDAT 997 (1189)
T ss_pred HHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhh
Confidence 11244566677777777777777654 332221 11222211 1 11235566666
Q ss_pred HHHHHHHHC-------CCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 011201 421 RLRLLASTK-------GLDPDGMTYHILV--SGYTRENRRKEGENLVNEMLDE-GFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 421 ~~~~~~~~~-------g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g 484 (491)
.+++...-. +.-...+.|..+| .--...|.++.|++..-.+.+. .+-|...+|..+.-+-+...
T Consensus 998 ~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~r 1071 (1189)
T KOG2041|consen 998 DLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVR 1071 (1189)
T ss_pred hhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhh
Confidence 544332110 0011234454444 4456679999998876665543 56777888877766555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0027 Score=43.38 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=38.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 411 CDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYM 477 (491)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 477 (491)
.+.|++++|..+++.+.+.. +-+...+..+..+|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 34566777777777666553 225566666677777777777777777776643 45544444443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0054 Score=41.47 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=29.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
..+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555532 22445555555555555555555555555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.081 Score=40.47 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL 431 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 431 (491)
......+..+...|+-+...+++.++.+ +-+++......+..+|.+.|+..++.+++.++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344455555666666666666666554 2345555666666666666666666666666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.015 Score=53.30 Aligned_cols=272 Identities=14% Similarity=0.032 Sum_probs=163.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHH---HH-hcCCCCCHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAM---RK-LIDGRPSVS 191 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~-~~~~~~~~~ 191 (491)
..-++++|+....+.+|+..++.|.. .......+|..+.++|.-.+++++|+++...= .+ .++..-...
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 45688999999999999999887743 11223457888888999999999998865421 11 111111223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH----HhhCCC-CCChhhHHHHHHHHHhcCC--------------------hhHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDR----MVRDRV-KPDVVTFNILISGFCRNKK--------------------FDLALG 246 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~----m~~~~~-~p~~~~~~~li~~~~~~~~--------------------~~~A~~ 246 (491)
+...|.+.+--.|.+++|...-.+ ..+.|- ......+..|...|...|+ ++.|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 333444455555666666543221 111110 0123344445555544432 234555
Q ss_pred HHHHHHH----cCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHH----HcCCC-CChhhHHHHHHHHHhcCCHHHHHH
Q 011201 247 LFREMRE----KGCN-PNVVSFNTLIRGFFGERKFDEGVNMAYEMI----ELGCE-FSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 247 ~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
+|.+-.+ .|-. ..-..|..|-+.|.-.|+++.|+...+.-. +-|-+ .....+..+.+++.-.|+++.|.+
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 5543221 1100 012345566666677789999987765432 22311 123567778888889999999999
Q ss_pred HHHHHH----hCCC-CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 317 LVIDFS----RRGV-LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK-----GNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 317 ~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
.++... +.|- ........+|.+.|.-..++++|+..+.+-... ...-....+-+|..+|...|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 887643 2221 223456677888888888899999887764321 111145677788999999999999998
Q ss_pred HHHHHHHC
Q 011201 387 LMEKMLKE 394 (491)
Q Consensus 387 ~~~~m~~~ 394 (491)
+.+.-.+.
T Consensus 337 fae~hl~~ 344 (639)
T KOG1130|consen 337 FAELHLRS 344 (639)
T ss_pred HHHHHHHH
Confidence 88766553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.058 Score=41.44 Aligned_cols=53 Identities=17% Similarity=0.061 Sum_probs=22.3
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFS--SVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444443322 1222233344444444444444444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0041 Score=42.68 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER-KFDEGVNMAYEMI 287 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 287 (491)
.|..+...+.+.|++++|+..|++..+.... +...|..+..++.+.| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444443221 3334444444444444 3444444444433
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0045 Score=41.87 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=22.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
+.+.|++++|.+.|+++.+.... +...+..+..++.+.|++++|..+|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444443321 33444444444444444444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.022 Score=45.95 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=65.0
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 163 AFVKANRMNDGLLAFEAMRKLIDGR--PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
.....|+.+.+...++++....... ++... ..=.......++.+. ......++..+...|+
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDALERLAEALLEAGD 77 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccC
Confidence 3456778888888888877653221 12111 011111222222221 1234556666777788
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-----HcCCCCChhhHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMI-----ELGCEFSSVTCE 299 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~~ 299 (491)
+++|.++.+.+.....- |...|..+|.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 78 ~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 78 YEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 88888888877776443 66777888888888888888888777664 347777765543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.039 Score=44.53 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE-----KGCNPNVVS 262 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~ 262 (491)
+...++..+...|++++|.++.+.+....+. |...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445556666666666666666666654322 556666666666666666666666666532 366666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0069 Score=41.51 Aligned_cols=63 Identities=11% Similarity=0.230 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR-EFDKALGFYDRMVR 218 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~ 218 (491)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567777778888888888888888877763 346677777778888887 68888888777654
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.024 Score=50.57 Aligned_cols=94 Identities=15% Similarity=0.024 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDV----VTFNILISGFCRNKKFDLALGLFREMREKGCN--PNVVSFNTL 266 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l 266 (491)
|+..+..+.+.|++++|...|+.+.+.- |+. ..+..+...|...|++++|...|+.+.+.-.. .....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344445555555555544431 211 23334444444555555555555554433110 012233333
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~ 288 (491)
...+...|+.++|..+|+.+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444555555555554444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.34 Score=45.19 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 433 PDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 433 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.|...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35566677888888888999999988888855
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.031 Score=49.83 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVT 227 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~ 227 (491)
...|...+..+.+.|++++|+..|+.+.+.. |+ ..++-.+...|...|++++|...|+.+.+.-.. .....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4567777777778899999999999999874 43 356778889999999999999999999865211 12344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+-.+...+.+.|+.++|.++|+++.+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555667788999999999999999886
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.031 Score=43.41 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 443 (491)
|..++..+|.++++.|+.+....+++..= |+.++.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777776666665432 2221110 00000 1122334566666677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 011201 444 GYTRENRRKEGENLVNEMLDE-GFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g 484 (491)
+|+..|++..|+++.+...+. ++..+..+|..|++-+...-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 777777777777776666544 56666666666666554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.41 Score=44.34 Aligned_cols=257 Identities=13% Similarity=0.035 Sum_probs=151.0
Q ss_pred HHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011201 117 RSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVL 196 (491)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 196 (491)
..+.+..++..|+..+...+.. ||++..-|..-...+...|++++|..-.+.-.+... -....+.-.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~-----------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~ 123 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDM-----------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLRE 123 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHh-----------CccchhhhchhHHHHHHHHhHhhcccchhhheecCC--Cccccccch
Confidence 3444555666666666666553 355556666667777777777777655544433211 011112222
Q ss_pred HHHHHhcCCHHHHHHHHH---------------HHhhCCC-CCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 011201 197 INGFVKCREFDKALGFYD---------------RMVRDRV-KPDVVTFNIL-ISGFCRNKKFDLALGLFREMREKGCNPN 259 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~---------------~m~~~~~-~p~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~g~~p~ 259 (491)
-.++...++..+|.+.++ ....... +|.-.+|..+ ..++.-.|+.++|.+.--...+.. .
T Consensus 124 ~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~ 200 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---A 200 (486)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---c
Confidence 222222223333332222 2211111 1333444433 245667789999888877776652 1
Q ss_pred HHHHHHHHH--HHHcCCCHHHHHHHHHHHHHcCCCCChhh-------------HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 260 VVSFNTLIR--GFFGERKFDEGVNMAYEMIELGCEFSSVT-------------CEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 260 ~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------------~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
...+..+++ ++.-.++.+.+...|++.+..+. +... +..-.+-..+.|.+.+|.+.+.+.+..
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 223344444 34457788888888888776542 2211 111233456789999999999988865
Q ss_pred C---CCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHHC
Q 011201 325 G---VLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLI--EGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 325 ~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
+ ..++...|........+.|+..+|+.--++..+.+ +......+. .++...+++++|.+-|++..+.
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 55667778888888889999999999888887753 233333333 3455678899999999888775
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.43 Score=44.52 Aligned_cols=31 Identities=23% Similarity=0.054 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
+...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444555666666666666666666666653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.4 Score=44.15 Aligned_cols=105 Identities=18% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
.+..|.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-.++-.. .-++..|..++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334444455555555555443332 13555555555555555555554433211 1123455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHH
Q 011201 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEV 352 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 352 (491)
.|...+|..++.. ..+..-+..|.++|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHH
Confidence 5555555555433 1123445555555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.21 Score=40.87 Aligned_cols=119 Identities=17% Similarity=0.104 Sum_probs=47.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 011201 301 LVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNL-PSVIACTTLIEGLRRLR 379 (491)
Q Consensus 301 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g 379 (491)
|..+..+.|+..+|...|++...--..-|......+.++....++...|...++++.+.... -++.+...+...|...|
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g 174 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG 174 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC
Confidence 33334444444444444444333222333333333444444444444444444444332110 01112223344455555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 380 KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
+..+|..-|+.... .-|+...-......+.++|+.+++..
T Consensus 175 ~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 175 KYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred CchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 55555555555554 23333322222333344554444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0064 Score=42.92 Aligned_cols=66 Identities=14% Similarity=0.353 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011201 152 EMERIFHFAVNAFVKANRMNDGLLAFEAMRKLI---DG-RPS-VSIYNVLINGFVKCREFDKALGFYDRMV 217 (491)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~ 217 (491)
....+++.+...|...|++++|+..|++..+.. |. .++ ..+++.+..+|...|++++|++.+++..
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677888888888888888888888776431 11 122 4567777778888888888888877654
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.042 Score=44.18 Aligned_cols=93 Identities=14% Similarity=-0.005 Sum_probs=67.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
....-+-..|++++|..+|..+.... .-+..-|..|..++-..+++++|...|......+.. |...+-....++...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 33444557888999988888877642 346666777888888888888888888876554432 555555677788888
Q ss_pred CChhHHHHHHHHHHHc
Q 011201 239 KKFDLALGLFREMREK 254 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~ 254 (491)
|+.+.|.+.|....++
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 8888888888877763
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.24 Score=40.59 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=104.7
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHH
Q 011201 325 GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE---GILPDSV 401 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~ 401 (491)
...|+...-..|..++...|+..+|...|.+....-..-|......+.++....+++.+|...++++.+. +-.||
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 3457777778899999999999999999999887555568888889999999999999999999999886 33444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 402 TFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 402 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
+...+.+.+...|+..+|+.-|+...+. .|+...-......+.+.|+.++|..-+.++
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3456677889999999999999999886 455555444556677888777765544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.54 Score=44.08 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 011201 365 VIACTTLIEGLRRLRKGVEASGLMEKMLKEG-ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTY-HILV 442 (491)
Q Consensus 365 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~li 442 (491)
...|...+..-.+....+.|..+|-++.+.| +.++...+++++.-+| .|+..-|..+|+.-..+ -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3467778888888888999999999999988 6688889999998765 58888899998875554 2454444 4456
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcc
Q 011201 443 SGYTRENRRKEGENLVNEMLDEGFIPD--LATYNSYMDGLSNARKSV 487 (491)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~ 487 (491)
.-+.+-++-+.|..+|+..+.+ +.-+ ..+|..+|.--+.-|+..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchH
Confidence 6777889989999999966543 2223 467888887777777664
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.19 Score=42.97 Aligned_cols=208 Identities=15% Similarity=0.067 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 011201 107 HDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (491)
--...|.....++..+++|++|...+.+...-. ..=-..+-...-++.|..+.+++.+.
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~y------------------EnnrslfhAAKayEqaamLake~~kl--- 87 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY------------------ENNRSLFHAAKAYEQAAMLAKELSKL--- 87 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH------------------HhcccHHHHHHHHHHHHHHHHHHHHh---
Confidence 334567777788888889998888777664211 00011122233345666666666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---C--CCCCHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK---G--CNPNVV 261 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g--~~p~~~ 261 (491)
.--+..|+--..+|..+|..+-|-..+++.-+ ..+..+.++|+++|++...- + .+.-..
T Consensus 88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 88 SEVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 12244566777778888888777777666433 12334455555555543221 0 000122
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCC----CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhhH
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEMIELGC----EFSS-VTCEILVDGLCNEGRVLKACELVIDFSRRG---VLPKDFDY 333 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 333 (491)
.+..+-+++.+...+++|-..+.+-..... .++. ..|...|-.+.-..++..|..+++.-.+.+ -.-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 334444555566666665544443221100 0011 122333334444456666666665533321 11123344
Q ss_pred HHHHHHHHcCCCHhHHHHH
Q 011201 334 FGLVEKLCGEGNAGIALEV 352 (491)
Q Consensus 334 ~~li~~~~~~g~~~~a~~~ 352 (491)
..|+.+| ..||.+++.++
T Consensus 232 enLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHh-ccCCHHHHHHH
Confidence 4444444 23444444443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.051 Score=42.20 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=56.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 294 SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIE 373 (491)
Q Consensus 294 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 373 (491)
|..++..+|.++++.|+.+....+++..- |+..+... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566666666777777666666665443 22211100 0000 0112234577777777777
Q ss_pred HHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 011201 374 GLRRLRKGVEASGLMEKMLKE-GILPDSVTFNCLLEDLC 411 (491)
Q Consensus 374 ~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 411 (491)
+|+..|++..|+++.+...+. ++..+..+|..|++-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777777665 66666777777776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.12 Score=48.93 Aligned_cols=69 Identities=19% Similarity=0.082 Sum_probs=60.5
Q ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 148 FSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV----SIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
-..|.....++.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3557788999999999999999999999999988873 553 45899999999999999999999998874
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.77 Score=43.20 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=85.4
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011201 118 SLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMER-IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVL 196 (491)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 196 (491)
.+-+.+++.++..+|.++.......+ + .-..+ .-+.++++|.. ++.+.-...+....+..|..+-...+..+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~----f--~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSP----F--LLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcch----H--HHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 45677899999999988865432110 0 00112 23455666654 44555555666666654322322223222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC--CCCC------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC
Q 011201 197 INGFVKCREFDKALGFYDRMVRD--RVKP------------DVVTFNILISGFCRNKKFDLALGLFREMREKG----CNP 258 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~~p 258 (491)
.+.+.+.+++|.+.+....+. +-.+ |-..=+..++++.+.|++.++..++++|..+= ..-
T Consensus 88 --~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 88 --VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred --HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 244678888888888776554 2221 11122566788889999999998888887642 335
Q ss_pred CHHHHHHHHHHHH
Q 011201 259 NVVSFNTLIRGFF 271 (491)
Q Consensus 259 ~~~~~~~li~~~~ 271 (491)
+..+|+.++-.+.
T Consensus 166 ~~d~yd~~vlmls 178 (549)
T PF07079_consen 166 NSDMYDRAVLMLS 178 (549)
T ss_pred cHHHHHHHHHHHh
Confidence 7778877554443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.2 Score=38.41 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=79.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 307 NEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
-.|.+++..+++.+..... +..-+|.+|--....-+-+...++++.+-+ ..|... .|+......
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISK----------CGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-----------S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchh----------hcchHHHHH
Confidence 3577777788777776553 333455555444444444444444444332 122221 223322222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011201 387 LMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGF 466 (491)
Q Consensus 387 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 466 (491)
-+-.+ ..+...+...+..+...|+-|+-.++...+.+.+ .+++...-.+..+|.+.|+..++.+++.+..++|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22111 1244556677788899999999999999887643 67888899999999999999999999999999987
Q ss_pred C
Q 011201 467 I 467 (491)
Q Consensus 467 ~ 467 (491)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.77 Score=42.31 Aligned_cols=295 Identities=13% Similarity=0.096 Sum_probs=186.6
Q ss_pred HHHHHHHHHHH--cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCCChhhHHH-
Q 011201 156 IFHFAVNAFVK--ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV--KCREFDKALGFYDRMVRDRVKPDVVTFNI- 230 (491)
Q Consensus 156 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~- 230 (491)
-|..|-.++.. .|+-..|.++-.+..+.. .-|....-.|+.+.. -.|+++.|.+-|+.|.. |..+--.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~ll--ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllG 156 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLL--SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLG 156 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhh--hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHh
Confidence 34455445444 577777877776665432 344444444554433 35999999999999986 4444333
Q ss_pred ---HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCChh--hHHHHHHH
Q 011201 231 ---LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG-CEFSSV--TCEILVDG 304 (491)
Q Consensus 231 ---li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~ 304 (491)
|.-..-+.|+.+.|.+.-+..-..... -...+...+...|..|+++.|+++++.-++.. +.++.. .-..|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 333345678888888888877665332 35678899999999999999999999776543 333321 12233322
Q ss_pred HH---hcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011201 305 LC---NEGRVLKACELVIDFSRRGVLPKDF-DYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRK 380 (491)
Q Consensus 305 ~~---~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 380 (491)
-. -..+...|...-.+..+. .|+.. .-..-..++.+.|++.++-.+++.+.+....|++. ..|.+...
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~ 307 (531)
T COG3898 236 KAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARS 307 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcC
Confidence 11 123455555554444332 33321 12234567889999999999999999987665542 23333333
Q ss_pred hHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 011201 381 GVEASGLMEKMLKE-GILPD-SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR-ENRRKEGENL 457 (491)
Q Consensus 381 ~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~ 457 (491)
.+.+..-+++..+. .++|| ......+..+....|++..|..--+..... .|....|..|.+.-.. .|+-.++...
T Consensus 308 gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 308 GDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred CCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHH
Confidence 34455544444332 35555 556666777777889988887766655553 6888888888776544 4999999999
Q ss_pred HHHHHHCCCCC
Q 011201 458 VNEMLDEGFIP 468 (491)
Q Consensus 458 ~~~m~~~~~~p 468 (491)
+-+.++..-.|
T Consensus 386 lAqav~APrdP 396 (531)
T COG3898 386 LAQAVKAPRDP 396 (531)
T ss_pred HHHHhcCCCCC
Confidence 99888764444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.59 Score=40.68 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=37.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 371 LIEGLRRLRKGVEASGLMEKMLKEGILPD---SVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 371 li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
+..-|.+.|.+..|..-+++|++. ..-+ ...+-.+..+|...|-.++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 445677788888888888888776 2222 334555666777777777777765555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.18 Score=40.69 Aligned_cols=87 Identities=13% Similarity=-0.056 Sum_probs=48.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 314 (491)
+...|++++|..+|.-+...+.. |..-|..|..++-..+++++|+..|......+. -|...+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 34556666666666665554433 444455555556566666666666665544432 2334444455556666666666
Q ss_pred HHHHHHHHh
Q 011201 315 CELVIDFSR 323 (491)
Q Consensus 315 ~~~~~~~~~ 323 (491)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666655554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.033 Score=38.54 Aligned_cols=54 Identities=19% Similarity=0.041 Sum_probs=27.1
Q ss_pred HHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 339 KLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 339 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
.|.+.+++++|.++++.+...++. +...|......+.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555544332 444444445555555555555555555554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.024 Score=39.27 Aligned_cols=55 Identities=11% Similarity=0.173 Sum_probs=29.3
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 163 AFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
.|.+.+++++|+++++.+.+.. +.+...|.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455555555555555555542 234444555555555555555555555555543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.044 Score=47.71 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----------------ChhHHH
Q 011201 187 RPSVSIYNVLINGFVKC-----REFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK----------------KFDLAL 245 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------------~~~~A~ 245 (491)
+.|-.+|-+.+..+... +.++-....++.|.+-|++-|..+|+.|++.+-|.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34555555555555432 456666667777878888888888888877654432 234577
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHH
Q 011201 246 GLFREMREKGCNPNVVSFNTLIRGFFGERKF-DEGVNMAYEM 286 (491)
Q Consensus 246 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m 286 (491)
+++++|...|+.||..+-..|++++.+.+-. .+..++.-.|
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 8888888888888888888888888777653 3334444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.016 Score=40.78 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEM 286 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m 286 (491)
++..+..+|...|++++|++++++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.44 Score=46.70 Aligned_cols=87 Identities=11% Similarity=0.026 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH----------
Q 011201 296 VTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSV---------- 365 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---------- 365 (491)
.+...+...+.+...+..|-++|..|-. ...+++.....+++++|..+-+...+.- +|+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~--~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFK--DDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcccc--ccccchHHHHhhh
Confidence 3344444444455566666677766532 3445666677777777777766554421 111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 366 -IACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 366 -~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
.-|...-.+|.+.|+-.+|.++++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1122223445566666666666666544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.13 Score=44.96 Aligned_cols=100 Identities=9% Similarity=0.052 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS- 189 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 189 (491)
.|+..+..+ ++|++..|...|...+...... +-...++..|..++...|++++|..+|..+.+..+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s--------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNS--------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCC--------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 455554433 4555777777776666654321 122355666677777777777777777666665433332
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
..++--|..+..+.|+.++|...|+++.++
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 355556666666666777777777666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.25 Score=47.78 Aligned_cols=160 Identities=14% Similarity=0.022 Sum_probs=97.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
.....-.|+++++.+....-.-... -| ..-.+.++..+.+.|..+.|+++...-. .-.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~-i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPN-IP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhccc-CC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 4555667888887666642111101 12 4457888888888898888888765432 23455667888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
++.|.++.++.. +...|..|.....+.|+++-|++.|++... +..|+-.|.-.|+.+...++.+.
T Consensus 334 L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 888887765432 677888888888888888888888887532 45566677778888777777766
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHH
Q 011201 321 FSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDE 355 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 355 (491)
...+|- ++....++...|++++..+++.+
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666542 44455555556777766666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.33 Score=46.89 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=105.9
Q ss_pred HHHHHhcCChhHHHHHHH--HHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHH
Q 011201 116 VRSLASSYRFSELHSVLN--FISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIY 193 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 193 (491)
.+...-.++++++..+++ .+... -| ......++.-+-+.|..+.|+.+-..-.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~-----------i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------ 322 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPN-----------IP--KDQGQSIARFLEKKGYPELALQFVTDPD------------ 322 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG---------------HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------
T ss_pred HHHHHHcCChhhhhhhhhhhhhccc-----------CC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------
Confidence 344455678888766664 11110 01 3446777888888999999988743322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
.-.+...+.|+++.|.++.++. .+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.
T Consensus 323 -~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~ 386 (443)
T PF04053_consen 323 -HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSST 386 (443)
T ss_dssp -HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHC
T ss_pred -HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHh
Confidence 3366678899999999886554 2778999999999999999999999997664 56777788888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
|+.+...++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 387 g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 387 GDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 999888888877776652 45556666677888888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.3 Score=40.09 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=69.2
Q ss_pred HHcCChhHHHHHHHHHHHhc-CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCCh----
Q 011201 165 VKANRMNDGLLAFEAMRKLI-DGRPSV------SIYNVLINGFVKCREFDKALGFYDRMVRD--------RVKPDV---- 225 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------~~~p~~---- 225 (491)
.+.|+++.|..++.++.... ...|+. ..||.-...+.+..+++.|..++++..+- ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999999887753 223332 23444444443333777777766654332 112222
Q ss_pred -hhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 226 -VTFNILISGFCRNKKFD---LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 226 -~~~~~li~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.++..++.+|...+..+ +|.++++.+...... ....+..-+..+.+.++.+++.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 24455666666665543 455555555443222 2444445555555567777777777777665
|
It is also involved in sporulation []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.8 Score=42.19 Aligned_cols=307 Identities=9% Similarity=0.090 Sum_probs=176.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE--FDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
.++..+...+.+..|+++-..+..... ....+|.....-+.+..+ -+++.+.+++=.+... -...+|..+..-..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 457888888999999998877754211 125667777777777632 2334443333222222 34557777787778
Q ss_pred hcCChhHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----------CCCChhhHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCN----PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG-----------CEFSSVTCEIL 301 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------~~~~~~~~~~l 301 (491)
.+|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+...- .......|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 899999998887643222111 122234555666777888887777766665431 01111222222
Q ss_pred HH--------HHHhcCCHHHHHHHH--HHHH----hCCCCCCHhhHHHHHHHHHcCCCHhHHH----------HHHHHHH
Q 011201 302 VD--------GLCNEGRVLKACELV--IDFS----RRGVLPKDFDYFGLVEKLCGEGNAGIAL----------EVVDELW 357 (491)
Q Consensus 302 l~--------~~~~~g~~~~a~~~~--~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~----------~~~~~m~ 357 (491)
++ .+.+.++-.++...| +... ..+..|+ .....+.+.+.....-.. ++.+.+.
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le 675 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE 675 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 21 011111111111111 1100 0122222 233344444443322111 1122222
Q ss_pred H-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 011201 358 K-KGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGM 436 (491)
Q Consensus 358 ~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 436 (491)
. .|......+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+..+ .+.
T Consensus 676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPI 745 (829)
T KOG2280|consen 676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPI 745 (829)
T ss_pred HHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCC
Confidence 1 2323344456666777788899889888876653 4688888888888999999988777644322 256
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
-|.-.+.+|.+.|+.+||.+++.+.- |.. -...+|.+.|++.+|.
T Consensus 746 Gy~PFVe~c~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 746 GYLPFVEACLKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEAA 790 (829)
T ss_pred CchhHHHHHHhcccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHHH
Confidence 77888899999999999999988773 221 5677888888888774
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.12 Score=45.20 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----------------CHHHHHHH
Q 011201 224 DVVTFNILISGFCR-----NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER----------------KFDEGVNM 282 (491)
Q Consensus 224 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~~~ 282 (491)
|-.+|-..+..+.. .+.++-....++.|.+.|++-|..+|+.|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44445444444432 3556666667888999999999999999998765442 33467888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHH
Q 011201 283 AYEMIELGCEFSSVTCEILVDGLCNEGRV-LKACELVIDF 321 (491)
Q Consensus 283 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 321 (491)
+++|...|+-||..+-..+++++.+.+-. .+..++.-.|
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 99999999999999999999998877653 2333333333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1 Score=36.53 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=68.7
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh-hHHHH--HHHHHhcCC
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVV-TFNIL--ISGFCRNKK 240 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~~~ 240 (491)
+.+.++.++|+..|..+.+.+-..--+-..-.........|+...|...|+++-.....|-.. -..-| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456677777777777777652211112222233445566677777777777776543333322 11111 122445666
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
++......+.+...|-..-...-..|.-+-.+.|++.+|.++|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666666665554443333444455555666667777777777666543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.27 Score=46.60 Aligned_cols=66 Identities=9% Similarity=0.000 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV----VTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999998876 4453 35899999999999999999999999885
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.52 E-value=4.2 Score=43.31 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhh
Q 011201 187 RPSVSIYNVLINGFVKCR--EFDKALGFYDRMVR 218 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~ 218 (491)
.|+ .-.-.+|..|++.+ .++.|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 345 44556778888877 67777777777654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.45 E-value=1 Score=35.87 Aligned_cols=11 Identities=0% Similarity=-0.061 Sum_probs=4.5
Q ss_pred CCHHHHHHHHH
Q 011201 449 NRRKEGENLVN 459 (491)
Q Consensus 449 g~~~~A~~~~~ 459 (491)
++++.|.++++
T Consensus 110 ~d~~~a~~~~~ 120 (140)
T smart00299 110 GNYEKAIEYFV 120 (140)
T ss_pred cCHHHHHHHHH
Confidence 34444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.43 Score=48.23 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLI----NGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
...-+..+.+...++-|+.+-+.- ..+......+. +.+.+.|++++|...|-+-... ++| ..+|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 344455556666666655543221 12222222222 3334456666666655543321 111 1244
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
.-|.+..++.+-...++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 5555555566666666666666665 55555666666666666665555444432 2211 011234444555555555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHH
Q 011201 313 KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDEL 356 (491)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 356 (491)
+|..+-..... +...... .+-..+++++|++.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 55444333222 1111222 223445666666666554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.2 Score=40.61 Aligned_cols=156 Identities=11% Similarity=0.052 Sum_probs=66.8
Q ss_pred HhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHcC
Q 011201 201 VKCREFDKALGFYDRMVRD--RVKPDVVTFNILISGFCRNKKFDLALGLFREMREK--GCNPN---VVSFNTLIRGFFGE 273 (491)
Q Consensus 201 ~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~ 273 (491)
....+.++|+..+..-..+ ...---.+|..+..+.++.|.+++++..--.-.+. ..+-. -..|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667776666655442 01111234555666666666666554432211111 00100 12233333333333
Q ss_pred CCHHHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHcCC
Q 011201 274 RKFDEGVNMAYEMIEL-GCEFS---SVTCEILVDGLCNEGRVLKACELVIDFSRRG-----VLPKDFDYFGLVEKLCGEG 344 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~-~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g 344 (491)
-++.+++.+-..-... |..+. -....++..+....+.++++++.|+...+.. ......+|..|-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 3344444333332221 11111 1122234444555555666666665544321 1122344555555566666
Q ss_pred CHhHHHHHHHHH
Q 011201 345 NAGIALEVVDEL 356 (491)
Q Consensus 345 ~~~~a~~~~~~m 356 (491)
|+++|.-+..+.
T Consensus 177 D~~Kal~f~~kA 188 (518)
T KOG1941|consen 177 DYEKALFFPCKA 188 (518)
T ss_pred hhhHHhhhhHhH
Confidence 666655544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.1 Score=35.67 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=17.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
++..+.+.+.......+++.+...+. .+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33333334444444444444444332 233444444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=2 Score=37.54 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP-SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
+-.-+..-.+.|++++|.+.|+.+.......| ...+.-.++.++.+.+++++|+..+++....-..-...-|-.-|.++
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 33444555688999999999999987643222 34555666778888899999999999887763332233344445554
Q ss_pred H
Q 011201 236 C 236 (491)
Q Consensus 236 ~ 236 (491)
+
T Consensus 117 s 117 (254)
T COG4105 117 S 117 (254)
T ss_pred H
Confidence 4
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.67 Score=43.00 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=73.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.-.+.|.+.|++..|...|+++....... +.-+.++...... .-..+++.|..+|.+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~--------------~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYR--------------RSFDEEEQKKAEA--------LKLACHLNLAACYLKL 270 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhcc--------------ccCCHHHHHHHHH--------HHHHHhhHHHHHHHhh
Confidence 34567888899999988888866542210 0011111111111 0123455566666666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHH
Q 011201 239 KKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRV-LKACEL 317 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~ 317 (491)
+++..|++.-++....+.. |+-....-..+|...|+++.|...|+++++.... |..+-+.++..-.+.... +...++
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655332 5555555556666666667776666666654322 333333333333333332 233455
Q ss_pred HHHHHh
Q 011201 318 VIDFSR 323 (491)
Q Consensus 318 ~~~~~~ 323 (491)
|..|..
T Consensus 349 y~~mF~ 354 (397)
T KOG0543|consen 349 YANMFA 354 (397)
T ss_pred HHHHhh
Confidence 555543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.08 E-value=3.5 Score=43.85 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCCCCHH
Q 011201 113 LFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKA-NRMNDGLLAFEAMRKLIDGRPSVS 191 (491)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~ 191 (491)
..-++.+...+++.+|..+.++-.- ..+ +........|..-+.++.+. ++.+--..++..+... + -+..
T Consensus 681 La~vr~~l~~~~y~~AF~~~RkhRi---dln----ii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~e-D--vtk~ 750 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKHRI---DLN----IIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEE-D--VTKT 750 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---Ccc----chhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccc-h--hhhh
Confidence 4445666677778877766654322 111 11111134455555565553 3344333333333321 0 1111
Q ss_pred HHHHHH----HHHHhc----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 011201 192 IYNVLI----NGFVKC----REFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK--KFDLALGLFREMRE 253 (491)
Q Consensus 192 ~~~~li----~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~ 253 (491)
.|.... ..|... +.+....+.+.....+ ..|+ .....+|..|.+.+ .+++|+....+...
T Consensus 751 ~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 751 MYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hccccccccceeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 111110 111111 2233334444433333 2345 44456788888887 77888877777764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=2.9 Score=38.75 Aligned_cols=307 Identities=14% Similarity=0.062 Sum_probs=189.1
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHH-HHHHHHcC
Q 011201 92 DFHIFAWASTIDSFRHDHTTFLFIVRSLASS--YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFA-VNAFVKAN 168 (491)
Q Consensus 92 a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 168 (491)
+.+.|+...+.++ |..|-..+... |+-..|..+-.+....- + .+.+...+.| .++-.-.|
T Consensus 72 ~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~ll---------s-sDqepLIhlLeAQaal~eG 134 (531)
T COG3898 72 ARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLL---------S-SDQEPLIHLLEAQAALLEG 134 (531)
T ss_pred HHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhh---------h-ccchHHHHHHHHHHHHhcC
Confidence 4455555555443 45555555444 66666766655443211 0 0111222222 34455689
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSI--YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
+++.|.+-|+.|... |.... ...|.-.-.+.|..+.|.+.-++....-.. -...+...+...|..|+|+.|++
T Consensus 135 ~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 135 DYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred chHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHH
Confidence 999999999999862 43332 333444445678899998888876654221 34578889999999999999999
Q ss_pred HHHHHHHc-CCCCCHHH--HHHHHHHHH---cCCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHH
Q 011201 247 LFREMREK-GCNPNVVS--FNTLIRGFF---GERKFDEGVNMAYEMIELGCEFSSVTC-EILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 247 ~~~~m~~~-g~~p~~~~--~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~ 319 (491)
+++.-... -+.+++.- -..|+.+-. -..+...|...-.+..+ +.||..-- .....++.+.|+..++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 99987654 23444332 222332221 12334455555444443 34443322 234578899999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIAL-EVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP 398 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 398 (491)
.+-+....|+.. .+..+.+.|+..... +-.+.+..... .+..+...+..+-...|++..|..--+.... ..|
T Consensus 288 ~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~p 360 (531)
T COG3898 288 TAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAP 360 (531)
T ss_pred HHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCc
Confidence 999988777643 334456667643221 11122222211 1566666777788888999888777766665 578
Q ss_pred CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC
Q 011201 399 DSVTFNCLLEDLC-DVGRTVDADRLRLLASTK 429 (491)
Q Consensus 399 ~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~ 429 (491)
....|..+.+.-. ..|+-.++...+.+..+.
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8888888887544 449999999988887765
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.72 Score=40.52 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 011201 367 ACTTLIEGLRRLRKGVEASGLMEKMLKEG--ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK-GLDP-DGMTYHILV 442 (491)
Q Consensus 367 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p-~~~~~~~li 442 (491)
.|+.-+..+ +.|++.+|...|...++.. -.-....+-.|..++...|++++|..+|..+.+. +-.| -...+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444332 3445555555555555541 0111223334555555555555555555554442 1111 123444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 011201 443 SGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555555556666655555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.89 E-value=2.8 Score=41.21 Aligned_cols=161 Identities=16% Similarity=0.030 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH-----hhHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHHHH
Q 011201 299 EILVDGLCNEGRVLKACELVIDFSRRG-VLPKD-----FDYFGLVEKLCG----EGNAGIALEVVDELWKKGNLPSVIAC 368 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-----~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 368 (491)
..+++...=.||-+.+++.+.+..+.+ +.... ..|..++..++. ..+.+.|.++++.+..+- |+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHH
Confidence 344455555667777776666654432 22111 123344443333 345677888888887753 455555
Q ss_pred HHHH-HHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 011201 369 TTLI-EGLRRLRKGVEASGLMEKMLKEG---ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS- 443 (491)
Q Consensus 369 ~~li-~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~- 443 (491)
...- +.+...|+.++|++.|++..... -+.....+--+...+.-.+++++|.+.+..+.+.. ......|.-+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 4332 34556788888888888655321 11223344455556677788888888888877643 234444444433
Q ss_pred HHHhcCCH-------HHHHHHHHHHH
Q 011201 444 GYTRENRR-------KEGENLVNEML 462 (491)
Q Consensus 444 ~~~~~g~~-------~~A~~~~~~m~ 462 (491)
++...|+. ++|.++|++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34456766 77777777664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.78 E-value=2.4 Score=36.54 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=65.4
Q ss_pred CChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 168 NRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD-RVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
+....+...+...............+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555443210012456666677777777777777777766542 122344455555566666666777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHHHH
Q 011201 247 LFREMREKGCNPNVVSFNTLIR-GFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 247 ~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~ 288 (491)
.+.........+ ......... .+...|+++.+...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777666543332 112222222 55666666666666666643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.4 Score=34.73 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP-SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
+-.-.....+.|++++|++.|+.+.......+ ...+.-.|+.+|.+.+++++|...++++++....---.-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33445556688999999999999998753322 35566778899999999999999999998875443334565556665
Q ss_pred Hhc
Q 011201 236 CRN 238 (491)
Q Consensus 236 ~~~ 238 (491)
+.-
T Consensus 93 ~~~ 95 (142)
T PF13512_consen 93 SYY 95 (142)
T ss_pred HHH
Confidence 443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.65 E-value=4.4 Score=38.98 Aligned_cols=57 Identities=21% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHHHcCCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 335 GLVEKLCGEGNAGIALEVVDELWKKGNL-PSVIACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 335 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
.+..++-+.|+.++|.+.+++|.+.... -.......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444445556666666666665543221 12234445555666666666666665554
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.59 E-value=1 Score=35.54 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=33.8
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 307 NEGRVLKACELVIDFSRRGV--LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 375 (491)
+.|++++|.+.|+.+..+-. .-.......++.+|.+.|++++|...+++.++..+.-..+-|...+.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 44555555555555554421 1122334455555556666666666666655544333333344444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.1 Score=40.86 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=140.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HhhCC-CCCChhhHHHHHHHH
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLID-GRPSVSIYNVLINGFVKCREFDKALGFYDR----MVRDR-VKPDVVTFNILISGF 235 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----m~~~~-~~p~~~~~~~li~~~ 235 (491)
.-+....+.++|+..+.+...... ......+|..+..+.++.|.+++++..--. ..+.. -..--..|-.+.+++
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSN 93 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888999988887655321 122345678888888999988887654322 22210 000112344444555
Q ss_pred HhcCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHH
Q 011201 236 CRNKKFDLALGLFREMREK-GCNP---NVVSFNTLIRGFFGERKFDEGVNMAYEMIELG-----CEFSSVTCEILVDGLC 306 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~ 306 (491)
-+.-++.+++.+-..-... |..+ --....++..++...+.++++++.|+...+.. ......+|..+-..|.
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 5545555555544433322 3222 11233456677888889999999999876532 1223467889999999
Q ss_pred hcCCHHHHHHHHHHHHh----CCCCCCHhhH-----HHHHHHHHcCCCHhHHHHHHHHHHH----cCCCC-CHHHHHHHH
Q 011201 307 NEGRVLKACELVIDFSR----RGVLPKDFDY-----FGLVEKLCGEGNAGIALEVVDELWK----KGNLP-SVIACTTLI 372 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~----~~~~~~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~-~~~~~~~li 372 (491)
+..|+++|.-+.....+ .++.--..-| ..|.-++...|++..|.+.-++..+ .|-.+ .......+.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99999999887765543 2333111222 2344566677888888888877654 34111 123334566
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 011201 373 EGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 373 ~~~~~~g~~~~a~~~~~~m~~ 393 (491)
+.|...|+.+.|+.-|++...
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 677888888888887776654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.9 Score=36.04 Aligned_cols=118 Identities=15% Similarity=0.073 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 011201 204 REFDKALGFYDRMVRDRVK-PDVVTFNILISGFCRNKKFDLALGLFREMREK-GCNPNVVSFNTLIRGFFGERKFDEGVN 281 (491)
Q Consensus 204 ~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~ 281 (491)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+.+..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555554443221 12345555555666666666666666655542 122234445555555555566666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHH
Q 011201 282 MAYEMIELGCEFSSVTCEILVD-GLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 282 ~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~ 322 (491)
.+.......... ......... .+...|+++.+...+....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666655433222 111111122 4455555555555555553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.32 E-value=3.7 Score=36.68 Aligned_cols=141 Identities=19% Similarity=0.126 Sum_probs=70.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 011201 304 GLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVE 383 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 383 (491)
.....|++.+|..+|+........ +...-..+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345567777777777766655433 2334556666777777777777777766543221112222222333444444444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcC
Q 011201 384 ASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLAST--KGLDPDGMTYHILVSGYTREN 449 (491)
Q Consensus 384 a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~p~~~~~~~li~~~~~~g 449 (491)
...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+ .|. -|...-..++..+.--|
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcC
Confidence 4444333333 23 444444555556666666666654333322 222 23444445555554444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.2 Score=34.26 Aligned_cols=90 Identities=20% Similarity=0.039 Sum_probs=60.2
Q ss_pred HHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHHhcC
Q 011201 339 KLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE-GILPDSV---TFNCLLEDLCDVG 414 (491)
Q Consensus 339 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~---~~~~ll~~~~~~g 414 (491)
++...|+++.|++.|.+....-++ ....||.-..++.-.|+.++|++-+++..+. |-+ +.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456677888888888877765333 5677888888888888888888888777765 322 222 2222223456677
Q ss_pred ChHHHHHHHHHHHHCC
Q 011201 415 RTVDADRLRLLASTKG 430 (491)
Q Consensus 415 ~~~~a~~~~~~~~~~g 430 (491)
+-+.|..=|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888877777776665
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.32 E-value=5.9 Score=38.99 Aligned_cols=132 Identities=10% Similarity=0.068 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (491)
..+..++.---...+.+.+..++..++..- |..-..|......=.+.|..+.+.++|++..+ +.+-+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-----------Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~S 112 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKY-----------PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLS 112 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhC-----------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhH
Confidence 344445544444444455556666555432 22223344444445567788888888888777 34566
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHhhC-CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 190 VSIYNVLINGFVK-CREFDKALGFYDRMVRD-RVK-PDVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 190 ~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~-~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..|...+..+.. .|+.+...+.|+..... |.. -....|...|..-...+++.....+++++.+.
T Consensus 113 vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 113 VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6666666654443 46777777777776553 321 24455667777667777888888888887764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.5 Score=39.65 Aligned_cols=155 Identities=7% Similarity=-0.041 Sum_probs=108.5
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH----HHHHHHHHhcC
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF----NILISGFCRNK 239 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~~ 239 (491)
.-..|+..+|-..++++.+. .+.|..+++.-=++|.-.|+.+.-...++++... ..+|...| ....-++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 34568888888999999884 4678888888889999999999999999888654 13344333 33445567899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL---GCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
-+++|++.-++..+.+-. |..+-.++...+--.|++.++.++..+-... +--.-..-|=...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999887765433 6667777888888899999998887654321 100001112222334556689999999
Q ss_pred HHHHHH
Q 011201 317 LVIDFS 322 (491)
Q Consensus 317 ~~~~~~ 322 (491)
+|+.-.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.27 E-value=6 Score=38.93 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHHhcCChhHHHHHHHHH
Q 011201 205 EFDKALGFYDRMVRDRVKPDVVTFNILI-SGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~~~~~~~A~~~~~~m 251 (491)
..+.|.++++.+.++ -|+...|...- +.+...|++++|++.|++.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 344455555555443 34444333221 2333445555555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.62 Score=41.55 Aligned_cols=76 Identities=8% Similarity=0.115 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCChhhHHHHH
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIE-----LGCEFSSVTCEILV 302 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ll 302 (491)
+..++..+...|+++.+.+.++++...... +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 334444445555555555555555544333 444555555555555555555555554433 34555544444444
Q ss_pred HH
Q 011201 303 DG 304 (491)
Q Consensus 303 ~~ 304 (491)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.1 Score=39.80 Aligned_cols=140 Identities=12% Similarity=-0.030 Sum_probs=88.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011201 301 LVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRK 380 (491)
Q Consensus 301 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 380 (491)
-.+.|.+.|++..|..-|+.....= -|...-+.++...... .-..+++.+..+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-------------~~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-------------EYRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-------------hccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 3467788888888888877754320 0011111111111111 124566777788889999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH-HHHHHH
Q 011201 381 GVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRK-EGENLV 458 (491)
Q Consensus 381 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~-~A~~~~ 458 (491)
+.+|++...+.++.+ ..|....-.=..+|...|+++.|+..|+++.+. .|+ ...-+.|+.+--+..... ...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888863 346666666677888889999999999988885 444 444444554444444433 447788
Q ss_pred HHHHHC
Q 011201 459 NEMLDE 464 (491)
Q Consensus 459 ~~m~~~ 464 (491)
..|...
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 888643
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.84 Score=35.06 Aligned_cols=94 Identities=10% Similarity=0.007 Sum_probs=62.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC--HHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS--VSIY 193 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 193 (491)
.-+++..|+.+.|++.|.+.+.. +|....+||.-..++.-.|+.++|++-+++..+..|.+-. ..+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-----------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-----------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-----------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence 44567778888888888776543 3555677888888888888888888888887776554311 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDR 220 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~ 220 (491)
..-...|-..|+.+.|..-|+..-+.|
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 333445666777777777777666554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.4 Score=44.79 Aligned_cols=216 Identities=12% Similarity=0.084 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
.+......+.+.|++++|...+-+.... ..| ..+|.-|....+..+--.+++.+.+.|+. +...-..|+.+|
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncY 441 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCY 441 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHH
Confidence 3344455566789999998777655432 123 23566777778888888899999998876 677778899999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 315 (491)
.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|..+-.+... .......+++ ..+++++|+
T Consensus 442 iKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl 510 (933)
T KOG2114|consen 442 IKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEAL 510 (933)
T ss_pred HHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHH
Confidence 99999998877776554 3322 11134566777777877877766555432 3444444444 678899999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcCChHHHHHHHHH
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLI-----EGLRRLRKGVEASGLMEK 390 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~ 390 (491)
+.++.+.-....+....|... +. ....++-.+++-+.......++.......+ ....-.+++.....+++.
T Consensus 511 ~yi~slp~~e~l~~l~kyGk~---Ll-~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~ 586 (933)
T KOG2114|consen 511 RYISSLPISELLRTLNKYGKI---LL-EHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLES 586 (933)
T ss_pred HHHhcCCHHHHHHHHHHHHHH---HH-hhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHH
Confidence 998765321111111122211 11 234555555555544432222222222211 222344667777777776
Q ss_pred HHHC
Q 011201 391 MLKE 394 (491)
Q Consensus 391 m~~~ 394 (491)
|.+.
T Consensus 587 ~~E~ 590 (933)
T KOG2114|consen 587 MSEI 590 (933)
T ss_pred HHhc
Confidence 7663
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.92 E-value=4.5 Score=36.16 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=34.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
.....|++.+|..+|+......-+ +...--.++.+|...|+.+.|..++..+-
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 455667777777777776665333 34555566677777777777777776654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.91 E-value=4.8 Score=36.51 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 296 VTCEILVDGLCNEGRVL---KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLI 372 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 372 (491)
.++..++.+|...+..+ +|.++++.+...... ...++..-+..+.+.++.+.+.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 44556667777666544 444555555433222 2333445556666678888888888888775321 233444444
Q ss_pred HHH---HhcCChHHHHHHHHHHHHCCCCCCHH-HHH-HHHH---HHHhcCC------hHHHHHHHHHHHH-CCCCCCHHH
Q 011201 373 EGL---RRLRKGVEASGLMEKMLKEGILPDSV-TFN-CLLE---DLCDVGR------TVDADRLRLLAST-KGLDPDGMT 437 (491)
Q Consensus 373 ~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~-~ll~---~~~~~g~------~~~a~~~~~~~~~-~g~~p~~~~ 437 (491)
..+ ... ....+...+..+....+.|... ... .++. ...+.++ ++....+++.+.+ .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 443 332 3345666666665554554443 111 1111 1122111 3334444443322 122223332
Q ss_pred ---HHHH----HHHHHhcCCHHHHHHHHHHHH
Q 011201 438 ---YHIL----VSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 438 ---~~~l----i~~~~~~g~~~~A~~~~~~m~ 462 (491)
..++ ...+.+.+++++|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2222 234557899999999998543
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.22 Score=30.30 Aligned_cols=39 Identities=8% Similarity=0.064 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVL 196 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 196 (491)
++..+...|.+.|++++|+++|+++.+.. +.|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence 45667777777777777777777777753 3445555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.67 E-value=6.6 Score=37.30 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=92.2
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH--HH
Q 011201 163 AFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG--FC 236 (491)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~ 236 (491)
.+-+.+++.+|.++|.++-+.....|. ....+.++++|.. ++.+.....+..+.+. .| ...|-.+..+ +.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 355789999999999999875322222 2335566777765 4566666666666554 22 2334444443 34
Q ss_pred hcCChhHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC----CCCChhhH
Q 011201 237 RNKKFDLALGLFREMREK--GCNP------------NVVSFNTLIRGFFGERKFDEGVNMAYEMIELG----CEFSSVTC 298 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~--g~~p------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~ 298 (491)
+.+++++|.+.+..-..+ +..+ |-..=+..+..+...|++.++..+++++...= ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899999888776654 3222 22223456778889999999999998887543 34788888
Q ss_pred HHHHHHHHh
Q 011201 299 EILVDGLCN 307 (491)
Q Consensus 299 ~~ll~~~~~ 307 (491)
+.++-.+++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 886666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.86 Score=40.66 Aligned_cols=76 Identities=21% Similarity=0.119 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK-----EGILPDSVTFNCLL 407 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll 407 (491)
+..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 455555666666666666666666655433 566666666666666666666666665544 26666665555444
Q ss_pred HH
Q 011201 408 ED 409 (491)
Q Consensus 408 ~~ 409 (491)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.54 E-value=7.5 Score=37.51 Aligned_cols=77 Identities=21% Similarity=0.132 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 011201 367 ACTTLIEGLRRLRKGVEASGLMEKMLKEGIL-PDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP-DGMTYHILVS 443 (491)
Q Consensus 367 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~ 443 (491)
+-..+..++.+.|+.++|++.+++|.+..-. -+......|+.++...+.+.++..++.+..+...+. -..+|+..+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3345667777999999999999999875321 134466788999999999999999998876543322 2455665443
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.40 E-value=6.1 Score=36.06 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCC
Q 011201 277 DEGVNMAYEMIELGCEFSSVTCEILVDGLCN--EG----RVLKACELVIDFSRRG 325 (491)
Q Consensus 277 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~ 325 (491)
++.+.+++.|.+.|..-+..+|-+....... .. ...+|..+++.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 3445566666666666555555443222222 11 2344555666665543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.37 Score=29.31 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=6.1
Q ss_pred HHhcCChhHHHHHHHHH
Q 011201 235 FCRNKKFDLALGLFREM 251 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m 251 (491)
|.+.|++++|.++|++.
T Consensus 11 ~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333333333333333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.7 Score=36.30 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGCNPN--VVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.+|+.....|++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445556666666666666666666665533222 2345556666666666666666665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.21 E-value=4 Score=33.39 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=9.9
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCC
Q 011201 253 EKGCNPNVVSFNTLIRGFFGERK 275 (491)
Q Consensus 253 ~~g~~p~~~~~~~li~~~~~~g~ 275 (491)
+.|+.|+...+..+|..+.+.|+
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.18 E-value=4.8 Score=34.20 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
|.++.+||-+.--+...|+++.|.+.|+...+.. ..-+-...|.-|..| --|++.-|.+-|...-+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 6667778888777888888888888888777652 111222223222222 346777777766666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.18 E-value=3.8 Score=33.08 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=30.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
..-.+.++.+++..+++.+.......+...++.. ..+++.|+|.+|..+|+++.+.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 3344556666666666666655322222333332 3355667777777777776554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.06 E-value=6.9 Score=35.72 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCC----HHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCCH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFG--ERK----FDEGVNMAYEMIELGC---EFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~g~~ 311 (491)
+++.+.+++.|.+.|+.-+..+|-+....... ..+ ...+..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888899999998887777664333332 333 4578889999998753 2345566666543 33333
Q ss_pred ----HHHHHHHHHHHhCCCCC
Q 011201 312 ----LKACELVIDFSRRGVLP 328 (491)
Q Consensus 312 ----~~a~~~~~~~~~~~~~~ 328 (491)
+.++++++.+.+.|+..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~k 176 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKK 176 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 34555666666655543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.31 Score=28.10 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
+|+.|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778889999999999999998854
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.53 E-value=4.8 Score=32.53 Aligned_cols=119 Identities=21% Similarity=0.168 Sum_probs=70.9
Q ss_pred HHHHHHHH---HHHhcCCHHHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 191 SIYNVLIN---GFVKCREFDKALGFYDRMVRDRVKPDVVTFN-ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 191 ~~~~~li~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
.+.+.||. .-.+.++.+++..+++.+.-. .|...... .-...+.+.|+|.+|..+|+++.+.+ |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 33444444 345668999999999988764 34333222 22334678999999999999988764 334444555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
+..|....+-..-..+-+++.+.+..|+. ..++..+....+...|..
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 55555544434444445556666644433 345555555555555444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=11 Score=36.34 Aligned_cols=161 Identities=6% Similarity=0.043 Sum_probs=88.3
Q ss_pred HHH--HHHHHHHHhcC-----ChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHc---------CChhHH
Q 011201 110 TTF--LFIVRSLASSY-----RFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKA---------NRMNDG 173 (491)
Q Consensus 110 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a 173 (491)
..| ...+++..... ..+.|..+|.+..... -..|.....|..+..++... ....+|
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~--------~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS--------DIQTLKTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc--------cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 455 55555555532 3466778888876211 01244455665555444332 234455
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011201 174 LLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFDLALGLFREMR 252 (491)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~ 252 (491)
.+.-++..+.. +-|..+...+..+..-.++++.|..+|++....+ || ..+|......+.-+|+.++|.+.+++..
T Consensus 324 ~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 324 LELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666653 4566666666666666777888888888776643 33 3344444444555778888888877755
Q ss_pred HcCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHH
Q 011201 253 EKGCNPNV---VSFNTLIRGFFGERKFDEGVNMAYE 285 (491)
Q Consensus 253 ~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~ 285 (491)
+. .|.. ......+..|+. ..+++++++|.+
T Consensus 400 rL--sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 400 QL--EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred cc--CchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 54 2222 122222334443 334555555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.46 E-value=1.3 Score=39.64 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDG--RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
...++..-....+++.++..+-+++..... .++...+ +.+..+. .-+.++++.++..=++-|+-||.++++.+|+.
T Consensus 67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~ 144 (418)
T KOG4570|consen 67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDS 144 (418)
T ss_pred hhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHH
Confidence 344455555577889999888888764211 1222222 2333333 34677999999888889999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 011201 235 FCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~ 254 (491)
+.+.+++.+|.++.-.|...
T Consensus 145 flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 145 FLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHhcccHHHHHHHHHHHHHH
Confidence 99999999999998887765
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.36 E-value=7.3 Score=34.25 Aligned_cols=202 Identities=11% Similarity=0.051 Sum_probs=104.1
Q ss_pred CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHHc---CCC-
Q 011201 186 GRPSVSIYNVLINGF-VKCREFDKALGFYDRMVRDRVKPDVV---TFNILISGFCRNKKFDLALGLFREMREK---GCN- 257 (491)
Q Consensus 186 ~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~- 257 (491)
..||+..-|..-..- .+...+++|+.-|++..+...+-... ....+|....+.+++++..+.|.+|... .+.
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 356665443322211 23456788888888876643222222 2344567777788888888777777532 111
Q ss_pred -CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---
Q 011201 258 -PNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL-----GCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLP--- 328 (491)
Q Consensus 258 -p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--- 328 (491)
-+..+.|.++.--....+.+...++|+.-.+. +-+.--.|-.-+...|...|++.+..+++.++.+..-.-
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 12344566666555555555555555433221 001111233456666777777777777777765442111
Q ss_pred -C-------HhhHHHHHHHHHcCCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCChHHHHHHH
Q 011201 329 -K-------DFDYFGLVEKLCGEGNAGIALEVVDELWKK-GNLPSVIACTTLIEGL-----RRLRKGVEASGLM 388 (491)
Q Consensus 329 -~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~-----~~~g~~~~a~~~~ 388 (491)
| ..+|..=|.+|....+-.....++++.... .-.|.+.... .|+-| .+.|++++|..-|
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHH
Confidence 1 124555566666666666666666665442 2223443332 23222 3456666655433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.0088 Score=48.14 Aligned_cols=129 Identities=9% Similarity=0.035 Sum_probs=66.6
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGR 415 (491)
Q Consensus 336 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 415 (491)
+|..+.+.+..+....+++.+...+...+....+.++..|++.++.++.+++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566667777777777776554556677777777777776666666666511 11222344555555666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 011201 416 TVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKS 486 (491)
Q Consensus 416 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 486 (491)
++++..++.++.... . .+..+...+++++|.+++.+. .+...|..+++.|...++.
T Consensus 86 ~~~a~~Ly~~~~~~~---~------al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---E------ALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHT---T------CSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHH---H------HHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCcc
Confidence 666555544322211 0 000122333444444333322 3456677777766665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.31 E-value=5.4 Score=32.59 Aligned_cols=20 Identities=5% Similarity=0.004 Sum_probs=9.6
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 011201 374 GLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 374 ~~~~~g~~~~a~~~~~~m~~ 393 (491)
+-.+.|++.+|.++|.++..
T Consensus 176 Aa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccchHHHHHHHHHHHc
Confidence 33444555555555554444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.23 E-value=2 Score=42.01 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=20.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011201 202 KCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFRE 250 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 250 (491)
+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHh
Confidence 3455555544443321 344455555555555555555555443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.19 E-value=8.3 Score=34.51 Aligned_cols=119 Identities=5% Similarity=-0.046 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHH
Q 011201 364 SVIACTTLIEGLRR-LR-KGVEASGLMEKMLKE-GILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK-GLDPDGMTYH 439 (491)
Q Consensus 364 ~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~ 439 (491)
|..+...++..... .+ ....-.++.+-+... |-.++..+...++..+++.+++.+-.++|+..... +...|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 44555555555443 11 222233333333333 45677788888888888888888888888876654 5566888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHHh
Q 011201 440 ILVSGYTRENRRKEGENLVNE-----MLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 440 ~li~~~~~~g~~~~A~~~~~~-----m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
.+|+.-...|+..-..++.++ +++.|+..+...-..+-+.+.+
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 888888888888766666654 2344566666655555555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.17 E-value=5.7 Score=32.54 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=15.0
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 011201 213 YDRMVRDRVKPDVVTFNILISGFCRNKKFD 242 (491)
Q Consensus 213 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 242 (491)
++.+.+.++.|+...|..+++.+.+.|++.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333444455555555555555555555433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=12 Score=35.89 Aligned_cols=116 Identities=9% Similarity=-0.029 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011201 241 FDLALGLFREMREK-GCNPN-VVSFNTLIRGFF---------GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG 309 (491)
Q Consensus 241 ~~~A~~~~~~m~~~-g~~p~-~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 309 (491)
.+.|+.+|.+.... .+.|+ ...|..+..++. ...+..+|.++-++..+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 45667777776621 23333 233333322221 122334555555555555432 5555555555555566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 310 RVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
+++.|..+|++....+.. ...+|........-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 666666666666554332 122233333333445666666666666444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.89 E-value=9.8 Score=34.69 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=109.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCH
Q 011201 201 VKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNV----VSFNTLIRGFFGERKF 276 (491)
Q Consensus 201 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~ 276 (491)
-..|++.+|-..++++.+.- +-|...++--=++|.-.|+.+.-...++++... ..+|. ..-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34678888888888887753 447777887778888999999988888888765 22333 2233445566788999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHcCCCHhHHHHHH
Q 011201 277 DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR---GVLPKDFDYFGLVEKLCGEGNAGIALEVV 353 (491)
Q Consensus 277 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 353 (491)
++|++.-++..+.+ +.|...-.++...+-..|+..++.++..+-... +...-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888765 336677777888888899999998877653321 11112233445555667779999999999
Q ss_pred HHHH
Q 011201 354 DELW 357 (491)
Q Consensus 354 ~~m~ 357 (491)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8643
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.77 E-value=17 Score=37.25 Aligned_cols=59 Identities=10% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhhC
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE-------FDKALGFYDRMVRD 219 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~ 219 (491)
.+|-.|.++|.+++|.++........ ......+-..+..|+...+ -++...-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~--~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQF--QKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS---TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhh--cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 45667889999999999996666543 3444556667777766532 23555556655544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.62 E-value=2.1 Score=35.66 Aligned_cols=95 Identities=16% Similarity=0.038 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC----HH
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD--SVTFNCLLEDLCDVGRTVDADRLRLLASTK---GLDPD----GM 436 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~p~----~~ 436 (491)
..+..+...|++.|+.++|.+.|.++.+....+. ...+..+|+.....+++..+.....++... |-..+ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455566666666777777776666666533322 234455566666666666666665544332 11111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
.|..+ .+...|++.+|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 22222 2345678888888776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.44 E-value=17 Score=36.69 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 203 CREFDKALGFYDRMVR-------DRVKPDVVTFNILISGFCRNK-----KFDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 203 ~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~~-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
..+.+.|+..|+...+ .| +....+-+..+|.+.. +.+.|+.++.+..+.|.. +....-..+.-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYET 337 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHc
Confidence 3455555555555544 22 2223344444444422 334455555555554432 222222221111
Q ss_pred Hc-CCCHHHHHHHHHHHHHcC
Q 011201 271 FG-ERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 271 ~~-~g~~~~a~~~~~~m~~~~ 290 (491)
.. ..+...|.++|...-+.|
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCccccHHHHHHHHHHHHHcC
Confidence 11 123445555555555554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.55 Score=27.01 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDR 215 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~ 215 (491)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.69 E-value=6.6 Score=31.24 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=32.7
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 011201 165 VKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDR 220 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 220 (491)
...++.+++..+++.+.-.....+...++-.. .+...|+|++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 34677777777777776653223333444333 3566777777777777776653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=13 Score=33.77 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=74.3
Q ss_pred CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 329 KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR-KGVEASGLMEKMLKEGILPDSVTFNCLL 407 (491)
Q Consensus 329 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll 407 (491)
+..+-...+.++++.++ +.+...+-.+.+. ++...-...+.++.+.+ ....+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444455555555555 3344444444432 23344444445554442 23455555555553 24555666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 408 EDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSN 482 (491)
Q Consensus 408 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 482 (491)
.++.+.|+. .+...+-...+.+ + .....+.++...|.. +|...+.++.+. .||..+-...+.+|.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 677776663 4444444444432 2 233566777777774 677777777743 3577766666666643
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.58 E-value=12 Score=33.46 Aligned_cols=115 Identities=5% Similarity=0.045 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK-C-REFDKALGFYDRMVRD-RVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~-~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
+.+|+.+|+........-.|..+-..|++.... . .....-.++.+-+... |-.++..+...++..+++.+++.+-++
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 445555555221111122355555555555554 1 1223333344433322 345566666666777777777777777
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011201 247 LFREMREK-GCNPNVVSFNTLIRGFFGERKFDEGVNMAY 284 (491)
Q Consensus 247 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 284 (491)
+++..... +..-|...|..+|+...+.|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77665544 444466667777777777777654444433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.11 E-value=5.6 Score=29.21 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 383 EASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 443 (491)
+..+-++.+....+.|+.....+.+++|.+.+++..|.++++.++.+. ......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455555566666677777777777777777777777777777766542 222335665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.55 Score=46.98 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=4.4
Q ss_pred hHHHHHHHHHhc
Q 011201 297 TCEILVDGLCNE 308 (491)
Q Consensus 297 ~~~~ll~~~~~~ 308 (491)
+|..=|+.+|+.
T Consensus 840 afgF~is~L~kL 851 (1102)
T KOG1924|consen 840 AFGFNISFLCKL 851 (1102)
T ss_pred hhccchHHHHhh
Confidence 333333333333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.60 E-value=9.1 Score=30.46 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=42.7
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011201 191 SIYNVLINGF---VKCREFDKALGFYDRMVRDRVK-PDVVTFNILISGFCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 191 ~~~~~li~~~---~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 255 (491)
.+.+.||+.. ...++.+++..+++.|.-.... +...++-.. .+...|++++|.++|+++.+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 3344444433 3478999999999988654221 233344433 3678999999999999999875
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.53 E-value=13 Score=32.28 Aligned_cols=207 Identities=8% Similarity=0.013 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..|.....+|....++++|...+.+..+.. .-+..-|. ..+.++.|.-+.++|.+. .--+..|+--...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y--Ennrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 456667778888888998888777766432 12222121 123345566666666543 1123355666778
Q ss_pred HHhcCChhHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 235 FCRNKKFDLALGLFREMREK--GCNPNV--VSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~--g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
|..+|..+.|-..+++.-+. .+.|+. ..|..-+......++...|.++ +..+-..+.+...
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEK 165 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHH
Confidence 88888888887777765432 233332 1222222223333333333333 2333344555555
Q ss_pred HHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChH
Q 011201 311 VLKACELVIDFSR----RGVLPK-DFDYFGLVEKLCGEGNAGIALEVVDELWKKG---NLPSVIACTTLIEGLRRLRKGV 382 (491)
Q Consensus 311 ~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~ 382 (491)
+++|-..+..-.. -.-.++ ...|...|-.|.-..|+..|.+.++.-...+ -.-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 5555443332111 000111 1234455555666667777777777744322 1124556666666663 45655
Q ss_pred HHHHHH
Q 011201 383 EASGLM 388 (491)
Q Consensus 383 ~a~~~~ 388 (491)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.27 E-value=27 Score=35.39 Aligned_cols=181 Identities=17% Similarity=0.116 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHH----HH-HHhcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHc
Q 011201 205 EFDKALGFYDRMVRDRVKPDVVTFNILI----SG-FCRNKKFDLALGLFREMRE-------KGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~li----~~-~~~~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~ 272 (491)
+...|.++++...+.| +...-..+. .+ +....|.+.|+..|+.+.+ .| +......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4455666666665554 222222221 22 4456788888888888766 55 34456666666666
Q ss_pred CC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--cCC
Q 011201 273 ER-----KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN-EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLC--GEG 344 (491)
Q Consensus 273 ~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g 344 (491)
.. +.+.|+.++...-+.|.. +....-..+..... ..+...|.++|....+.|.... .-+.+++.... -..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A-~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA-IYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCCcCC
Confidence 43 567788888888887743 33332222222222 2457789999988888875531 11222211111 234
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 395 (491)
+.+.|...+++..+.|.. ...--...+..+.. ++.+.+.-.+..+.+.|
T Consensus 379 ~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 678888888888888722 21111122222333 66666666655555544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.22 E-value=4.9 Score=39.53 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=48.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 315 (491)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34566666665554432 445566666666666666666666555432 233444444555544444
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
.+-....+.|.. |.-..+|...|+++++.+++.
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 444333333321 222233444555555555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.89 E-value=5.3 Score=35.93 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011201 380 KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRL 424 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 424 (491)
+.++++.++..=+.-|+-||..+++.+|+.+.+.+++.+|..+..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt 159 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVT 159 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHH
Confidence 333444444444444555555555555555555555544444433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.80 E-value=24 Score=34.29 Aligned_cols=180 Identities=13% Similarity=0.031 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
..|....-+++..+..+..+.-+..+-.+|..-| -+-..|..++.+|... .-+.-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4566667788888888888888888888888764 3667788888888877 567777888888777664 44444445
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 011201 267 IRGFFGERKFDEGVNMAYEMIELGCEF-----SSVTCEILVDGLCNEGRVLKACELVIDFSRR-GVLPKDFDYFGLVEKL 340 (491)
Q Consensus 267 i~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~ 340 (491)
..-|-+ ++.+.+..+|.+....-+.- -...|..+...- ..+.+....+...+.+. |...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 544444 77778888887776542220 113444444321 34666677776666543 4433444555566777
Q ss_pred HcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 341 CGEGNAGIALEVVDELWKKGNLPSVIACTTLIEG 374 (491)
Q Consensus 341 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 374 (491)
....++++|++++..+.+..-+ |...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 7888888888888877665432 44444444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.74 E-value=5.4 Score=33.60 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHH
Q 011201 242 DLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL---GCEFSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 242 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a 314 (491)
+.|.+.|-++...+.--++.....|.. |....+.++++.++.+..+. +-.+|...+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444555544443323333322222 22344555555555544432 2244555555555555555555554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.5 Score=25.87 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 435 GMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 435 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
..+++.|...|...|++++|.+++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888899999999999999888764
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.77 E-value=1.1 Score=25.40 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKAL 210 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~ 210 (491)
+-+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345666777777777777776664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.49 E-value=2.2 Score=23.82 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKL 183 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (491)
.+|..+..+|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 34566666677777777777777766654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.37 E-value=1.1 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 436 MTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
..|..+..+|...|++++|++.|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.35 E-value=38 Score=34.85 Aligned_cols=64 Identities=8% Similarity=-0.079 Sum_probs=37.8
Q ss_pred HhcCChHHHHHHHHHHHHCCC-C-----CCHHHHHHHHHH--HHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 011201 411 CDVGRTVDADRLRLLASTKGL-D-----PDGMTYHILVSG--YTRENRRKEGENLVN--------EMLDEGFIPDLATYN 474 (491)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~g~-~-----p~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~ 474 (491)
+-.+++..|....+.+.+..- . .....+..++.| +-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456888889988888775321 1 112233333333 334699999999997 444444444444443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=87.08 E-value=23 Score=34.25 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCChhHHHHHH
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVV--TFNILISGFCRNKKFDLALGLF 248 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~A~~~~ 248 (491)
.+.+...+..|+.+- .+.+.+.|..|+.. .....+...++.|+.+.+..++
T Consensus 36 ~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 36 ISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred CCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 344455556666543 33333445444332 1123344555666665544444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.03 E-value=42 Score=35.09 Aligned_cols=225 Identities=14% Similarity=0.003 Sum_probs=122.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC----H---HHHHHHHH-HHHcCCCHHHHHHHHHHHHHc----CCCCChhhHHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPN----V---VSFNTLIR-GFFGERKFDEGVNMAYEMIEL----GCEFSSVTCEILVD 303 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~----~---~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~ 303 (491)
....++++|..+..++...-..|+ . ..|+.+-. .....|+++++.++.+...+. -.......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456789999999888765422222 1 23444432 334578899999888876643 23345566677778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhH---HHH--HHHHHcCCCHhH--HHHHHHHHHHc---CC---CCCHHHHHH
Q 011201 304 GLCNEGRVLKACELVIDFSRRGVLPKDFDY---FGL--VEKLCGEGNAGI--ALEVVDELWKK---GN---LPSVIACTT 370 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l--i~~~~~~g~~~~--a~~~~~~m~~~---~~---~~~~~~~~~ 370 (491)
+..-.|++++|..+..+..+..-.-+...+ ..+ ...+...|+... .+..|...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999999988876655322233222 222 233445664333 23333333221 10 112344555
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 011201 371 LIEGLRRL-RKGVEASGLMEKMLKEGILPDSVTF--NCLLEDLCDVGRTVDADRLRLLASTKGLDP----DGMTYHILVS 443 (491)
Q Consensus 371 li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p----~~~~~~~li~ 443 (491)
+..++.+. +...++..-+.-.......|-...+ ..++......|++++|...++++......+ +...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555542 1122222223322222222222222 366777888999999999888776543333 2222222333
Q ss_pred H--HHhcCCHHHHHHHHHH
Q 011201 444 G--YTRENRRKEGENLVNE 460 (491)
Q Consensus 444 ~--~~~~g~~~~A~~~~~~ 460 (491)
. -...|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2356888887777665
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.03 E-value=28 Score=36.78 Aligned_cols=26 Identities=8% Similarity=0.356 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
|..|+..|...|+.++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 56677777777777777777777655
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.88 E-value=6.5 Score=28.55 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 383 EASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
++.+-++.+....+.|+.....+.+++|.+.+++..|.++++-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444555555555666666666666666666666666666665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.77 E-value=0.93 Score=25.69 Aligned_cols=20 Identities=15% Similarity=0.474 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHcCCCHHHH
Q 011201 260 VVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 260 ~~~~~~li~~~~~~g~~~~a 279 (491)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.46 E-value=2.7 Score=23.34 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKL 183 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (491)
++..+...+.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666677777777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=86.45 E-value=8 Score=30.74 Aligned_cols=80 Identities=9% Similarity=0.170 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDG----RPSVSIYNVLINGFVKCRE-FDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
.++.++......+++...+.+++.+...... ..+-..|+.++.+..+... ---+..+|+-|.+.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3455555555555555555555555322100 1233344444444433333 2233444444444444444444444
Q ss_pred HHHHH
Q 011201 231 LISGF 235 (491)
Q Consensus 231 li~~~ 235 (491)
+|.++
T Consensus 121 li~~~ 125 (145)
T PF13762_consen 121 LIKAA 125 (145)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.11 E-value=1.4 Score=24.52 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 437 TYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 437 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.|..+...|.+.|++++|.+.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666677777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=85.58 E-value=9.1 Score=33.95 Aligned_cols=89 Identities=11% Similarity=-0.012 Sum_probs=58.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN-- 307 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-- 307 (491)
.=|.++++.|+|.+++...-+--+.--+........-|-.|.+.|....+.++-..-....-.-+...|..+++.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 457888888888888877665544322223445556666778888888887777766554323344457777666654
Q ss_pred ---cCCHHHHHHHH
Q 011201 308 ---EGRVLKACELV 318 (491)
Q Consensus 308 ---~g~~~~a~~~~ 318 (491)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 58888887776
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.43 E-value=9.7 Score=32.13 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhcCCHH
Q 011201 436 MTYHILVSGYTRENRRK 452 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~ 452 (491)
..+..|+..|.+.|+++
T Consensus 179 eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 179 EILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHHHhcchh
Confidence 33333333333333333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.43 E-value=2.3 Score=25.04 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=85.40 E-value=1.7 Score=43.72 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHcCCCH
Q 011201 220 RVKPDVVTFNILISGFCRNKKFDLALGLFREMRE---KGCNPNVVSFNTLIRGFFGERKF 276 (491)
Q Consensus 220 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~ 276 (491)
+++|+..+.+....-..+...+..-+++.--+-. .|-+ |..+|.-=|+.+|+..+.
T Consensus 796 niKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSr-Na~afgF~is~L~kL~dT 854 (1102)
T KOG1924|consen 796 NIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSR-NAQAFGFNISFLCKLRDT 854 (1102)
T ss_pred hcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccc-cchhhccchHHHHhhccc
Confidence 3556655444333333333334333333322211 1222 555555555555555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.76 E-value=0.39 Score=38.46 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=62.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 370 TLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTREN 449 (491)
Q Consensus 370 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 449 (491)
.+|..+.+.+..+....+++.+...+..-+....+.++..|++.+..++..++++ .. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~----~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS----NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS----SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc----cccCHHHHHHHHHhcc
Confidence 3566777788899999999999987666678899999999999988888888775 11 1122345666777778
Q ss_pred CHHHHHHHHHHH
Q 011201 450 RRKEGENLVNEM 461 (491)
Q Consensus 450 ~~~~A~~~~~~m 461 (491)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 887777777765
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.52 E-value=57 Score=34.24 Aligned_cols=225 Identities=11% Similarity=-0.065 Sum_probs=116.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChh-------hHHHHHH-HHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 011201 201 VKCREFDKALGFYDRMVRDRVKPDVV-------TFNILIS-GFCRNKKFDLALGLFREMREK----GCNPNVVSFNTLIR 268 (491)
Q Consensus 201 ~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~-~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~li~ 268 (491)
....++++|..++.++...-..|+.. .|+.|-. .....|++++|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34578888888888765542222221 3333322 234568888888887776553 23345667777778
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH-----HHHHhcCCHHHHH--HHHHHHHhC-----CC-CCCHhhHHH
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILV-----DGLCNEGRVLKAC--ELVIDFSRR-----GV-LPKDFDYFG 335 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~~~~~~g~~~~a~--~~~~~~~~~-----~~-~~~~~~~~~ 335 (491)
+..-.|++++|..+..+..+..-..+...+.... ..+...|+...+. ..+...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999998888776553333443333222 2344556333322 223222211 10 111233444
Q ss_pred HHHHHHcC-CCHhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 011201 336 LVEKLCGE-GNAGIALEVVDELWKKGNLPSVIAC--TTLIEGLRRLRKGVEASGLMEKMLKEGILP----DSVTFNCLLE 408 (491)
Q Consensus 336 li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~ 408 (491)
+..++.+. +...++..-++--......+-...+ ..|+..+...|+.++|...++++......+ +..+-...++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555441 1122222222222222222222222 256777788899999999888887653222 2222222222
Q ss_pred H--HHhcCChHHHHHHHHH
Q 011201 409 D--LCDVGRTVDADRLRLL 425 (491)
Q Consensus 409 ~--~~~~g~~~~a~~~~~~ 425 (491)
. -...|+..++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2345676666655443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.47 E-value=9.8 Score=27.66 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 347 GIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLE 408 (491)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 408 (491)
-++.+-++.+......|++....+.+.+|.+.+++.-|.++|+-.+.+ +..+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 345555566666666677777777777777777777777777665543 2223334544443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.44 E-value=7.5 Score=28.57 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 208 KALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666666666666655544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.31 E-value=54 Score=33.82 Aligned_cols=105 Identities=6% Similarity=0.098 Sum_probs=59.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNV 195 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 195 (491)
++.+.+.+.+++|+...+........ -.........+..+...|++++|-...-.|.. -+..-|.-
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~---------~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~ 428 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEER---------FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWEL 428 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccc---------cchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHH
Confidence 56667777888887776654332110 01235566777788888888888777666654 35555655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR 237 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 237 (491)
.+..+...++...... -+.......+...|..++..+..
T Consensus 429 ~V~~f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 429 WVFKFAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHhccccccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 5555555555433222 22222222345566666666655
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.09 E-value=97 Score=36.60 Aligned_cols=318 Identities=10% Similarity=-0.034 Sum_probs=160.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHH
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIY 193 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 193 (491)
.+..+-.+++.+.+|...++.-..... ........+..+...|...+++|....+...-.. .|+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek--------~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl~-- 1453 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK--------EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSLY-- 1453 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc--------hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccHH--
Confidence 445566677888888888887411110 0111223344555589999999888777664222 23332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHc
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL-IRGFFG 272 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~ 272 (491)
.-|......|+++.|...|+.+.+.+. +...+++-++......|.++.++-..+-.... ..+....|+.+ +.+--+
T Consensus 1454 -~qil~~e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~ 1530 (2382)
T KOG0890|consen 1454 -QQILEHEASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWR 1530 (2382)
T ss_pred -HHHHHHHhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhh
Confidence 344556677999999999999987642 23667887777777778888777766555443 12233333333 344467
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHhc--CCHHHHHHHHHHHHhCCCCC---------CHhhHHHHHHH
Q 011201 273 ERKFDEGVNMAYEMIELGCEFSSVTCEIL--VDGLCNE--GRVLKACELVIDFSRRGVLP---------KDFDYFGLVEK 339 (491)
Q Consensus 273 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~~~~~--g~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~ 339 (491)
.++++...+... . . +..+|... .....+. .+.-.-.+.++.+.+.-+.+ =...|..++..
T Consensus 1531 l~qwD~~e~~l~--~-~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kL 1603 (2382)
T KOG0890|consen 1531 LSQWDLLESYLS--D-R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKL 1603 (2382)
T ss_pred hcchhhhhhhhh--c-c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHH
Confidence 777777666655 1 1 12222222 2222111 12111112222222211110 01122222222
Q ss_pred HHcCCCHhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChHHHHHHH-HHHHHCCCCC-----CHHHHHHHH
Q 011201 340 LCGEGNAGIALEVVDELWKKGNLPS------VIACTTLIEGLRRLRKGVEASGLM-EKMLKEGILP-----DSVTFNCLL 407 (491)
Q Consensus 340 ~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p-----~~~~~~~ll 407 (491)
..-.. -....+.. .+..++ ..-|-.-+..-....+..+-+--+ +.+......| -..+|....
T Consensus 1604 H~l~e----l~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsA 1677 (2382)
T KOG0890|consen 1604 HLLLE----LENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSA 1677 (2382)
T ss_pred HHHHH----HHHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 21110 00001110 111111 111221221111111111111111 1111111122 246788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 408 EDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 408 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
+...+.|.++.|...+-...+.+ . ...+-....-+...|+...|+.++++.+..
T Consensus 1678 riaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1678 RIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88778999999988776666654 2 345556677888999999999999988855
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.74 E-value=11 Score=32.24 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD--RVKPDVVTFNILISG 234 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 234 (491)
.+..+..+.+.+++.+++...+.-.+. .+-|......++..||-.|++++|..-++-.-.. ...+-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445566677777777777766655543 1335555666777777777777777666554332 122334455555543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.73 E-value=2.6 Score=23.13 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHh
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKL 183 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (491)
-.+..++.+.|++++|++.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556666777777777777777665
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.95 E-value=34 Score=30.54 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=54.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKL-IDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR-- 237 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 237 (491)
|.++++.|++.+++...-+.-+. ...+| .....-|-.|.+.+.+..+.++-....+..-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 78888888888877654443322 11233 33444566688888888888888777664322344456666655543
Q ss_pred ---cCChhHHHHHH
Q 011201 238 ---NKKFDLALGLF 248 (491)
Q Consensus 238 ---~~~~~~A~~~~ 248 (491)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 57777777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.78 E-value=54 Score=32.66 Aligned_cols=351 Identities=11% Similarity=-0.008 Sum_probs=197.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH-HcCChhHHHHHHHHHHHhcCCC-C
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV-KANRMNDGLLAFEAMRKLIDGR-P 188 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~ 188 (491)
-|......-.+.|..+.+..+|++.+.. .|.....|...+..+. ..|+.+...+.|+......|.. .
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~a-----------ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~ 149 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQA-----------IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFL 149 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchh
Confidence 4566667777788999999999987653 2344455554444333 4677888888999988865543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH---hc------CChhHHHHHHHHHHHc----C
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC---RN------KKFDLALGLFREMREK----G 255 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~---~~------~~~~~A~~~~~~m~~~----g 255 (491)
+...|-..|..-..++++.....+|++.++. ....|+....-|. +. ...+++.++-.....+ -
T Consensus 150 S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~ 225 (577)
T KOG1258|consen 150 SDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITH 225 (577)
T ss_pred ccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhccc
Confidence 5667888888888899999999999999874 2223333322222 11 2233333332222210 0
Q ss_pred CCCCHHHHHHHHHHHH-------------------------cCCCHHHHHHHHHHHHHc---CCC----CChhhHHHHHH
Q 011201 256 CNPNVVSFNTLIRGFF-------------------------GERKFDEGVNMAYEMIEL---GCE----FSSVTCEILVD 303 (491)
Q Consensus 256 ~~p~~~~~~~li~~~~-------------------------~~g~~~~a~~~~~~m~~~---~~~----~~~~~~~~ll~ 303 (491)
.......+..-+..-. ......+....++.-++. .+. .+..+|..-+.
T Consensus 226 ~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLd 305 (577)
T KOG1258|consen 226 SQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLD 305 (577)
T ss_pred ccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhh
Confidence 0011111211111111 111111111222222111 111 23466777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCh
Q 011201 304 GLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGN--LPSVIACTTLIEGLRRLRKG 381 (491)
Q Consensus 304 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~ 381 (491)
.-...|+.+.+.-+++...-.--.-+ ..|-..+.-....|+.+-|..++....+--. .|....+.+.+. -..|++
T Consensus 306 f~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~ 382 (577)
T KOG1258|consen 306 FEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE--ESNGNF 382 (577)
T ss_pred hhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccH
Confidence 77888999998888877653211111 1233344444445888888877776655332 233444444443 345799
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHH
Q 011201 382 VEASGLMEKMLKEGILPDSV-TFNCLLEDLCDVGRTVDAD---RLRLLASTKGLDPDGMTYHILVSG-----YTRENRRK 452 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~---~~~~~~~~~g~~p~~~~~~~li~~-----~~~~g~~~ 452 (491)
+.|..+++...+. + |+.. .-..-+....+.|+.+.+. .++....+.. -+......+.-- +.-.++.+
T Consensus 383 ~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~ 458 (577)
T KOG1258|consen 383 DDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDAD 458 (577)
T ss_pred HHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHH
Confidence 9999999999886 3 5432 2223334456778888877 4444333321 222222333222 23357889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 453 EGENLVNEMLDEGFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 453 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 484 (491)
.|..++.+|.+. +.++...|..+++-+...+
T Consensus 459 ~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 459 LARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 999999999865 4566677777777766555
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.87 E-value=5.8 Score=36.11 Aligned_cols=89 Identities=7% Similarity=-0.043 Sum_probs=51.0
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 011201 338 EKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTV 417 (491)
Q Consensus 338 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 417 (491)
+-|.+.|.+++|+..|..-...... +.+++..-..+|.+..++..|+.-....+..+- --...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 4577888888888888776554321 667777777778887777777666655554210 01222333333333345555
Q ss_pred HHHHHHHHHHH
Q 011201 418 DADRLRLLAST 428 (491)
Q Consensus 418 ~a~~~~~~~~~ 428 (491)
+|.+=++...+
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55555554444
|
|
| >PF14669 Asp_Glu_race_2: Putative aspartate racemase | Back alignment and domain information |
|---|
Probab=81.87 E-value=29 Score=28.99 Aligned_cols=25 Identities=16% Similarity=-0.058 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRL 424 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~ 424 (491)
-...|.....+.+.|.+|.|..+++
T Consensus 181 Cqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 181 CQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3445555666667777777776665
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.75 E-value=37 Score=30.08 Aligned_cols=203 Identities=12% Similarity=0.076 Sum_probs=126.3
Q ss_pred CCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHc---CC
Q 011201 219 DRVKPDVVTFNILISG-FCRNKKFDLALGLFREMREKGCNPNVV---SFNTLIRGFFGERKFDEGVNMAYEMIEL---GC 291 (491)
Q Consensus 219 ~~~~p~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~ 291 (491)
.+-+||+..=|.--.. -.+..+.++|+.-|++..+..-+-... +...+|..+.+.|++++.++.|.+|... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3456676544322211 124458899999999988763322333 3445788999999999999999988632 11
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-
Q 011201 292 --EFSSVTCEILVDGLCNEGRVLKACELVIDFSRR-----GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP- 363 (491)
Q Consensus 292 --~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~- 363 (491)
..+....|.++.......+.+...++++.-++. +-..--.|-+.|...|...|++.+..++++++...--.-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 234566778887777666666666665543221 111122234567788888888888888888887642111
Q ss_pred ---C-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHH----HHHhcCChHHHHH
Q 011201 364 ---S-------VIACTTLIEGLRRLRKGVEASGLMEKMLKE-GILPDSVTFNCLLE----DLCDVGRTVDADR 421 (491)
Q Consensus 364 ---~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~----~~~~~g~~~~a~~ 421 (491)
| ...|..-|..|....+-.+...+|++.+.- .--|.+.....+-. ...+.|.+++|..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 1 356777778888888877878888776543 23455555444332 1334577777653
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.43 E-value=12 Score=31.98 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK--GCNPNVVSFNTLIRGF 270 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~ 270 (491)
.+.-++.+.+.+++.+|+...++-++.... |..+-..+++.+|-.|++++|..-++-.-+. ...+-..+|..+|.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 455677888999999999999887776433 6777888999999999999999887766544 2334567888888876
Q ss_pred H
Q 011201 271 F 271 (491)
Q Consensus 271 ~ 271 (491)
.
T Consensus 83 a 83 (273)
T COG4455 83 A 83 (273)
T ss_pred H
Confidence 3
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.38 E-value=42 Score=30.46 Aligned_cols=234 Identities=11% Similarity=-0.038 Sum_probs=140.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKF----DLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
+|....-..+..+...|. +++...+..+... +|...-...+.++...|+. +++..++..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 566666667777776665 3444444444432 3566666667777777763 4677777776443 3455666
Q ss_pred HHHHHHHHcCCCH-----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011201 264 NTLIRGFFGERKF-----DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVE 338 (491)
Q Consensus 264 ~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 338 (491)
...+.++...+.. ..+.+.+..... .++..+-...+.++++.++ +.+...+-.+.+. ++..+-..-+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5666666554321 233333333332 2355666777788888876 4566666666553 34445556666
Q ss_pred HHHcCC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 011201 339 KLCGEG-NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTV 417 (491)
Q Consensus 339 ~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 417 (491)
++.+.+ +...+...+..+... ++..+-...+.++.+.|+ ..++..+-+..+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666653 244566666666543 367777788888888887 46666666666643 2 234667777888885
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 418 DADRLRLLASTKGLDPDGMTYHILVSGYT 446 (491)
Q Consensus 418 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 446 (491)
+|...+..+.+. .+|..+-...+.++.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 677777777764 246666555555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.72 E-value=50 Score=30.93 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
...+.-+.|+|+...+........ .++...|..+... +.++++++....+++...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 356677888888866665554432 2344455544443 778888888888776653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.52 E-value=5.4 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 436 MTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 436 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777788888888888888888764
|
... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.46 E-value=4.3 Score=24.65 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=13.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.21 E-value=77 Score=32.77 Aligned_cols=151 Identities=10% Similarity=0.140 Sum_probs=92.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRP---SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
-++.+.+.+.+++|+++-+..... .+ -...+...|+.+.-.|++++|-...-.|... +..-|...+..+.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~---~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN---EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFA 434 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC---ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhc
Confidence 467788899999998887765542 34 3566888899999999999999999999865 6677777777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH--------------HH---HcCCCCChhhHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYE--------------MI---ELGCEFSSVTCE 299 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~--------------m~---~~~~~~~~~~~~ 299 (491)
..++......+ +.......+...|..++..+.. .+...-.++..+ .. +.. .-+...-.
T Consensus 435 e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e 509 (846)
T KOG2066|consen 435 ELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLE 509 (846)
T ss_pred cccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHH
Confidence 76665543332 2222122345566666666655 222211111111 00 000 01223334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011201 300 ILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 300 ~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
.|+..|...+++++|.+++-...
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 57778888888888887765443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.04 E-value=35 Score=28.72 Aligned_cols=89 Identities=7% Similarity=-0.004 Sum_probs=61.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKEGILPDSVTFN-----CLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYT 446 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 446 (491)
...+...|++++|+.-++..... +....+. .|.+.....|.+|+|...++...+.++. ......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 45577888888888888877653 2333333 3444667788899998888776665432 233344457788
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 011201 447 RENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~~ 465 (491)
..|+-++|..-|++.+..+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8899999999999888775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.6 bits (210), Expect = 1e-17
Identities = 34/276 (12%), Positives = 81/276 (29%), Gaps = 10/276 (3%)
Query: 176 AFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKA---LGFYDRMVRDRVKPDVVTFNILI 232
A + + A L + + R + +N ++
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVN-MAYEMIELGC 291
G+ R F + + +++ G P+++S+ ++ + + + +M + G
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232
Query: 292 EFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALE 351
+ ++ +L+ + ++ FS LP + L+ + + +
Sbjct: 233 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
Query: 352 VVDELWKKGNLPSV-----IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFN-C 405
+ L L +A + + + + K LK
Sbjct: 293 LHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRA 352
Query: 406 LLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHIL 441
L E + R V R L LD + +L
Sbjct: 353 LRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLL 388
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.9 bits (177), Expect = 1e-13
Identities = 14/160 (8%), Positives = 47/160 (29%), Gaps = 3/160 (1%)
Query: 161 VNAFVKANRMNDGLLAFEAMRKLIDGR--PSVSIYNVLINGFVKCREFDKALGFYDRMVR 218
+ +++ R ++ +YN ++ G+ + F + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 219 DRVKPDVVTFNILISGFCR-NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFD 277
+ PD++++ + R ++ +M ++G + L+
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 278 EGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317
+ V L+ + + + +L
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL 293
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 5e-08
Identities = 14/109 (12%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 383 EASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLL---ASTKGLDPDGMTYH 439
+ + + + + A L ++ K Y+
Sbjct: 110 VEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYN 169
Query: 440 ILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVR 488
++ G+ R+ KE ++ + D G PDL +Y + + + +
Sbjct: 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 491 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.97 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.96 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.94 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.85 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.83 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.81 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.75 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.55 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.54 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.53 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.5 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.48 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.47 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.45 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.42 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.4 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.36 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.32 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.32 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.29 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.03 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.01 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.01 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.0 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.99 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.94 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.94 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.88 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.84 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.83 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.8 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.78 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.78 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.72 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.57 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.46 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.45 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.43 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.32 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.28 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.26 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.23 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.12 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.0 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.92 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.85 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.84 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.8 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.8 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.63 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.58 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.55 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.47 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.34 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.33 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.27 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.26 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.81 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.69 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.61 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.38 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.32 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.23 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.11 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.04 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.72 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.38 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.22 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.18 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.78 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.5 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.43 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.43 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.9 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.37 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.11 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.62 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.12 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.02 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.41 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.75 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.25 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 87.89 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.75 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.22 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.37 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.66 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.73 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.32 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.23 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 83.92 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.9 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.59 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.33 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.96 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.4 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.1 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=287.81 Aligned_cols=381 Identities=10% Similarity=-0.025 Sum_probs=251.7
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+.+|..+.. ..|+..++..++..+.+.|++++|..+++.+... +.+..++..++.+|.+.|
T Consensus 100 ~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 100 YKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY------------NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG------------GTCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc------------ccchhHHHHHHHHHHHHh
Confidence 3457888887764 3467788888888999999999999888877432 223567788888888888
Q ss_pred ChhHHHHHHHHHHHhc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------
Q 011201 169 RMNDGLLAFEAMRKLI--------------DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK------------ 222 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------------ 222 (491)
++++|+++|+++.... +...+..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence 8888888887533211 11235778888888888888888888888887654321
Q ss_pred ----------------------------------------------------------CChhhHHHHHHHHHhcCChhHH
Q 011201 223 ----------------------------------------------------------PDVVTFNILISGFCRNKKFDLA 244 (491)
Q Consensus 223 ----------------------------------------------------------p~~~~~~~li~~~~~~~~~~~A 244 (491)
++..+|+.++.+|.+.|++++|
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 3445555555556666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 245 LGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 245 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
.++|+++.+.+.. +..+|..++.+|.+.|++++|.++++++.+.. ..+..++..++..|.+.|++++|.++|+++.+.
T Consensus 325 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666665554432 45555566666666666666666666655433 235566666667777777777777777766654
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011201 325 GVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFN 404 (491)
Q Consensus 325 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 404 (491)
... +..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|+
T Consensus 403 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 479 (597)
T 2xpi_A 403 DPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLN 479 (597)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 322 4556667777777777777777777776665432 56666777777777777777777777776642 22566677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 405 CLLEDLCDVGRTVDADRLRLLASTK----GLDPD--GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 405 ~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
.++.+|.+.|++++|.++++.+.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ ..+..+|..+..
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 7777777777777777777766554 45565 5667777777777777777777777776543 235667777777
Q ss_pred HHHhcCCccccc
Q 011201 479 GLSNARKSVRQT 490 (491)
Q Consensus 479 ~~~~~g~~~~A~ 490 (491)
+|.+.|++++|.
T Consensus 559 ~~~~~g~~~~A~ 570 (597)
T 2xpi_A 559 VYLHKKIPGLAI 570 (597)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHhCCHHHHH
Confidence 777777777664
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=280.96 Aligned_cols=364 Identities=9% Similarity=-0.036 Sum_probs=316.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 011201 107 HDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (491)
++...|+.++..+.+.|++++|..+++++.... |+ ..++..++.+|.+.|++++|+.+|+++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT-----------GN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY--- 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC-----------CC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc---
Confidence 567789999999999999999999999997532 22 367788999999999999999999998654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRD---------------RVKPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
+++..+++.++.+|.+.|++++|.++|+++... |...+..+|+.++.+|.+.|++++|+++|++|
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578999999999999999999999999953222 22346889999999999999999999999998
Q ss_pred HHcCC----------------------------------------------------------------------CCCHH
Q 011201 252 REKGC----------------------------------------------------------------------NPNVV 261 (491)
Q Consensus 252 ~~~g~----------------------------------------------------------------------~p~~~ 261 (491)
.+.+. .++..
T Consensus 227 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 306 (597)
T 2xpi_A 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSD 306 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHH
T ss_pred HHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHH
Confidence 75432 15777
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLC 341 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 341 (491)
+|+.++.+|.+.|++++|+++|+++.+.+.. +..++..++.+|.+.|++++|.++++++.+... .+..+++.++.+|.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence 8888889999999999999999999877643 778888999999999999999999998886543 36788999999999
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..+|..++.+|.+.|++++|.+
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999886543 68899999999999999999999999999864 3478899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCccccc
Q 011201 422 LRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE----GFIPD--LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 422 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~A~ 490 (491)
+|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 999998864 447899999999999999999999999999876 67888 789999999999999999985
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=270.97 Aligned_cols=214 Identities=11% Similarity=0.058 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 243 LALGLFREMREKGCNPNV-VSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
.+..+.+++.+++..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 345555666666655443 346777777777777777777777777777777777777777777765542100
Q ss_pred HhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 011201 322 SRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSV 401 (491)
Q Consensus 322 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 401 (491)
.+.+++++|.++|++|.+.|+.||..+||++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 0112234455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 402 TFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLS 481 (491)
Q Consensus 402 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 481 (491)
||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred h
Q 011201 482 N 482 (491)
Q Consensus 482 ~ 482 (491)
.
T Consensus 222 s 222 (501)
T 4g26_A 222 S 222 (501)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-33 Score=269.02 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHcCCCCChhhH
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERK---------FDEGVNMAYEMIELGCEFSSVTC 298 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~~~~~~~~~~ 298 (491)
++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 44555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011201 299 EILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRL 378 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 378 (491)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555566666666665555566666666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 379 RKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD 412 (491)
Q Consensus 379 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 412 (491)
|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666655566666666655555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-27 Score=223.21 Aligned_cols=355 Identities=11% Similarity=-0.029 Sum_probs=295.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHH
Q 011201 115 IVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYN 194 (491)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (491)
+...+.+.|++++|...++.+.+.. |.....+..+...+.+.|++++|...++...+.. +.+..+|.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-----------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~ 71 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-----------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHH
Confidence 3566778899999999998887643 4446777888888999999999999999888753 56788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.+...|.+.|++++|.+.|+++.+... .+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|
T Consensus 72 ~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 72 NLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcc
Confidence 999999999999999999999887532 24567889999999999999999999998886433 4567778888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
++++|.+.|+++.+.... +..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|...++
T Consensus 150 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999887533 5778888999999999999999999999887543 56678888899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 355 ELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD 434 (491)
Q Consensus 355 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 434 (491)
+....... +..++..+...|.+.|++++|++.|+++.+.+. -+..+|..+..++.+.|++++|...++.+.+.. +.+
T Consensus 228 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 304 (388)
T 1w3b_A 228 RALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTH 304 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccc
Confidence 88876543 678888899999999999999999999988532 256788889999999999999999999988763 557
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 435 GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 435 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
..+|..+...+.+.|++++|.+.++++.+.. ..+..++..+..++.+.|++++|.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999999999999999999999998542 335678899999999999998875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-26 Score=217.72 Aligned_cols=372 Identities=12% Similarity=0.012 Sum_probs=317.2
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..|...|..+.... +.+...+..+...+...|++++|...++...... |....++..+...+.+.|+
T Consensus 16 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----------p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 16 EAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----------PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CCchHHHHHHHHHHHHCCC
Confidence 34666666655432 2345667788888999999999999999887643 4557899999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 249 (491)
+++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999863 456778999999999999999999999999876422 45567788889999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011201 250 EMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK 329 (491)
Q Consensus 250 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 329 (491)
++.+.... +..+|..+...+.+.|++++|+..|+++.+.+.. +...+..+...+...|++++|...+++..+.... +
T Consensus 160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 99987443 6789999999999999999999999999987643 6778889999999999999999999999877543 5
Q ss_pred HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 330 DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLED 409 (491)
Q Consensus 330 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 409 (491)
..++..+...|.+.|++++|.+.|+++.+.+.. +..+|..+...+.+.|++++|.+.|+++.+.. ..+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 778899999999999999999999999987644 67889999999999999999999999999863 4578899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 011201 410 LCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIP-DLATYNSYMDGLSNARK 485 (491)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~ 485 (491)
+.+.|++++|...++.+.+.. +.+...|..+..+|.+.|++++|.+.|+++.+. .| +...|..+...+...|+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 999999999999999998863 446789999999999999999999999999954 45 45677777777776653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-22 Score=196.96 Aligned_cols=364 Identities=10% Similarity=0.010 Sum_probs=294.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+...+..+...+.+.|++++|..+|+.+.... |....++..+..++...|++++|+..|+++.+.. +
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p 91 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-----------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--M 91 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 45578889999999999999999999998643 4446889999999999999999999999999874 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHH------------HHHHHhcCChhHHHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV---VTFNIL------------ISGFCRNKKFDLALGLFREMR 252 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~l------------i~~~~~~~~~~~A~~~~~~m~ 252 (491)
.+..++..+..+|.+.|++++|.+.|+++.+.... +. ..+..+ ...+.+.|++++|++.|+++.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56889999999999999999999999999876422 33 555555 344889999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 253 EKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 253 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
+.... +...+..+..+|.+.|++++|+++|+++.+... .+..++..+...|...|++++|...++.+.+.... +...
T Consensus 171 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 247 (450)
T 2y4t_A 171 EVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 247 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHH
Confidence 87543 788999999999999999999999999987643 36789999999999999999999999999876433 3334
Q ss_pred HHHH------------HHHHHcCCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 333 YFGL------------VEKLCGEGNAGIALEVVDELWKKGNLPS----VIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 333 ~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
+..+ ...+...|++++|.+.|+++.+.... + ...|..+...+.+.|++++|++.++++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~- 325 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME- 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 4444 78899999999999999999886433 2 4578889999999999999999999998752
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSG------------YTREN-----RRKEGENLVN 459 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~ 459 (491)
..+...|..+..+|...|++++|...++.+.+.. +-+...+..+..+ |...| +.+++.+.++
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~ 404 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYR 404 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHH
Confidence 2368899999999999999999999999998853 2245666666532 33344 6678888888
Q ss_pred HH-HHCC--CCCC-------HHHHHHHHHHHHhcCCcccccC
Q 011201 460 EM-LDEG--FIPD-------LATYNSYMDGLSNARKSVRQTR 491 (491)
Q Consensus 460 ~m-~~~~--~~p~-------~~~~~~ll~~~~~~g~~~~A~r 491 (491)
++ .+.. ..++ ...+..+..+|...|+.+++.+
T Consensus 405 ~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 405 KLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 73 3321 1122 2378899999999999887653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-22 Score=196.54 Aligned_cols=316 Identities=13% Similarity=0.059 Sum_probs=268.4
Q ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 150 CPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
.|.....+..++..+.+.|++++|+.+|+++.+.. +.+..+|..+..+|...|++++|.+.|+++.+.+.. +...+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 98 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARL 98 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHH
Confidence 46677889999999999999999999999998863 467999999999999999999999999999887533 678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHH------------HHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNV---VSFNTLI------------RGFFGERKFDEGVNMAYEMIELGCEFS 294 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~~~~~~ 294 (491)
.+..+|.+.|++++|.+.|+++.+.... +. ..+..++ ..+.+.|++++|+.+|+++.+... .+
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~ 176 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WD 176 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CC
Confidence 9999999999999999999999986432 33 5666554 448899999999999999998753 37
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHH---
Q 011201 295 SVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTL--- 371 (491)
Q Consensus 295 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--- 371 (491)
..++..+..+|.+.|++++|.++++.+.+.... +..++..+...|...|++++|.+.|+++...... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 788999999999999999999999999876433 6788999999999999999999999999886543 45555544
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 011201 372 ---------IEGLRRLRKGVEASGLMEKMLKEGILPD-----SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMT 437 (491)
Q Consensus 372 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 437 (491)
...|.+.|++++|.++|+++.+. .|+ ...|..+..++.+.|++++|...++.+.+.. +.+...
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~ 331 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHH
Confidence 78899999999999999999984 454 4578888999999999999999999988763 346899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 011201 438 YHILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYM 477 (491)
Q Consensus 438 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 477 (491)
|..+..+|...|++++|.+.++++.+ +.|+ ...+..+.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 99999999999999999999999995 4565 44555555
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-22 Score=196.82 Aligned_cols=361 Identities=12% Similarity=-0.056 Sum_probs=252.6
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN 168 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (491)
...|+..|..+.... |+..+|..+..++.+.|++++|...++.+.+.. |....++..+..++.+.|
T Consensus 22 ~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 22 YDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-----------PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-----------hHHHHHHHHHHHHHHHHh
Confidence 455788888877643 678888888888888888888888888877643 444577888888888888
Q ss_pred ChhHHHHHHHHHHHhcCCC-------------------------------------------------------------
Q 011201 169 RMNDGLLAFEAMRKLIDGR------------------------------------------------------------- 187 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~------------------------------------------------------------- 187 (491)
++++|+..|+++.+.....
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 8888888888887753200
Q ss_pred ----------------CCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh-----CCCCC--------ChhhHHHHHHHH
Q 011201 188 ----------------PSVSIYNVLINGFVK---CREFDKALGFYDRMVR-----DRVKP--------DVVTFNILISGF 235 (491)
Q Consensus 188 ----------------~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~~~~p--------~~~~~~~li~~~ 235 (491)
.+...+..+...+.. .|++++|...|+++.+ ..-.| +...+..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 002223333333333 6778888888887766 31111 245666777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 315 (491)
...|++++|.+.|+++.+.... ...|..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 7888888888888887776433 677777777888888888888888877765432 5567777777788888888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 395 (491)
..++.+.+.... +...+..+...+...|++++|.+.++++.+.... +...|..+...+...|++++|.+.++++.+..
T Consensus 325 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 325 KDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 888877766543 4556777777778888888888888887765433 45677777777888888888888887776641
Q ss_pred C-CCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011201 396 I-LPD----SVTFNCLLEDLCD---VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFI 467 (491)
Q Consensus 396 ~-~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (491)
. .++ ...+..+...+.. .|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+. .
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~ 479 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--A 479 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--c
Confidence 1 111 3367777777777 788888888887777653 335667777778888888888888888887754 3
Q ss_pred CCHH
Q 011201 468 PDLA 471 (491)
Q Consensus 468 p~~~ 471 (491)
|+..
T Consensus 480 ~~~~ 483 (514)
T 2gw1_A 480 RTME 483 (514)
T ss_dssp SSHH
T ss_pred cccH
Confidence 5443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-21 Score=192.87 Aligned_cols=361 Identities=9% Similarity=-0.116 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (491)
..+......+.+.|++++|...|+++.... | +..++..+..++.+.|++++|+..|+++.+.. +.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 72 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK-----------E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDY 72 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----------c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHH
Confidence 456778889999999999999999998754 2 25789999999999999999999999999874 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----------------------------------------------
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK----------------------------------------------- 222 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----------------------------------------------- 222 (491)
..+|..+..+|.+.|++++|...|+++...+..
T Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 73 SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 889999999999999999999999998765421
Q ss_pred ------------------------------C-ChhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCC-------
Q 011201 223 ------------------------------P-DVVTFNILISGFCR---NKKFDLALGLFREMRE-----KGC------- 256 (491)
Q Consensus 223 ------------------------------p-~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~g~------- 256 (491)
| +...+......+.. .|++++|..+|+++.+ ..-
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 0 13334444444444 8999999999999988 311
Q ss_pred -CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011201 257 -NPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFG 335 (491)
Q Consensus 257 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (491)
..+..++..+...+...|++++|..+++++.+.... ..++..+...+...|++++|...++.+.+.... +...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHH
Confidence 123567888999999999999999999999987654 888899999999999999999999999887544 5667899
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011201 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGR 415 (491)
Q Consensus 336 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 415 (491)
+...|...|++++|...++++.+.... +...+..+...+...|++++|.++++++.+.. ..+...+..+...+...|+
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999987654 67788899999999999999999999998863 2356788899999999999
Q ss_pred hHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 011201 416 TVDADRLRLLASTKGLD-PD----GMTYHILVSGYTR---ENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 416 ~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 487 (491)
+++|...++.+.+.... ++ ...|..+...|.. .|++++|.+.++++.+.. ..+..++..+...+.+.|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 99999999988764211 11 3488999999999 999999999999998753 336788999999999999999
Q ss_pred ccc
Q 011201 488 RQT 490 (491)
Q Consensus 488 ~A~ 490 (491)
+|.
T Consensus 467 ~A~ 469 (514)
T 2gw1_A 467 EAI 469 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-19 Score=170.32 Aligned_cols=320 Identities=12% Similarity=0.032 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.... +...|..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 4667788999999999999999999998863 457889999999999999999999999999876422 6788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCN--PNVVSFNTL------------IRGFFGERKFDEGVNMAYEMIELGCEFSSVTCE 299 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 299 (491)
.+.+.|++++|.+.|+++.+.... .+...+..+ ...+...|++++|+++++++.+... .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999999876330 144455544 5788999999999999999998754 3678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHH----------
Q 011201 300 ILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACT---------- 369 (491)
Q Consensus 300 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---------- 369 (491)
.+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.+++..+.... +...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 9999999999999999999999887543 6778999999999999999999999999886543 334333
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 370 --TLIEGLRRLRKGVEASGLMEKMLKEGILPDS----VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443 (491)
Q Consensus 370 --~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 443 (491)
.+...+.+.|++++|.+.++++.+.... +. ..+..+..++...|++++|...++.+.+.. +.+...|..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 2366688999999999999999885322 22 235557788999999999999999998863 347889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 011201 444 GYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDGLSNA 483 (491)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 483 (491)
.|.+.|++++|.+.|+++.+. .|+ ...+..+..+....
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHH
Confidence 999999999999999999954 455 55666666665443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-20 Score=184.69 Aligned_cols=361 Identities=9% Similarity=-0.057 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (491)
..+..+...+.+.|++++|...++++.... |....++..+..+|.+.|++++|++.|+++.+.. +.+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 92 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-----------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDH 92 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cch
Confidence 457778889999999999999999988753 4456889999999999999999999999998864 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------------------------------CChh-------
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK------------------------------------PDVV------- 226 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~------------------------------------p~~~------- 226 (491)
..++..+..++...|++++|.+.|+.+....-. |+..
T Consensus 93 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 93 SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 888999999999999999999988644211100 0000
Q ss_pred -----------------------hHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCC-------HHHHHHHHH
Q 011201 227 -----------------------TFNILISGFCR--------NKKFDLALGLFREMREKGCNPN-------VVSFNTLIR 268 (491)
Q Consensus 227 -----------------------~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~ 268 (491)
....+...+.. .|++++|.++|+++.+.... + ..++..+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGI 251 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHH
Confidence 11111111111 14678888888888765332 2 234666667
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI 348 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 348 (491)
.+...|++++|.+.++++.+.. |+..++..+...+...|++++|.+.++.+.+.... +..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 7788888888888888888764 34677778888888888888888888888776543 56678888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 349 ALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
|.+.++++.+.... +...|..+...+...|++++|.+.++++.+.. .-+...+..+...+...|++++|...++.+.+
T Consensus 329 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888888876543 45778888888888888888888888888753 23466777888888888888888888888765
Q ss_pred CCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 429 KGL-----DPDGMTYHILVSGYTRE----------NRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 429 ~g~-----~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
... ......+..+...|.+. |++++|.+.|+++.+.. ..+...+..+...|.+.|++++|.
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 321 11122244455667777 88888888888888653 235677888888888888888775
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-19 Score=165.23 Aligned_cols=320 Identities=10% Similarity=-0.007 Sum_probs=262.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
...+..+...+...|++++|...++.+.... |....++..+..++...|++++|+..|+++.+.. +.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~ 69 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MD 69 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC
Confidence 4567788899999999999999999998753 4446789999999999999999999999999863 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHH------------HHHHHhcCChhHHHHHHHHHHHc
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVTFNIL------------ISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+...|..+...+...|++++|.+.|++..+.... .+...+..+ ...+...|++++|.+.++++.+.
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7789999999999999999999999999876320 134445444 57889999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 011201 255 GCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYF 334 (491)
Q Consensus 255 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 334 (491)
... +...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++...+.... +...+.
T Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 226 (359)
T 3ieg_A 150 CVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFA 226 (359)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHH
Confidence 543 788899999999999999999999999998753 36788999999999999999999999999876543 222222
Q ss_pred ------------HHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 335 ------------GLVEKLCGEGNAGIALEVVDELWKKGNLPSV----IACTTLIEGLRRLRKGVEASGLMEKMLKEGILP 398 (491)
Q Consensus 335 ------------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 398 (491)
.+...+.+.|++++|.+.++++.+.... +. ..+..+...+...|++++|.+.+++..+.. ..
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~ 304 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cc
Confidence 3366789999999999999999886544 33 235567788999999999999999999852 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011201 399 DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR 447 (491)
Q Consensus 399 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 447 (491)
+..++..+...+...|++++|...++.+.+.. +-+...+..+..+...
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 68899999999999999999999999999863 2345666666555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-19 Score=175.43 Aligned_cols=355 Identities=12% Similarity=-0.020 Sum_probs=280.4
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..|+..|..+.... +.+..++..+...+.+.|++++|...++++.... |....++..+..++...|+
T Consensus 42 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 42 NEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-----------PDHSKALLRRASANESLGN 108 (537)
T ss_dssp C-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------CchHHHHHHHHHHHHHcCC
Confidence 34788888877643 3467889999999999999999999999998753 4456889999999999999
Q ss_pred hhHHHHHHHHHHHhcCC-----------------------------------CCCHH-----------------------
Q 011201 170 MNDGLLAFEAMRKLIDG-----------------------------------RPSVS----------------------- 191 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~-----------------------------------~~~~~----------------------- 191 (491)
+++|+..|+.+....+. .|+..
T Consensus 109 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 109 FTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 99999999644221000 00000
Q ss_pred -------HHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCC-------hhhHHHHHHHHHhcCChhHHHHHHH
Q 011201 192 -------IYNVLINGFVK--------CREFDKALGFYDRMVRDRVKPD-------VVTFNILISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 192 -------~~~~li~~~~~--------~~~~~~A~~~~~~m~~~~~~p~-------~~~~~~li~~~~~~~~~~~A~~~~~ 249 (491)
....+...+.. .|++++|.++|+++.+.... + ..++..+...+...|++++|.+.|+
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11222222211 14789999999998876422 2 2356777788899999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011201 250 EMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK 329 (491)
Q Consensus 250 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 329 (491)
++.+. .|+...|..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|.+.++.+.+.... +
T Consensus 268 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~ 343 (537)
T 3fp2_A 268 ESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-N 343 (537)
T ss_dssp HHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C
Confidence 99986 456888999999999999999999999999987643 6788999999999999999999999999887544 4
Q ss_pred HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHH
Q 011201 330 DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG-----ILPDSVTFN 404 (491)
Q Consensus 330 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~ 404 (491)
...+..+...|...|++++|.+.++++.+.... +...+..+...+...|++++|.+.|+++.+.. .......+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 567889999999999999999999999987543 67788999999999999999999999987642 111223344
Q ss_pred HHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 405 CLLEDLCDV----------GRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 405 ~ll~~~~~~----------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.....+... |++++|...++.+.+.. +.+...|..+..+|.+.|++++|.+.|++..+.
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555677777 99999999999998864 346788999999999999999999999999865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-18 Score=161.37 Aligned_cols=290 Identities=9% Similarity=-0.081 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+...|++++|.++|+++.+.... +...+..++..+.+.|++++|..+++++.+.... +...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 3444455555555556666666655555543221 3344444555555556666666666655554322 4455555555
Q ss_pred HHHcCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 269 GFFGER-KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 269 ~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
.+...| ++++|.+.|+++.+.... +...+..+...+...|++++|.+.++.+.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555665 566666666665544322 3445555556666666666666666665554332 2334445666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHH
Q 011201 348 IALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG--------ILPDSVTFNCLLEDLCDVGRTVDA 419 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~g~~~~a 419 (491)
+|.+.+++..+.... +...+..+...+...|++++|...+++..+.. ...+..++..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 666666666655432 45666666666777777777777776665531 122345666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCCc
Q 011201 420 DRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIP-DLATYNSYMDGL-SNARKS 486 (491)
Q Consensus 420 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~-~~~g~~ 486 (491)
...++.+.+.. +.+...|..+...|.+.|++++|.+.++++.+. .| +...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 77777766653 235666777777777777777777777777643 34 455566666656 344443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-18 Score=160.13 Aligned_cols=291 Identities=10% Similarity=-0.078 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+...+..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.... +...|..+..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 3456778888999999999999999998864 456677778889999999999999999999886432 6778899999
Q ss_pred HHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 234 GFCRNK-KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 234 ~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
.+...| ++++|.+.|+++.+.... +...|..+...+...|++++|++.++++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 999999 999999999999987543 6788999999999999999999999999987543 4567777999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCChHHH
Q 011201 313 KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG--------NLPSVIACTTLIEGLRRLRKGVEA 384 (491)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a 384 (491)
+|.+.++...+.... +...+..+...+...|++++|.+.+++..+.. .......|..+...|...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999887644 67789999999999999999999999988742 123467899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH
Q 011201 385 SGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGY-TRENRRK 452 (491)
Q Consensus 385 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~-~~~g~~~ 452 (491)
.+.+++..+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 999999988632 367788899999999999999999999988763 33677888888887 4556544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-16 Score=154.39 Aligned_cols=332 Identities=13% Similarity=0.044 Sum_probs=158.2
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHH
Q 011201 91 YDFHIFAWASTIDSFRHDHTTFLFIVRSLAS----SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVK 166 (491)
Q Consensus 91 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (491)
.|+..|..+... -+..++..+...+.. .+++++|...+++....+. ...+..+...|..
T Consensus 61 ~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------------~~a~~~Lg~~y~~ 123 (490)
T 2xm6_A 61 QAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL-------------PQAQQNLGVMYHE 123 (490)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHc
Confidence 344444444432 234444445555554 4555555555555444321 2334444444444
Q ss_pred ----cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-
Q 011201 167 ----ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK----CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR- 237 (491)
Q Consensus 167 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~- 237 (491)
.+++++|+..|++..+. -+..++..|...|.. .++.++|.+.|++..+.| +...+..|...|..
T Consensus 124 g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 196 (490)
T 2xm6_A 124 GNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRG 196 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcC
Confidence 44555555555554442 234444445555544 445555555555554443 44444444444444
Q ss_pred ---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---
Q 011201 238 ---NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN--- 307 (491)
Q Consensus 238 ---~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--- 307 (491)
.++.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+...|..
T Consensus 197 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~ 270 (490)
T 2xm6_A 197 LGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLA 270 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCC
Confidence 455555555555554442 33444444444443 445555555555554443 23344444444444
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 011201 308 -EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE-----GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR-- 379 (491)
Q Consensus 308 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-- 379 (491)
.++.++|.++|+...+.| +...+..+...|... ++.++|.+.|++..+.+ +...+..+...|...|
T Consensus 271 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 271 GAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSE 344 (490)
T ss_dssp SSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCH
T ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCc
Confidence 455555555555554443 223344444444443 45555555555555443 3344444444444433
Q ss_pred -ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 011201 380 -KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD----VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR----ENR 450 (491)
Q Consensus 380 -~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~ 450 (491)
+.++|+++|++..+.| +...+..+...|.. .++.++|...++...+.| +...+..|...|.+ .++
T Consensus 345 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred ccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 4445555555555432 34444444444444 455555555555555443 34444445555544 455
Q ss_pred HHHHHHHHHHHHHC
Q 011201 451 RKEGENLVNEMLDE 464 (491)
Q Consensus 451 ~~~A~~~~~~m~~~ 464 (491)
.++|.+.|++..+.
T Consensus 419 ~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 419 YVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
Confidence 55555555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-19 Score=167.59 Aligned_cols=292 Identities=12% Similarity=0.016 Sum_probs=200.4
Q ss_pred HHHcCChhHHHH-HHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 164 FVKANRMNDGLL-AFEAMRKLIDGRP--SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 164 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
+.-.|++++|++ .|++..+.....| +...+..+...+.+.|++++|...|+++.+... .+...|..+..++.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence 445678888888 7776655422222 356677888899999999999999999887643 367788888899999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHH---------------HHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEI---------------LVDGL 305 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~~~ 305 (491)
+++|++.|+++.+.... +..++..+...+...|++++|++.++++.+..... ...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999998877543 77888889999999999999999999988765332 222211 13333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 011201 306 CNEGRVLKACELVIDFSRRGVLP-KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEA 384 (491)
Q Consensus 306 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 384 (491)
...|++++|...++.+.+..... +..++..+...|...|++++|.+.++++.+.... +...|..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 37777788888877777654332 4566777777777778888888877777765432 566777777777777788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHH
Q 011201 385 SGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP----------DGMTYHILVSGYTRENRRKEG 454 (491)
Q Consensus 385 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p----------~~~~~~~li~~~~~~g~~~~A 454 (491)
++.|+++.+.. ..+...+..+..+|.+.|++++|...++.+.+..... ...+|..+..+|...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 87777777642 2246677777777777777777777777766532110 156777777777777777777
Q ss_pred HHHHHH
Q 011201 455 ENLVNE 460 (491)
Q Consensus 455 ~~~~~~ 460 (491)
..++++
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 777653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-18 Score=161.59 Aligned_cols=308 Identities=13% Similarity=-0.045 Sum_probs=228.3
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhCCC---CCChhhHHHHHHHHHhcCChh
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALG-FYDRMVRDRV---KPDVVTFNILISGFCRNKKFD 242 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~~ 242 (491)
.+.++.+...|+.+.+.. ++ ++.-.|++++|.+ .|++...... ..+...+..+...+.+.|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRD---AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHcCC---ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 344555556666665532 22 2334488899998 8886554321 114567888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
+|...|+++.+.... +..+|..+..++.+.|++++|++.|+++.+.... +..++..+...|...|++++|.+.++.+.
T Consensus 82 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 82 NAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987543 7889999999999999999999999999987643 77889999999999999999999999998
Q ss_pred hCCCCCCHhhHHH--------------HHHHHHcCCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 011201 323 RRGVLPKDFDYFG--------------LVEKLCGEGNAGIALEVVDELWKKGNLP-SVIACTTLIEGLRRLRKGVEASGL 387 (491)
Q Consensus 323 ~~~~~~~~~~~~~--------------li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 387 (491)
+............ .+..+...|++++|.+.++++.+..... +..++..+...|...|++++|+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 160 RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp HTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8764422222111 2334448899999999999999875432 588899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011201 388 MEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFI 467 (491)
Q Consensus 388 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (491)
|+++.+.. ..+...+..+...+...|++++|...++.+.+.. +.+...|..+..+|.+.|++++|.+.|+++.+..-.
T Consensus 240 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 240 FTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99998853 2357889999999999999999999999998864 346888999999999999999999999999864211
Q ss_pred ----------CCHHHHHHHHHHHHhcCCccccc
Q 011201 468 ----------PDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 468 ----------p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
....+|..+..+|...|++++|.
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 12689999999999999999885
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-20 Score=185.33 Aligned_cols=151 Identities=10% Similarity=0.075 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVR---DRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNT 265 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 265 (491)
-..+||+||++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346788888888888888888888877653 47788888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HhhHHHHHH
Q 011201 266 LIRGFFGERKF-DEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK------DFDYFGLVE 338 (491)
Q Consensus 266 li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 338 (491)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++.+ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 88888888774 67788888888888888888888777655443 233333333 2334433 445555666
Q ss_pred HHHcCC
Q 011201 339 KLCGEG 344 (491)
Q Consensus 339 ~~~~~g 344 (491)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-15 Score=146.85 Aligned_cols=353 Identities=11% Similarity=0.024 Sum_probs=299.1
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHH--
Q 011201 93 FHIFAWASTIDSFRHDHTTFLFIVRSLAS----SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVK-- 166 (491)
Q Consensus 93 ~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 166 (491)
+..+..... .-+..++..+...+.. .+++++|...+++....+. ..++..+...|..
T Consensus 27 ~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-------------~~a~~~Lg~~y~~g~ 89 (490)
T 2xm6_A 27 LEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY-------------TPAEYVLGLRYMNGE 89 (490)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHcCC
Confidence 445554444 2456678888888888 8999999999999988642 3678889999999
Q ss_pred --cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh---
Q 011201 167 --ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK----CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR--- 237 (491)
Q Consensus 167 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--- 237 (491)
.++.++|++.|++..+. .+..++..|...|.. .+++++|.+.|++..+.| +...+..|...|..
T Consensus 90 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 90 GVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 99999999999999875 477888889999998 889999999999998876 67788888888887
Q ss_pred -cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 011201 238 -NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN----E 308 (491)
Q Consensus 238 -~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~ 308 (491)
.+++++|++.|++..+.| +...+..+...|.. .++.++|+++|++..+.| +...+..+...|.. .
T Consensus 163 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 789999999999999875 78888899998888 899999999999999876 56778888888886 8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----C
Q 011201 309 GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCG----EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRL-----R 379 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g 379 (491)
+++++|.++|+...+.+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|... +
T Consensus 237 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcC
Confidence 99999999999998875 44567777777877 899999999999998876 677788888888887 8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 011201 380 KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVG---RTVDADRLRLLASTKGLDPDGMTYHILVSGYTR----ENRRK 452 (491)
Q Consensus 380 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~ 452 (491)
+.++|+.+|++..+.| +...+..+...|...| +.++|.++++...+.| +...+..|...|.. .++++
T Consensus 311 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 9999999999999875 5567777877777766 7899999999999874 67888899999988 89999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCccccc
Q 011201 453 EGENLVNEMLDEGFIPDLATYNSYMDGLSN----ARKSVRQT 490 (491)
Q Consensus 453 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~ 490 (491)
+|.+.|++..+.| +...+..+...|.+ .++.++|.
T Consensus 385 ~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 385 QAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999999876 57788888888887 78888774
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-18 Score=159.74 Aligned_cols=264 Identities=11% Similarity=-0.047 Sum_probs=150.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG 272 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 272 (491)
+..+...+.+.|++++|.+.|+++.+... .+..+|..+...+.+.|++++|++.|+++.+.... +..+|..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHc
Confidence 44444444444444444444444443321 13444444444445555555555555544443221 34445555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHc
Q 011201 273 ERKFDEGVNMAYEMIELGCE---------FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL-PKDFDYFGLVEKLCG 342 (491)
Q Consensus 273 ~g~~~~a~~~~~~m~~~~~~---------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 342 (491)
.|++++|++.++++.+.... .....+..+...+...|++++|.++++++.+.... .+..++..+...|..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555554443210 01122333456666677777777777776665432 145566777777777
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 343 EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 343 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
.|++++|.+.|+++.+.... +..+|+.+...|...|++++|++.|+++.+.. .-+..++..+..+|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777777765433 56777777777888888888888887777742 22466777777778888888888887
Q ss_pred HHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 423 RLLASTKGLD-----------PDGMTYHILVSGYTRENRRKEGENLVNE 460 (491)
Q Consensus 423 ~~~~~~~g~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 460 (491)
++.+.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7776653210 1356788888888888888888776654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.7e-18 Score=159.19 Aligned_cols=266 Identities=9% Similarity=-0.101 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|.+.|+++.+... .+..+|..+...
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 457788899999999999999999999864 46789999999999999999999999999987642 367899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCN---------PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE-FSSVTCEILVDG 304 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~ 304 (491)
|.+.|++++|++.|+++.+.... .....+..+...+.+.|++++|+++++++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999999875211 01223445688899999999999999999987543 267889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 011201 305 LCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEA 384 (491)
Q Consensus 305 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 384 (491)
|...|++++|.+.++++.+.... +..++..+..+|...|++++|.+.|+++.+.... +...|..+...|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999887543 6778999999999999999999999999987543 688999999999999999999
Q ss_pred HHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 385 SGLMEKMLKEGI---L--------PDSVTFNCLLEDLCDVGRTVDADRLRLL 425 (491)
Q Consensus 385 ~~~~~~m~~~~~---~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 425 (491)
...|+++.+... . .+...|..+..++...|+.+.+..+.+.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999887421 1 1357788999999999999998887654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-20 Score=183.26 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=122.2
Q ss_pred CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011201 328 PKDFDYFGLVEKLCGEGNAGIALEVVDELWK---KGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFN 404 (491)
Q Consensus 328 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 404 (491)
.-..+|+++|++||+.|++++|.++|++|.+ .|+.||.++||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 5788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 011201 405 CLLEDLCDVGRT-VDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD------LATYNSYM 477 (491)
Q Consensus 405 ~ll~~~~~~g~~-~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll 477 (491)
++|.++|+.|+. ++|.+++++|.+.|+.||..+|++++.++.+.+ +++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999885 788899999999999999999999987766653 44444444 3355555 44455555
Q ss_pred HHHHhcC
Q 011201 478 DGLSNAR 484 (491)
Q Consensus 478 ~~~~~~g 484 (491)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-17 Score=151.41 Aligned_cols=278 Identities=10% Similarity=-0.091 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+......+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|.+.|+++.+... .+...+..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 344556667777777777777777776652 34566677777777777777777777777665432 245566666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHH-HH-HHHhcCCHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEIL-VD-GLCNEGRVL 312 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~-~~~~~g~~~ 312 (491)
+...|++++|.+.++++.+.... +...+..++..+ ++......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 67777777777777666654222 111121110000 000111111 11 255667777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 313 KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
+|.++++.+.+.... +...+..+...|...|++++|.+.++++.+.... +...|..+...+...|++++|.+.++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777665433 5566777777777788888888888777765433 56778888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 393 KEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP-----------DGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 393 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
+.. ..+...+..+...+...|++++|...++.+.+..... +...|..+..+|.+.|++++|.+++++.
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 753 2356778888888888888888888888877653221 4678888889999999999999888754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-17 Score=151.49 Aligned_cols=248 Identities=9% Similarity=-0.033 Sum_probs=149.6
Q ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 150 CPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
.|....++..+..++...|++++|+..|+++.+.. +.+..++..+...|...|++++|.+.++++.+.... +...+.
T Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 127 (327)
T 3cv0_A 51 APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGS 127 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHH
Confidence 45667788889999999999999999999999873 457889999999999999999999999999876432 333333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR--GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
.+.... ++......+.. .+...|++++|.++++++.+.... +..++..+...+..
T Consensus 128 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 128 VNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNL 184 (327)
T ss_dssp ----------------------------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 331100 01111111111 133444455555555554443322 34444455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGL 387 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 387 (491)
.|++++|.+.++.+.+.... +...+..+...+...|++++|.+.++++.+.... +...|..+...|...|++++|.+.
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHH
Confidence 55555555555555443321 3444555666666666666666666666554322 455666667777777777777777
Q ss_pred HHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 388 MEKMLKEGILP-----------DSVTFNCLLEDLCDVGRTVDADRLRLL 425 (491)
Q Consensus 388 ~~~m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 425 (491)
++++.+..... +...+..+..++.+.|+.++|..+++.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77666542111 355667777777777777777776543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-16 Score=142.87 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=151.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCch-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEM-ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYN 194 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (491)
++.....|++..|+..++...... |.. .+....+.++|...|++++|+..++.. ..|+..++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~-----------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~ 69 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS-----------PERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVR 69 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC-----------chhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHH
Confidence 445556677777777766543321 222 234455567777777777777655431 245666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKP-DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
.+...+...++.++|++.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence 77777777777777777777776655444 344455555677777777777777766 23666777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTC---EILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIAL 350 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 350 (491)
|++++|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+... .+...++.+..++.+.|++++|.
T Consensus 144 g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776654 332111 1122333344666666666666665532 25555666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH
Q 011201 351 EVVDELWKKGNLPSVIACTTLIEGLRRLRKGVE-ASGLMEKMLK 393 (491)
Q Consensus 351 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~ 393 (491)
+.|++..+.... +..++..++..+...|+.++ +.++++++.+
T Consensus 221 ~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 221 GVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666666655433 55556666666666666644 4456666555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-15 Score=148.49 Aligned_cols=384 Identities=9% Similarity=-0.004 Sum_probs=268.3
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHH-HHHc
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNA-FVKA 167 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 167 (491)
...|..+|+.+... ++.+...|...+..+.+.|++++|..+|++++... | ....|...+.. ....
T Consensus 28 ~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-----------p-~~~lw~~~~~~~~~~~ 93 (530)
T 2ooe_A 28 IDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-----------L-HIDLWKCYLSYVRETK 93 (530)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-----------C-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------C-ChHHHHHHHHHHHHHc
Confidence 45578888887764 56677788888888888899999999998887643 3 23455555543 2346
Q ss_pred CChhHHHH----HHHHHHHhcCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 168 NRMNDGLL----AFEAMRKLIDGR-PSVSIYNVLINGFVK---------CREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 168 ~~~~~a~~----~~~~~~~~~~~~-~~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
|+.++|.+ +|++.....|.. .+...|...+....+ .|+++.|..+|++..+.........|.....
T Consensus 94 ~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~ 173 (530)
T 2ooe_A 94 GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNK 173 (530)
T ss_dssp TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Confidence 77777665 777766544433 456778877776655 6788899999998877311111234433222
Q ss_pred HH-------------HhcCChhHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHcC----CCH---
Q 011201 234 GF-------------CRNKKFDLALGLFREMR------EKG---CNPN--------VVSFNTLIRGFFGE----RKF--- 276 (491)
Q Consensus 234 ~~-------------~~~~~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~----g~~--- 276 (491)
.. .+.++++.|..++.++. +.. +.|+ ...|...+...... ++.
T Consensus 174 ~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~ 253 (530)
T 2ooe_A 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 253 (530)
T ss_dssp HHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHH
T ss_pred HHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhH
Confidence 11 12345677777776532 111 2333 24565555433322 232
Q ss_pred -HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011201 277 -DEGVNMAYEMIELGCEFSSVTCEILVDGLCN-------EGRVL-------KACELVIDFSRRGVLPKDFDYFGLVEKLC 341 (491)
Q Consensus 277 -~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 341 (491)
+++..+|++..... +-+...|...+..+.+ .|+++ +|..+++...+.-.+-+...|..++..+.
T Consensus 254 ~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 254 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 36778888888764 2367788888777765 79987 89999999886323336778899999999
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPS-VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLED-LCDVGRTVDA 419 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~a 419 (491)
+.|++++|.++|+++.+.... + ...|..++..+.+.|+.++|.++|++..+.. ..+...|...... +...|+.++|
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHH
Confidence 999999999999999986432 3 3589999998999999999999999998852 1233333332222 3468999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCccccc
Q 011201 420 DRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEG-FIPD--LATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 420 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~~~A~ 490 (491)
..+|+...+.. +-+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+++.
T Consensus 411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999988763 3468899999999999999999999999999863 3332 558888899888999887764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-16 Score=141.83 Aligned_cols=274 Identities=11% Similarity=0.054 Sum_probs=206.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPS--VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
++-....|++.+|+..+++.... .|+ ....-.+..+|...|+++.|+..++.. -.|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC
Confidence 44556789999999988876543 243 345566788999999999999876542 355777888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011201 239 KKFDLALGLFREMREKGCNPN-VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 317 (491)
++.++|++.++++...+..|+ ...+..+...+.+.|++++|++.+++ ..+...+..++..|.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999988775554 55667777899999999999999987 34778888899999999999999999
Q ss_pred HHHHHhCCCCCCHh---hHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 318 VIDFSRRGVLPKDF---DYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 318 ~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
++.+.+.. |+.. ....++..+...|++++|..+|+++.+... .+...|+.+..++.+.|++++|.+.|++.++.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998775 3321 112334455566889999999999988743 47888888999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011201 395 GILPDSVTFNCLLEDLCDVGRTVD-ADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGEN 456 (491)
Q Consensus 395 ~~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 456 (491)
. .-+..++..++..+...|+.++ +.++++.+.+. .|+... +.+...+.+.++++..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 3 2267788888888888888875 56788888775 344332 2233444455555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=161.96 Aligned_cols=220 Identities=10% Similarity=0.051 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|.+.++...+. .+++.+.+.++.+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~ 103 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHH
Confidence 35555555555555555555555321 34445555555555555555555544433332 2234445555555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 314 (491)
|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|..++.++.+.|++++|
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHH
Confidence 555555555555443 134445555555555555555555555543 2455555555555555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 315 CELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE 394 (491)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 394 (491)
.+.+..+ .+..+|..++.+|+..|+++.|......+ ...+.....++..|.+.|++++|+.+++.....
T Consensus 168 Vea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 168 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 5555544 13445555555555555555553333221 112222334555555555555555555554433
Q ss_pred CCCCCHHHHHHHHHHHH
Q 011201 395 GILPDSVTFNCLLEDLC 411 (491)
Q Consensus 395 ~~~p~~~~~~~ll~~~~ 411 (491)
. +-....|+.+.-+|+
T Consensus 237 e-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 237 E-RAHMGMFTELAILYS 252 (449)
T ss_dssp T-TCCHHHHHHHHHHHH
T ss_pred c-HHHHHHHHHHHHHHH
Confidence 2 223444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=152.96 Aligned_cols=280 Identities=11% Similarity=0.019 Sum_probs=127.8
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLAL 245 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 245 (491)
+.|++++|.++++++.. | .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~~-----~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-----P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 56779999999998832 3 48999999999999999999999653 47789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011201 246 GLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRG 325 (491)
Q Consensus 246 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 325 (491)
+.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 977766653 3467888999999999999999888885 256679999999999999999999999876
Q ss_pred CCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 011201 326 VLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNC 405 (491)
Q Consensus 326 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 405 (491)
..|..++.++.+.|++++|.+.++++ + ++.+|..++.+|+..|+++.|...... +..+..-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA---~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc---C---CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 36999999999999999999999988 2 789999999999999999999655443 2234444557
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 011201 406 LLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRE--NRRKEGENLVNEMLDEGFIP------DLATYNSYM 477 (491)
Q Consensus 406 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ll 477 (491)
++..|.+.|.+++|..+++...... .-...+|+-|..+|++- |+..+.+++|..-+ ++.| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Confidence 8889999999999999998887654 44566777777777664 44445555443211 2222 345677888
Q ss_pred HHHHhcCCccccc
Q 011201 478 DGLSNARKSVRQT 490 (491)
Q Consensus 478 ~~~~~~g~~~~A~ 490 (491)
-.|.+-|++|.|.
T Consensus 290 ~ly~~~~e~d~A~ 302 (449)
T 1b89_A 290 FLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHhhchHHHHH
Confidence 8888888877764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-15 Score=145.21 Aligned_cols=351 Identities=11% Similarity=-0.031 Sum_probs=234.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLID-- 185 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 185 (491)
....|+.+..++...|++++|++.+++..+...... .....+....+|..+..+|...|++++|+..+++..+...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~--~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEH--ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345789999999999999999999988754210000 0012244567899999999999999999999998765311
Q ss_pred -C---CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHcCC
Q 011201 186 -G---RPSVSIYNVLINGFVKC--REFDKALGFYDRMVRDRVKPDVVTFNILISG---FCRNKKFDLALGLFREMREKGC 256 (491)
Q Consensus 186 -~---~~~~~~~~~li~~~~~~--~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g~ 256 (491)
. .....+++.+..++.+. +++++|.+.|++..+.... +...+..+... +...++.++|++.+++..+...
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 0 12356677666666654 5699999999998875422 44455544444 4456888999999999887643
Q ss_pred CCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 257 NPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 257 ~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
. +...+..+...+.. .|++++|.+++++..+.... +..++..+...|...|++++|...++...+.... +..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 3 56666666555543 46788999999998877543 6778888999999999999999999999887544 4555
Q ss_pred HHHHHHHHHcC-------------------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 333 YFGLVEKLCGE-------------------GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 333 ~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
+..+...|... +..+.|...+++..+.... +...+..+...|...|++++|++.|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66665555322 2356777788887776533 556788889999999999999999999988
Q ss_pred CCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHHCCC-----------------------CCCHHHHHHHHHHHHh
Q 011201 394 EGILPDSV--TFNCLLE-DLCDVGRTVDADRLRLLASTKGL-----------------------DPDGMTYHILVSGYTR 447 (491)
Q Consensus 394 ~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~g~-----------------------~p~~~~~~~li~~~~~ 447 (491)
....+... .+..+.. .....|+.++|+..+++..+... +.+..+|..+..+|..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 64333221 2222222 23567899999998887766421 2234566777777777
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 011201 448 ENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 448 ~g~~~~A~~~~~~m~~~~ 465 (491)
.|++++|++.|++.++.+
T Consensus 443 ~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHCC-------------
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 777777777777776553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-13 Score=141.01 Aligned_cols=271 Identities=14% Similarity=0.095 Sum_probs=196.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
+...+...|.+++|..+|++... ...+.+.++. ..+++++|.++.++.. +..+|..+..++.+.|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 56667778888888888887531 2333333433 5677888888887652 5677888888888888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
++++|++.|.+. -|...|..++.+|.+.|++++|.++|...++.. ++....+.++.+|++.+++++...++
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 888888888663 277788888888888888888888888777654 23333445888888888887544443
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
+ .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. -+
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 1 234556677888888888888888888874 36888888888888888888888766 25
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 011201 400 SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDL-ATYNSYMD 478 (491)
Q Consensus 400 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~ 478 (491)
..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+++++..+ |+.+.. ..|.-+..
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHH
Confidence 67888888888888888888776432 33467778889999999999999999998887 444333 34544444
Q ss_pred HHHh
Q 011201 479 GLSN 482 (491)
Q Consensus 479 ~~~~ 482 (491)
.+++
T Consensus 1323 LyaK 1326 (1630)
T 1xi4_A 1323 LYSK 1326 (1630)
T ss_pred HHHh
Confidence 4443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-13 Score=131.14 Aligned_cols=360 Identities=8% Similarity=-0.056 Sum_probs=252.9
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHH
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSL-ASSYRFSELHS----VLNFISANPCPCSNDGIFSCPEMERIFHFAVNAF 164 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (491)
..|..+|..+... .|+...|...+... ...|+++.|.+ +|+....... ..+....+|...+...
T Consensus 63 ~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g--------~~~~~~~~w~~~~~~~ 131 (530)
T 2ooe_A 63 DKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIG--------MEIMSYQIWVDYINFL 131 (530)
T ss_dssp HHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTT--------TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCC--------CCcccHHHHHHHHHHH
Confidence 3477888887764 36777777777544 34578877766 6666654310 1245567787777766
Q ss_pred HH---------cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHH------
Q 011201 165 VK---------ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGF-------------VKCREFDKALGFYDRM------ 216 (491)
Q Consensus 165 ~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-------------~~~~~~~~A~~~~~~m------ 216 (491)
.+ .|++++|..+|++..+. ........|....... .+.++++.|..++.++
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 132 KGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 55 78999999999999873 1111123444332211 1245677788777763
Q ss_pred hhCC---CCCC--------hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----
Q 011201 217 VRDR---VKPD--------VVTFNILISGFCRN----KKF----DLALGLFREMREKGCNPNVVSFNTLIRGFFG----- 272 (491)
Q Consensus 217 ~~~~---~~p~--------~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----- 272 (491)
.+.. +.|+ ...|...+...... ++. +++..+|++....... +...|..++..+.+
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhh
Confidence 2221 2333 24555555433222 232 4778899998876332 67889888888875
Q ss_pred --CCCHH-------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011201 273 --ERKFD-------EGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE 343 (491)
Q Consensus 273 --~g~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 343 (491)
.|+++ +|.++|++..+.-.+-+...+..++..+.+.|++++|..+|+.+.+....-....|..++..+.+.
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence 79987 899999998863223367888999999999999999999999999864321135788889989999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 344 GNAGIALEVVDELWKKGNLPSVIACTTLIE-GLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
|++++|.++|++..+.... +...|..... .+...|+.++|..+|++.++.. .-+...|..++..+.+.|+.++|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 9999999999999876432 2333332222 2346899999999999998852 22578899999999999999999999
Q ss_pred HHHHHHCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 423 RLLASTKGL-DPD--GMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 423 ~~~~~~~g~-~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
|+.....+. .|+ ...|...+......|+.+.+.++++++.+.
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999988642 232 457888888888999999999999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-14 Score=136.29 Aligned_cols=332 Identities=9% Similarity=-0.096 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLI-------DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD-----R- 220 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~- 220 (491)
...|+.+...+...|++++|++.|++..+.. .......+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4689999999999999999999999876531 11335678999999999999999999999887542 1
Q ss_pred CCC-ChhhHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHcCCCCC
Q 011201 221 VKP-DVVTFNILISGFCR--NKKFDLALGLFREMREKGCNPNVVSFNTLIRG---FFGERKFDEGVNMAYEMIELGCEFS 294 (491)
Q Consensus 221 ~~p-~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~~~ 294 (491)
..+ ...++..+..++.+ .+++++|++.|++..+.... +...+..+..+ +...++.++|++.+++..+.... +
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 111 24556655555554 45799999999999886433 45555555544 44568888999999998876533 5
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 295 SVTCEILVDGLCN----EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTT 370 (491)
Q Consensus 295 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (491)
..++..+...+.. .|++++|.+++++....... +..++..+...|...|++++|.+.+++..+..+. +...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 5566655555544 46778999999988876544 5677889999999999999999999999887544 5666766
Q ss_pred HHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 371 LIEGLRRL-------------------RKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL 431 (491)
Q Consensus 371 li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 431 (491)
+...|... +..++|...+++..+... .+...+..+...+...|++++|...|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66555322 235678888888777532 2455677888899999999999999999988643
Q ss_pred CCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC-----------------------CCCHHHHHHHHHHHHhcCC
Q 011201 432 DPDG--MTYHILVS-GYTRENRRKEGENLVNEMLDEGF-----------------------IPDLATYNSYMDGLSNARK 485 (491)
Q Consensus 432 ~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~-----------------------~p~~~~~~~ll~~~~~~g~ 485 (491)
.+.. ..+..+.. .+...|+.++|++.|++.++..- ..+..+|..+...|...|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3322 12233332 34578999999999988875421 2245678889999999999
Q ss_pred ccccc
Q 011201 486 SVRQT 490 (491)
Q Consensus 486 ~~~A~ 490 (491)
+++|.
T Consensus 446 ~~~A~ 450 (472)
T 4g1t_A 446 MQQAD 450 (472)
T ss_dssp CC---
T ss_pred HHHHH
Confidence 99886
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.7e-15 Score=130.28 Aligned_cols=229 Identities=13% Similarity=0.032 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCN--PNVVSFNTLIR 268 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~li~ 268 (491)
..|..+...+...|++++|.+.|++..+.. .+...|..+..++...|++++|.+.+++..+.... ++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 344555555555555555555555554443 34455555555555555555555555554443111 0100
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI 348 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 348 (491)
....++..+...+...|++++|...++...+.... ...+.+.|++++
T Consensus 77 ------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 77 ------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEK 123 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHH
Confidence 00234444444444445555555544444443211 123344455666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 349 ALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
|.+.++++...... +...|..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|...++.+.+
T Consensus 124 a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666554321 44556666667777777777777777776643 22466677777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 429 KGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 429 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.. +.+...|..+...|.+.|++++|.+.+++..+.
T Consensus 202 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 53 334667777777777778888887777777643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=128.99 Aligned_cols=226 Identities=10% Similarity=0.048 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CC----hh
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PD----VV 226 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~----~~ 226 (491)
....+..+...+...|++++|+..|++..+.. .+..+|..+...|...|++++|.+.|++..+.... ++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 35678889999999999999999999999874 67889999999999999999999999998764221 12 57
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLC 306 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 306 (491)
.|..+...+.+.|++++|.+.|++..+.. |+. ..+.+.|++++|...++++.+... .+...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHH
Confidence 78888889999999999999999988753 342 335555777888888887776532 24455666666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 307 NEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
..|++++|...++...+.... +...+..+...|...|++++|.+.+++..+.... +...|..+...+.+.|++++|.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 777777777777776655433 4455666666666666666666666666654322 45556666666666666666666
Q ss_pred HHHHHHH
Q 011201 387 LMEKMLK 393 (491)
Q Consensus 387 ~~~~m~~ 393 (491)
.+++..+
T Consensus 229 ~~~~a~~ 235 (258)
T 3uq3_A 229 TLDAART 235 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-13 Score=143.21 Aligned_cols=311 Identities=11% Similarity=0.022 Sum_probs=235.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH-HcCChhHHHHHHHHHHHhcCCCCCHHHHH
Q 011201 116 VRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV-KANRMNDGLLAFEAMRKLIDGRPSVSIYN 194 (491)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (491)
...+...|.+++|..+|++... +...+..+. ..|++++|.++.+++ -+..+|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-------------------~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWs 1109 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-------------------NTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWS 1109 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHH
Confidence 4455566667777777766421 111222223 667788887777654 3578889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.+..++.+.|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 9999999999999999999664 278889999999999999999999999877764 23333445999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
++++...+. + .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.++
T Consensus 1182 rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 988644442 2 235566777999999999999999999885 369999999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 355 ELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD 434 (491)
Q Consensus 355 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 434 (491)
+. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++...... .-.
T Consensus 1246 KA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH 1313 (1630)
T 1xi4_A 1246 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAH 1313 (1630)
T ss_pred Hh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhH
Confidence 76 2678999999999999999988887654 33466777889999999999999999998776543 334
Q ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCccccc
Q 011201 435 GMTYHILVSGYTRE--NRRKEGENLVNEMLDEGFIP------DLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 435 ~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
...|.-+...|++. ++..++.++|..-. .+.+ +...|..+.-.|.+.|+++.|.
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 56777777777764 55666666665443 3322 4677999999999999999875
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=125.88 Aligned_cols=196 Identities=12% Similarity=-0.040 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+.... +...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 4567777888888888888888888887753 456777888888888888888888888887765422 5567777777
Q ss_pred HHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011201 234 GFCRN-----------KKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILV 302 (491)
Q Consensus 234 ~~~~~-----------~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 302 (491)
.+.+. |++++|+..|++..+.... +...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 7777777777776665333 45666666677777777777777777776665 4566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHH
Q 011201 303 DGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDEL 356 (491)
Q Consensus 303 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 356 (491)
.+|...|++++|...++...+.... +...+..+...+...|++++|.+.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666777777777777666655432 4445556666666666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-13 Score=121.43 Aligned_cols=221 Identities=15% Similarity=0.031 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK----CREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
..++..+...+...|++++|+..|++..+. .+..++..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 456666677777777777777777777662 345666667777777 777777777777766654 566666
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011201 230 ILISGFCR----NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEIL 301 (491)
Q Consensus 230 ~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 301 (491)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+++|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666766 777777777777766653 55666666666666 667777777776666654 34455555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 302 VDGLCN----EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCG----EGNAGIALEVVDELWKKGNLPSVIACTTLIE 373 (491)
Q Consensus 302 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 373 (491)
...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 556666666665555443 23344444455555 555555555555555443 2344444444
Q ss_pred HHHh----cCChHHHHHHHHHHHH
Q 011201 374 GLRR----LRKGVEASGLMEKMLK 393 (491)
Q Consensus 374 ~~~~----~g~~~~a~~~~~~m~~ 393 (491)
.|.. .++.++|.+.|++..+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 4444 4555555555554444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-13 Score=120.23 Aligned_cols=224 Identities=11% Similarity=-0.008 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR----NKKFDLALGLFREMREKGCNPNVVSFN 264 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~ 264 (491)
+..++..+...|...|++++|.+.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55666777777777777777777777776632 45666667777777 777777777777777664 566677
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011201 265 TLIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN----EGRVLKACELVIDFSRRGVLPKDFDYFGL 336 (491)
Q Consensus 265 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (491)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777776654 55666666666666 667777777776666654 33445555
Q ss_pred HHHHHc----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 337 VEKLCG----EGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRR----LRKGVEASGLMEKMLKEGILPDSVTFNCLLE 408 (491)
Q Consensus 337 i~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 408 (491)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 566666666666665553 34555555555555 566666666666655542 2444445555
Q ss_pred HHHh----cCChHHHHHHHHHHHHCC
Q 011201 409 DLCD----VGRTVDADRLRLLASTKG 430 (491)
Q Consensus 409 ~~~~----~g~~~~a~~~~~~~~~~g 430 (491)
.|.+ .++.++|.+.++...+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555 555556665555555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-14 Score=124.71 Aligned_cols=197 Identities=11% Similarity=-0.030 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
++...+..+...+.+.|++++|...|++..+.... +...|..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 45556666777777777777777777776665322 5566666777777777777777777777665433 455666666
Q ss_pred HHHHcC-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011201 268 RGFFGE-----------RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGL 336 (491)
Q Consensus 268 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (491)
..+.+. |++++|+..|++..+.... +...+..+...+...|++++|+..|++..+.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 5556666555555554322 34445555555555555555555555555544 344445555
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 337 VEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEK 390 (491)
Q Consensus 337 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 390 (491)
..+|...|++++|...|++..+..+. +...+..+...+.+.|++++|++.|++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555555544322 344444455555555555555555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-13 Score=129.59 Aligned_cols=235 Identities=8% Similarity=0.062 Sum_probs=183.7
Q ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCChhh
Q 011201 149 SCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE-FDKALGFYDRMVRDRVKPDVVT 227 (491)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~ 227 (491)
..|....++..+...+.+.|++++|+..|+++.+.. +.+..+|+.+..++...|+ +++|++.|++..+.... +...
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a 168 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQV 168 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHH
Confidence 346677889999999999999999999999999874 4578899999999999997 99999999999886544 7788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
|+.+..++.+.|++++|+..|+++.+.... +...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.+
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 999999999999999999999999987655 7889999999999999999999999999988654 67888888888888
Q ss_pred -cCCHHHH-----HHHHHHHHhCCCCCCHhhHHHHHHHHHcCC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011201 308 -EGRVLKA-----CELVIDFSRRGVLPKDFDYFGLVEKLCGEG--NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR 379 (491)
Q Consensus 308 -~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 379 (491)
.|..++| +..++..++.... +...|..+...+...| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHh
Confidence 5554666 4666666665433 4556666666666666 466677766666 322 224556666666666653
Q ss_pred ---------ChHHHHHHHHHH
Q 011201 380 ---------KGVEASGLMEKM 391 (491)
Q Consensus 380 ---------~~~~a~~~~~~m 391 (491)
..++|+++|+++
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHH
Confidence 236677777666
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-13 Score=120.48 Aligned_cols=202 Identities=11% Similarity=-0.001 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
..++..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++|.+.|+++.+... .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHH
Confidence 4667778888889999999999999888763 45678888888888899999999999988876542 26677788888
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
.+.+.|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888887733334 4566777778888888888888888887766432 4566677777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011201 313 KACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG 360 (491)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 360 (491)
+|...++.+.+... .+...+..+...+...|+.++|.+.++++.+..
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777777666443 244455666666666677777766666666543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-13 Score=116.15 Aligned_cols=204 Identities=11% Similarity=-0.015 Sum_probs=135.9
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|....++..+...+...|++++|+..|+++.+.. +.+...+..+...|...|++++|.+.|+++.+... .+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 81 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNN 81 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHH
Confidence 4456677778888888888888888888887753 34577778888888888888888888888766532 25667777
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 231 LISGFCRN-KKFDLALGLFREMREKGCNPN-VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 231 li~~~~~~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
+...+... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|+..++++.+.... +...+..+...+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHc
Confidence 77777777 888888888877776322232 456667777777777777777777777665422 455566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 309 GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 309 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
|++++|...++.+.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666666665543312344444555555555555555555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-13 Score=129.04 Aligned_cols=249 Identities=13% Similarity=0.067 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhcCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR-MNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~ 187 (491)
..+|..+...+.+.|++++|+..+++++... |....+|..+..++.+.|+ +++|+..|+++.+.. +
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P 163 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-----------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--P 163 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--C
Confidence 4568888889999999999999999998754 5567899999999999997 999999999999874 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
.+..+|+.+..++...|++++|+..|+++.+.... +...|..+..++.+.|++++|++.|+++.+.... +...|+.+.
T Consensus 164 ~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg 241 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRY 241 (382)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 57899999999999999999999999999887544 7889999999999999999999999999998655 788999999
Q ss_pred HHHHc-CCCHHHH-----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011201 268 RGFFG-ERKFDEG-----VNMAYEMIELGCEFSSVTCEILVDGLCNEG--RVLKACELVIDFSRRGVLPKDFDYFGLVEK 339 (491)
Q Consensus 268 ~~~~~-~g~~~~a-----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 339 (491)
.++.+ .|..++| ++.|++.++.... +...|..+...+...| ++++|.+.+..+ +. ...+...+..+...
T Consensus 242 ~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~ 318 (382)
T 2h6f_A 242 FVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHH
Confidence 99999 6665777 5889988887543 6778888888888888 689999999887 33 23356778889999
Q ss_pred HHcCC---------CHhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 011201 340 LCGEG---------NAGIALEVVDEL-WKKGNLPSVIACTTLIEGLR 376 (491)
Q Consensus 340 ~~~~g---------~~~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~ 376 (491)
|.+.| ..++|.++++++ .+.... ....|..+...+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 98874 258999999998 565322 4556666665554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-13 Score=121.46 Aligned_cols=59 Identities=7% Similarity=-0.037 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
|..+...+...|++++|++.|++..+.... +..++..+...|...|++++|.+.+++..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 334444444444444444444444433211 22333444444444444444444444333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-13 Score=120.91 Aligned_cols=200 Identities=13% Similarity=-0.006 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...|..+...+...|++++|.+.|+++.+... .+...+..+...+.+.|++++|.+.|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 45566777777777777777777777765432 25566667777777777777777777777665332 55666666666
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEF-SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI 348 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 348 (491)
+...|++++|+++++++.+.+..| +...+..+...+...|++++|.+.++.+.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777666522222 3344555555666666666666666655554322 34445555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 349 ALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
|.+.++++.+... .+...+..+...+...|+.++|.++++++.+
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555544332 2344444555555555555555555555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=128.94 Aligned_cols=187 Identities=9% Similarity=-0.079 Sum_probs=102.6
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV 201 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 201 (491)
.+++++|...++.+...... ..|....++..+..++...|++++|+..|+++.+.. +.+..+|..+...|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRAL-------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCC-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccc-------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 35666777777766654211 113445566666677777777777777777766652 335666666666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 011201 202 KCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVN 281 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 281 (491)
..|++++|.+.|++..+.... +...+..+...+.+.|++++|.+.|+++.+.. |+.......+..+...|++++|..
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHH
Confidence 777777777777666654221 45556666666666666666666666666542 233333333333344455666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 282 MAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 282 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
.+++...... .+...+ .++..+...++.++|.+.+....
T Consensus 166 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 166 VLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHC
T ss_pred HHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHh
Confidence 6555544321 122222 23444444445555555554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-14 Score=127.61 Aligned_cols=248 Identities=10% Similarity=-0.094 Sum_probs=163.7
Q ss_pred HcCChhHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH
Q 011201 166 KANRMNDGLLAFEAMRKLIDGR--PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDL 243 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 243 (491)
..|++++|+..|+++.+..... .+..+|..+...+...|++++|.+.|++..+.... +...|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 4577889999999888752211 24677888888999999999999999988776432 67788888888899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 244 ALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 244 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
|.+.|+++.+.... +...|..+...+.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+.....
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999988876433 57788888888888899999998888888764 3333344444555666888888888876665
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 011201 324 RGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP---SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDS 400 (491)
Q Consensus 324 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 400 (491)
.... +.. ...++..+...++.++|.+.+++........ +...|..+...|.+.|++++|...|++..+. .|+.
T Consensus 173 ~~~~-~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KSDK-EQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HSCC-CST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cCCc-chH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 5322 222 2336666666777777777777665432110 1355566666666666666666666666653 2321
Q ss_pred HHHHHHHHHHHhcCChHHHHHHH
Q 011201 401 VTFNCLLEDLCDVGRTVDADRLR 423 (491)
Q Consensus 401 ~~~~~ll~~~~~~g~~~~a~~~~ 423 (491)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 111233444555555554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-13 Score=116.00 Aligned_cols=202 Identities=9% Similarity=-0.062 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+...|++++|.+.|+++.+... .+...|..+...+...|++++|.+.++++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 455566666677777777777777776665432 24556666666666666777776666666654322 4556666666
Q ss_pred HHHcC-CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCH
Q 011201 269 GFFGE-RKFDEGVNMAYEMIELGCEF-SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNA 346 (491)
Q Consensus 269 ~~~~~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 346 (491)
.+... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++.+.+.... +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 66666 66666666666666521112 1344555555555556666665555555544322 234444455555555555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 347 GIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
++|.+.++++.+.....+...+..+...+...|+.+++..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555544433212344444444444445555555555544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-13 Score=121.82 Aligned_cols=250 Identities=12% Similarity=-0.004 Sum_probs=190.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--ChhhHHHHH
Q 011201 225 VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF--SSVTCEILV 302 (491)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~ll 302 (491)
...+......+.+.|++++|++.|++..+.... +...+..+...+...|++++|++.+++..+.+..+ ....|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 344555667788888888888888888876433 45578888888899999999999999888743221 223488899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 011201 303 DGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGV 382 (491)
Q Consensus 303 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 382 (491)
..+...|++++|.+.++...+.... +...+..+...|...|++++|.+.+++..+.... +...|..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887544 5568999999999999999999999998876433 6777777773444556999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHH
Q 011201 383 EASGLMEKMLKEGILPDSVTFNCLLEDLCDVGR---TVDADRLRLLASTKG-LDPD------GMTYHILVSGYTRENRRK 452 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~g-~~p~------~~~~~~li~~~~~~g~~~ 452 (491)
+|.+.|+++.+.. ..+...+..+..++...|+ .++|...++++.+.. -.|+ ...|..+...|.+.|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999853 2246777788888888888 888999888876541 1133 257888999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 011201 453 EGENLVNEMLDEGFIPD-LATYNSYMDGL 480 (491)
Q Consensus 453 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 480 (491)
+|.+.|+++.+. .|+ ...+..+-...
T Consensus 239 ~A~~~~~~al~~--~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHC---
T ss_pred HHHHHHHHHHhc--CccHHHHHHHhhhhh
Confidence 999999999965 354 44444444333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=121.77 Aligned_cols=199 Identities=14% Similarity=0.066 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.|+++.+... .+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 456666777778888888888888877642 44677777777888888888888888887766532 256667777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 314 (491)
+...|++++|.+.++++.+.... +...+..+...+.+.|++++|.++++++.+... .+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777765432 566677777777777777777777777766542 2455566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011201 315 CELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK 359 (491)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 359 (491)
...++.+.+.... +..++..+...|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666554322 3444555555555566666666666555554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-13 Score=120.06 Aligned_cols=201 Identities=10% Similarity=0.041 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
.....|..+...+...|++++|...|+++.+... .+...+..+...+.+.|++++|++.|+++.+.... +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 3455677777777788888888888888776532 25667777777777888888888888877765432 566777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
..+...|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.... +...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHH
Confidence 777777777777777777776543 24556666666666667777777666666554322 3444555555555566666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 348 IALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
+|.+.++++.+.... +...|..+...|...|++++|.+.++++.+
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 666666555554322 344555555555555555555555555554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=131.16 Aligned_cols=205 Identities=15% Similarity=0.043 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-Ch
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS--VSIYNVLINGFVKCREFDKALGFYDRMVRD----RVKP-DV 225 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~ 225 (491)
....+......+...|++++|+..|+++.+.....+. ..+|..+...|...|++++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445666777888888888888888888776311111 356777788888888888888888876432 1111 23
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCC--------------------HHHHH
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREKGCN-PN----VVSFNTLIRGFFGERK--------------------FDEGV 280 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~a~ 280 (491)
.++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666777777778888888777776543100 01 3356666666777777 66666
Q ss_pred HHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHcCCCHhHHH
Q 011201 281 NMAYEMIEL----GCE-FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL-PK----DFDYFGLVEKLCGEGNAGIAL 350 (491)
Q Consensus 281 ~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~ 350 (491)
+.+++..+. +.. ....++..+...|...|++++|.+.+++..+.... ++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666655432 100 01234445555555555555555555554432100 00 113444444444444444444
Q ss_pred HHHHHHH
Q 011201 351 EVVDELW 357 (491)
Q Consensus 351 ~~~~~m~ 357 (491)
+.+++..
T Consensus 248 ~~~~~al 254 (406)
T 3sf4_A 248 EYYKKTL 254 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-13 Score=129.98 Aligned_cols=279 Identities=13% Similarity=0.009 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CC
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV----SIYNVLINGFVKCREFDKALGFYDRMVRD----RV-KP 223 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p 223 (491)
....+..+...+...|++++|+..|+++.+.. +.+. .+|..+...|...|++++|.+.|++..+. +- ..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34556667788888999999999999888863 2232 46788888888888999998888876542 11 11
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHcCCC-----------------HHHHHH
Q 011201 224 DVVTFNILISGFCRNKKFDLALGLFREMREK----GC-NPNVVSFNTLIRGFFGERK-----------------FDEGVN 281 (491)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~ 281 (491)
....+..+...|...|++++|.+.+++..+. +- .....++..+...|...|+ +++|++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3345666777777777777777777776543 10 1123355556666666666 555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011201 282 MAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV-LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG 360 (491)
Q Consensus 282 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 360 (491)
.+++..+.. . +.+. .....++..+...|...|++++|.+.+++..+..
T Consensus 205 ~~~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 205 FYQENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 555443210 0 0000 0011234444555555555555555555544321
Q ss_pred CC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 361 NL-----PSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG--IL---PDSVTFNCLLEDLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 361 ~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 430 (491)
.. .....+..+...|...|++++|.+.+++..+.. .. ....++..+...+...|++++|...+++..+..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00 012255666666777777777777776665431 00 013456666677777777777777777665421
Q ss_pred ----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 431 ----L-DPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 431 ----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
. .....++..+...|.+.|++++|.+.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0 011346667777888888888888888877643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-13 Score=130.54 Aligned_cols=301 Identities=15% Similarity=0.050 Sum_probs=229.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC
Q 011201 187 RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD----VVTFNILISGFCRNKKFDLALGLFREMREK----GCNP 258 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p 258 (491)
......+..+...+...|++++|...|++..+.+.. + ...|..+...+...|++++|...+++..+. +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 456677788889999999999999999998876322 3 357888999999999999999999987543 2111
Q ss_pred -CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------HH
Q 011201 259 -NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE-FS----SVTCEILVDGLCNEGR--------------------VL 312 (491)
Q Consensus 259 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~--------------------~~ 312 (491)
...++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2557888899999999999999999988654211 11 3478888899999999 99
Q ss_pred HHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChH
Q 011201 313 KACELVIDFSRR----GVL-PKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNL-PS----VIACTTLIEGLRRLRKGV 382 (491)
Q Consensus 313 ~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~ 382 (491)
+|.+.++...+. +.. ....++..+...|...|++++|.+.+++..+.... ++ ...|..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999876543 211 12456888899999999999999999988753110 11 347888899999999999
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHH
Q 011201 383 EASGLMEKMLKEGI-LPD----SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD-PD----GMTYHILVSGYTRENRRK 452 (491)
Q Consensus 383 ~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~g~~~ 452 (491)
+|...+++..+... ..+ ..++..+...|...|++++|...++...+.... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998875311 112 557888889999999999999999887653111 11 567888999999999999
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCccc
Q 011201 453 EGENLVNEMLDE----GFIP-DLATYNSYMDGLSNARKSVR 488 (491)
Q Consensus 453 ~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~ 488 (491)
+|.+.+++..+. +..+ ...++..+...+...|+..+
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999987653 2111 24567778888888887644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=132.53 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCh
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLID----GRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD----R-VKPDV 225 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~-~~p~~ 225 (491)
.++..+...|...|++++|+..|++..+... ......++..+...|...|++++|.+.|++..+. + .....
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 4678889999999999999999998876411 1234577889999999999999999999987653 1 11134
Q ss_pred hhHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHH
Q 011201 226 VTFNILISGFCRNKK-----------------FDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEGVNMA 283 (491)
Q Consensus 226 ~~~~~li~~~~~~~~-----------------~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 283 (491)
.++..+...|...|+ +++|++.+++..+. +-.+ ...++..+...|...|++++|++.+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 577888899999999 88898888876542 1111 2346667777778888888888888
Q ss_pred HHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 284 YEMIELGCE-FS----SVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 284 ~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
++..+.... .+ ..++..+...|...|++++|.+.+++..
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 776643211 01 1244555555666666666666665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-13 Score=129.23 Aligned_cols=314 Identities=10% Similarity=-0.025 Sum_probs=148.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhcCCCCCHH
Q 011201 115 IVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRM---NDGLLAFEAMRKLIDGRPSVS 191 (491)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~ 191 (491)
+...+.+.|++++|..+|+.....+.. .++..+...|...|+. ++|+..|++..+. +..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~-------------~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~ 70 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS-------------EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPR 70 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-------------TGGGTCC---------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHH
Confidence 566777889999999999888765422 2233444555556666 7888888777642 556
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCC-------
Q 011201 192 IYNVLINGFVKCR-----EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKF---DLALGLFREMREKGC------- 256 (491)
Q Consensus 192 ~~~~li~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~g~------- 256 (491)
.+..|...+...+ +.++|.+.|++..+.|. ...+..|...|...+.. .++.+.+.+....|.
T Consensus 71 A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~L 147 (452)
T 3e4b_A 71 AQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQ 147 (452)
T ss_dssp CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666555544 67788888887777652 23455555555444332 223333333332221
Q ss_pred -------------------------CCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 257 -------------------------NPNVVSFNTLIRGFFGER---KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 257 -------------------------~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
..+...+..|...|...| +.++|++.|++..+.|.. +...+..+...|...
T Consensus 148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 148 VLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCG
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCC
Confidence 112224555555555555 555555555555555422 333333444444333
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 011201 309 ----GRVLKACELVIDFSRRGVLPKDFDYFGLVEK-L--CGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR-- 379 (491)
Q Consensus 309 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-- 379 (491)
+++++|.++|+... .| +...+..+... | ...++.++|.+.|++..+.| +...+..|...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 45556666665554 22 22334444443 2 34555666666666655554 4445555554444 33
Q ss_pred ---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 011201 380 ---KGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD----VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR----E 448 (491)
Q Consensus 380 ---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~ 448 (491)
+.++|+++|++.. .| +...+..+...|.. ..+.++|..+++...+.| +......|...|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCC
Confidence 5556666655554 22 34444444444443 225556666666555544 23333444444443 2
Q ss_pred CCHHHHHHHHHHHHHCC
Q 011201 449 NRRKEGENLVNEMLDEG 465 (491)
Q Consensus 449 g~~~~A~~~~~~m~~~~ 465 (491)
.+.++|..+|+...+.|
T Consensus 372 ~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 35556666666665554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-13 Score=124.56 Aligned_cols=276 Identities=16% Similarity=0.082 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CChh
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRD----RVK-PDVV 226 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~ 226 (491)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...|...|++++|.+.+++..+. +.. ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44555677778888888888888877763 222 356777777888888888888888775432 111 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCC--------------------HHHHHH
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGC-NPN----VVSFNTLIRGFFGERK--------------------FDEGVN 281 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~ 281 (491)
.+..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 555666666667777777776666544310 011 2244555555555555 555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc-
Q 011201 282 MAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGV-LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK- 359 (491)
Q Consensus 282 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 359 (491)
.+++..+.. ...+. ......+..+...+...|++++|.+.+++..+.
T Consensus 165 ~~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 165 LYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 444433210 00000 001223455555566666666666666655432
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 011201 360 ---GN-LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI-LPD----SVTFNCLLEDLCDVGRTVDADRLRLLASTK- 429 (491)
Q Consensus 360 ---~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 429 (491)
+. ......+..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|++++|...++...+.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 10 00123666777778888888888888877665310 011 456677777888888888888888776543
Q ss_pred ---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 430 ---GLD-PDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 430 ---g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
+.. ....++..+...|.+.|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 110 11346777888899999999999999988754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-12 Score=120.85 Aligned_cols=244 Identities=15% Similarity=0.032 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLI---DG-RPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD---- 224 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~---- 224 (491)
..++..+...+...|++++|+..+++..+.. +. .....++..+...|...|++++|.+.+++..+.... .+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 3577788999999999999999999876541 11 123567888999999999999999999998874211 12
Q ss_pred hhhHHHHHHHHHhcCC--------------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHH
Q 011201 225 VVTFNILISGFCRNKK--------------------FDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 225 ~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a 279 (491)
..++..+...+...|+ +++|.+.+++.... +..+ ....+..+...+...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3377888889999999 88888888876542 1111 133566666777777777777
Q ss_pred HHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 280 VNMAYEMIELGCE-----FSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 280 ~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
.+.+++..+.... ....++..+...+...|++++|...+++..+....
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------- 255 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ--------------------------- 255 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---------------------------
Confidence 7777766543100 01124445555555555555555555544322100
Q ss_pred HHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 355 ELWKKGNL-PSVIACTTLIEGLRRLRKGVEASGLMEKMLKE----GIL-PDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 355 ~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
.+.. ....++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+
T Consensus 256 ----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 256 ----LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0000 01334445555555666666666665555432 100 0123455555666666666666666666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=123.40 Aligned_cols=298 Identities=8% Similarity=-0.060 Sum_probs=208.6
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCC---CCCHHHHHHHHHHH--HhcCCHHHHH-----------HHHHHHhhCCCCCC--
Q 011201 163 AFVKANRMNDGLLAFEAMRKLIDG---RPSVSIYNVLINGF--VKCREFDKAL-----------GFYDRMVRDRVKPD-- 224 (491)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~--~~~~~~~~A~-----------~~~~~m~~~~~~p~-- 224 (491)
.+.+.+++++|..+++++.+..+. .++...|-.++..- .-.+.++.+. +.++.+.......+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 456799999999999998775322 23334444444321 1223344444 66666543211101
Q ss_pred --hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-C---
Q 011201 225 --VVTFNILISGFCRNKKFDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE-F--- 293 (491)
Q Consensus 225 --~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~--- 293 (491)
...+......+...|++++|++.|++..+. +-.+ ...+|..+...|...|++++|++.+++..+.... .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 011222556678899999999999998764 1111 2467888999999999999999999988754211 1
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----CC-
Q 011201 294 --SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL-P----KDFDYFGLVEKLCGEGNAGIALEVVDELWKK----GN- 361 (491)
Q Consensus 294 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~- 361 (491)
...+++.+...|...|++++|...+++..+.... . ...++..+...|...|++++|.+.+++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 2357788889999999999999999987754211 1 1246888999999999999999999998772 22
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCC-
Q 011201 362 LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKE----GILPDSVTFNCLLEDLCDVGR---TVDADRLRLLASTKGLDP- 433 (491)
Q Consensus 362 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~g~~p- 433 (491)
.....++..+...|.+.|++++|.+.+++..+. +-......+..+...+...|+ +++|..+++.. +..+
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~ 337 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYAD 337 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHH
Confidence 334677888999999999999999999988764 111112335667777888888 67777776654 2223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 434 DGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 434 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
....+..+...|...|++++|.+.+++..+
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 245677888999999999999999999875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-11 Score=109.39 Aligned_cols=217 Identities=7% Similarity=-0.019 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHhhC-CCCCChhhHHHHHHHH
Q 011201 171 NDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK-------CREF-------DKALGFYDRMVRD-RVKPDVVTFNILISGF 235 (491)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~A~~~~~~m~~~-~~~p~~~~~~~li~~~ 235 (491)
++|+.+|++..+.. +.+...|..++..+.. .|++ ++|..+|++..+. . +-+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 57778888877753 4567777777777653 4664 6777777776652 2 12445667777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVV-SFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL-CNEGRVLK 313 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~g~~~~ 313 (491)
.+.|++++|.++|++..+.... +.. .|..++..+.+.|++++|..+|++..+.... +...|....... ...|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777664221 222 6666666666677777777777776654321 223332222221 12455666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG-NLP--SVIACTTLIEGLRRLRKGVEASGLMEK 390 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 390 (491)
|..+|+...+.... +...+..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666555544222 34445555555555555555555555555532 122 244455555555555555555555555
Q ss_pred HHH
Q 011201 391 MLK 393 (491)
Q Consensus 391 m~~ 393 (491)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-11 Score=103.38 Aligned_cols=166 Identities=10% Similarity=-0.004 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|.+.+......... +...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5678888888888888888888888888763 456778888888888888888888888887665433 5566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
.+...++++.|.+.+.+..+.... +...+..+...+.+.|++++|++.|++..+.... +..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 788888888888888887776433 5677777888888888888888888887776533 56677777777778888888
Q ss_pred HHHHHHHHHhC
Q 011201 314 ACELVIDFSRR 324 (491)
Q Consensus 314 a~~~~~~~~~~ 324 (491)
|.+.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88877777664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.1e-11 Score=108.37 Aligned_cols=218 Identities=9% Similarity=0.029 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 011201 207 DKALGFYDRMVRDRVKPDVVTFNILISGFC-------RNKKF-------DLALGLFREMREK-GCNPNVVSFNTLIRGFF 271 (491)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-------~~~~~-------~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~ 271 (491)
++|..+|++..... +-+...|..++..+. +.|++ ++|..+|++..+. ... +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 67778888877643 226667777776665 35775 8888888888873 222 5567888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HcCCCHhHH
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSV-TCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKL-CGEGNAGIA 349 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a 349 (491)
+.|++++|.++|+++.+.... +.. +|..++..+.+.|++++|..+|+...+.+.. +...|....... ...|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888874322 233 6777888888888888888888888776432 333343333332 235778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 350 LEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG-ILP--DSVTFNCLLEDLCDVGRTVDADRLRLLA 426 (491)
Q Consensus 350 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 426 (491)
.++|++..+.... +...|..++..+.+.|+.++|..+|++.++.. +.| ....|..++....+.|+.++|..+++.+
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888777765433 56777777777777788888888888777752 344 3556777777777777777777777777
Q ss_pred HHC
Q 011201 427 STK 429 (491)
Q Consensus 427 ~~~ 429 (491)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-12 Score=121.48 Aligned_cols=337 Identities=13% Similarity=0.039 Sum_probs=221.3
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH
Q 011201 91 YDFHIFAWASTIDSFRHDHTTFLFIVRSLASSY-----RFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV 165 (491)
Q Consensus 91 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (491)
.|+..|..+... +...+..+...+...+ ++++|...+++....+.. .++..+...|.
T Consensus 56 ~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-------------~A~~~Lg~~y~ 117 (452)
T 3e4b_A 56 QAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG-------------NTLIPLAMLYL 117 (452)
T ss_dssp --------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS-------------SCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHH
Confidence 345555554432 3445555555444444 667777777777765432 24666677777
Q ss_pred HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---Chh
Q 011201 166 KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK---KFD 242 (491)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~ 242 (491)
..+..+++.+.++.+.+... ..+...+..|...|...+.++++.+....+.+.-...+...+..|...|.+.| +.+
T Consensus 118 ~~~~~~~~~~a~~~~~~a~~-~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 118 QYPHSFPNVNAQQQISQWQA-AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp HCGGGCTTCCHHHHHHHHHH-HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHH
Confidence 66654444333333332210 12455667777778777755544444333322212224558888999999999 999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCCHHHHH
Q 011201 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGE----RKFDEGVNMAYEMIELGCEFSSVTCEILVDG-L--CNEGRVLKAC 315 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~ 315 (491)
+|++.|++..+.|.. +...+..+...|... +++++|+++|++.. .| +...+..+... + ...+++++|.
T Consensus 197 ~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 197 ELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 999999999998754 666667777777655 79999999999987 44 55667777766 4 4689999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCC-----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEG-----NAGIALEVVDELWKKGNLPSVIACTTLIEGLRR----LRKGVEASG 386 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 386 (491)
++|+...+.| +...+..+...|. .| +.++|.+.|++.. .| +...+..|...|.. ..+.++|..
T Consensus 272 ~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 272 KYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 9999999887 5566777777777 55 9999999999988 55 67777778777766 348999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 387 LMEKMLKEGILPDSVTFNCLLEDLCD----VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 387 ~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
+|++..+.|. ......|...|.. ..+.++|..+++...+.|. ++.......+......++.++|.++.++..
T Consensus 344 ~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 344 HLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999998763 3344555555553 4589999999999999873 233333333333344567778888887765
Q ss_pred H
Q 011201 463 D 463 (491)
Q Consensus 463 ~ 463 (491)
+
T Consensus 420 ~ 420 (452)
T 3e4b_A 420 A 420 (452)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-11 Score=103.15 Aligned_cols=162 Identities=14% Similarity=0.046 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
|..+...|.+.|++++|++.|++..+.... +..+|..+...|.+.|++++|+..+......... +...+..+...+..
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHH
Confidence 333333333344444444444433333221 3333333344444444444444444433333211 22333333333333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGL 387 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 387 (491)
.++++.+...+....+.... +...+..+...|.+.|++++|++.|++..+.... +...|..+...|.+.|++++|++.
T Consensus 86 ~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHHHH
Confidence 44444444444333332211 2233333444444444444444444444433222 334444444444444444444444
Q ss_pred HHHHHH
Q 011201 388 MEKMLK 393 (491)
Q Consensus 388 ~~~m~~ 393 (491)
|++.++
T Consensus 164 ~~~al~ 169 (184)
T 3vtx_A 164 FKKALE 169 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.5e-13 Score=121.14 Aligned_cols=174 Identities=16% Similarity=0.129 Sum_probs=134.4
Q ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----
Q 011201 150 CPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLI------DGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD---- 219 (491)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---- 219 (491)
.|....++..+...+...|++++|+.+|+++.+.. .......++..+...|...|++++|.+.+++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999999987731 11234677888999999999999999999987653
Q ss_pred --CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 220 --RV-KPDVVTFNILISGFCRNKKFDLALGLFREMREK------GCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 220 --~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
+- ......+..+...|...|++++|.+.|+++.+. +-.| ....+..+...+...|++++|+++++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 223567788888999999999999999988764 2222 3456778888899999999999999888764
Q ss_pred ------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 290 ------GCEF-SSVTCEILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 290 ------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
+..+ ...++..+...|...|++++|.+.++++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 235677778888888888888888887765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-11 Score=116.85 Aligned_cols=298 Identities=8% Similarity=-0.038 Sum_probs=207.2
Q ss_pred HHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHH--HHHHHcCChhHHH-----------HHHHHHHHhcC
Q 011201 119 LASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAV--NAFVKANRMNDGL-----------LAFEAMRKLID 185 (491)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~-----------~~~~~~~~~~~ 185 (491)
+.+.+++++|..+++++...-.... .......|..++ +...-.+.++.+. +.++.+....
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~------~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~- 94 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQME------EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ- 94 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT-
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC-
Confidence 4457899999999998865321110 011122233332 2222334444444 6777765531
Q ss_pred CCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 186 GRPSVS------IYNVLINGFVKCREFDKALGFYDRMVRDRV-KP----DVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 186 ~~~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
.+.. .+......+...|++++|.+.|++..+.-. .+ ...+|..+...|...|++++|.+.+++..+.
T Consensus 95 --~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 172 (383)
T 3ulq_A 95 --ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172 (383)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1222 222356778889999999999999876411 12 2457888999999999999999999987754
Q ss_pred C--CC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 255 G--CN----PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE-FS----SVTCEILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 255 g--~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
. .. ....+++.+...|...|++++|++.+++..+.... .+ ..++..+...|...|++++|.+.+++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11 12457888899999999999999999988754211 11 24778899999999999999999998876
Q ss_pred C----CC-CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 011201 324 R----GV-LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK----GNLPSVIACTTLIEGLRRLRK---GVEASGLMEKM 391 (491)
Q Consensus 324 ~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m 391 (491)
. +. .....++..+...|.+.|++++|.+.+++..+. +.......+..+...+...|+ .++|+.++++.
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 2 22 334667889999999999999999999987653 111123335667778888888 77777777665
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 392 LKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 392 ~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
+..++ ...+..+...|...|++++|...++...+
T Consensus 333 ---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 ---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22333 44677888899999999999999998765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-13 Score=121.32 Aligned_cols=243 Identities=13% Similarity=0.059 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRD-------RVKPDVVTFNILISGFCRNKKFDLALGLFREMREK------G 255 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g 255 (491)
+..++..+...+...|++++|..+|+++.+. ........+..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777888888888888888888877652 11223455666777777777777777777776553 1
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011201 256 CNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIEL------GC-EFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL 327 (491)
Q Consensus 256 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (491)
-.+ ...++..+...|...|++++|.+.++++.+. +. .....++..+...+...|++++|.++++.+.+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 183 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY-- 183 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--
Confidence 111 2445666666666677777777666666543 11 1112333444444444455555554444443320
Q ss_pred CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCC
Q 011201 328 PKDFDYFGLVEKLCGEGNAGIALEVVDELWKK--GNLP-SVIACTTLIEGLRRLRKGVEASGLMEKMLKE-------GIL 397 (491)
Q Consensus 328 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~ 397 (491)
... +..| ....+..+...|...|++++|.+.++++.+. ...
T Consensus 184 -----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 184 -----------------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -----------------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -----------------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 000 1111 2334555555666666666666666655542 011
Q ss_pred CC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 398 PD-------SVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 398 p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
+. ...+..+...+...+.+.++...++...... ..+..+|..+..+|.+.|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 1112222233344455556666665555432 23456788888899999999999999988764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-12 Score=122.08 Aligned_cols=219 Identities=8% Similarity=-0.144 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011201 206 FDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKF-DLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAY 284 (491)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 284 (491)
++++.+.+++..... ..+...|..+...+...|++ ++|++.|++..+.... +...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555444332 12445555555555555666 6666666555554322 34555555555555555555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC
Q 011201 285 EMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPS 364 (491)
Q Consensus 285 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 364 (491)
+..+.. |+...+..+...|...+.-. ...+.|++++|.+.+++..+.... +
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~--------------------------~~~~~g~~~~A~~~~~~al~~~p~-~ 212 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDS--------------------------GDEHSRHVMDSVRQAKLAVQMDVL-D 212 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSC--------------------------HHHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCC--------------------------hhhhhhhHHHHHHHHHHHHHhCCC-C
Confidence 555432 33344444444444440000 000005555555555555544322 4
Q ss_pred HHHHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 011201 365 VIACTTLIEGLRRL--------RKGVEASGLMEKMLKEGILP----DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD 432 (491)
Q Consensus 365 ~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 432 (491)
...|..+..+|... |++++|++.|++..+. .| +...|..+..+|...|++++|...+++..+.. +
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 289 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-P 289 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 45555555555555 5566666666666553 23 45556666666666666666666666665542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011201 433 PDGMTYHILVSGYTRENRRKEGENLV 458 (491)
Q Consensus 433 p~~~~~~~li~~~~~~g~~~~A~~~~ 458 (491)
-+...+..+..++...|++++|++.+
T Consensus 290 ~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 290 AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23455556666666666666666544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-12 Score=122.92 Aligned_cols=215 Identities=13% Similarity=-0.025 Sum_probs=173.6
Q ss_pred ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 011201 169 RMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREF-DKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL 247 (491)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 247 (491)
++++++..++..... .+.+...+..+...|...|++ ++|++.|++..+.... +...|..+...|.+.|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 366777777776653 245788999999999999999 9999999998876432 578999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------CC
Q 011201 248 FREMREKGCNPNVVSFNTLIRGFFGE---------RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE--------GR 310 (491)
Q Consensus 248 ~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------g~ 310 (491)
|++..+. .|+...+..+...+... |++++|++.|++..+.... +...+..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 9999986 46778899999999999 9999999999999887543 677888888888888 88
Q ss_pred HHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011201 311 VLKACELVIDFSRRGVL--PKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLM 388 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 388 (491)
+++|.+.|+...+.... -+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|++++|++.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888876431 36667788888888888888888888888776543 5667777777777778777777655
Q ss_pred HH
Q 011201 389 EK 390 (491)
Q Consensus 389 ~~ 390 (491)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-11 Score=123.65 Aligned_cols=170 Identities=10% Similarity=0.021 Sum_probs=150.4
Q ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH
Q 011201 149 SCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 228 (491)
++|....+++.+...|.+.|++++|++.|++..+.. +-+..+|+.|..+|.+.|++++|++.|++..+.... +...|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~ 80 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAY 80 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 568889999999999999999999999999999873 456889999999999999999999999998876433 67899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
+.+...|.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.... +...+..+...|...
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhc
Confidence 99999999999999999999999987544 6889999999999999999999999999987643 678899999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 011201 309 GRVLKACELVIDFSR 323 (491)
Q Consensus 309 g~~~~a~~~~~~~~~ 323 (491)
|++++|.+.++++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999888877653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-11 Score=112.21 Aligned_cols=305 Identities=10% Similarity=-0.003 Sum_probs=207.4
Q ss_pred HHHHHHHHHH--HHcCChhHHHHHHHHHHHhcCC---CCCHHHHHHHHHHH--HhcCCHHHHH---------HHHHHHhh
Q 011201 155 RIFHFAVNAF--VKANRMNDGLLAFEAMRKLIDG---RPSVSIYNVLINGF--VKCREFDKAL---------GFYDRMVR 218 (491)
Q Consensus 155 ~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~--~~~~~~~~A~---------~~~~~m~~ 218 (491)
.+-..+-..| ...+++++|..+++++.+.... ..++..|-.|+..- .-.+.+..+. +.++.+..
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 4444455555 7899999999999998764322 22344444444321 1112222222 55555433
Q ss_pred CCCCCC-h---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 219 DRVKPD-V---VTFNILISGFCRNKKFDLALGLFREMREKGC-NPN----VVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 219 ~~~~p~-~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.....+ . ..|......+...|++++|+..|++..+... .++ ..++..+...|...|++++|+..+++..+.
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 170 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI 170 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 211101 1 1223344556789999999999999876411 122 457888899999999999999999988753
Q ss_pred CC-----C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 290 GC-----E-FSSVTCEILVDGLCNEGRVLKACELVIDFSRR----GVL-PKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 290 ~~-----~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
.. . ....+++.+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|.+.+++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 1 12456778889999999999999999887653 111 1234678889999999999999999999877
Q ss_pred -----cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 011201 359 -----KGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI---LPD-SVTFNCLLEDLCDVGR---TVDADRLRLLA 426 (491)
Q Consensus 359 -----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~ 426 (491)
.... ...++..+...|.+.|++++|...+++..+... .+. ...+..+...+...++ +++|..+++.
T Consensus 251 ~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~- 328 (378)
T 3q15_A 251 VSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK- 328 (378)
T ss_dssp HHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-
T ss_pred HHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-
Confidence 4333 367888899999999999999999999887521 122 3445556566667777 6777766665
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 427 STKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 427 ~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
.+..++ ...+..+...|...|++++|.+.|++..+
T Consensus 329 --~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 329 --KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 322222 34667788999999999999999998864
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-10 Score=107.46 Aligned_cols=301 Identities=11% Similarity=-0.002 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCh----
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV----SIYNVLINGFVKCREFDKALGFYDRMVRDRV-KPDV---- 225 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~---- 225 (491)
.+.......+...|++++|...+++...... ..+. .+++.+...+...|++++|.+.+++...... ..+.
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3445556677788999999999998877532 1222 2566777888888999999999888765311 1122
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC----C
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREK----GCN--P-NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF----S 294 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~ 294 (491)
.++..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..+..... .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 23556677788889999998888887653 221 2 23455667778888888888888888877653221 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHH-----HHHHHHHcCCCHhHHHHHHHHHHHcCCCC---CH
Q 011201 295 SVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKD-FDYF-----GLVEKLCGEGNAGIALEVVDELWKKGNLP---SV 365 (491)
Q Consensus 295 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~ 365 (491)
..++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++........ ..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 245666777778888888888888877643211111 1111 22344667788888888877765533211 12
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKE----GILPDS-VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHI 440 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 440 (491)
..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...... +. ..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g 327 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TG 327 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----cc
Confidence 34556667777778888888777776543 211122 244555566677777777777777766642 11 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 441 LVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 441 li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
.+..+...| +....+++.+...
T Consensus 328 ~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 328 FISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp CCHHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHHHcc--HHHHHHHHHHHhC
Confidence 223344444 5666666666644
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-10 Score=105.50 Aligned_cols=275 Identities=9% Similarity=-0.038 Sum_probs=197.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH--
Q 011201 113 LFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV-- 190 (491)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 190 (491)
......+...|++++|...+++........+ ......++..+...+...|++++|...+++.........+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGW------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3445566778999999999999876542100 01122356777888999999999999999877642212232
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----
Q 011201 191 --SIYNVLINGFVKCREFDKALGFYDRMVRD----RVK--P-DVVTFNILISGFCRNKKFDLALGLFREMREKGCN---- 257 (491)
Q Consensus 191 --~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~---- 257 (491)
.+++.+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|.+.+++..+....
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 34677888899999999999999987653 221 2 2345667888899999999999999998765321
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 011201 258 PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS-VTCE-----ILVDGLCNEGRVLKACELVIDFSRRGVLPK-- 329 (491)
Q Consensus 258 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 329 (491)
....++..+...+...|++++|...+++..+....++. ..+. ..+..+...|++++|...++..........
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 12456788888999999999999999998754222111 1121 233457789999999999998876543211
Q ss_pred -HhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 330 -DFDYFGLVEKLCGEGNAGIALEVVDELWKK----GNLPSV-IACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 330 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
...+..+...+...|++++|.+.+++.... |..++. ..+..+...+...|+.++|...+++...
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 224567788899999999999999987653 211122 3566677888899999999999988765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-09 Score=106.19 Aligned_cols=370 Identities=8% Similarity=-0.015 Sum_probs=232.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC---hhHHHHHHHHHHH
Q 011201 106 RHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR---MNDGLLAFEAMRK 182 (491)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 182 (491)
+.|..+|..++..+.+.+.++.+..+++.+... +|.....|...+..-.+.|. ++.+..+|++...
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-----------fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-----------FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 357778888888888888888888888888764 24445677777777777777 8888888888876
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CCC-hhhHHHHHHHHHh---------cCChh
Q 011201 183 LIDGRPSVSIYNVLINGFVKCREF--------DKALGFYDRMVR-DRV-KPD-VVTFNILISGFCR---------NKKFD 242 (491)
Q Consensus 183 ~~~~~~~~~~~~~li~~~~~~~~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~---------~~~~~ 242 (491)
.....|++..|..-+....+.++. +.+.++|+.... .|. .++ ...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 432237777777777666555443 334466666443 355 443 3566655554321 23455
Q ss_pred HHHHHHHHHHHcCCCCCHHHH-----------------------------------------------------------
Q 011201 243 LALGLFREMREKGCNPNVVSF----------------------------------------------------------- 263 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~----------------------------------------------------------- 263 (491)
.+.++|+.........-..+|
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence 666666666542111011122
Q ss_pred --------------HHHHHHHHcCC-------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHH
Q 011201 264 --------------NTLIRGFFGER-------KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC-ELVIDF 321 (491)
Q Consensus 264 --------------~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~ 321 (491)
...+.---..+ ..+.+..+|++....- ..+...|...+..+...|+.++|. ++++..
T Consensus 292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 11111110000 0111223344333321 123444555555566677878886 888888
Q ss_pred HhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC---------CC------------CHHHHHHHHHHHHhcCC
Q 011201 322 SRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGN---------LP------------SVIACTTLIEGLRRLRK 380 (491)
Q Consensus 322 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~~------------~~~~~~~li~~~~~~g~ 380 (491)
.... +.+...+...+...-+.|+++.|.++|+.+..... .| ....|...+....+.|.
T Consensus 371 i~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 371 QQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 7643 33566677788888889999999999998876310 12 13367777887788899
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011201 381 GVEASGLMEKMLKE-GILPDSVTFNCLLEDLCDV-GRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLV 458 (491)
Q Consensus 381 ~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 458 (491)
.+.|..+|.+..+. +. .....|...+..-.+. ++.+.|..+|+...+. ++-+...|...++.....|+.+.|..+|
T Consensus 450 l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp HHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999998875 21 1233343333322333 4589999999988876 4456777788888888889999999999
Q ss_pred HHHHHCCCCC--CHHHHHHHHHHHHhcCCccccc
Q 011201 459 NEMLDEGFIP--DLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 459 ~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
++.+.....+ ....|..+++--.+.|+.+.+.
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998653221 3467888888888888887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-10 Score=96.33 Aligned_cols=166 Identities=17% Similarity=0.113 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+... .+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 3556677777888888888888888776642 34677777888888888888888888888766532 25667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
.+...|++++|.+.++++.+.... +...+..+...+...|++++|.++++++.+... .+..++..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 777888888888888877765332 566777777777777888888887777776542 245666677777777777777
Q ss_pred HHHHHHHHHhC
Q 011201 314 ACELVIDFSRR 324 (491)
Q Consensus 314 a~~~~~~~~~~ 324 (491)
|.+.++...+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777766543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-10 Score=106.32 Aligned_cols=312 Identities=10% Similarity=0.016 Sum_probs=209.5
Q ss_pred CCHHHHHHHHHHH--HhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHH--HHHcCChhHHH--------
Q 011201 107 HDHTTFLFIVRSL--ASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNA--FVKANRMNDGL-------- 174 (491)
Q Consensus 107 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~-------- 174 (491)
|+..+-..+-..+ .+.+++++|..+++++........ .......|..++.. ..-.+.++.+.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~------~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~ 81 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQME------EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTV 81 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBC------CCHHHHHHHHHHHHHHHHHHHTCCC--------CH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHHHhhcCcccccccccch
Confidence 3444445555555 678999999999998765321110 11112233333222 11123333333
Q ss_pred -HHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHhcCChhHHH
Q 011201 175 -LAFEAMRKLIDGRPS---VSIYNVLINGFVKCREFDKALGFYDRMVRDRV-KPD----VVTFNILISGFCRNKKFDLAL 245 (491)
Q Consensus 175 -~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~A~ 245 (491)
+.++.+........+ ...+......+...|++++|...|++..+... .++ ..++..+...|...|+++.|.
T Consensus 82 ~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 82 TELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 666666542100011 11233445667789999999999999876411 122 457788899999999999999
Q ss_pred HHHHHHHHc----C-CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHH
Q 011201 246 GLFREMREK----G-CNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIEL----GCE-FSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 246 ~~~~~m~~~----g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a 314 (491)
..+++..+. + ..+ ...+++.+...|...|++++|++.+++..+. +.. ....++..+...|...|++++|
T Consensus 162 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999987653 1 111 2457888999999999999999999988753 111 1235677888999999999999
Q ss_pred HHHHHHHHh-----CCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCC---hH
Q 011201 315 CELVIDFSR-----RGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGN----LPSVIACTTLIEGLRRLRK---GV 382 (491)
Q Consensus 315 ~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~---~~ 382 (491)
.+.+++..+ .... ...++..+...|.+.|++++|.+.+++..+... ......+..+...+...++ ..
T Consensus 242 ~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~ 320 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIH 320 (378)
T ss_dssp HHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999998876 4333 367788899999999999999999999887421 2223455666666777787 77
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 383 EASGLMEKMLKEGILPD-SVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 383 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
+|+.++++ .+..++ ...+..+...|...|++++|...++...+
T Consensus 321 ~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 321 DLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777765 222222 34566788899999999999999988764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-10 Score=94.74 Aligned_cols=166 Identities=15% Similarity=0.058 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (491)
..+..+...+...|++++|...++.+.... |....++..+...+...|++++|+..++++.+.. +.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~ 75 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDN 75 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC
Confidence 356677888999999999999998876543 3446788899999999999999999999998863 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++.+.... +...+..+...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 153 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFS 153 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHH
Confidence 88899999999999999999999999887642 36788889999999999999999999999887533 67889999999
Q ss_pred HHcCCCHHHHHHHHHHHHHcC
Q 011201 270 FFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~ 290 (491)
+...|++++|.+.++++.+..
T Consensus 154 ~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 154 YEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999987653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-10 Score=117.14 Aligned_cols=167 Identities=12% Similarity=-0.019 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
-+..+|+.|...|.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.... +...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 35788999999999999999999999998876433 5778999999999999999999999999887544 678999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
.+|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.|++.++.... +...+..+..+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999987643 6788999999999999999999999999887644 5677889999999999999
Q ss_pred HHHHHHHHHHH
Q 011201 348 IALEVVDELWK 358 (491)
Q Consensus 348 ~a~~~~~~m~~ 358 (491)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-10 Score=104.32 Aligned_cols=235 Identities=10% Similarity=0.014 Sum_probs=158.2
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------CCCCCHHHHH
Q 011201 121 SSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLI------DGRPSVSIYN 194 (491)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ 194 (491)
..|++++|...+++..+...... -...|....++..+...|...|++++|+..|+++.+.. ..+....++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTS---GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHH---CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34566666666655543210000 00124556788999999999999999999999987652 1223467899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CH
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRD------RV-KPDVVTFNILISGFCRNKKFDLALGLFREMREK------GCNP-NV 260 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~ 260 (491)
.+...|...|++++|.+.|++..+. .- .....++..+...|...|++++|.+.|++..+. +-.| ..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999987664 11 123567888999999999999999999998765 1122 35
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHc-------CCCCCh-hhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCC
Q 011201 261 VSFNTLIRGFFGERKFDEGVNMAYEMIEL-------GCEFSS-VTCEILVDGLCNEGRVL------KACELVIDFSRRGV 326 (491)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~-~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~ 326 (491)
.++..+...|...|++++|.+++++..+. ...+.. ..+..+...+...+... .+...++.... ..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 248 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DS 248 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CC
Confidence 67888999999999999999999988764 122222 23333333333333222 22222211111 11
Q ss_pred CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011201 327 LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK 359 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 359 (491)
.....++..+...|...|++++|.+.+++..+.
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223456888999999999999999999987653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.4e-11 Score=105.62 Aligned_cols=203 Identities=13% Similarity=0.023 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-C
Q 011201 261 VSFNTLIRGFFGERKFDEGVNMAYEMIEL------GC-EFSSVTCEILVDGLCNEGRVLKACELVIDFSRR------G-V 326 (491)
Q Consensus 261 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~ 326 (491)
.++..+...|...|++++|+..++++.+. +- .....++..+...|...|++++|.+.+++..+. . .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555544432 11 112334445555555555555555555554432 1 1
Q ss_pred CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 011201 327 LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKK------GNLP-SVIACTTLIEGLRRLRKGVEASGLMEKMLKE----- 394 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 394 (491)
......+..+...|...|++++|.+.+++..+. +..| ...++..+...|...|++++|.+++++..+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 112345566666666667777666666666553 1111 3456677777777888888888888777653
Q ss_pred --CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH---HHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 395 --GILPD-SVTFNCLLEDLCDVGRTVDADRLRLLA---STKG--LDPDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 395 --~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
...+. ...+..+...+...+....+..+.... ...+ ......++..+...|...|++++|.+++++.++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 222333333333333322222221111 1111 112345678888999999999999999998874
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-09 Score=93.05 Aligned_cols=205 Identities=10% Similarity=-0.023 Sum_probs=158.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011201 259 NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVE 338 (491)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 338 (491)
|...+......+...|++++|++.|++..+....++...+..+..++...|++++|++.++...+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 668888899999999999999999999998875467777877999999999999999999999987654 5677889999
Q ss_pred HHHcCCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 011201 339 KLCGEGNAGIALEVVDELWKKGNLPSV-------IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD---SVTFNCLLE 408 (491)
Q Consensus 339 ~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~ 408 (491)
.|...|++++|.+.+++..+.... +. ..|..+...+...|++++|++.|++.++. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999887543 44 45777888889999999999999999874 565 456666666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYM 477 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 477 (491)
+|...| ..+++.+...+ ..+...|.... ....|.+++|+..+++..+. .|+......++
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 665443 44455555553 23455554443 33457789999999999865 46554444333
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-07 Score=94.93 Aligned_cols=373 Identities=10% Similarity=0.021 Sum_probs=245.2
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHH
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYR---FSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVK 166 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (491)
..+..+|+.+... ++.+...|...+..-.+.+. ++.+..+|++.+..... +.....|..-+....+
T Consensus 83 ~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~---------~~sv~LW~~Yl~f~~~ 151 (679)
T 4e6h_A 83 KQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELG---------NNDLSLWLSYITYVRK 151 (679)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSC---------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCC---------CCCHHHHHHHHHHHHH
Confidence 4466777777654 56677788888888888888 99999999998775310 1335677666665555
Q ss_pred cCCh--------hHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCChhh
Q 011201 167 ANRM--------NDGLLAFEAMRKLIDG-RP-SVSIYNVLINGFVK---------CREFDKALGFYDRMVRDRVKPDVVT 227 (491)
Q Consensus 167 ~~~~--------~~a~~~~~~~~~~~~~-~~-~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~ 227 (491)
.++. +...++|+......|. .+ +...|...+..... .++++.+.++|++.+......-..+
T Consensus 152 ~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~ 231 (679)
T 4e6h_A 152 KNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESM 231 (679)
T ss_dssp HSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHH
T ss_pred hcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHH
Confidence 5543 3345788887765555 44 45678777765442 3456777788877764211111112
Q ss_pred HH---HHHHH-----------------------H----------------------------------------------
Q 011201 228 FN---ILISG-----------------------F---------------------------------------------- 235 (491)
Q Consensus 228 ~~---~li~~-----------------------~---------------------------------------------- 235 (491)
|. .+... +
T Consensus 232 w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~f 311 (679)
T 4e6h_A 232 WQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRW 311 (679)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHH
Confidence 21 10000 0
Q ss_pred -HhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHH
Q 011201 236 -CRNK-------KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGV-NMAYEMIELGCEFSSVTCEILVDGLC 306 (491)
Q Consensus 236 -~~~~-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~ 306 (491)
-..+ ..+.+..+|++....-. -+...|...+.-+.+.|+.++|. ++|++....- +.+...+...+...-
T Consensus 312 Ek~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee 389 (679)
T 4e6h_A 312 ESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYE 389 (679)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 0000 01122334444443321 24556666666677788888996 9999998753 345666777888888
Q ss_pred hcCCHHHHHHHHHHHHhCCC---------CC------------CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc-CCCCC
Q 011201 307 NEGRVLKACELVIDFSRRGV---------LP------------KDFDYFGLVEKLCGEGNAGIALEVVDELWKK-GNLPS 364 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~ 364 (491)
+.|++++|.++|+.+.+... .| ...+|...++...+.|+.+.|.++|....+. +.. .
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~ 468 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-T 468 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-C
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-C
Confidence 99999999999999876410 12 1336788888888889999999999999876 211 2
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 011201 365 VIACTTLIEGLRRL-RKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP--DGMTYHIL 441 (491)
Q Consensus 365 ~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~l 441 (491)
...|...+..-.+. ++.+.|.++|+..++. ..-+...+...+......|+.+.|..+|+........+ ....|...
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33343333333343 4589999999999886 33356677788888888999999999999998864321 35678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 442 VSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDG 479 (491)
Q Consensus 442 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 479 (491)
+..-.+.|+.+.+.++.+++.+. .|+......+++-
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 88888999999999999999976 3554444444433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-09 Score=91.79 Aligned_cols=133 Identities=8% Similarity=0.009 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
+..+......+.+.|++++|+..|++..+.. ..++...+..+..++...|++++|++.|++..+.... +...|..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 4556666666777777777777777766652 1145555555666666677777777777666654322 4455666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNV-------VSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.|.+.|++++|++.|++..+.... +. ..|..+...+...|++++|++.|++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 666666666666666666654322 23 33445555555555666666665555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.2e-09 Score=81.40 Aligned_cols=130 Identities=15% Similarity=0.288 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
++..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|.+.|+++...+. .+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 45566777777788888888887777652 34566777777777777788888877777765432 2455666677777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.+.|++++|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777665332 4566666777777777777777777766654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-09 Score=96.61 Aligned_cols=211 Identities=14% Similarity=0.059 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHH
Q 011201 205 EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK----GCNPN-VVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a 279 (491)
++++|.+.|++. ...|...|++++|.+.|++..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776654 55667777777777777766543 21111 34666677777777777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC-CCHhHHHHHHHHHHH
Q 011201 280 VNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGE-GNAGIALEVVDELWK 358 (491)
Q Consensus 280 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 358 (491)
+..+++..+.. ...|+...+ ..++..+...|... |++++|++.|++..+
T Consensus 97 ~~~~~~Al~l~---------------~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQIF---------------THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHH---------------HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 77776655421 111222111 12344455555554 666666666666554
Q ss_pred cCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 359 KGNLP-S----VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDS------VTFNCLLEDLCDVGRTVDADRLRLLAS 427 (491)
Q Consensus 359 ~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~ 427 (491)
..... + ..+|+.+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|...+++..
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21100 1 245666677777777777777777777764322111 145556666777777777777777665
Q ss_pred HCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 011201 428 TKGLDPDG------MTYHILVSGYT--RENRRKEGENLVNEML 462 (491)
Q Consensus 428 ~~g~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~ 462 (491)
+. .|+. ..+..++.+|. ..+++++|++.|+++.
T Consensus 227 ~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 227 SE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 53 2221 12334455554 3466777777776664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-09 Score=94.49 Aligned_cols=163 Identities=8% Similarity=-0.085 Sum_probs=83.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhc---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----hhhHHH
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLI---DGRP-SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD----VVTFNI 230 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 230 (491)
....|...|++++|++.|++..+.. +..+ ...+|+.+..+|.+.|++++|+..|++..+.... .+ ..+++.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456777888888888887765542 1111 1456777777888888888887777766542100 01 234455
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChh------hH
Q 011201 231 LISGFCRN-KKFDLALGLFREMREKGCNP-N----VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSV------TC 298 (491)
Q Consensus 231 li~~~~~~-~~~~~A~~~~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~ 298 (491)
+...|... |++++|++.|++..+..... + ..++..+...+.+.|++++|+..|++..+........ .+
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 55555553 55555555555544321000 0 2234444555555555555555555554432221110 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 299 EILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 299 ~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
..+..++...|++++|...+++..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444455555555444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-09 Score=80.88 Aligned_cols=129 Identities=16% Similarity=0.249 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFF 271 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 271 (491)
+|..+...+...|++++|.++|+++.+.+. .+...+..+...+...|++++|.+.++++.+.+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 455666667777777777777777665432 24556666666666777777777777776655322 4556666666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
..|++++|.++++++.+.... +..++..+...+.+.|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666777766666666654322 345555555666666666666666655544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-08 Score=90.26 Aligned_cols=104 Identities=6% Similarity=-0.003 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+...+..+...+.+.|++++|...|+.+...... .+....++..+..+|.+.|++++|+..|+++.+.....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT--------HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC--------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 4456666777788888888888888888765321 12225677788888888888888888888888764222
Q ss_pred CC-HHHHHHHHHHHHh--------cCCHHHHHHHHHHHhhC
Q 011201 188 PS-VSIYNVLINGFVK--------CREFDKALGFYDRMVRD 219 (491)
Q Consensus 188 ~~-~~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~ 219 (491)
+. ..++..+..++.. .|++++|.+.|+++.+.
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 22 4567777777777 88888888888887765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.5e-09 Score=92.25 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=82.0
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC-h
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS---VSIYNVLINGFVKCREFDKALGFYDRMVRDRV-KPD-V 225 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~ 225 (491)
+.....+......+.+.|++++|+..|+++.+.. +.+ ..++..+..+|.+.|++++|...|++..+... .|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 4446677788888999999999999999998864 223 67888899999999999999999999887532 112 3
Q ss_pred hhHHHHHHHHHh--------cCChhHHHHHHHHHHHcC
Q 011201 226 VTFNILISGFCR--------NKKFDLALGLFREMREKG 255 (491)
Q Consensus 226 ~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g 255 (491)
..+..+..++.+ .|++++|+..|+++.+..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 456677778888 899999999999988763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-07 Score=84.21 Aligned_cols=237 Identities=9% Similarity=0.010 Sum_probs=143.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR--EFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
+..+.....+...-++|+..++++.... +-+..+||.--..+...+ ++++++++++.+.....+ +..+|+.--..
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~i 112 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLI 112 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHH
Confidence 3333333334444578999999999874 456778998888888888 999999999998886543 55566554444
Q ss_pred H----Hhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 235 F----CRN---KKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFD--EGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 235 ~----~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
+ .+. +++++++++++++.+...+ |-.+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll 190 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4 444 7888888888888887555 7778887777777778777 888888888877644 556666555544
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-H
Q 011201 306 CNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVE-A 384 (491)
Q Consensus 306 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a 384 (491)
.+.|.. . ....++++++.++++....+. |...|+.+-..+.+.|+..+ +
T Consensus 191 ~~l~~~----------------~-------------~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 191 FSKKHL----------------A-------------TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HSSGGG----------------C-------------CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGG
T ss_pred Hhcccc----------------c-------------hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHH
Confidence 444430 0 000134444444444444333 45555555444444444332 3
Q ss_pred HHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 385 SGLMEKMLKEG--ILPDSVTFNCLLEDLCDVGRTVDADRLRLLAST 428 (491)
Q Consensus 385 ~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 428 (491)
..+..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 33433333221 112445555555555555666666666555554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-08 Score=88.25 Aligned_cols=216 Identities=9% Similarity=0.037 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
......++|...|++.... ...|....+..+...+ ..+ |+..|++....+ .++..++..+...+
T Consensus 47 ~~~~~~Rs~iAlg~~~~~~----------~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~ 110 (310)
T 3mv2_B 47 LLFYKAKTLLALGQYQSQD----------PTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQ 110 (310)
T ss_dssp HHHHHHHHHHHTTCCCCCC----------SSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCC----------CCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3344567788877766420 1234444444433333 222 667777666554 34555556677777
Q ss_pred HhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHh--
Q 011201 236 CRNKKFDLALGLFREMREKGC-NPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-----SSVTCEILVDGLCN-- 307 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~-- 307 (491)
...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+..++..
T Consensus 111 ~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~ 188 (310)
T 3mv2_B 111 AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFA 188 (310)
T ss_dssp HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHH
Confidence 777888888888877655543 125566777777777788888888888777665 23 24444445544222
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC-----C----CCCHHHHHHHHHHHH
Q 011201 308 --EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKG-----N----LPSVIACTTLIEGLR 376 (491)
Q Consensus 308 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~----~~~~~~~~~li~~~~ 376 (491)
.+++++|..+|+++.+.. |+..+...++.++.+.|++++|.+.++.+.+.. . .-+..++..+|....
T Consensus 189 ~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~ 266 (310)
T 3mv2_B 189 TNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLAL 266 (310)
T ss_dssp HTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHH
Confidence 236677777777765443 221222333335666666666666666544320 0 114444434444444
Q ss_pred hcCChHHHHHHHHHHHH
Q 011201 377 RLRKGVEASGLMEKMLK 393 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~ 393 (491)
..|+ +|.+++.++.+
T Consensus 267 ~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 267 MQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HTTC--TTHHHHHHHHH
T ss_pred HhCh--HHHHHHHHHHH
Confidence 4454 56666666665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-08 Score=87.53 Aligned_cols=246 Identities=11% Similarity=0.043 Sum_probs=139.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
++-..-.|.+..++.-..++. ...+ ...--.+.++|...|+++.. ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 455556788888877333222 1122 23333455777777776531 11223333444333333 322
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGC-EFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666777666554 33555556777777778888888888877765543 1245666677777777888888888887
Q ss_pred HHHhCCC---CCCHhhHHHHHHHHH----cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 320 DFSRRGV---LPKDFDYFGLVEKLC----GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 320 ~~~~~~~---~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
.|.+... ..+..+...+..++. ..++..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.
T Consensus 161 ~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 161 NYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7766532 112444555554422 2236777777777775543 332233333446677777777777777655
Q ss_pred HCC-----C---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 393 KEG-----I---LP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 393 ~~~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
+.- . .| |..++..++......|+ +|.++++++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 420 0 12 34555455554455565 666777777664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-07 Score=82.90 Aligned_cols=221 Identities=12% Similarity=0.033 Sum_probs=166.2
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN--RMNDGLLAFEAMRKLIDGRPSVSIYNVLING 199 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 199 (491)
....++|+.+.+.++... |....+++.-..++...| +++++++.++.+.... +.+..+|+.-...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-----------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~i 112 (306)
T 3dra_A 46 EEYSERALHITELGINEL-----------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLI 112 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC-----------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHH
Confidence 344468999999887754 555678888888888888 9999999999999864 4566677776666
Q ss_pred H----Hhc---CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 200 F----VKC---REFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFD--LALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 200 ~----~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
+ ... +++++++++++.+.+...+ |-.+|+.-...+.+.|+++ ++++.++++.+.... |...|+.-...+
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll 190 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 6 555 7899999999999987544 7778888777788888888 999999999998766 888998887777
Q ss_pred HcCCC------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHhhHHHHHHHHH
Q 011201 271 FGERK------FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK-ACELVIDFSRRG--VLPKDFDYFGLVEKLC 341 (491)
Q Consensus 271 ~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~ 341 (491)
.+.|+ ++++++.+++++...+. |...|+.+-..+.+.|+... +..+...+.+.+ -..+...+..+...|.
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 77776 88888888888887654 77888877777777776433 444555444332 1224556666666777
Q ss_pred cCCCHhHHHHHHHHHHH
Q 011201 342 GEGNAGIALEVVDELWK 358 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~ 358 (491)
+.|+.++|.++++.+.+
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 77777777777777665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.3e-09 Score=87.06 Aligned_cols=162 Identities=7% Similarity=0.048 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG- 234 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~- 234 (491)
.+......+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|++..... |+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 34566778889999999999999887753 4567888999999999999999999998876653 344333322211
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-SSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~ 313 (491)
+.+.++..+|++.+++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 12223334567777777765433 56777788888888888888888888887765432 34567777777778888888
Q ss_pred HHHHHHHHH
Q 011201 314 ACELVIDFS 322 (491)
Q Consensus 314 a~~~~~~~~ 322 (491)
|...|+..+
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.8e-09 Score=106.94 Aligned_cols=154 Identities=12% Similarity=-0.048 Sum_probs=77.2
Q ss_pred HHcCChhHHHHHHHHHH--------HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 165 VKANRMNDGLLAFEAMR--------KLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
...|++++|++.+++.. +. .+.+...+..+...|.+.|++++|.+.|++..+.... +...|..+...+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 44555555555555554 21 1233444555555555555555555555555443211 3445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
+.|++++|++.|++..+.... +...|..+..++.+.|++++ ++.|++..+.+.. +...+..+..++.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555544322 34455555555555555555 5555555544322 34445555555555555555555
Q ss_pred HHHHHHhC
Q 011201 317 LVIDFSRR 324 (491)
Q Consensus 317 ~~~~~~~~ 324 (491)
.|++..+.
T Consensus 556 ~~~~al~l 563 (681)
T 2pzi_A 556 TLDEVPPT 563 (681)
T ss_dssp HHHTSCTT
T ss_pred HHHhhccc
Confidence 55544433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-08 Score=84.82 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=27.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 266 LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 266 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
+..+|.+.|++++|+..|++..+.... +...+..+...+...|++++|...|+...+.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 444444555555555555554444322 3444444444444555555555555444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.4e-08 Score=82.40 Aligned_cols=162 Identities=14% Similarity=-0.003 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC----CHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 295 SVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEG----NAGIALEVVDELWKKGNLPSVIACTT 370 (491)
Q Consensus 295 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (491)
...+..+...|...+++++|.++|+...+.| +...+..+...|.. + +.++|.+.|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444444444444444444444444444433 22333344444444 3 4555555555554444 3444444
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 371 LIEGLRR----LRKGVEASGLMEKMLKEGIL-PDSVTFNCLLEDLCD----VGRTVDADRLRLLASTKGLDPDGMTYHIL 441 (491)
Q Consensus 371 li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 441 (491)
|...|.. .+++++|+++|++..+.|.. -+...+..|...|.. .++.++|..+++...+. ..+...+..|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 5444444 45555666666555554311 014445555555555 55566666666666554 1233344555
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 011201 442 VSGYTRE-N-----RRKEGENLVNEMLDEG 465 (491)
Q Consensus 442 i~~~~~~-g-----~~~~A~~~~~~m~~~~ 465 (491)
...|... | +.++|.+.|++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5555432 2 5666666666666555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-08 Score=84.29 Aligned_cols=192 Identities=11% Similarity=-0.067 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011201 260 VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEK 339 (491)
Q Consensus 260 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 339 (491)
...+......+.+.|++++|+..|++..+.... +...+.. ...... ..........+..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYW-----TNVDKN--------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHH-----HHSCTT--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHH-----hhhcch--------------hhhhHHHHHHHHHH
Confidence 344445556677788888888888887765321 1222221 000000 00011123347777
Q ss_pred HHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh--
Q 011201 340 LCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRT-- 416 (491)
Q Consensus 340 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~-- 416 (491)
|.+.|++++|...|++..+..+. +...|..+...+...|++++|+..|++.++. .| +...+..+..+|...|..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHH
Confidence 78888888888888888876544 6777888888888888888888888888875 33 466677777666555432
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 417 VDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 417 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
+.+...++.... ..|....+..+..++...|++++|.+.|++.+ .+.|+......+.+
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHHHHH
Confidence 333444444332 12222233344556666788888888888887 45677665554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=8e-09 Score=105.29 Aligned_cols=182 Identities=8% Similarity=-0.049 Sum_probs=144.3
Q ss_pred HhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011201 120 ASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLING 199 (491)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 199 (491)
...+++++|...+++......... .-..|....++..+..++.+.|++++|++.|+++.+.. +.+...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~---~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDAD---GVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC----------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccc---ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHH
Confidence 677999999999999872110000 01124456788999999999999999999999999864 4578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 011201 200 FVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 200 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 279 (491)
|...|++++|.+.|++..+.... +...|..+..++.+.|++++ ++.|++..+.... +...|..+..++.+.|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998876433 67788999999999999999 9999999987544 678999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 280 VNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 280 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
++.|++..+.+.. +...+..+..++...++
T Consensus 554 ~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9999998765422 35566666666655444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-07 Score=81.12 Aligned_cols=176 Identities=13% Similarity=0.035 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----ChhHHHHH
Q 011201 172 DGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK----KFDLALGL 247 (491)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~A~~~ 247 (491)
+|++.|++..+. -+..++..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|++.
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 456666666653 467777777777877888888888888877765 56667777777766 5 77888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----cCCHHHHHHHH
Q 011201 248 FREMREKGCNPNVVSFNTLIRGFFG----ERKFDEGVNMAYEMIELGCE-FSSVTCEILVDGLCN----EGRVLKACELV 318 (491)
Q Consensus 248 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~----~g~~~~a~~~~ 318 (491)
|++..+.| +...+..|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .++.++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88777654 56667777777766 67777888877777766531 014566666666666 66777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcC-C-----CHhHHHHHHHHHHHcC
Q 011201 319 IDFSRRGVLPKDFDYFGLVEKLCGE-G-----NAGIALEVVDELWKKG 360 (491)
Q Consensus 319 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 360 (491)
+...+.+- +...+..|...|... | +.++|.+.|+...+.|
T Consensus 153 ~~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77666511 223455555555432 2 6667777776666655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-07 Score=81.90 Aligned_cols=188 Identities=11% Similarity=0.002 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCh-hhHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PDV-VTFNIL 231 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~-~~~~~l 231 (491)
..+..+...+.+.|++++|+..|+++.+.....+. ..++..+..+|.+.|++++|++.|+++.+.... +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 45666778899999999999999999886422222 467888899999999999999999999875332 111 134444
Q ss_pred HHHHHh------------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 011201 232 ISGFCR------------------NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF 293 (491)
Q Consensus 232 i~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 293 (491)
..++.+ .|++++|+..|+++.+.... +...+...... ..+...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~------ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA------ 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH------
Confidence 444443 45677777777777665221 12222111100 00000000
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC
Q 011201 294 SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK--DFDYFGLVEKLCGEGNAGIALEVVDELWKKGN 361 (491)
Q Consensus 294 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 361 (491)
.....+...|.+.|++++|...|+.+.+...... ...+..+..+|.+.|+.++|.+.++.+...++
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1113456677888888888888888887643321 24577788888888888888888888877653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.3e-08 Score=88.63 Aligned_cols=162 Identities=8% Similarity=0.033 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI-LI 232 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-li 232 (491)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|.+.+++.... .|+...... ..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3444455555666666666666666665542 334555666666666666666666666655443 233322221 11
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-SSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~ 311 (491)
..+.+.++.++|.+.|++..+.... +...+..+...+...|++++|+..|.++.+..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 2244455555566666655554332 45555566666666666666666666665543221 134455555555555555
Q ss_pred HHHHHHHHH
Q 011201 312 LKACELVID 320 (491)
Q Consensus 312 ~~a~~~~~~ 320 (491)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-07 Score=80.41 Aligned_cols=191 Identities=9% Similarity=-0.007 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 109 HTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
...+..+...+.+.|++++|...|+.+...... .+....++..+..++.+.|++++|+..|+++.+.....+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF--------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 345566778889999999999999999875321 123356788899999999999999999999998753333
Q ss_pred CH-HHHHHHHHHHHh------------------cCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHH
Q 011201 189 SV-SIYNVLINGFVK------------------CREFDKALGFYDRMVRDRVKPDV-VTFNILISGFCRNKKFDLALGLF 248 (491)
Q Consensus 189 ~~-~~~~~li~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~ 248 (491)
.. .++..+..++.+ .|++++|...|+++.+.. |+. ..+...... ..+.
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~ 143 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLK 143 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHH
Confidence 32 245555555543 578999999999998763 333 233221110 0011
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011201 249 REMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFS--SVTCEILVDGLCNEGRVLKACELVIDFSRRGV 326 (491)
Q Consensus 249 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 326 (491)
..+ ......+...|.+.|++++|+..|+++.+...... ...+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 144 ~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 144 DRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 111 11223456677788888888888888887643211 24577788888888888888888888777654
Q ss_pred C
Q 011201 327 L 327 (491)
Q Consensus 327 ~ 327 (491)
.
T Consensus 216 ~ 216 (225)
T 2yhc_A 216 N 216 (225)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=82.35 Aligned_cols=139 Identities=10% Similarity=-0.034 Sum_probs=70.2
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011201 121 SSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGF 200 (491)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 200 (491)
..|++++|+..++...... |.....+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-----------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-----------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLY 75 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-----------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-----------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3345555555555543321 2333344455555666666666666666655542 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 201 VKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL-FREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 201 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.+.|++++|...|++..+.... +...|..+...|.+.|++++|.+. +++..+.... +..+|......+...|
T Consensus 76 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666666666666655554221 344555555555555555544433 3444443222 3444444444444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.6e-09 Score=83.87 Aligned_cols=145 Identities=11% Similarity=-0.006 Sum_probs=100.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
...+...|++++|+..++...... +.+...+-.+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 344556677888888887776531 223455667778888888888888888887775433 66778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNM-AYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
+++|+..|++..+.... +..+|..+...|.+.|+++++.+. +++..+.... +..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 88888888888776443 567788888888888887765554 4677665432 55666666666655553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-08 Score=83.28 Aligned_cols=52 Identities=6% Similarity=0.065 Sum_probs=20.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM 286 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (491)
.+.+.|++++|...|++..+.... +...+..+...+.+.|++++|+..+++.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333444444444444433322111 2333444444444444444444444433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.1e-08 Score=96.41 Aligned_cols=155 Identities=10% Similarity=-0.082 Sum_probs=99.1
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
.|++++|++.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.... +...|..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777776642 345677777777888888888888888877765322 56677777777888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 011201 247 LFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE---GRVLKACELVIDFSR 323 (491)
Q Consensus 247 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 323 (491)
.|++..+.... +...|..+..+|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 88877766433 5667777777888888888888888877766432 456677777777777 788888888877776
Q ss_pred CCC
Q 011201 324 RGV 326 (491)
Q Consensus 324 ~~~ 326 (491)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.9e-08 Score=96.11 Aligned_cols=156 Identities=9% Similarity=-0.096 Sum_probs=120.8
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV 201 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 201 (491)
.|++++|...+++..+.. |....++..+...+.+.|++++|++.|++..+.. +.+...|..+...|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-----------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRW 68 (568)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 467888999998876543 4456889999999999999999999999999863 456889999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CCHHH
Q 011201 202 KCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE---RKFDE 278 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~ 278 (491)
..|++++|.+.|++..+.... +...|..+...|.+.|++++|.+.|++..+.... +...+..+...+... |++++
T Consensus 69 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHH
Confidence 999999999999998876432 6778999999999999999999999999887543 678899999999999 99999
Q ss_pred HHHHHHHHHHcCCC
Q 011201 279 GVNMAYEMIELGCE 292 (491)
Q Consensus 279 a~~~~~~m~~~~~~ 292 (491)
|.+.+++..+.+..
T Consensus 147 A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 147 LSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999887643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-07 Score=87.17 Aligned_cols=227 Identities=12% Similarity=0.007 Sum_probs=123.8
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG 246 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 246 (491)
.|++++|.+++++..+... .. + +...+++++|...|.+. ...|...|++++|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 5678888888888776431 11 0 11135566666655543 234555566666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHhcCCHHHHHH
Q 011201 247 LFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGC---EF--SSVTCEILVDGLCNEGRVLKACE 316 (491)
Q Consensus 247 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~g~~~~a~~ 316 (491)
.|.+..+. |-.. -..+|+.+...|.+.|++++|+..|++..+.-. .+ -..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66655432 1000 123556666666666666666666665543210 11 12445556666666 77777777
Q ss_pred HHHHHHhCCCCC-----CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 011201 317 LVIDFSRRGVLP-----KDFDYFGLVEKLCGEGNAGIALEVVDELWKK----GNLPS-VIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 317 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~ 386 (491)
.+++..+..... ...++..+...|.+.|++++|++.|++.... +..+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666654321100 1345666777777777777777777776652 11111 2255556666667788888888
Q ss_pred HHHHHHHCCC--CCC--HHHHHHHHHHHHhcCChHHHHHH
Q 011201 387 LMEKMLKEGI--LPD--SVTFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 387 ~~~~m~~~~~--~p~--~~~~~~ll~~~~~~g~~~~a~~~ 422 (491)
.|++.. ... ... ......++.++ ..|+.+.+..+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 887776 311 111 12344445544 56666666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-08 Score=87.08 Aligned_cols=61 Identities=7% Similarity=-0.000 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMR 252 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 252 (491)
..+..+...+...|++++|.+.|++..+.... +...+..+...+.+.|++++|.+.++++.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 33334444444444444444444444433211 33344444444444444444444444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-05 Score=78.13 Aligned_cols=193 Identities=8% Similarity=-0.119 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011201 278 EGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELW 357 (491)
Q Consensus 278 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 357 (491)
.+..+|+++.... ..+...|...+..+.+.|+.+.|..+++..... +.+...+. .|....+.++. ++.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHH
Confidence 3455666665543 224555555555566666666666666666655 11221111 11111111111 22221
Q ss_pred HcC---------C---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHH
Q 011201 358 KKG---------N---LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD-VGRTVDADRLRL 424 (491)
Q Consensus 358 ~~~---------~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~ 424 (491)
+.- . ......|...+..+.+.+..+.|..+|++. +. ...+...|......-.. .++.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 001233444455555556666666666666 21 11233333322211111 224666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccc
Q 011201 425 LASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNARKSVR 488 (491)
Q Consensus 425 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 488 (491)
...+.. +-+...|...++...+.|+.+.|..+|+++. -....|...+.--...|+.+.
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~ 402 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMEL 402 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHH
Confidence 665532 2234445555555566666666666666651 134455555554444454443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.7e-06 Score=76.65 Aligned_cols=166 Identities=6% Similarity=0.006 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR-EFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
..+++.+-....+.+..++|+++++++.... +-+..+||.--..+...| .+++++++++.+.....+ +..+|+.-.
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~ 130 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3444444444555566688999999999874 456788998888888888 599999999999987654 677787776
Q ss_pred HHHHhc-C-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHcCCCCChhhHHHHH
Q 011201 233 SGFCRN-K-KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFD--------EGVNMAYEMIELGCEFSSVTCEILV 302 (491)
Q Consensus 233 ~~~~~~-~-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~ll 302 (491)
..+.+. + ++++++++++++.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+...
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~ 208 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRW 208 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 666665 6 889999999999987555 7778876655555555555 777777777766543 566666665
Q ss_pred HHHHhcCC-------HHHHHHHHHHHHhC
Q 011201 303 DGLCNEGR-------VLKACELVIDFSRR 324 (491)
Q Consensus 303 ~~~~~~g~-------~~~a~~~~~~~~~~ 324 (491)
..+.+.+. ++++++.+++++..
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 55555554 34444444444444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.7e-06 Score=75.96 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=143.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCCCCH
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKAN-RMNDGLLAFEAMRKLIDGRPSV 190 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~ 190 (491)
+..+...+.+....++|+.+.+.++... |....+++.--..+...| .+++++++++.+.... +.+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-----------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny 123 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-----------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSY 123 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-----------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcH
Confidence 3444444445556678999999998754 555678888888888888 5999999999999853 5678
Q ss_pred HHHHHHHHHHHhc-C-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCH
Q 011201 191 SIYNVLINGFVKC-R-EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFD--------LALGLFREMREKGCNPNV 260 (491)
Q Consensus 191 ~~~~~li~~~~~~-~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~ 260 (491)
.+|+.-..++.+. + ++++++++++.+.+.... |-..|+.-...+.+.|.++ ++++.++++.+.... |.
T Consensus 124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~ 201 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NN 201 (349)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CH
Confidence 8899888888877 7 899999999999987544 7777776666665556666 999999999998766 88
Q ss_pred HHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011201 261 VSFNTLIRGFFGERK-------FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRV 311 (491)
Q Consensus 261 ~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 311 (491)
..|+.....+.+.++ ++++++.++++...... |...|+.+-..+.+.|..
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 999998888888876 68999999999887644 778887776666666553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-07 Score=72.14 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=90.4
Q ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH
Q 011201 149 SCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 228 (491)
..|.....+......|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++..+.... +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHH
Confidence 457777888888999999999999999999988763 457888888999999999999999999988775432 56778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
..+..++...|++++|++.|++..+.... +...+..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 88888888888999998888888876432 44444444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-07 Score=83.20 Aligned_cols=167 Identities=11% Similarity=0.063 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----hh
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV----SIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD----VV 226 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~ 226 (491)
.+...+..+...|++++|...+++..+.....++. ..+..+...+...+++++|++.|++..+.... .+ ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34445778889999999999999988753333332 23445667777778999999999988774222 22 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCCC-h
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREK-----GCNPN-VVSFNTLIRGFFGERKFDEGVNMAYEMIEL----GCEFS-S 295 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~ 295 (491)
+++.+...|...|++++|+..|+++.+. +..+. ..+|..+...|.+.|++++|++.+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6788888888999999999998887741 11111 236777888888888888888888876643 11111 4
Q ss_pred hhHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 011201 296 VTCEILVDGLCNEGR-VLKACELVIDFS 322 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~-~~~a~~~~~~~~ 322 (491)
.+|..+..+|.+.|+ +++|.+.+++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 566777777777774 577777776654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.5e-07 Score=83.53 Aligned_cols=166 Identities=11% Similarity=0.020 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-Chh
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRD----RVKP-DVV 226 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~ 226 (491)
.|..+...|...|++++|+..|.+..+......+ ..+|+.+...|.+.|++++|++.|++..+. |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555566777788888888888776554211111 345677777777777777777777765432 1000 123
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC----CCCC-hh
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKGCNP-----NVVSFNTLIRGFFGERKFDEGVNMAYEMIELG----CEFS-SV 296 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~-~~ 296 (491)
+++.+...|.+ |++++|++.|++..+..... ...++..+...|.+.|++++|+..|++..+.. ..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 45555566655 66666666666654321000 02345555566666666666666666554421 1000 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 297 TCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 297 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
.+..+...+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33334444444555555555555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=5.2e-06 Score=75.09 Aligned_cols=26 Identities=12% Similarity=-0.088 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 367 ACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 367 ~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
+|..+...|.+.|++++|+..+++.+
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-06 Score=75.34 Aligned_cols=126 Identities=12% Similarity=0.069 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
+..+...+...|++++|+..|++.. .++..+|..+...|.+.|++++|.+.|++..+... .+...|..+..++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 3344555555666666666555542 23555555555556666666666666655544321 13445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 237 RNKKFDLALGLFREMREKGCNPNV----------------VSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
+.|++++|++.|++..+.... +. ..+..+..+|.+.|++++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555555544211 11 34444444555555555555555554443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.2e-07 Score=76.01 Aligned_cols=146 Identities=10% Similarity=-0.066 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
..+..+...+...|++++|.+.|++.. .|+...|..+...+.+.|++++|++.|++..+.... +...|..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 345667788889999999999998774 568889999999999999999999999999887533 678999999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011201 271 FGERKFDEGVNMAYEMIELGCEF---------------SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFG 335 (491)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~~---------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (491)
...|++++|++.|++..+..... ....+..+..+|.+.|++++|.+.++...+.........+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 99999999999999998854321 126788889999999999999999999998765544444555
Q ss_pred HHHHHH
Q 011201 336 LVEKLC 341 (491)
Q Consensus 336 li~~~~ 341 (491)
.+..+.
T Consensus 162 a~~~~~ 167 (213)
T 1hh8_A 162 AMECVW 167 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.70 E-value=8.8e-07 Score=72.27 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|.+.+++..+... .+...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3556677778888888888888888887753 34677788888888888888888888888766532 25667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHcCCCHHHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNT--LIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~ 287 (491)
++.+.|++++|.+.|++..+.... +...+.. +...+...|++++|++.+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777888888888888877765332 3444433 3333556677777777766543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-06 Score=75.48 Aligned_cols=164 Identities=7% Similarity=-0.053 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--Hhh
Q 011201 263 FNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS-----VTCEILVDGLCNEGRVLKACELVIDFSRRGVL---PK--DFD 332 (491)
Q Consensus 263 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~ 332 (491)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...++...+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455555666666666666555543221110 11222334445555666666666555432111 11 224
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHH---cCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHH
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWK---KGN-LP--SVIACTTLIEGLRRLRKGVEASGLMEKMLKE----GILP-DSV 401 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~---~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 401 (491)
++.+...|...|++++|.+.+++..+ ... .+ ...+|+.+...|...|++++|+..+++.++. +... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 55555555666666666666655542 110 00 1135555666666666666666666655432 1111 134
Q ss_pred HHHHHHHHHHhcCChHHH-HHHHHHH
Q 011201 402 TFNCLLEDLCDVGRTVDA-DRLRLLA 426 (491)
Q Consensus 402 ~~~~ll~~~~~~g~~~~a-~~~~~~~ 426 (491)
+|..+..+|.+.|+.++| ...++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 555555666666666666 4444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-06 Score=79.70 Aligned_cols=167 Identities=10% Similarity=0.056 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---CC--h
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK---PD--V 225 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~---p~--~ 225 (491)
..+...+..+...|++++|++.+++..+.....++ ...+..+...+...|++++|.+.+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677788888888888888877765321111 122344556667777888888888877643211 11 3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH---c-CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC----CCC-C
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMRE---K-GCNP--NVVSFNTLIRGFFGERKFDEGVNMAYEMIELG----CEF-S 294 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~-~ 294 (491)
.+|+.+...|...|++++|+..|++..+ . +-.+ ...++..+...|.+.|++++|++.+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677777778888888888888877662 1 1111 11466777777777777777777777765431 110 1
Q ss_pred hhhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 011201 295 SVTCEILVDGLCNEGRVLKA-CELVIDF 321 (491)
Q Consensus 295 ~~~~~~ll~~~~~~g~~~~a-~~~~~~~ 321 (491)
..+|..+...|.+.|++++| ...++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34556666666677777766 5555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-06 Score=70.40 Aligned_cols=101 Identities=14% Similarity=-0.016 Sum_probs=73.6
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|.....+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|++.|++..+.... +...|..
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 5566677777777777888888888888777753 446777777777777778888888877777665432 5566777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 011201 231 LISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..+|.+.|++++|.+.|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-06 Score=66.77 Aligned_cols=112 Identities=15% Similarity=0.237 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+...|++++|++.|+++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence 3556666677777777777777777776652 34566667777777777777777777777665432 24556666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
.+.+.|++++|.+.|+++.+.... +...+..+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 120 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 120 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 666777777777777666654322 33444444333
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=5.4e-05 Score=73.64 Aligned_cols=344 Identities=8% Similarity=-0.073 Sum_probs=210.4
Q ss_pred hhhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHcC-CCCCCCCCcccCCchHHHHHHHHHHHH-
Q 011201 89 THYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYR-FSELHSVLNFISAN-PCPCSNDGIFSCPEMERIFHFAVNAFV- 165 (491)
Q Consensus 89 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~- 165 (491)
...+..+|..+... .|+...|...+....+.+. .+....+|+..+.. |. .+.+..+|...+..+.
T Consensus 30 ~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~---------d~~s~~iW~~Yi~f~~~ 97 (493)
T 2uy1_A 30 YRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN---------YWDSYGLYKEYIEEEGK 97 (493)
T ss_dssp HHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT---------CTTCHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC---------CcccHHHHHHHHHHHHh
Confidence 34577888887763 4688888888888877763 45567778776653 21 1233466766666543
Q ss_pred ---HcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 166 ---KANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK-------------CREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 166 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
..++++.+..+|++.... ....-...|......-.. .+.+..|..+++.+...-...+...|.
T Consensus 98 ~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~ 176 (493)
T 2uy1_A 98 IEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAA 176 (493)
T ss_dssp CSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 346788899999999874 111112222222221111 122334455554443210001334565
Q ss_pred HHHHHHHhcC-C------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011201 230 ILISGFCRNK-K------FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILV 302 (491)
Q Consensus 230 ~li~~~~~~~-~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 302 (491)
..+..-...+ . .+.+..+|+++..... -+...|...+.-+.+.|+.++|.++|++.... +.+...+.
T Consensus 177 ~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~--- 250 (493)
T 2uy1_A 177 RLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL--- 250 (493)
T ss_dssp HHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH---
T ss_pred HHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH---
Confidence 5555432211 1 3457789999887643 36788999999999999999999999999987 22332222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---------C---CCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 303 DGLCNEGRVLKACELVIDFSRRG---------V---LPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTT 370 (491)
Q Consensus 303 ~~~~~~g~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (491)
.|....+.++. ++.+.+.- . ......|...+..+.+.++.+.|.++|+.. .. ...+...|..
T Consensus 251 -~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~ 324 (493)
T 2uy1_A 251 -YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIY 324 (493)
T ss_dssp -HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHH
T ss_pred -HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHH
Confidence 22222121221 22222110 0 011245666777777788899999999998 32 2224444543
Q ss_pred HHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 371 LIEGLRR-LRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTREN 449 (491)
Q Consensus 371 li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 449 (491)
....-.. .++.+.|.++|+...+.- .-+...+...++...+.|+.+.|..+|+.+. .....|...+..-...|
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCC
Confidence 2222222 336999999999998862 2234556667777788999999999998873 25788888888778889
Q ss_pred CHHHHHHHHHHHHH
Q 011201 450 RRKEGENLVNEMLD 463 (491)
Q Consensus 450 ~~~~A~~~~~~m~~ 463 (491)
+.+.+.++++++..
T Consensus 399 ~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 399 SMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988874
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-06 Score=67.85 Aligned_cols=121 Identities=10% Similarity=0.120 Sum_probs=85.4
Q ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH
Q 011201 149 SCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 228 (491)
..+.....+..+...+.+.|++++|+..|++..+.. +.+..++..+...+...|++++|.+.+++..+... .+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 87 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGY 87 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHH
Confidence 345667778888888888888888888888887652 34677788888888888888888888888776532 256677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
..+...+.+.|++++|.+.|++..+.... +...+..+...+.+.
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence 77777777788888888888777665322 344555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-06 Score=70.41 Aligned_cols=129 Identities=10% Similarity=0.116 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...+...|++++|...|++..+... .+...+..+...+...|++++|.+.+++..+.... +...|..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 34566777778888888888888888766532 25667777778888888888888888887776432 56677777778
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCE--ILVDGLCNEGRVLKACELVIDF 321 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~ 321 (491)
+...|++++|...|++..+.... +...+. .....+...|++++|.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88888888888888887765432 333332 2333355667777777766554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-06 Score=67.90 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=83.1
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
+.....+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 85 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHH
Confidence 3345667777777888888888888888877653 34667777777778888888888888877766432 24566677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERK 275 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 275 (491)
+...+.+.|++++|.+.|++..+.... +...+..+..++.+.|+
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 777777777777777777777665332 45566666666655554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-06 Score=66.43 Aligned_cols=113 Identities=16% Similarity=0.300 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...|..+...+...|++++|.+.|+++.+... .+...+..+...+.+.|++++|...|+++.+.... +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 56677777778888888888888887766432 25666777777777788888888888777765332 56677777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
+...|++++|...++++.+.... +...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 77777777777777777765422 334444444333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-06 Score=67.37 Aligned_cols=99 Identities=9% Similarity=0.127 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.|++..+.... +...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 355666777777778888888887777665322 5667777777777777777777777777765433 56677777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcC
Q 011201 270 FFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~ 290 (491)
+...|++++|++.|++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 777777777777777777654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.4e-07 Score=76.39 Aligned_cols=155 Identities=12% Similarity=-0.020 Sum_probs=86.7
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcC
Q 011201 165 VKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD----RVK-PDVVTFNILISGFCRNK 239 (491)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~~ 239 (491)
...|++++|.+.++.+... ......+++.+...+...|++++|.+.+++.... +.. ....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4567788888755555431 1235667777778888888888888888776551 111 12345666666777777
Q ss_pred ChhHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCC--hhhHHHHHHHHHhc
Q 011201 240 KFDLALGLFREMREK----GCNP--NVVSFNTLIRGFFGERKFDEGVNMAYEMIELG---CEFS--SVTCEILVDGLCNE 308 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~--~~~~~~ll~~~~~~ 308 (491)
++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777765543 1111 13345566666666777777777666654321 0000 12234445555555
Q ss_pred CCHHHHHHHHHHH
Q 011201 309 GRVLKACELVIDF 321 (491)
Q Consensus 309 g~~~~a~~~~~~~ 321 (491)
|++++|.+.+++.
T Consensus 161 g~~~~A~~~~~~a 173 (203)
T 3gw4_A 161 KNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 5665555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-06 Score=75.93 Aligned_cols=196 Identities=8% Similarity=-0.017 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCCCh---
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVL-------INGFVKCREFDKALGFYDRMVRDRVKPDV--- 225 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~~~~p~~--- 225 (491)
.|..-+. + ..++...|.+.|.++.+.. +-....|+.+ ...+.+.++..+++..+..-.+ +.|+.
T Consensus 10 ~~~~~~~-~-~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a 83 (282)
T 4f3v_A 10 LFESAVS-M-LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNA 83 (282)
T ss_dssp HHHHHHH-H-TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCC
T ss_pred HHHHHhc-c-cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhh
Confidence 3444443 3 6899999999999999874 4467888887 4666666666666665555433 22221
Q ss_pred -------------------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011201 226 -------------------VTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM 286 (491)
Q Consensus 226 -------------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (491)
..+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 122335566778888888888888877654 33335556666788888888888888754
Q ss_pred HHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011201 287 IELGCEF--SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK--DFDYFGLVEKLCGEGNAGIALEVVDELWKKG 360 (491)
Q Consensus 287 ~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 360 (491)
.+.. .+ ....+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 162 ~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 162 GKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3321 11 123566677777888888888888887764433233 2244555666667777777777777777654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=6.2e-07 Score=80.65 Aligned_cols=98 Identities=10% Similarity=0.025 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.... +...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4566677777788888888888888877753 346777777778888888888888888877665322 5566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 011201 234 GFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+|.+.|++++|++.|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-06 Score=66.98 Aligned_cols=119 Identities=8% Similarity=0.110 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
.+...|..+...+.+.|++++|.+.|++..+... .+...+..+...+...|++++|++.+++..+.... +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 4566777888888888888888888888776532 25667777777888888888888888887775433 567777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEG 309 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 309 (491)
.++.+.|++++|.+.|++..+.... +...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 7888888888888888877765322 3344455555544433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=82.49 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+.+.|++++|.+.|++..+.... +...|..+..+|.+.|++++|++.+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4566777888888888888888888887765322 6677888888888888888888888888776433 5677888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHc
Q 011201 269 GFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~ 289 (491)
++...|++++|+..|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.3e-07 Score=75.24 Aligned_cols=121 Identities=12% Similarity=-0.000 Sum_probs=66.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCC
Q 011201 201 VKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERK 275 (491)
Q Consensus 201 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~ 275 (491)
...|++++|.+.++.+... .......+..+...+...|++++|...+++..+. |..+ ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3457777777755444331 1224556667777777777777777777776552 1111 23455666666777777
Q ss_pred HHHHHHHHHHHHHc----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 276 FDEGVNMAYEMIEL----GCEF--SSVTCEILVDGLCNEGRVLKACELVIDFS 322 (491)
Q Consensus 276 ~~~a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 322 (491)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777777665543 1011 12334555555666666666666665544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-06 Score=79.85 Aligned_cols=126 Identities=14% Similarity=0.094 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 152 EMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS-------------VSIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
.....+..+...+.+.|++++|+..|++..+.....++ ..+|..+..+|.+.|++++|++.|++..+
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456667777777777777777777777765311110 35555555566666666666666665554
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 011201 219 DRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEG 279 (491)
Q Consensus 219 ~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 279 (491)
.... +...|..+..+|...|++++|++.|++..+.... +...+..+..++.+.|+.+++
T Consensus 225 ~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4221 4445555555555555565555555555554322 344555555555555555555
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=72.43 Aligned_cols=124 Identities=10% Similarity=0.189 Sum_probs=99.3
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCCh-
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG-FCRNKKF- 241 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~- 241 (491)
+...|++++|+..+++..+.. +.+...|..+...|...|++++|.+.|++..+.... +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 346788999999999988763 457888999999999999999999999998775422 66777778888 7788998
Q ss_pred -hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 011201 242 -DLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGC 291 (491)
Q Consensus 242 -~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 291 (491)
++|.+.|++..+.... +...+..+...|...|++++|...|+++.+...
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999887543 577888899999999999999999999887653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.2e-07 Score=78.26 Aligned_cols=190 Identities=6% Similarity=-0.099 Sum_probs=143.0
Q ss_pred hcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHhcCCCCC----
Q 011201 121 SSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFA-------VNAFVKANRMNDGLLAFEAMRKLIDGRPS---- 189 (491)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 189 (491)
..++...|.+.|.++.... |.+...|..+ ...+.+.++..+++..+...... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-----------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l---~p~~l~a 83 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-----------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI---SMSTLNA 83 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC---CGGGGCC
T ss_pred cCCCHHHHHHHHHHHHHhC-----------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC---Chhhhhh
Confidence 5799999999999998754 6667888877 57777777777777666655442 121
Q ss_pred ------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 190 ------------------VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 190 ------------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 2334456778889999999999999987654 44335666667899999999999999865
Q ss_pred HHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011201 252 REKGCNPN--VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFS--SVTCEILVDGLCNEGRVLKACELVIDFSRRGVL 327 (491)
Q Consensus 252 ~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (491)
.... .|. ...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++......
T Consensus 162 ~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 162 GKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred hccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 5431 111 34678888999999999999999999985443243 335566777888999999999999999987544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-06 Score=69.30 Aligned_cols=125 Identities=11% Similarity=-0.008 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
.+...+.+.+...+.+++++++ .+.+...+..+...+.+.|++++|.+.|++....... +...|..+..+
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l---------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~ 79 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAI---------PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAI 79 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCS---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHhCC---------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444555555555544444221 1234567778888888889999999999888776433 67788888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+..
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88889999999999888876544 57788888888888899999988888888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00012 Score=66.34 Aligned_cols=140 Identities=12% Similarity=-0.000 Sum_probs=95.7
Q ss_pred HHHcCChh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 164 FVKANRMN-DGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE----------FDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 164 ~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
..+.|.+. +|+..++.+.... +-+..+||.--..+...+. +++++.+++.+.....+ +..+|+.-.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~ 115 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRC 115 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34556654 7889999888763 3456667766555544443 57788888888775433 666777666
Q ss_pred HHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 233 SGFCRNK--KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERK-FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 233 ~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
..+.+.+ ++++++++++++.+.... |..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 6666666 478888888888887655 77788777777777777 57888888888877644 666666655554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-06 Score=65.78 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+...|++++|.+.|++...... .+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 455666777777777888888888777765432 25566777777777777777777777777765332 4666777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011201 269 GFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGR 310 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 310 (491)
.+...|++++|...+++..+.... +...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 777777777777777777665432 44555555555555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=9e-07 Score=73.35 Aligned_cols=120 Identities=9% Similarity=-0.003 Sum_probs=73.8
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--HH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLED-LCDVGRT--VD 418 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~--~~ 418 (491)
..|++++|.+.+++..+.... +...|..+...|...|++++|...|++..+... .+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 456666677676666655432 556666677777777777777777777666421 245555556655 5566776 77
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011201 419 ADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDE 464 (491)
Q Consensus 419 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 464 (491)
|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777766653 234566666677777777777777777777654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.2e-06 Score=64.77 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.... +...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 4566777788888888888888888887763 446778888888888888888888888887765422 5667777788
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 011201 234 GFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~ 254 (491)
++...|++++|.+.|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888877765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=69.93 Aligned_cols=101 Identities=10% Similarity=-0.065 Sum_probs=61.7
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|.....+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|.+.|++....... +...|..
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~ 94 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 4444555666666666677777777766666542 345666666666666666666666666666554322 4455555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 011201 231 LISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..+|...|++++|.+.|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-07 Score=76.65 Aligned_cols=151 Identities=13% Similarity=-0.015 Sum_probs=79.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC--------------h
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD--------------V 225 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~--------------~ 225 (491)
+......|+++++.+.++.-.... ......+..+...+.+.|++++|.+.|++..+.... ++ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 344445566666655554332210 123455667777777888888888888877664221 10 1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
..|..+..+|.+.|++++|+..+++..+.... +...+..+..+|...|++++|++.|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 45555666666666666666666666655322 4556666666666666666666666666654322 344455555555
Q ss_pred HhcCCHHHHH
Q 011201 306 CNEGRVLKAC 315 (491)
Q Consensus 306 ~~~g~~~~a~ 315 (491)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00033 Score=63.53 Aligned_cols=174 Identities=6% Similarity=-0.011 Sum_probs=126.4
Q ss_pred HHHhcCChh-HHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCC
Q 011201 118 SLASSYRFS-ELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR----------MNDGLLAFEAMRKLIDG 186 (491)
Q Consensus 118 ~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~ 186 (491)
...+.|.++ +|+.+...++..+ |....+|+.--..+...++ +++++.+++.+....
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n-----------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-- 104 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN-----------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-- 104 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC-----------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-----------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--
Confidence 334556665 7899999988765 4445666655444444333 688999999998863
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHH
Q 011201 187 RPSVSIYNVLINGFVKCR--EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK-FDLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 187 ~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
+.+..+|+.-..++.+.+ .+++++++++.+.+.... |-..|+.-...+...|. ++++++.++++.+..+. |..+|
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW 182 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSW 182 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 568889998888888888 489999999999987644 77888887777788888 59999999999998766 88888
Q ss_pred HHHHHHHHcC--------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 264 NTLIRGFFGE--------------RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 264 ~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
+.....+.+. +.++++++.+.+.....+. |...|+-+-..+.+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 8776665544 3467777777777766533 56666544444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.6e-06 Score=77.77 Aligned_cols=151 Identities=13% Similarity=0.039 Sum_probs=103.9
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------------hhhHHHHH
Q 011201 167 ANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD--------------VVTFNILI 232 (491)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--------------~~~~~~li 232 (491)
.+++++|+..|+...... +.+...|..+...|.+.|++++|.+.|++..+...... ...|..+.
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 344556665555444321 12567788899999999999999999999877542211 36777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
.+|.+.|++++|++.|++..+.... +...|..+..+|...|++++|+..|++..+.... +...+..+..++.+.|+.+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888877776433 5677777777777788888888887777766432 4566666777777777777
Q ss_pred HH-HHHHHHH
Q 011201 313 KA-CELVIDF 321 (491)
Q Consensus 313 ~a-~~~~~~~ 321 (491)
++ ...+..|
T Consensus 282 ~a~~~~~~~~ 291 (336)
T 1p5q_A 282 AREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 66 3344444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=9.6e-07 Score=70.80 Aligned_cols=99 Identities=11% Similarity=-0.010 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+.+.|++++|...|+........ +...|..+..+|.+.|++++|++.|++....... +...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 4555666677777777777777777776654322 5666667777777777777777777777665433 5566667777
Q ss_pred HHHcCCCHHHHHHHHHHHHHc
Q 011201 269 GFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~ 289 (491)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-05 Score=59.84 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|.+.+++..+.... +...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 456666777777888888888888777653 346677777777777778888888877777665322 45666677777
Q ss_pred HHhcCChhHHHHHHHHHHHcC
Q 011201 235 FCRNKKFDLALGLFREMREKG 255 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g 255 (491)
+.+.|++++|.+.+++..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 777777777777777776653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.5e-06 Score=65.33 Aligned_cols=101 Identities=13% Similarity=-0.048 Sum_probs=68.6
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
|.....+..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...|++....... +...|..
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 91 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHH
Confidence 4445566666777777777777777777777653 346666777777777777777777777776665322 4556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 011201 231 LISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..+|...|++++|.+.|++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777777777777777766554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-05 Score=62.05 Aligned_cols=98 Identities=10% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...|..+...+.+.|++++|.+.|++..+.... +...|..+..++.+.|++++|++.|++..+.... +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 345666777777778888888888777665322 5667777777777778888888877777766433 56677777777
Q ss_pred HHcCCCHHHHHHHHHHHHHc
Q 011201 270 FFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~ 289 (491)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.2e-05 Score=74.12 Aligned_cols=209 Identities=9% Similarity=-0.033 Sum_probs=145.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccC------CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC
Q 011201 115 IVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSC------PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 188 (491)
-.+.+.+.|++++|.+.+..+............... .....++..++..|.+.|++++|.+.+..+.+..+..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 356778899999999999998875443221111100 12235678889999999999999999998876533222
Q ss_pred CH----HHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CC-
Q 011201 189 SV----SIYNVLINGFVKCREFDKALGFYDRMVR----DRVKPD-VVTFNILISGFCRNKKFDLALGLFREMREK--GC- 256 (491)
Q Consensus 189 ~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~- 256 (491)
+. .+.+.+-..+...|+.++|.++++.... .+..+. ..++..+...|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 2234444455566899999999887654 222222 456778899999999999999999987653 11
Q ss_pred -CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 257 -NP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIEL--GCEFS----SVTCEILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 257 -~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
.+ ....+..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2457888899999999999999999887643 11111 24556666777888999999888877653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-05 Score=59.42 Aligned_cols=99 Identities=11% Similarity=0.044 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...+...|++++|.+.|++...... .+...+..+...+.+.|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 44566666667777777777777777665432 24556666666677777777777777776665332 45566666666
Q ss_pred HHcCCCHHHHHHHHHHHHHcC
Q 011201 270 FFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~ 290 (491)
+...|++++|.+.+++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 667777777777776666543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.3e-05 Score=73.16 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=29.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPN----------------VVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445566777777777777666532211 0124445555555566665555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-05 Score=62.46 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CC----hhh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PD----VVT 227 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~----~~~ 227 (491)
..++..+...+.+.|++++|+..|++..+.. +.+..+|+.+..+|.+.|++++|++.|++..+.... .+ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4567778888888999999999998888763 456778888888888888888888888887653211 11 124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
|..+..++...|++++|++.|++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555666666777777777777766553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-05 Score=64.31 Aligned_cols=101 Identities=8% Similarity=-0.047 Sum_probs=78.7
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
+.....+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.... +...|..
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 84 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSR 84 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 4456677788888888888888888888888763 346778888888888888888888888887775422 5667777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 011201 231 LISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+..+|.+.|++++|.+.|++..+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888887765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-05 Score=68.31 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS--------------VSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
...+..+...+.+.|++++|+..|++..+.....++ ..+|..+..+|.+.|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356777888899999999999999999886422221 278889999999999999999999998876
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHc
Q 011201 220 RVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGV-NMAYEMIEL 289 (491)
Q Consensus 220 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~ 289 (491)
.. .+...+..+..+|...|++++|++.|++..+.... +...+..+..++...++.+++. ..+..|...
T Consensus 118 ~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 42 36778889999999999999999999999887433 6677888877777777766665 445555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=7.2e-06 Score=63.47 Aligned_cols=109 Identities=7% Similarity=0.126 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----hhh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRV--KPD----VVT 227 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~ 227 (491)
...+..+...+...|++++|+..|++..+.. +.+...+..+...|...|++++|...+++...... .++ ...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4566777788888888888888888887753 34677788888888888888888888887765421 112 556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
|..+...+.+.|++++|.+.|++..+.. |+...+..+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 6666777777777777777777776653 344444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-05 Score=61.76 Aligned_cols=98 Identities=11% Similarity=-0.117 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 443 (491)
+...|..+...+...|++++|+..|++.++.. .-+...+..+..++...|++++|...++...+.. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44555555666666666666666666655542 1235555566666666666666666666665543 224556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011201 444 GYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~ 463 (491)
+|...|++++|.+.|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-05 Score=64.07 Aligned_cols=100 Identities=12% Similarity=-0.042 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+...+..+...+.+.|++++|.+.|+........ +...|..+..++.+.|++++|+..|++....... +...|..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 4555667777888888888888888888775432 6677788888888888888888888888876543 5677778888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcC
Q 011201 269 GFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 269 ~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
+|...|++++|.+.|++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888877653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-05 Score=64.45 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
.+...|..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.|++..+.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 35667888888899999999999999988776432 6778888888999999999999999998887543 678888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcC
Q 011201 268 RGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
.+|...|++++|++.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999888764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.7e-06 Score=60.74 Aligned_cols=98 Identities=8% Similarity=-0.021 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CChhhHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PDVVTFNILIS 233 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~ 233 (491)
..+..+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|.+.|++..+.... .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 445566677777777777777777777653 345666777777777777777777777777665211 13556666677
Q ss_pred HHHhc-CChhHHHHHHHHHHHc
Q 011201 234 GFCRN-KKFDLALGLFREMREK 254 (491)
Q Consensus 234 ~~~~~-~~~~~A~~~~~~m~~~ 254 (491)
.+.+. |++++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777776655
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.9e-05 Score=61.62 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=73.4
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVV 226 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 226 (491)
+.....+..+...+...|++++|+..|++..+. .|+ ...|..+...|...|++++|.+.+++..+.... +..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHH
Confidence 445667777788888888888888888888765 244 566777777788888888888888777664322 456
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
.|..+..++...|++++|.+.|++..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6677777777778888888877777765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-05 Score=61.59 Aligned_cols=97 Identities=10% Similarity=0.033 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...|++..+.... +...|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 4556666666666666666666666666542 334556666666666666666666666665554322 4455555566
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 011201 234 GFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~ 253 (491)
++...|++++|.+.|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.3e-05 Score=60.03 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD----VVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSF 263 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 263 (491)
.+...+..+...+...|++++|.+.|++..+. .|+ ...|..+...|.+.|++++|++.+++..+.... +...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 46777888888888889999999999888765 344 567777788888888888888888887776332 56777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 264 NTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 264 ~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
..+..++...|++++|...|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 778888888888888888888877654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-05 Score=60.72 Aligned_cols=108 Identities=12% Similarity=0.046 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHH
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL--DPD----GMTYH 439 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~p~----~~~~~ 439 (491)
..+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..++...+... ..+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345555666666666667776666666642 11355666666666677777777666666554310 111 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011201 440 ILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSY 476 (491)
Q Consensus 440 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 476 (491)
.+..++...|++++|++.|++.++. .||..+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 6667777778888888888777643 4565554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-05 Score=61.72 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHH
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL--DPD----GMTYH 439 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~p~----~~~~~ 439 (491)
..|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|...++.+.+... .++ ...|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344555555566666666666666655542 22445555556666666666666666665554321 111 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011201 440 ILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLS 481 (491)
Q Consensus 440 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 481 (491)
.+..+|.+.|++++|.+.|+++.+. .|+...+..+.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 6666677777777777777776653 345555554444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.9e-05 Score=58.05 Aligned_cols=60 Identities=3% Similarity=0.114 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
+..+...+...|++++|...|++..+... .+...|..+...+.+.|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33344444444444444444444333221 1233333344444444444444444444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-05 Score=63.75 Aligned_cols=134 Identities=14% Similarity=0.122 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS----VSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD---- 224 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~---- 224 (491)
..++..+...+...|++++|+..+++..+......+ ..++..+...+...|++++|.+.+++..+.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456777788888889999998888887664211112 246777777788888888888887776542100 01
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 225 VVTFNILISGFCRNKKFDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
...+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 234555556666666666666666655432 1000 12234444444555555555555555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=2.1e-05 Score=60.38 Aligned_cols=95 Identities=15% Similarity=0.028 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3455667778888888888888888763 446778888888888888888888888887775432 5667777888888
Q ss_pred hcCChhHHHHHHHHHHHc
Q 011201 237 RNKKFDLALGLFREMREK 254 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~ 254 (491)
+.|++++|++.|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-05 Score=62.85 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 011201 369 TTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 369 ~~li~~~~~~g~~~~a~~~~~~m 391 (491)
..+...+...|++++|.+.+++.
T Consensus 133 ~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 133 WSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 33344444444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.5e-05 Score=59.06 Aligned_cols=88 Identities=11% Similarity=-0.051 Sum_probs=37.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
..+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+.... +...+..+..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 3344444444444444444443221 3344444444444444444444444444443321 2333444444444444444
Q ss_pred HHHHHHHHHH
Q 011201 313 KACELVIDFS 322 (491)
Q Consensus 313 ~a~~~~~~~~ 322 (491)
+|...++...
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.11 E-value=4.2e-05 Score=73.81 Aligned_cols=138 Identities=6% Similarity=0.012 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+......+.+.|++++|+..|++..+.....++. .-+...+ ...+ ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~~~~~~-~~~~-------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL--------------SEKESKA-SESF-------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--------------CHHHHHH-HHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC--------------ChHHHHH-HHHH-------HHHHHHHHHH
Confidence 4556666777777777777777777766653211110 0000000 0000 1234455555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|+..|++..+.... +...+..+..++.+.++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544322 4455555555555555555555555555544321 33445555555555555554
Q ss_pred HH
Q 011201 314 AC 315 (491)
Q Consensus 314 a~ 315 (491)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00011 Score=56.75 Aligned_cols=94 Identities=14% Similarity=0.060 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHH
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV---SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD---VVTFNIL 231 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l 231 (491)
..+...+.+.|++++|+..|+++.+... .+. .++..+..++.+.|++++|...|++..+.... + ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 3456667778888888888888777531 222 46667777778888888888888877665322 2 4456667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 011201 232 ISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 232 i~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
..++.+.|++++|.+.|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.03 E-value=4.4e-05 Score=74.09 Aligned_cols=123 Identities=11% Similarity=0.137 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
..+...+.+.|++++|.+.|++..+.... +...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|.+.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 33445566777888888888877665322 4667777777788888888888888877776433 566777777777788
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDG--LCNEGRVLKACELVI 319 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 319 (491)
|++++|++.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888777765432 33344444444 666677777777766
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=77.25 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.... +...|..+..+|.+.|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3445678999999999999998873 456899999999999999999999999999887433 6788999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRG--FFGERKFDEGVNMAY 284 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 284 (491)
++++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999886433 34455555555 888899999999988
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00027 Score=54.43 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDV---VTFNILISGFCRNKKFDLALGLFREMREKGCNPN---VVSFNTLI 267 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~li 267 (491)
..+...+.+.|++++|.+.|+...+.... +. ..+..+..++.+.|++++|...|++..+.... + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34556666777777777777777664321 22 35666667777777777777777777765332 2 45566677
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcC
Q 011201 268 RGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
.++.+.|++++|...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777777776653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00037 Score=68.94 Aligned_cols=176 Identities=14% Similarity=-0.005 Sum_probs=135.0
Q ss_pred HcCC-hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 166 KANR-MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE----------FDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 166 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
+.|. -++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-...
T Consensus 40 ~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~ 116 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444 567899999999874 4567778888777777777 89999999999887544 67788887778
Q ss_pred HHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---
Q 011201 235 FCRNK--KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER-KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE--- 308 (491)
Q Consensus 235 ~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--- 308 (491)
+.+.+ +++++++.++++.+.... |..+|+.-...+.+.| .++++++.++++.+..+. +...|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence 88888 779999999999998666 8889988888888888 899999999999887654 777787776666553
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh
Q 011201 309 -----------GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG 347 (491)
Q Consensus 309 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 347 (491)
+.++++.+.++........ +...|..+-..+.+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4567888888877776544 5566666666666666533
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.00 E-value=8.8e-05 Score=69.29 Aligned_cols=138 Identities=10% Similarity=0.023 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+..+...+.+.|++++|+..|++..+.. ++.. .....+++.+ .. .-+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~-------~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAK-------LQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGG-------GH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHH-------HH-HHHHHHHHHHHHH
Confidence 346667777888888888888888776521 0000 0000000000 00 0123445555555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKA 314 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 314 (491)
|.+.|++++|++.+++..+.... +...|..+..+|...|++++|++.|++..+.... +...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544222 3445555555555555555555555555544322 344444444555555554444
Q ss_pred H
Q 011201 315 C 315 (491)
Q Consensus 315 ~ 315 (491)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.99 E-value=9.6e-05 Score=71.31 Aligned_cols=166 Identities=8% Similarity=-0.028 Sum_probs=112.2
Q ss_pred CChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 011201 168 NRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL 247 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 247 (491)
+++++|+..|+...... ......|..+...|.+.|++++|...|++..+.. |+...+ .-+..
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~--- 309 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKES--- 309 (457)
T ss_dssp EEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHH---
T ss_pred hhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHH---
Confidence 34445554444333221 1235567777788888888888888888776531 111100 00111
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011201 248 FREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL 327 (491)
Q Consensus 248 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (491)
.++... ....|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|+..++....
T Consensus 310 -~~~~~~----~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 310 -KASESF----LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp -HHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred -HHHHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 111111 3567889999999999999999999999987643 6788999999999999999999999999887543
Q ss_pred CCHhhHHHHHHHHHcCCCHhHHHH-HHHHHHH
Q 011201 328 PKDFDYFGLVEKLCGEGNAGIALE-VVDELWK 358 (491)
Q Consensus 328 ~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~ 358 (491)
+...+..+..++.+.++.+++.+ ++..|..
T Consensus 384 -~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 384 -NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55678888888999998887764 5555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0001 Score=68.89 Aligned_cols=92 Identities=7% Similarity=-0.121 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011201 259 NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVE 338 (491)
Q Consensus 259 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 338 (491)
+...|..+..+|.+.|++++|++.+++..+.... +...+..+..+|...|++++|.+.|+...+.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 5678899999999999999999999999986533 6788889999999999999999999999887543 5667777888
Q ss_pred HHHcCCCHhHHHHH
Q 011201 339 KLCGEGNAGIALEV 352 (491)
Q Consensus 339 ~~~~~g~~~~a~~~ 352 (491)
.+...++.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0002 Score=58.01 Aligned_cols=100 Identities=9% Similarity=0.101 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLID----------------GRPSVSIYNVLINGFVKCREFDKALGFYDRMV 217 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 217 (491)
...+......+.+.|++++|+..|.+...... .+.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45677788899999999999999998876510 01123455555666666666666666666655
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 218 RDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 218 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
+.... +...|..+..+|...|++++|.+.|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54311 4455555555666666666666666655554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00065 Score=67.16 Aligned_cols=174 Identities=6% Similarity=-0.036 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCCCCHHH
Q 011201 123 YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR----------MNDGLLAFEAMRKLIDGRPSVSI 192 (491)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~ 192 (491)
..-++|...++.+.... |....+|+.--.++.+.|+ ++++++.++.+.+.. +.+..+
T Consensus 43 ~~~eeal~~~~~~l~~n-----------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~a 109 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-----------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGT 109 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred CCCHHHHHHHHHHHHHC-----------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHH
Confidence 34467789999887754 5556788877777777777 999999999999864 568889
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 193 YNVLINGFVKCR--EFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK-KFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 193 ~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
|+.-..++.+.+ +++++++.++++.+.... |...|+.-...+.+.| .++++++.++++.+..+. |..+|+.....
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~l 187 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHH
Confidence 999999999999 779999999999987654 7888988888888888 899999999999988666 88889887777
Q ss_pred HHcC--------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 011201 270 FFGE--------------RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVL 312 (491)
Q Consensus 270 ~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 312 (491)
+.+. +.++++++.+++....... |...|..+-..+.+.++.+
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 6653 5578999999999887644 7778887777777766643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.9e-05 Score=57.30 Aligned_cols=88 Identities=3% Similarity=-0.039 Sum_probs=59.9
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV 201 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 201 (491)
.|++++|...+++.+..+. ..|....++..+..+|.+.|++++|+..|++..+.. +.+..++..+..++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~--------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL--------QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLY 72 (117)
T ss_dssp ----CCCHHHHHHHHSSCC--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC--------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence 4677777777777776431 125556677777778888888888888888777753 345677777777777
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 011201 202 KCREFDKALGFYDRMVRD 219 (491)
Q Consensus 202 ~~~~~~~A~~~~~~m~~~ 219 (491)
+.|++++|.+.|++....
T Consensus 73 ~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888877776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.6e-05 Score=71.04 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
...+..+...+.+.|++++|+..|++..+.. |+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 4556677788888899999999999887752 43321 122233333332221 136677777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDG-LCNEGRVL 312 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~ 312 (491)
+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|+..|++..+.... +...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887776432 6677888888888888888888888887654322 33444444443 23345667
Q ss_pred HHHHHHHHHHhCC
Q 011201 313 KACELVIDFSRRG 325 (491)
Q Consensus 313 ~a~~~~~~~~~~~ 325 (491)
++..+|..+....
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 7777777776543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00011 Score=59.58 Aligned_cols=62 Identities=8% Similarity=0.069 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 401 VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 401 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
..|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|.+.|++.++
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345555556666666666666666665542 23455566666666666666666666666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00028 Score=56.04 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC-----CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP-----SV-----SIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
..+......+.+.|++++|+..|++..+.....| +. ..|+.+..++.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455667777888888888888888877642211 11 1455555555555555555555554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.4e-05 Score=58.66 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 367 ACTTLIEGLRRLRKGVEASGLMEKM 391 (491)
Q Consensus 367 ~~~~li~~~~~~g~~~~a~~~~~~m 391 (491)
.+..+..++...|++++|+..+++.
T Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 63 LRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333334444444444444333
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00013 Score=70.54 Aligned_cols=133 Identities=9% Similarity=-0.056 Sum_probs=91.2
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCCC-HH
Q 011201 118 SLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL-----IDGRPS-VS 191 (491)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~ 191 (491)
.+...|++++|..++++.+......-. -..|....+++.+...|...|++++|+.++++.... +...|+ ..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg---~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFA---DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBC---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 455779999999999888654221100 123567788999999999999999999998886543 222343 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCC-CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVR-----DRVK-PD-VVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~-p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
+++.|...|...|++++|..++++..+ .|.. |+ ..+.+.+-.++.+.+.+++|+.+|.++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999988887654 1221 11 22344555566666667777777766654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00064 Score=53.28 Aligned_cols=13 Identities=0% Similarity=0.123 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHHH
Q 011201 170 MNDGLLAFEAMRK 182 (491)
Q Consensus 170 ~~~a~~~~~~~~~ 182 (491)
+++|++.|++..+
T Consensus 11 ~~~A~~~~~~aa~ 23 (138)
T 1klx_A 11 LKKAIQYYVKACE 23 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 3344444444333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00067 Score=53.15 Aligned_cols=110 Identities=11% Similarity=-0.058 Sum_probs=57.9
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD----VGRTVDAD 420 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 420 (491)
+.++|.+.|++..+.|.. +. . +...|...+..++|+++|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344555555555554411 11 1 3333444444555555555555543 44445555555554 55666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011201 421 RLRLLASTKGLDPDGMTYHILVSGYTR----ENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 421 ~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 465 (491)
+++++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665553 44555555555555 566666666666666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00025 Score=52.81 Aligned_cols=87 Identities=7% Similarity=-0.125 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHH
Q 011201 401 VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD-------LATY 473 (491)
Q Consensus 401 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~ 473 (491)
..+..+...+...|++++|...++...+.. +.+...|..+..+|.+.|++++|++.+++.++. .|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence 344445555555566666666655555542 224555555666666666666666666666532 333 3445
Q ss_pred HHHHHHHHhcCCccccc
Q 011201 474 NSYMDGLSNARKSVRQT 490 (491)
Q Consensus 474 ~~ll~~~~~~g~~~~A~ 490 (491)
..+..++...|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHhHhhhH
Confidence 55555555555555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00039 Score=55.22 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-----Ch-----hhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVK-P-----DV-----VTFNILISGFCRNKKFDLALGLFREMREK----- 254 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p-----~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----- 254 (491)
..+......+.+.|++++|++.|++..+.... | +. ..|+.+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556667777888888888888887764222 1 11 15566666666666666666666665553
Q ss_pred CCCC-CHHHH----HHHHHHHHcCCCHHHHHHHHHHHHH
Q 011201 255 GCNP-NVVSF----NTLIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 255 g~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
.+.| +...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0122 23445 5555555555666666655555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.72 E-value=9e-05 Score=68.35 Aligned_cols=150 Identities=9% Similarity=-0.036 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445677778888889999999999887654 233221 223334444433221 2378889999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHcCCCHhH
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEK-LCGEGNAGI 348 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~ 348 (491)
|.+.|++++|+..+++..+... -+...+..+..+|...|++++|...|+...+.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753 36788999999999999999999999998766433 33445555444 334567788
Q ss_pred HHHHHHHHHHcC
Q 011201 349 ALEVVDELWKKG 360 (491)
Q Consensus 349 a~~~~~~m~~~~ 360 (491)
+.+.|..|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 889999887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0002 Score=69.07 Aligned_cols=126 Identities=6% Similarity=-0.041 Sum_probs=74.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhC---CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCC-HHHHH
Q 011201 199 GFVKCREFDKALGFYDRMVRD---RVKP----DVVTFNILISGFCRNKKFDLALGLFREMREK-----GC-NPN-VVSFN 264 (491)
Q Consensus 199 ~~~~~~~~~~A~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~-~p~-~~~~~ 264 (491)
.+...|++++|+.++++..+. -+.+ ...+++.|...|...|++++|+.++++..+. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344567777777766665431 1111 1345666777777777777777777665432 22 122 34567
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc-----CCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011201 265 TLIRGFFGERKFDEGVNMAYEMIEL-----GCE-F-SSVTCEILVDGLCNEGRVLKACELVIDFSRR 324 (491)
Q Consensus 265 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 324 (491)
.|...|...|++++|+.++++..+. |.. | ...+.+.+-.++...+.+++|+.++..+.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777765432 322 1 1234455556666777777777777777653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0012 Score=46.92 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 153 MERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
....+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|.+.|++..+.... +...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 34566667777777788888888777777653 345666777777777777777777777776654321 344454444
Q ss_pred HHHH
Q 011201 233 SGFC 236 (491)
Q Consensus 233 ~~~~ 236 (491)
..+.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=54.75 Aligned_cols=92 Identities=9% Similarity=0.006 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------hh
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-------VV 226 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-------~~ 226 (491)
...+..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++..+.. |+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3567777888888888999988888888763 4467788888888888888888888888887653 33 33
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 011201 227 TFNILISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~ 249 (491)
.+..+..++...|+.+.|.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 44445555555555555544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00086 Score=50.42 Aligned_cols=79 Identities=14% Similarity=-0.015 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011201 172 DGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREM 251 (491)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 251 (491)
+|+..|++..+.. +.+...+..+...|...|++++|.+.|++..+.... +...|..+..+|.+.|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555432 334556666666666666666666666665554321 3445555556666666666666666655
Q ss_pred HH
Q 011201 252 RE 253 (491)
Q Consensus 252 ~~ 253 (491)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0014 Score=46.51 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRG 269 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 269 (491)
...+..+...+...|++++|.+.|++..+... .+...+..+...+.+.|++++|.+.|++..+.... +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 34555566666666666666666666554321 14445555556666666666666666665554222 33444444433
Q ss_pred H
Q 011201 270 F 270 (491)
Q Consensus 270 ~ 270 (491)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0014 Score=49.21 Aligned_cols=80 Identities=8% Similarity=0.004 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 011201 127 ELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREF 206 (491)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 206 (491)
.+...++...... |.....+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++
T Consensus 3 ~a~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 3 AITERLEAMLAQG-----------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CHHHHHHHHHTTT-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhC-----------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCH
Confidence 4667777776643 4456788999999999999999999999999874 45688899999999999999
Q ss_pred HHHHHHHHHHhhC
Q 011201 207 DKALGFYDRMVRD 219 (491)
Q Consensus 207 ~~A~~~~~~m~~~ 219 (491)
++|...|++..+.
T Consensus 70 ~~A~~~~~~al~~ 82 (115)
T 2kat_A 70 AGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0014 Score=47.95 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=46.8
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
|....++..+..+|.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445667777777777888888888887777753 33556777777777777888777777776654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00061 Score=54.01 Aligned_cols=69 Identities=16% Similarity=-0.009 Sum_probs=35.4
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGV----------EASGLMEKMLKEGILP-DSVTFNCLLEDL 410 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~----------~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 410 (491)
+.+.+++|.+.++...+.... +...|+.+..++...++++ +|+..|++.++. .| +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 334556666666666655433 5555655555555555432 555555555542 22 234444455554
Q ss_pred Hhc
Q 011201 411 CDV 413 (491)
Q Consensus 411 ~~~ 413 (491)
...
T Consensus 91 ~~l 93 (158)
T 1zu2_A 91 TSF 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00093 Score=52.96 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=66.1
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREF----------DKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
..+.+.+++|++.++...+.. +.+...|+.+..++...+++ ++|+..|++.++.... +...|..+..
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 345667889999999988864 45788888888888887765 4777777776665332 4556777777
Q ss_pred HHHhcC-----------ChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 234 GFCRNK-----------KFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 234 ~~~~~~-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
+|...| ++++|++.|++..+. .|+...|...
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 776653 566666666666654 3444444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0012 Score=48.33 Aligned_cols=82 Identities=9% Similarity=0.067 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+...+..+...+...|++++|...|++..+.. |....++..+..+|.+.|++++|++.|++..+.....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-----------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 56678889999999999999999999998754 3445789999999999999999999999987653222
Q ss_pred CCHHHHHHHHHHH
Q 011201 188 PSVSIYNVLINGF 200 (491)
Q Consensus 188 ~~~~~~~~li~~~ 200 (491)
++......+...+
T Consensus 75 ~~~~~~~~l~~~l 87 (100)
T 3ma5_A 75 GTQKDLSELQDAK 87 (100)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHH
Confidence 3444444333333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.044 Score=41.31 Aligned_cols=138 Identities=15% Similarity=0.038 Sum_probs=71.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHH
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALE 351 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 351 (491)
-.|..++..++..+..... +..-||.+|.-....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3456666666666655442 3444555554444444444444444444322 111 12334433333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 352 VVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL 431 (491)
Q Consensus 352 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 431 (491)
.+-.+-. +....+..+..+...|+-++..+++..+.. +.+|+......+..+|.+.|+..+|.+++.++-+.|+
T Consensus 83 C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3332211 334455555666666666666666666433 2455666666666666666666666666666666664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.021 Score=59.26 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR 237 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 237 (491)
..++..+.+.|..++|+++.+.-. .-.......|++++|+++.+.+ .+...|..+...+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHH
Confidence 566777778888888876543211 1133456678888888886544 267788888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011201 238 NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACEL 317 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 317 (491)
.++++.|.+.|.++.+ |..+...+...|+.+...++-+.....|. ++....+|.+.|++++|+++
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHH
Confidence 8888888888887654 34455555556666665555544444331 23334445555666666555
Q ss_pred HH
Q 011201 318 VI 319 (491)
Q Consensus 318 ~~ 319 (491)
+.
T Consensus 759 ~~ 760 (814)
T 3mkq_A 759 LI 760 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.012 Score=55.73 Aligned_cols=102 Identities=8% Similarity=0.003 Sum_probs=77.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCC
Q 011201 114 FIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL-----IDGRP 188 (491)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~ 188 (491)
..+..+.+.|++++|..++++........-. -..|....+++.+...|...|++++|+.++++.... +...|
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg---~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLP---DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCC---TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCC---ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3456677789999999999998865322111 123567788999999999999999999999987643 22234
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 189 S-VSIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 189 ~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
+ ..+++.|...|...|++++|..++++..+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3 45688999999999999999999887654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0045 Score=58.69 Aligned_cols=94 Identities=11% Similarity=-0.060 Sum_probs=67.2
Q ss_pred cCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCCC-HHHHHH
Q 011201 122 SYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL-----IDGRPS-VSIYNV 195 (491)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~ 195 (491)
.|++++|..++++.+......-. -..|....+++.+..+|...|++++|+.++++.... +...|+ ..+++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg---~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFE---DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBC---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccC---hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 46789999999887653211000 123566788889999999999999999888887543 222344 355888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 011201 196 LINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
|...|...|++++|..+|++..+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 88889999999998888887654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.04 Score=57.16 Aligned_cols=154 Identities=9% Similarity=0.018 Sum_probs=96.3
Q ss_pred HHHHHHcCChhHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 011201 161 VNAFVKANRMNDGLL-AFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNK 239 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 239 (491)
.......+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~ 666 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVG 666 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHT
T ss_pred HhHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcC
Confidence 344456788888866 44222 212233677788888899998887663211 1133456788
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVI 319 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 319 (491)
++++|+++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++.+
T Consensus 667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 667 QLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 999998886543 2678899999999999999999999888642 3445555556777666555554
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 320 DFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
.....|. ++.-..+|.+.|++++|.+++.
T Consensus 732 ~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 732 DAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 4444331 2333344445555555555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.018 Score=52.53 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHH
Q 011201 107 HDHTTFLFIVRSLASS-----YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFV 165 (491)
Q Consensus 107 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (491)
.+..+|...+++.... ..+.+|..+|++.++.. |....++..+.-+|.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-----------P~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-----------PEFTYARAEKALVDI 244 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHH
Confidence 3455666666554432 23578999999988754 554566665555554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.031 Score=50.97 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYN 474 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 474 (491)
..+..+|..+...+...|++++|...++++.... |+...|..+...+.-.|++++|.+.|++... +.|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 3456666666665566677777777777777764 6666666667777777777777777777764 356666654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0066 Score=43.85 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=44.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRPSVS-IYNVLINGFVKCREFDKALGFYDRMVRDR 220 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 220 (491)
....+.+.|++++|+..|++..+.. +.+.. .|..+..+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3556777888888888888887753 34566 77788888888888888888888877653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.012 Score=55.78 Aligned_cols=87 Identities=8% Similarity=-0.046 Sum_probs=63.7
Q ss_pred hcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHH
Q 011201 377 RLRKGVEASGLMEKMLKE---GILPD----SVTFNCLLEDLCDVGRTVDADRLRLLAST-----KGL-DPD-GMTYHILV 442 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~-~p~-~~~~~~li 442 (491)
..|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|..++++..+ .|- .|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888876653 12232 45788888888889999999888877653 221 222 45688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011201 443 SGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~ 463 (491)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.023 Score=53.87 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=70.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHH
Q 011201 372 IEGLRRLRKGVEASGLMEKMLKE---GILPD----SVTFNCLLEDLCDVGRTVDADRLRLLASTK-----G-LDPD-GMT 437 (491)
Q Consensus 372 i~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g-~~p~-~~~ 437 (491)
+..+.+.|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|..+++++.+. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999999988764 12233 457888888999999999999988876532 2 1222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 438 YHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 438 ~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.17 Score=38.25 Aligned_cols=139 Identities=10% Similarity=0.077 Sum_probs=94.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 307 NEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
-.|.+++..+++.+..... +..-||.+|--....-+-+...++++.+-+. .|. ...|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 4577888888887776653 4444666665555555555555555554332 122 12334443333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011201 387 LMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGF 466 (491)
Q Consensus 387 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 466 (491)
-+-.+ .-+...+...+..+...|+.|+-.+++..+... .+|+....-.+..+|.+.|+..+|.+++.+..++|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33222 225556677788889999999999999886553 467889999999999999999999999999999997
Q ss_pred C
Q 011201 467 I 467 (491)
Q Consensus 467 ~ 467 (491)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.011 Score=42.54 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=23.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVV-SFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
+.+.|++++|++.|++..+.... +.. .|..+..+|...|++++|++.|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33444444444444444443211 233 4444444444444444444444444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.3 Score=39.18 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDR 215 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~ 215 (491)
...|..|.+.....|+++-|.+.|..
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444444444444444444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.26 Score=39.52 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=22.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM 286 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 286 (491)
.+.|+++.|.++.+++. +...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555555544431 4445555555555555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.086 Score=37.55 Aligned_cols=68 Identities=9% Similarity=0.097 Sum_probs=53.1
Q ss_pred CchHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 011201 151 PEMERIFHFAVNAFVKANR---MNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDR 220 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 220 (491)
|.+...+..+..++...++ .++|..+|++..+.. +.++.+...+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456677777777765444 688999999988863 4577888888888999999999999999988764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.091 Score=41.07 Aligned_cols=84 Identities=19% Similarity=0.113 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC---CHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHH
Q 011201 312 LKACELVIDFSRRGVLPKDFDYFGLVEKLCGEG---NAGIALEVVDELWKKGNLP--SVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
..+.+-|.+..+.+. ++..+...+..++++++ ++++++.+|++..+.+ .| ....+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 444555555555444 45566666666677766 5557777777776654 12 23444455556677777777777
Q ss_pred HHHHHHHCCCCCC
Q 011201 387 LMEKMLKEGILPD 399 (491)
Q Consensus 387 ~~~~m~~~~~~p~ 399 (491)
+++.+.+ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777777 3554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.17 Score=36.03 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 011201 107 HDHTTFLFIVRSLASSYR---FSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKL 183 (491)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (491)
.+...+..+..++...++ .++|..++++.+... |....+...+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-----------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-----------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-----------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455667777777765544 799999999998754 566788999999999999999999999999986
Q ss_pred c
Q 011201 184 I 184 (491)
Q Consensus 184 ~ 184 (491)
.
T Consensus 73 ~ 73 (93)
T 3bee_A 73 N 73 (93)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.08 Score=41.39 Aligned_cols=64 Identities=16% Similarity=-0.045 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011201 398 PDSVTFNCLLEDLCDVG---RTVDADRLRLLASTKGLDP--DGMTYHILVSGYTRENRRKEGENLVNEML 462 (491)
Q Consensus 398 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 462 (491)
++..+...+..++++.+ +++++..+++...+.. .| +...+-.|.-+|.+.|++++|.+.++.++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444445555544 3445555555554432 12 12233334444555555555555555555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.38 E-value=3 Score=43.09 Aligned_cols=207 Identities=13% Similarity=0.032 Sum_probs=90.2
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHcCCC
Q 011201 270 FFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL--CNEGRVLKACELVIDFSRRGVLPKDF--DYFGLVEKLCGEGN 345 (491)
Q Consensus 270 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~ 345 (491)
++..|+-+....++..+.+.. +..+...+.-++ ...|+.+.+..+++.+.... .|... ...++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 344555555555555554421 223333333333 34566666666666555431 11111 11233445566666
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRT-VDADRLRL 424 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~ 424 (491)
.....+++..+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++..++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 666666666665532 1123322223333444555555555555444432 23333222333333333332 45555666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh--cC-------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 011201 425 LASTKGLDPDGMTYHILVSGYTR--EN-------RRKEGENLVNEMLDE-GFIPDLATYNSYMDGLSNARK 485 (491)
Q Consensus 425 ~~~~~g~~p~~~~~~~li~~~~~--~g-------~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~ 485 (491)
.+... +|..+-..-+.++.. .| ++...++.+...... .-.++...-..+..+....|+
T Consensus 654 ~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 654 PLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 55532 333333222223322 22 333444433333332 223344555556666666664
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.18 Score=36.64 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDR------VKPDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
..+..|...+.+.|+++.|..+|+...+.- -......+..|..++.+.|+++.|+..+++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444445555555555544433310 011233344444444444444444444444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.17 Score=36.77 Aligned_cols=66 Identities=14% Similarity=-0.002 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 011201 364 SVIACTTLIEGLRRLRKGVEASGLMEKMLKEG------ILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK 429 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 429 (491)
+...+..|...+.+.|+++.|..+|++..+.- -......+..+..++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444555566666666666666666554420 0123344555555555555555555555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.2 Score=43.82 Aligned_cols=83 Identities=11% Similarity=-0.036 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-CCh
Q 011201 346 AGIALEVVDELWKKGNL-PSVIACTTLIEGLRRL-----RKGVEASGLMEKMLKEGILP--DSVTFNCLLEDLCDV-GRT 416 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~-g~~ 416 (491)
...|...+++..+.... .+-..|..+...|.+. |+.++|.+.|++.++. .| +..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence 44555555555554322 1234555566556553 6666666666666663 33 244555555555553 666
Q ss_pred HHHHHHHHHHHHCC
Q 011201 417 VDADRLRLLASTKG 430 (491)
Q Consensus 417 ~~a~~~~~~~~~~g 430 (491)
+++.+.+++.....
T Consensus 257 ~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 257 AGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 66666666666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.16 Score=44.46 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CC
Q 011201 170 MNDGLLAFEAMRKLIDGRPS---VSIYNVLINGFVK-----CREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN-KK 240 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~ 240 (491)
..+|...+++..+.. |+ -..|..|...|.+ .|+.++|.+.|++..+.+..-+..++......+++. |+
T Consensus 179 l~~A~a~lerAleLD---P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLW---PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhC---CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 466777788877763 55 5678899999988 489999999999988764332477777788888884 88
Q ss_pred hhHHHHHHHHHHHcCCC--CCHHHHHHH
Q 011201 241 FDLALGLFREMREKGCN--PNVVSFNTL 266 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~--p~~~~~~~l 266 (491)
.+++.+.+++....... |+....+.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999998887665 665555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.72 E-value=2.3 Score=43.90 Aligned_cols=239 Identities=10% Similarity=-0.001 Sum_probs=116.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCCh--hhHHH
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGC-------NPNVVSFNTLIRGFFGERK-FDEGVNMAYEMIELGCEFSS--VTCEI 300 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~-------~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~--~~~~~ 300 (491)
+.-+....|..+++..++.......- .+....-.++.-+++-.|. -+++.+.+..+....-. .. ..--.
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalA 495 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALG 495 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHH
Confidence 33445555655566666665544311 0111112223333333332 23455555555543210 00 11112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH--HHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHH---HHHHHH
Q 011201 301 LVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLV--EKLCGEGNAGIALEVVDELWKKGNLPSVIACT---TLIEGL 375 (491)
Q Consensus 301 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~li~~~ 375 (491)
+...++-.|+.+....++..+.+.. +..+...+. -++...|+.+.+..+++.+.... . ...-|. ++..+|
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-d-p~vRygaa~alglAy 570 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-E-SLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-C-HHHHHHHHHHHHHHT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHHh
Confidence 2233445567676677776665432 222233333 33446778888887777776532 1 223333 233456
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHH
Q 011201 376 RRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRR-KEG 454 (491)
Q Consensus 376 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~-~~A 454 (491)
+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+|
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 67777766666887777642 2222222223334445666666667766555543 44444444444455545443 577
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011201 455 ENLVNEMLDEGFIPDLATYNSYMDGL 480 (491)
Q Consensus 455 ~~~~~~m~~~~~~p~~~~~~~ll~~~ 480 (491)
..++..+.. .+|..+-..-+.++
T Consensus 649 id~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 649 IDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHcc---CCCHHHHHHHHHHH
Confidence 778887763 23444443333333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.38 E-value=1.8 Score=41.02 Aligned_cols=256 Identities=12% Similarity=0.028 Sum_probs=144.6
Q ss_pred CChhHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhH--HHHHHHHHhcCC
Q 011201 168 NRMNDGLLAFEAMRKL----IDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRD-RVKPDVVTF--NILISGFCRNKK 240 (491)
Q Consensus 168 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~--~~li~~~~~~~~ 240 (491)
|++++|++.+-.+.+. .+..-.......++..|.+.|+++...+.+..+... |......+. +.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888777666653 222345677888999999999999998888776543 433222221 222232323333
Q ss_pred hhHH--HHHHHHHHH--cC-CCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHh
Q 011201 241 FDLA--LGLFREMRE--KG-CNP---NVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-S----SVTCEILVDGLCN 307 (491)
Q Consensus 241 ~~~A--~~~~~~m~~--~g-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~ 307 (491)
.+.. ..+.+.... .| +-. .......|...|...|++.+|.+++..+...-... + ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3221 112211110 01 111 12234567888999999999999999986432111 1 2456667788999
Q ss_pred cCCHHHHHHHHHHHHh----CCCCCC--HhhHHHHHHHHHcCCCHhHHHHHHHHHHHc-CCCCCHHHHHH----HHHHHH
Q 011201 308 EGRVLKACELVIDFSR----RGVLPK--DFDYFGLVEKLCGEGNAGIALEVVDELWKK-GNLPSVIACTT----LIEGLR 376 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~----li~~~~ 376 (491)
.+++.+|..++..+.. ....|+ ...+...+..+...+++.+|.+.|.++.+. ...-+...+.. ++.+..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999888643 222222 234566777788889999988888777542 11113322222 222222
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChHHHHHHH
Q 011201 377 RLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDV--GRTVDADRLR 423 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~ 423 (491)
-.+....-..+.........-++...|..++.+|... .+++.....|
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~ 318 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTY 318 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHT
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHH
Confidence 2222222233333333322234667788888887653 3344444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.22 E-value=1.5 Score=33.99 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHhcCChHHHHHHHHHHHHCC
Q 011201 364 SVIACTTLIEGLRRLRKG------VEASGLMEKMLKEGILPDSV----TFNCLLE---DLCDVGRTVDADRLRLLASTKG 430 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~----~~~~ll~---~~~~~g~~~~a~~~~~~~~~~g 430 (491)
|..+|-..+....+.|+. ++..++|++.... +.|+.. .|.-|-- .+...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555665 5666666666553 444310 0110000 1223477888888888776542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 431 LDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMD 478 (491)
Q Consensus 431 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 478 (491)
-+ =...|.....--.+.|+++.|.+++.+.+..+-+| ...+...+.
T Consensus 91 Kk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 91 KK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp TT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 22 25556666666677888888888888888655443 333444333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.18 E-value=3.9 Score=38.70 Aligned_cols=264 Identities=8% Similarity=0.041 Sum_probs=148.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHH--HHHHHHHH
Q 011201 123 YRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSI--YNVLINGF 200 (491)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~ 200 (491)
++++.|.+.+..+.+.... . ........+...++..|.+.|+++...+.+..+.+..|..+...+ -+.++...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~-~----~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQ-A----SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSS-S----CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhh-c----cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5667776666544432111 0 011233577888999999999999998888877765443222221 22233333
Q ss_pred HhcCCHHH--HHHHHHHHhh---CCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHH
Q 011201 201 VKCREFDK--ALGFYDRMVR---DRVKP---DVVTFNILISGFCRNKKFDLALGLFREMREK--GCNPN---VVSFNTLI 267 (491)
Q Consensus 201 ~~~~~~~~--A~~~~~~m~~---~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~li 267 (491)
......+. -..+.+.+.. ..+.. .......|...|...|++.+|.+++.++... |.... ...+...+
T Consensus 105 ~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 105 KSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33333332 2222222211 11111 1123356788899999999999999998654 22211 34677788
Q ss_pred HHHHcCCCHHHHHHHHHHHHH----cCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhH-----HH
Q 011201 268 RGFFGERKFDEGVNMAYEMIE----LGCEFS--SVTCEILVDGLCNEGRVLKACELVIDFSRR-GVLPKDFDY-----FG 335 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~----~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~-----~~ 335 (491)
+.|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+. ....+...+ ..
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 899999999999999998743 222222 245567777888899999998888777543 111122111 12
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHH
Q 011201 336 LVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRL--RKGVEASGLMEKML 392 (491)
Q Consensus 336 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~ 392 (491)
++.... .+....-..++.........++...|..++.+|... .+++.+.+.|....
T Consensus 265 v~~~iL-a~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 265 VYFLVL-SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHH-SSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHh-CCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 222222 221122222333333322234677888888888754 35666666665433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.38 Score=36.14 Aligned_cols=82 Identities=18% Similarity=0.090 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHH
Q 011201 311 VLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI---ALEVVDELWKKGNL-PSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
...+.+-+......|. ++..+-..+..++.++.+... ++.+++++...+.. -.....-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444444333 344445555555555554443 55666665554310 122233344455666666666666
Q ss_pred HHHHHHH
Q 011201 387 LMEKMLK 393 (491)
Q Consensus 387 ~~~~m~~ 393 (491)
.++.+++
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666666
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.50 E-value=1.7 Score=46.93 Aligned_cols=147 Identities=12% Similarity=0.018 Sum_probs=88.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH--------------------HHc
Q 011201 230 ILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEM--------------------IEL 289 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m--------------------~~~ 289 (491)
.++..+.+.+..+-+.++..-.. -+...--.+..+|...|++++|.+.|++. ...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 45555666666666655443222 14444445556666777777777777542 111
Q ss_pred C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC
Q 011201 290 G--CEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK----DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP 363 (491)
Q Consensus 290 ~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 363 (491)
. ...-..-|..++..+-+.|.++.+.++-...++....-+ ...|..+.+.+...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 1 111234467777888888888888877776655432212 125677888888888888888888777765443
Q ss_pred CHHHHHHHHHHHHhcCChHH
Q 011201 364 SVIACTTLIEGLRRLRKGVE 383 (491)
Q Consensus 364 ~~~~~~~li~~~~~~g~~~~ 383 (491)
......|+..+|..|..+.
T Consensus 971 -~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHhCCChhh
Confidence 4556667776666665443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.43 E-value=1.3 Score=34.24 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=22.1
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 011201 344 GNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEG 395 (491)
Q Consensus 344 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 395 (491)
+|+++|.++|+.+.+.+-.. ...|-....--.++|+...|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 34444444444443322222 3334333444444555555555555544443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.43 E-value=1.2 Score=45.09 Aligned_cols=52 Identities=12% Similarity=-0.054 Sum_probs=40.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 409 DLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
-|...|+++.|.++-++....- +-+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3556788888888888877752 445788888888888888888888888877
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.00023 Score=66.21 Aligned_cols=264 Identities=10% Similarity=0.044 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
+.+|..+..+..+.+++.+|++-|- + ..|...|..+|....+.|.+++-.+.+...++..- +...=+.|+.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---k----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---K----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---C----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---h----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3678888999999898888866542 1 24677788899999999999998888876554422 4444567889
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
+|++.+++.+-.+++. .||..-...+..-|...|.++.|.-+|..+.. |.-|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 9999988776554432 35666677788888888888888766655422 2233334445555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 314 ACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
|.+.-+ -.-+..||..+-.+|...+++.-|.-.--.+.-. ......++..|...|.+++.+.+++.-..
T Consensus 189 AVdaAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 532211 1235566777777777777776665443333321 11223455667777777777777776553
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 011201 394 EGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTK-GLD------PDGMTYHILVSGYTRENRRKEGE 455 (491)
Q Consensus 394 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~------p~~~~~~~li~~~~~~g~~~~A~ 455 (491)
. -+.....|+-|.-.|++- +.++..+-++..-.+ +++ -....|.-++-.|++-..++.|.
T Consensus 258 l-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 L-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp S-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred C-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 2 234566677666666654 333333332221111 111 02345666777777666666554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.37 E-value=2 Score=43.42 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011201 434 DGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATYNSYMDGLSNAR 484 (491)
Q Consensus 434 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 484 (491)
+..-|..|.....|.++++||.+.|+..+.. .-+...+..|++.|.+.+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 3445888888899999999999999999954 568999999999998876
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.11 E-value=4.7 Score=43.45 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011201 228 FNILISGFCRNKKFDLALGLFREMREKGCNPN----VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVD 303 (491)
Q Consensus 228 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 303 (491)
|..++..+-+.+.++.+.++-....+..-.-+ ...|..+.+++...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 34444555555555555554444333211111 113455555555555555555555544433222 233344444
Q ss_pred HHHhcC
Q 011201 304 GLCNEG 309 (491)
Q Consensus 304 ~~~~~g 309 (491)
.+|..|
T Consensus 980 ~lce~~ 985 (1139)
T 4fhn_B 980 QLTKQG 985 (1139)
T ss_dssp HHHHHC
T ss_pred HHHhCC
Confidence 444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.62 E-value=1.1 Score=33.66 Aligned_cols=85 Identities=15% Similarity=0.002 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 011201 382 VEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVD---ADRLRLLASTKGLDP--DGMTYHILVSGYTRENRRKEGEN 456 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~ 456 (491)
..+.+-|.+....|. ++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444333 555555556666666665544 666666665543 12 22233334556777777777777
Q ss_pred HHHHHHHCCCCCCH
Q 011201 457 LVNEMLDEGFIPDL 470 (491)
Q Consensus 457 ~~~~m~~~~~~p~~ 470 (491)
.++.+++. .|+.
T Consensus 96 ~~~~lL~~--eP~n 107 (126)
T 1nzn_A 96 YVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHH--CTTC
T ss_pred HHHHHHHh--CCCC
Confidence 77777743 4543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=1 Score=41.83 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=74.6
Q ss_pred HHHHHHHHHH---HHcCChhHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCChhhH
Q 011201 155 RIFHFAVNAF---VKANRMNDGLLAFEAMRKLIDGRP--SVSIYNVLINGFVKCREFD-KALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 155 ~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~ 228 (491)
..|..++..- ...|+.+.|.+.+++........+ +.. ...|- ....-++++.. ...
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~~-------~a~ 174 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDKV-------LAH 174 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHHH-------HHH
Confidence 3444444332 345788888888888876532221 111 01111 11122222211 123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIE-----LGCEFSSVTCEI 300 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ 300 (491)
..++..+...|++++|...+..+.....- +...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 44666777788888888777777665332 667788888888888888888888777643 478777665443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=1.1 Score=41.51 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE-----KGCNPNVVSFNT 265 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 265 (491)
...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+++.+ .|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3456666777777777777777766543 23666777777778888888887777777643 377777665433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.41 E-value=4.4 Score=28.80 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 382 VEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILV 442 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 442 (491)
-++.+-++.+....+.|+.....+.+++|.+.+++..|.++++.++.+. .....+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 3555555666666667777777777777777777777777776665542 22344555554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.75 E-value=13 Score=33.31 Aligned_cols=167 Identities=10% Similarity=0.033 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGL----FREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~li~ 268 (491)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ ++-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4556667888899999998875532 224455665544443 355556678888887777777
Q ss_pred HHHcCCCHH-HHHHHHHHHH----HcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011201 269 GFFGERKFD-EGVNMAYEMI----ELG--CEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLC 341 (491)
Q Consensus 269 ~~~~~g~~~-~a~~~~~~m~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 341 (491)
.+.....-+ .-..+.++++ +.| ..-|......+...|.+.+++.+|+..|- .|-.++...|..++..+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 776554321 1233344333 222 33466777788889999999999887772 232222244544444333
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
+.+...+ .+...-.+++ -|.-.++...|..+++...+
T Consensus 179 ~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 3332111 1222222233 34556788888777665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.25 E-value=5.8 Score=29.91 Aligned_cols=70 Identities=10% Similarity=0.111 Sum_probs=39.2
Q ss_pred CCHhhHHHHHHHHHcCCC---HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 328 PKDFDYFGLVEKLCGEGN---AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 328 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
++..+-..+..++.++.+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 344444445555555543 335666666666554222344445555666777777777777777666 3444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=87.89 E-value=0.0033 Score=58.71 Aligned_cols=243 Identities=10% Similarity=0.044 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS 189 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (491)
.+|..+.++..+.+++.+|++.|- +.+. +..|..++.+..+.|.+++-+..+.-.++. ..+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI---kA~D-------------ps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke 115 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI---KADD-------------PSSYMEVVQAANTSGNWEELVKYLQMARKK---ARE 115 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC---CCSC-------------CCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCS
T ss_pred cHHHHHHHHHHccCchHHHHHHHH---hCCC-------------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcc
Confidence 456777777777777766654431 1111 123566777777888888887777766654 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---------------
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK--------------- 254 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------------- 254 (491)
...=+.|+-+|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+...
T Consensus 116 ~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 116 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp TTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred cccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3444677888888877655433321 355555566666666666666666666544211
Q ss_pred -----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011201 255 -----GCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK 329 (491)
Q Consensus 255 -----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 329 (491)
.-.-++.||-.+-.+|...+.+.-|.-.--.++-. ..-...++..|-+.|.+++.+.+++.-... -...
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAH 262 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAH 262 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-Cchh
Confidence 01225677888888888888777665443333322 112234566677778887777777766532 1235
Q ss_pred HhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhcCChHHHH
Q 011201 330 DFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP-------SVIACTTLIEGLRRLRKGVEAS 385 (491)
Q Consensus 330 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~ 385 (491)
..+|+-|.-.|++- +.++.++-++....+=..| ....|..++-.|++-.+++.|.
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 56677777777765 3444444443322211111 2345677777777767766554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.75 E-value=17 Score=33.53 Aligned_cols=297 Identities=10% Similarity=0.004 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCChhhH-
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP---SVSIYNVLINGFVKC-REFDKALGFYDRMVRDRVKPDVVTF- 228 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~- 228 (491)
+.+...+...|.+.|+.++..+++.......+.-+ .......|++.+... +..+.-.++..+..+..-. +-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 35677889999999999999999988765433323 344567888888765 4445455555544432111 22334
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCChh
Q 011201 229 -----NILISGFCRNKKFDLALGLFREMREKGCNPN-----VVSFNTLIRGFFGERKFDEGVNMAYEMIEL--GCEFSSV 296 (491)
Q Consensus 229 -----~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~ 296 (491)
.-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.++..
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2578889999999999999998877411112 344566677888999999999999887643 2323333
Q ss_pred hHHHH----HHHHH-hcCCHHHHHHHHHHHHhC-C-CC-C---CHhhHHHHHHHHHcCCCHhHHHHHHH-HHHHcCCCCC
Q 011201 297 TCEIL----VDGLC-NEGRVLKACELVIDFSRR-G-VL-P---KDFDYFGLVEKLCGEGNAGIALEVVD-ELWKKGNLPS 364 (491)
Q Consensus 297 ~~~~l----l~~~~-~~g~~~~a~~~~~~~~~~-~-~~-~---~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~ 364 (491)
+...+ .-.+. ..+++..|...|-+..+. . .. | +...|..+.... .++..+...++. .....-..|+
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCcc
Confidence 32221 22345 789999998887765422 1 10 1 112233222222 233333323222 1111113355
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011201 365 VIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSG 444 (491)
Q Consensus 365 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 444 (491)
...+..++.+| ..+++.+..+++..... .+..|......+-..+-+ -.+.+ +..+.+ +-...++..+...
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~--Ir~~~---L~~i~~---pYsrIsl~~iA~~ 325 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT--MLEQN---LCRIIE---PYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH--HHHHH---HHHHHT---TCSEEEHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH--HHHHH---HHHHhH---hhceeeHHHHHHH
Confidence 66666666665 45677766666665433 244455422111110000 00011 111111 1133455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 011201 445 YTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~~ 465 (491)
+.- ..+++...+-+|+..|
T Consensus 326 l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTT
T ss_pred HCc--CHHHHHHHHHHHHHCC
Confidence 433 6788888888888764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.22 E-value=5.9 Score=28.14 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=38.7
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLE 408 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 408 (491)
.-+..+-++.+......|++....+.+.+|.+.+++.-|.++|+-.+.+ +.....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3355556666666666777777777777777777777777777766554 2223334555544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.37 E-value=7.3 Score=29.36 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 382 VEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVS 443 (491)
Q Consensus 382 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 443 (491)
-+..+-++.+...++.|+.....+.+++|.+.+++..|.++++-++.+- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3555556666666777788888888888878888888888777766542 334555665553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.66 E-value=7.1 Score=30.78 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV-------SIYNVLINGFVKCREFDKALGFYDRMVR 218 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~ 218 (491)
+..-+..+...|.++.|+-+.+.+....+..+++ .++..+.+++...+++..|...|++..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4445777888899999988888766654334442 3566778899999999999999998643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.73 E-value=11 Score=28.44 Aligned_cols=74 Identities=5% Similarity=-0.128 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011201 396 ILPDSVTFNCLLEDLCDVGRT---VDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA 471 (491)
Q Consensus 396 ~~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 471 (491)
-.|+..+--.+..++.+..+. .+++.+++.+.+.+..-....+--|.-++.+.|++++|.+..+.+. .+.|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL--~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhCCCCH
Confidence 345555555555555555443 3455566666554311123334445556677777777777777776 3455543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.32 E-value=22 Score=31.56 Aligned_cols=111 Identities=12% Similarity=0.087 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH----HHHHHHHcCCCCCHHHHHHHHH
Q 011201 193 YNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALG----LFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 193 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~li~ 268 (491)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +.+-..+.+++++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45666678888889888888765322 2445566655444 3455556678888888777777
Q ss_pred HHHcCCCHH-HHHHHHHHHH----HcC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011201 269 GFFGERKFD-EGVNMAYEMI----ELG--CEFSSVTCEILVDGLCNEGRVLKACELV 318 (491)
Q Consensus 269 ~~~~~g~~~-~a~~~~~~m~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 318 (491)
.+..-..-+ .-.+++++++ +.| ..-|......+...|.+.|++.+|...|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 765533211 1233444443 222 2236677788888899999998888766
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.23 E-value=12 Score=28.59 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=40.9
Q ss_pred CCCHhhHHHHHHHHHcCCC---HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 011201 327 LPKDFDYFGLVEKLCGEGN---AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPD 399 (491)
Q Consensus 327 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 399 (491)
.++..+-..+..++.++.+ ..+++.+++++...+..-.-...-.|.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 3455555555555555544 345666666666644322333444555667777777777777777776 3454
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=83.92 E-value=3.3 Score=35.93 Aligned_cols=45 Identities=11% Similarity=-0.022 Sum_probs=22.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHH
Q 011201 377 RLRKGVEASGLMEKMLKEGILPDSV---TFNCLLEDLCDVGRTVDADRL 422 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~ 422 (491)
..++.....++++.+.+.|..++.. -.+. +...++.|+.+-+..+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRL 238 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH-HHHHHHTTCHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHH
Confidence 4455545556666666666554421 1122 2333556665544433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.90 E-value=5.8 Score=31.28 Aligned_cols=127 Identities=8% Similarity=0.091 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH-
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV- 190 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 190 (491)
+-.-++.+...+.++.|..+...+....... ..+++...-..++..+.+++...|++.+|...|++..+....-+..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~--~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN--PELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--TTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC--cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455777888889998888877755421100 0111111123567788999999999999999999975542221111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011201 191 SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE 253 (491)
Q Consensus 191 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 253 (491)
.++..+- ....... ......+...---+..||.+.+++++|+.+++.+..
T Consensus 101 s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 101 KVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred Ccccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111110 0000000 001122334444466778888888888888776543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.59 E-value=9.1 Score=28.85 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=46.1
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 345 NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLE 408 (491)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 408 (491)
|.-+..+-++.+....+.|++....+.+.+|.+.+++.-|.++|+-.+.+ +.+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34456666677777778888888888888888888888888888877765 3334455666654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.33 E-value=11 Score=35.37 Aligned_cols=97 Identities=11% Similarity=-0.063 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCChhhH--H
Q 011201 227 TFNILISGFCRNKKFDLALGLFREMREKG--CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIEL---GCEFSSVTC--E 299 (491)
Q Consensus 227 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~--~ 299 (491)
++..+...|.+.|++++|.+.|.++.... ..--...+-.+|+.+...+++..+...+.+.... +..++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45556666777777777777777766542 2223455666677777777777777777766432 222211110 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 011201 300 ILVDGLCNEGRVLKACELVIDFSR 323 (491)
Q Consensus 300 ~ll~~~~~~g~~~~a~~~~~~~~~ 323 (491)
.-...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111122345777777777766543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.96 E-value=27 Score=30.94 Aligned_cols=167 Identities=13% Similarity=0.041 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHhhCCCCCChhhHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALG----FYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~li 232 (491)
|..+..-|.+.+++++|++++..--. .+.+.|+...|-+ +++.+.+.+++++.....-++
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44566778889999999888654322 1233455444333 344555567777777777777
Q ss_pred HHHHhcCChh-HHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 233 SGFCRNKKFD-LALGLFREMREK----G--CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 233 ~~~~~~~~~~-~A~~~~~~m~~~----g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
..+.....-+ .=.++++++.+. | ..-+......+...|.+.|++.+|...|-. |-.-|...+..++--+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 6665533211 223444444322 1 123677888888999999999998876642 2111234444444333
Q ss_pred Hhc---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 306 CNE---GRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 306 ~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
... |...++ +.+ ....+-.|.-.|+...|..+|+...+
T Consensus 176 ~~~~~~~~~~e~--------------dlf-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEF-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHHH--------------HHH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333 443332 111 12223345567888888888887653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.40 E-value=8.7 Score=33.05 Aligned_cols=116 Identities=11% Similarity=0.134 Sum_probs=76.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcC
Q 011201 162 NAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK--PDVVTFNILISGFCRNK 239 (491)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~ 239 (491)
..+.+.|++++|++....-.+. .+-|...-..|+..+|-.|+++.|.+-++...+.... |-...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 3466889999999888877764 2668888999999999999999999999888765211 122344444443
Q ss_pred ChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHc
Q 011201 240 KFDLALGLFREMREKGCNP-----NVVSFNTLIRGFF--GERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 289 (491)
+..=.+....+-.| ...-...++.+.. ..|+.++|.++-.++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222222211 2333344555444 469999999999888765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.10 E-value=30 Score=30.93 Aligned_cols=167 Identities=9% Similarity=0.014 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHhhCCCCCChhhHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALG----FYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~li 232 (491)
|..+..-|.+.+++++|++++..--. .+.+.|+...|-+ +++-+.+.++++|.....-++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~----------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ----------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44556678899999999887654322 1233344433333 334444456666766666666
Q ss_pred HHHHhcCChh-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011201 233 SGFCRNKKFD-LALGLFREMRE----KG--CNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGL 305 (491)
Q Consensus 233 ~~~~~~~~~~-~A~~~~~~m~~----~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 305 (491)
..+.....-+ +=.++.+++.+ .| ..-|......+...|.+.+++.+|...|- .|-.+....|..++--+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 6665544321 11223333322 12 23366777788888999999988887763 23333335554444333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011201 306 CNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWK 358 (491)
Q Consensus 306 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 358 (491)
...+...+ .+.+ ....+-.|...+++..|..+++...+
T Consensus 178 ~~~~~~~e--------------~dlf-iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHT--------------APLY-CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGG--------------HHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHH-HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33222111 1222 22334445567888888887776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 491 | ||||
| d1jvra_ | 137 | a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell | 4e-04 |
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 491 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.34 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.56 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.43 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.28 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.28 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.21 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.08 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.05 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.99 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.9 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.86 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.82 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.79 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.75 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.69 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.53 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.44 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.44 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.41 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.36 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.09 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.96 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.86 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.84 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.69 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.64 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.51 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.99 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.5 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.49 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.36 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 80.9 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.5e-20 Score=176.46 Aligned_cols=349 Identities=13% Similarity=0.019 Sum_probs=284.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHH
Q 011201 115 IVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYN 194 (491)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (491)
+...+.+.|++++|...++++.+.. |....++..+..+|.+.|++++|+..|+++.+.. +.+..+|.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-----------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~ 71 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-----------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 4566778899999999999998753 4556889999999999999999999999998863 45688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH----------------------------------HHHHHHHhcCC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFN----------------------------------ILISGFCRNKK 240 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----------------------------------~li~~~~~~~~ 240 (491)
.+..+|.+.|++++|.+.+....+.... +...+. .........+.
T Consensus 72 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (388)
T d1w3ba_ 72 NLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR 150 (388)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC
T ss_pred HHHHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 9999999999999999999988775322 222221 12222334455
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011201 241 FDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVID 320 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 320 (491)
...+...+.+....... +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++.
T Consensus 151 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 228 (388)
T d1w3ba_ 151 LEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred hhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHH
Confidence 55566666655554322 5677888889999999999999999999876533 567888899999999999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 011201 321 FSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDS 400 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 400 (491)
....+.. +...+..+...+.+.|++++|.+.|++..+.... +...|..+...+...|++++|++.++..... ...+.
T Consensus 229 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~ 305 (388)
T d1w3ba_ 229 ALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHA 305 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCH
T ss_pred hHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccc
Confidence 8876544 5667788889999999999999999999887544 6788999999999999999999999998876 34577
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 011201 401 VTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD-LATYNSYMDG 479 (491)
Q Consensus 401 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~ 479 (491)
..+..+...+...|++++|...+++..+.. +-+..+|..+..+|.+.|++++|.+.|++.++ +.|+ ...|..+..+
T Consensus 306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 306 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 888889999999999999999999988753 33577888999999999999999999999985 4565 6689999999
Q ss_pred HHhcCC
Q 011201 480 LSNARK 485 (491)
Q Consensus 480 ~~~~g~ 485 (491)
|.+.||
T Consensus 383 ~~~~~D 388 (388)
T d1w3ba_ 383 LKEMQD 388 (388)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.5e-18 Score=158.18 Aligned_cols=337 Identities=14% Similarity=0.060 Sum_probs=271.0
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC
Q 011201 90 HYDFHIFAWASTIDSFRHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR 169 (491)
Q Consensus 90 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (491)
..|...|..+.... +-+..++..+...+.+.|++++|...++.+++.. |....++..+..+|.+.|+
T Consensus 16 ~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 16 EAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----------PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHhhhhcc
Confidence 45777787776542 2356788899999999999999999999987753 4556889999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHH----------------------------------HHHHHhcCCHHHHHHHHHH
Q 011201 170 MNDGLLAFEAMRKLIDGRPSVSIYNVL----------------------------------INGFVKCREFDKALGFYDR 215 (491)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~~~~~~~l----------------------------------i~~~~~~~~~~~A~~~~~~ 215 (491)
+++|+..+....+.. ..+...+... .......+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence 999999999988763 2222222222 2223333444555555555
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCh
Q 011201 216 MVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSS 295 (491)
Q Consensus 216 m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 295 (491)
..... .-+...+..+...+...|++++|...+++..+.... +...|..+...+...|++++|+..+++..+.+.. +.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence 44432 124567788888999999999999999998886443 6778999999999999999999999999887643 66
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 296 VTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGL 375 (491)
Q Consensus 296 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 375 (491)
..+..+...+.+.|++++|...+++..+.... +..++..+...+...|++++|.+.++....... .+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHH
Confidence 77888899999999999999999999887543 567788999999999999999999999888654 3778889999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 011201 376 RRLRKGVEASGLMEKMLKEGILP-DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP-DGMTYHILVSGYTRENR 450 (491)
Q Consensus 376 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~ 450 (491)
.+.|++++|++.|++.++. .| +..++..+..+|.+.|++++|...++++.+. .| +...|..+..+|.+.|+
T Consensus 316 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999874 44 4678888999999999999999999999875 44 57789999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.7e-13 Score=123.33 Aligned_cols=270 Identities=12% Similarity=-0.038 Sum_probs=173.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 011201 195 VLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER 274 (491)
Q Consensus 195 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 274 (491)
.....+.+.|++++|...|++..+.... +..+|..+..++...|++++|...|++..+.... +...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 3555677788888888888887776433 5667777778888888888888888887765433 5667777777888888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
++++|.+.++++....... ...+....... ... +.......+..+...+...+|.+.+.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGA-GGA-------------------GLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTT-GGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccch-HHHHHhhhhhh-hhc-------------------ccccchhhHHHHHHhhHHHHHHHHHH
Confidence 8888888887776643211 11000000000 000 00001111222333455667777777
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 355 ELWKKGN-LPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDP 433 (491)
Q Consensus 355 ~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p 433 (491)
+..+... ..+...+..+...+...|++++|+..|++...... -+...|..+...|...|++++|.+.++.+.+.. +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 7665432 23566777777888888888888888888776532 246677778888888888888888888877753 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHhcCCcccc
Q 011201 434 DGMTYHILVSGYTRENRRKEGENLVNEMLDE----------GFIPDLATYNSYMDGLSNARKSVRQ 489 (491)
Q Consensus 434 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~p~~~~~~~ll~~~~~~g~~~~A 489 (491)
+..+|..+..+|.+.|++++|++.|++.++. ........|..+-.++...|+.+.+
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5677888888888888888888888887652 1122334566667777777766543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.7e-13 Score=123.33 Aligned_cols=228 Identities=11% Similarity=-0.016 Sum_probs=139.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..+|...|++++|...|++..+.... +...|..+...|.+.
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccc
Confidence 45667889999999999999999863 456889999999999999999999999998876433 677888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCChhhHHHH
Q 011201 239 KKFDLALGLFREMREKGCNPNVVS----------------FNTLIRGFFGERKFDEGVNMAYEMIELGC-EFSSVTCEIL 301 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~g~~p~~~~----------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l 301 (491)
|++++|.+.+++...... +... ....+..+...+.+.++.+.+.+..+... ..+..++..+
T Consensus 101 ~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTP--AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp TCHHHHHHHHHHHHHTST--TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccchhhHHHhcc--chHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 999999999999876522 1110 01111122233344455555554443321 1233444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 011201 302 VDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKG 381 (491)
Q Consensus 302 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 381 (491)
...+...|++++|...++........ +...+..+...|...|++++|.+.|++..+.... +...|..+..+|.+.|++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCH
Confidence 45555555555555555554443322 3334444555555555555555555554443222 344444455555555555
Q ss_pred HHHHHHHHHHHH
Q 011201 382 VEASGLMEKMLK 393 (491)
Q Consensus 382 ~~a~~~~~~m~~ 393 (491)
++|++.|++.++
T Consensus 257 ~~A~~~~~~al~ 268 (323)
T d1fcha_ 257 REAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=5.9e-10 Score=100.06 Aligned_cols=219 Identities=5% Similarity=0.053 Sum_probs=168.3
Q ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhH
Q 011201 150 CPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR-EFDKALGFYDRMVRDRVKPDVVTF 228 (491)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~ 228 (491)
.|....+++.+...+.+.++.++|++.++++.+.. +-+..+|+....++...| ++++|++.++...+.... +..+|
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~ 115 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVW 115 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHH
Confidence 46667888888889999999999999999999974 457888999999988876 589999999998876544 77899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011201 229 NILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNE 308 (491)
Q Consensus 229 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 308 (491)
+.+...+.+.|++++|++.++++.+.... +...|..+...+.+.|++++|++.++++++.+.. +...|+.+...+.+.
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 193 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHc
Confidence 99999999999999999999999987554 7899999999999999999999999999988654 667777766666655
Q ss_pred CC------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 011201 309 GR------VLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLP-SVIACTTLIEGL 375 (491)
Q Consensus 309 g~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~ 375 (491)
+. +++|++.+...++.... +...|..+...+. ....+++.+.++...+....+ +...+..++..|
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred cccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 54 56777777777766543 5555555554443 344566777777666543322 344444555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.6e-09 Score=98.78 Aligned_cols=273 Identities=11% Similarity=-0.047 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----h
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS---VSIYNVLINGFVKCREFDKALGFYDRMVRDRV-KPD----V 225 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~ 225 (491)
.+........+...|++++|++.+++..+.....++ ..+++.+..+|...|++++|.+.|++..+... .++ .
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 344555567778888888888888888775321111 34677777888888888888888887654211 111 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC----CC
Q 011201 226 VTFNILISGFCRNKKFDLALGLFREMREK----GCNPN---VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE----FS 294 (491)
Q Consensus 226 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~ 294 (491)
..+..+...+...|++..+...+.+.... +.... ...+..+...+...|+++.+...+......... ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 34455566677778888887777765432 11111 123445556667777777777777766654221 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC--CHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC---CCH
Q 011201 295 SVTCEILVDGLCNEGRVLKACELVIDFSRRG----VLP--KDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNL---PSV 365 (491)
Q Consensus 295 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~ 365 (491)
...+......+...++...+...+....... ..+ ....+..+...+...|+.++|...++........ ...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 251 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence 2334444455566666666666665543221 100 0112333444445555555555555544332111 112
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKE----GILPD-SVTFNCLLEDLCDVGRTVDADRLRLLA 426 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 426 (491)
..+..+...+...|++++|...+++.... +..|+ ...+..+..+|...|++++|.+.+++.
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33334444555555555555555544321 22222 223344444455555555555554443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.3e-09 Score=96.15 Aligned_cols=215 Identities=12% Similarity=0.045 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhcCCCC
Q 011201 110 TTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANR-MNDGLLAFEAMRKLIDGRP 188 (491)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~ 188 (491)
.+|+.+...+.+.+.+++|+.++++++... |....+|+....++...|+ +++|+..+++..+.. +-
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-----------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~ 110 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-----------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PK 110 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-----------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--Hh
Confidence 467777788888999999999999998864 6667899999999988775 899999999998863 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011201 189 SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIR 268 (491)
Q Consensus 189 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 268 (491)
+..+|+.+...+.+.|++++|++.++++.+.... +...|..+...+.+.|++++|++.++++.+.... +...|+.+..
T Consensus 111 ~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~ 188 (315)
T d2h6fa1 111 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYF 188 (315)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHH
Confidence 7999999999999999999999999999886533 7889999999999999999999999999998655 7788888777
Q ss_pred HHHcCCC------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHH
Q 011201 269 GFFGERK------FDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLP-KDFDYFGLVEKLC 341 (491)
Q Consensus 269 ~~~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 341 (491)
.+.+.+. +++|++.+.+..+.... +...|..+...+.. ...+++.+.++...+..... +...+..++..|.
T Consensus 189 ~l~~~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 189 VISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHccccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 7666655 57899999988887643 66777766665544 44677778887776554332 3444555555554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1e-08 Score=93.23 Aligned_cols=275 Identities=9% Similarity=-0.036 Sum_probs=198.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC---
Q 011201 113 LFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS--- 189 (491)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 189 (491)
......+...|++++|..++++........+ .+....++..+..++...|++++|+..|++..+.....++
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGW------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC------cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 3446667888999999999999887542211 0112346778889999999999999999988764221222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CC
Q 011201 190 -VSIYNVLINGFVKCREFDKALGFYDRMVR----DRVKPD---VVTFNILISGFCRNKKFDLALGLFREMREKG----CN 257 (491)
Q Consensus 190 -~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~~ 257 (491)
...+..+...+...|++..+...+..... .+.... ...+..+...+...|+++.+...+.+..... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 34567777888999999999999887654 111111 2345567778889999999999999887642 22
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 011201 258 PNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG--CEF----SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPK-- 329 (491)
Q Consensus 258 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 329 (491)
....++..+...+...++..++...+.+..... ... ....+..+...+...|+.++|...+....+.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 249 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 249 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence 234566677778888999999999888765431 111 123455666778889999999999988765543322
Q ss_pred -HhhHHHHHHHHHcCCCHhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011201 330 -DFDYFGLVEKLCGEGNAGIALEVVDELWK----KGNLPS-VIACTTLIEGLRRLRKGVEASGLMEKMLK 393 (491)
Q Consensus 330 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 393 (491)
...+..+...+...|++++|.+.+++... .+..|+ ...+..+...|.+.|++++|.+.+++..+
T Consensus 250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34456678899999999999999998764 233332 45677788899999999999999988755
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=5.6e-09 Score=93.40 Aligned_cols=219 Identities=7% Similarity=-0.021 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 171 NDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKC--------------REFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
+.+..+|+++.... +.+...|-.-+..+.+. +..++|..+|++..+...+-+...|...+....
T Consensus 33 ~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44566777776653 33455555544433222 234566666666655433334455666666666
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHH
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDG-LCNEGRVLKAC 315 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~ 315 (491)
+.|++++|..+|+++.+.........|...+..+.+.|+.+.|.++|+++.+.+.. +...|...... +...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 66677777777766665433322345666666666666666666666666655432 22222222221 23345666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGN-LP--SVIACTTLIEGLRRLRKGVEASGLMEKML 392 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 392 (491)
.+|+.+.+.... +...+...++.+.+.|+++.|..+|++...... .| ....|...+.--...|+.+.+.++++++.
T Consensus 190 ~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665554222 344555555555666666666666666554321 21 13345555555555566666665555554
Q ss_pred H
Q 011201 393 K 393 (491)
Q Consensus 393 ~ 393 (491)
+
T Consensus 269 ~ 269 (308)
T d2onda1 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=5.1e-09 Score=93.69 Aligned_cols=187 Identities=10% Similarity=-0.041 Sum_probs=126.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHH
Q 011201 275 KFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVD 354 (491)
Q Consensus 275 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 354 (491)
..+++..+|++..+...+.+...+...+..+.+.|+.+.|..+++.+++........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34667777777766544445556666677777777888888887777765544344567777777777778888888888
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CC
Q 011201 355 ELWKKGNLPSVIACTTLIE-GLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKG-LD 432 (491)
Q Consensus 355 ~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~ 432 (491)
.+.+.+.. +...|..... -+...|+.+.|..+|+.+.+. ..-+...|...+..+.+.|+.+.|..+|++..+.. ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 77766543 2333333322 233457778888888887775 23356777778888888888888888888876653 23
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 433 PD--GMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 433 p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 34677777777777888888888887765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=2.2e-09 Score=93.39 Aligned_cols=134 Identities=9% Similarity=-0.082 Sum_probs=96.7
Q ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 011201 151 PEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNI 230 (491)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 230 (491)
+....++..+..+|.+.|++++|+..|++..+.. +.+..+|+.+..+|.+.|++++|++.|++..+.... +..+|..
T Consensus 34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~ 110 (259)
T d1xnfa_ 34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLN 110 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHH
Confidence 3445677788888889999999999999888863 456788888888888899999999999888775432 4567777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011201 231 LISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIE 288 (491)
Q Consensus 231 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 288 (491)
+..++...|++++|.+.|++..+.... +......+..++.+.+..+....+......
T Consensus 111 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 111 RGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 888888888888888888888776432 444444444445555555555555444444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=9.1e-10 Score=99.99 Aligned_cols=227 Identities=6% Similarity=-0.122 Sum_probs=115.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHH
Q 011201 240 KFDLALGLFREMREKGCNPNVVSFNTLIRGFFGER--KFDEGVNMAYEMIELGCEFSSVTC-EILVDGLCNEGRVLKACE 316 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~ 316 (491)
++++|+.++++..+...+ +...|..+..++...+ ++++++..++++.+.... +...+ ......+...+..++|+.
T Consensus 88 ~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHH
Confidence 345555555555544322 4444544444444433 355555555555554322 22222 223344445555666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 317 LVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI 396 (491)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 396 (491)
.++.+.+.+.. +...|..+...+.+.|++++|...++...... .. ...+...+...+..+++...+.......
T Consensus 166 ~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~- 238 (334)
T d1dcea1 166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL----LK-ELELVQNAFFTDPNDQSAWFYHRWLLGR- 238 (334)
T ss_dssp HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH----HH-HHHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH----HH-HHHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence 65555555433 44455555555555555555544433322210 01 1122233444556666666666665542
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 011201 397 LPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLA-TYNS 475 (491)
Q Consensus 397 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ 475 (491)
.++...+..+...+...|+.++|...+....+.. +.+...|..+..+|.+.|++++|.+.+++.++. .|+.. -|..
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~ 315 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDD 315 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHH
Confidence 2233344445555566677777777766665542 124456666677777777777777777777643 45433 3343
Q ss_pred HHH
Q 011201 476 YMD 478 (491)
Q Consensus 476 ll~ 478 (491)
+..
T Consensus 316 L~~ 318 (334)
T d1dcea1 316 LRS 318 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=6.2e-10 Score=101.14 Aligned_cols=274 Identities=11% Similarity=-0.037 Sum_probs=192.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 160 AVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFV----------KCREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----------~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
++......+..++|+++++++.+.. +-+...|+..-..+. ..|++++|+.+++...+.... +...|.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 3333333444589999999998863 334556655443333 334588999999998876433 666777
Q ss_pred HHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011201 230 ILISGFCRNK--KFDLALGLFREMREKGCNPNVVSFNT-LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLC 306 (491)
Q Consensus 230 ~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 306 (491)
.+..++...+ ++++|+..+.++.+.... +...+.. ....+...|.+++|+..++.+.+.+.. +...|..+...+.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 7777776665 588999999999887443 5666544 446777889999999999999887654 7788888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 307 NEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASG 386 (491)
Q Consensus 307 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 386 (491)
+.|++++|...+....+.. | ....+...+...+..+++...+......... +...+..+...+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENVL--L---KELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHHH--H---HHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHhH--H---HHHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHH
Confidence 9999887755443322221 0 1122334455667778888888887776433 45556667777788899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 011201 387 LMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPD-GMTYHILVSGYTR 447 (491)
Q Consensus 387 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~ 447 (491)
.+.+..+... -+...+..+..++...|+.++|.+.++.+.+. .|+ ...|+.|...+.-
T Consensus 264 ~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 264 ELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHhH
Confidence 9988876421 14567778888999999999999999999886 464 4566666555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=6e-09 Score=90.52 Aligned_cols=197 Identities=10% Similarity=-0.050 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011201 262 SFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLC 341 (491)
Q Consensus 262 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 341 (491)
+|..+..+|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|+..|+++.+.... +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 3444445555555555555555555544322 4445555555555555555555555555544322 2334555555555
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011201 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADR 421 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 421 (491)
..|++++|.+.|+...+.... +......+..++.+.+..+.+..+..........+ ..++ ++..+ .+.......
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~--~~~~~~~~~ 190 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFY--LGNISEQTL 190 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHH--TTSSCHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHH--HHHHHHHHH
Confidence 556666666666555554322 23333333333344444444444444444322111 1111 11111 111111111
Q ss_pred HHHHHHHCCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011201 422 LRLLASTKGL-----DP-DGMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPD 469 (491)
Q Consensus 422 ~~~~~~~~g~-----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 469 (491)
+........ .| ...+|..+...|...|++++|.+.|++.+.. .|+
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 241 (259)
T d1xnfa_ 191 -MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 241 (259)
T ss_dssp -HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred -HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC
Confidence 111111000 01 1245666777888888888888888888743 454
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=7.3e-07 Score=78.44 Aligned_cols=134 Identities=9% Similarity=-0.048 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCChh
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP----SVSIYNVLINGFVKCREFDKALGFYDRMVRD----RV-KPDVV 226 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~ 226 (491)
.|..+...|...|++++|++.|.+......... -..+|+.+..+|.+.|++++|.+.+++..+. |- .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 455667778888888888888887765311111 2356777778888888888888777765432 10 00122
Q ss_pred hHHHHHHHHH-hcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 011201 227 TFNILISGFC-RNKKFDLALGLFREMREK----GCNP-NVVSFNTLIRGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 227 ~~~~li~~~~-~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
++..+...|. ..|++++|++.|++..+. +..+ -..++..+...+...|++++|++.|+++...
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~ 187 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 3344444443 346666666666655331 1110 1223455555566666666666666655543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.1e-06 Score=71.71 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=92.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 011201 161 VNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKK 240 (491)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 240 (491)
...+...|++++|++.|+++. .++..+|..+..+|...|++++|++.|++.++.... +...|..+..+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhcc
Confidence 555678889999988887652 467778888888999999999999999988876533 66788888888889999
Q ss_pred hhHHHHHHHHHHHcC------------CC--CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 011201 241 FDLALGLFREMREKG------------CN--PN-VVSFNTLIRGFFGERKFDEGVNMAYEMIELGCE 292 (491)
Q Consensus 241 ~~~A~~~~~~m~~~g------------~~--p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 292 (491)
+++|++.|++..... .. .+ ..++..+..++.+.|++++|.+.+....+....
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999988888876431 10 01 244556666777777777777777776655443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=2.3e-06 Score=69.87 Aligned_cols=126 Identities=11% Similarity=-0.029 Sum_probs=93.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 011201 197 INGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKF 276 (491)
Q Consensus 197 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 276 (491)
...+...|++++|++.|+++. .|+..+|..+..+|.+.|++++|++.|++..+.... +...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 455677899999999987652 467788888899999999999999999998887554 678888899999999999
Q ss_pred HHHHHHHHHHHHcCCC------------C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011201 277 DEGVNMAYEMIELGCE------------F---SSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL 327 (491)
Q Consensus 277 ~~a~~~~~~m~~~~~~------------~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (491)
++|++.|++..+.... . ...++..+..++.+.|++++|.+.+....+....
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999887653111 0 0133444555666777777777777666655443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.61 E-value=4.2e-05 Score=65.72 Aligned_cols=228 Identities=11% Similarity=-0.011 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011201 190 VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR----NKKFDLALGLFREMREKGCNPNVVSFNT 265 (491)
Q Consensus 190 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 265 (491)
...+..|...+.+.+++++|++.|++..+.| |...+..|...|.. ..+...|...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3444555555556666666666666665554 44444444444443 345555555555555443 2222333
Q ss_pred HHHHHHc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011201 266 LIRGFFG----ERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLC 341 (491)
Q Consensus 266 li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 341 (491)
+...+.. .++.+.|...++...+.|.. .....+...+.. ...
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~-------------------------------~~~ 121 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHD-------------------------------GKV 121 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHH-------------------------------CSS
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccC-------------------------------CCc
Confidence 3222221 33444555555554444321 111111111111 001
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 011201 342 GEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRR----LRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD----V 413 (491)
Q Consensus 342 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~ 413 (491)
.......+...+......+ +...+..+...|.. ..+...+..+++...+.| +......+...|.. .
T Consensus 122 ~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT 195 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC
T ss_pred ccchhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccc
Confidence 1223444444444444433 34444445544443 234445555555555543 33444444433333 3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 011201 414 GRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR----ENRRKEGENLVNEMLDEGF 466 (491)
Q Consensus 414 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 466 (491)
.+.++|..+|+...+.| +...+..|...|.+ ..+.++|.+.|++..+.|.
T Consensus 196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 56777777777776665 34555556555554 3366677777777766653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=1.2e-06 Score=77.03 Aligned_cols=205 Identities=9% Similarity=-0.000 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCC-
Q 011201 111 TFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPS- 189 (491)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 189 (491)
.|......+...+++++|...|.+......... ..+....+|..+..+|.+.|++++|++.+++..+......+
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~-----~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~ 113 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAG-----NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence 466777889999999999999998865321100 11334578899999999999999999999987654221222
Q ss_pred ---HHHHHHHHHHHHh-cCCHHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-
Q 011201 190 ---VSIYNVLINGFVK-CREFDKALGFYDRMVRD----RVKP-DVVTFNILISGFCRNKKFDLALGLFREMREKGCNPN- 259 (491)
Q Consensus 190 ---~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~- 259 (491)
..++..+...|.. .|++++|.+.|++..+. +..+ ...+|..+...+.+.|++++|++.|+++........
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~ 193 (290)
T d1qqea_ 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence 4556677777754 59999999999886542 2111 134578889999999999999999999877532211
Q ss_pred ----H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-C---hhhHHHHHHHHHh--cCCHHHHHHHHHH
Q 011201 260 ----V-VSFNTLIRGFFGERKFDEGVNMAYEMIELGCEF-S---SVTCEILVDGLCN--EGRVLKACELVID 320 (491)
Q Consensus 260 ----~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~---~~~~~~ll~~~~~--~g~~~~a~~~~~~ 320 (491)
. ..+...+..+...|+++.|.+.+++..+..... + ......++.++-. .+.+++|+..|+.
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 223445556777899999999888886653221 1 1233444554443 2335555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=0.00019 Score=61.45 Aligned_cols=158 Identities=15% Similarity=0.050 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHH
Q 011201 154 ERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVK----CREFDKALGFYDRMVRDRVKPDVVTFN 229 (491)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 229 (491)
+..+..+...+.+.+++++|++.|++..+. -+..++..|...|.. ..+...|...+......+ +.....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 456667778888899999999999999875 367777778888876 678999999999988765 445555
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011201 230 ILISGFCR----NKKFDLALGLFREMREKGCNPNVVSFNTLIRGFF----GERKFDEGVNMAYEMIELGCEFSSVTCEIL 301 (491)
Q Consensus 230 ~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 301 (491)
.+...+.. .++.+.|...++...+.|. ......+...+. .......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 55544443 4678889999998888764 233333333333 2344566666666655543 44555556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhC
Q 011201 302 VDGLCN----EGRVLKACELVIDFSRR 324 (491)
Q Consensus 302 l~~~~~----~g~~~~a~~~~~~~~~~ 324 (491)
...|.. ..+...+..+++...+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~ 175 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDL 175 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhhhccCCCcccccccchhhhhccccc
Confidence 555543 23444444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=3.3e-06 Score=62.60 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR 237 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 237 (491)
..-...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.++...+.+.. +...|..+..++..
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHH
Confidence 345677888888888888888888763 456777888888888888888888888888776533 67778888888888
Q ss_pred cCChhHHHHHHHHHHHcC
Q 011201 238 NKKFDLALGLFREMREKG 255 (491)
Q Consensus 238 ~~~~~~A~~~~~~m~~~g 255 (491)
.|++++|+..|++..+..
T Consensus 84 ~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 888888888888888653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.6e-06 Score=67.18 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
.+....+.|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|+..++.... +...|..+..++
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~ 88 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence 34455677888899999999999888874 457888888888888889999999988888776432 567888888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTL 266 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 266 (491)
...|++++|.+.+++....... +...+..+
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~-~~~~~~~l 118 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPH-DKDAKMKY 118 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 8888888888888888876432 34444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=5.8e-06 Score=61.20 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=61.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 011201 196 LINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERK 275 (491)
Q Consensus 196 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 275 (491)
-...+.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..+++..+.+.. +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 345566667777777777776665322 5566677777777777777777777777666443 66667777777777777
Q ss_pred HHHHHHHHHHHHHc
Q 011201 276 FDEGVNMAYEMIEL 289 (491)
Q Consensus 276 ~~~a~~~~~~m~~~ 289 (491)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.43 E-value=0.00046 Score=60.55 Aligned_cols=283 Identities=9% Similarity=0.025 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
|..--..+.+.|.+.|.++.|..++..+.. |..++.++.+.++++.|.+++.+.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------------------~~rl~~~~v~l~~~~~avd~~~k~------- 66 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------------------FGRLASTLVHLGEYQAAVDGARKA------- 66 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC-------------------HHHHHHHHHTTTCHHHHHHHHHHH-------
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------------------HHHHHHHHHhhccHHHHHHHHHHc-------
Confidence 334455677888888999999888876532 667888888999999887776543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
-+..+|..+...+.+......| .+...+...+......++..|-..|.+++...+++..... -..+...++.++
T Consensus 67 ~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~ 140 (336)
T d1b89a_ 67 NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 140 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHH
Confidence 3667888888888887766543 2223333446666677888899999999999999877643 234677788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHhhHHHHHHH
Q 011201 268 RGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRG--------VLPKDFDYFGLVEK 339 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~ 339 (491)
..|++.+. ++ +.+.+...... .-...++..|-+.+-+.++.-++..+.... ..++.......+..
T Consensus 141 ~lyak~~~-~k---l~e~l~~~s~~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~ 213 (336)
T d1b89a_ 141 ILYSKFKP-QK---MREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 213 (336)
T ss_dssp HHHHTTCH-HH---HHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHH
T ss_pred HHHHHhCh-HH---HHHHHHhcccc---CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHH
Confidence 88887653 33 33333332211 122334444444444444443333321110 01111112222333
Q ss_pred HHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011201 340 LCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDA 419 (491)
Q Consensus 340 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 419 (491)
+.+.++.+ .|-..+..|... +.+-...++..+... + |. ..++..+.+.+++...
T Consensus 214 ~~k~~N~e-------------------~~~~~i~~yL~~-~p~~i~~lL~~v~~~-~--d~---~r~V~~~~k~~~l~li 267 (336)
T d1b89a_ 214 ITKVANVE-------------------LYYRAIQFYLEF-KPLLLNDLLMVLSPR-L--DH---TRAVNYFSKVKQLPLV 267 (336)
T ss_dssp HHHCSSTH-------------------HHHHHHHHHHHH-CGGGHHHHHHHHGGG-C--CH---HHHHHHHHHTTCTTTT
T ss_pred HHccCChH-------------------HHHHHHHHHHHc-CHHHHHHHHHHhccC-C--CH---HHHHHHHHhcCCcHHH
Confidence 33333333 333333333322 122222222222211 1 11 2344445566677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011201 420 DRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLV 458 (491)
Q Consensus 420 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 458 (491)
..+++...+.+ +..+.+++...|...++++.-.+..
T Consensus 268 ~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 268 KPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 77777766554 3467788888888888865544443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=6.5e-06 Score=64.82 Aligned_cols=95 Identities=13% Similarity=0.236 Sum_probs=74.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
......|.+.|++++|+..|++..+.... +...|..+..+|...|++++|++.|++..+.... +..+|..+..++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 34456677888888888888888776533 6777888888888888888888888888876543 667888888888888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 011201 274 RKFDEGVNMAYEMIELG 290 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~ 290 (491)
|++++|...+++..+..
T Consensus 92 g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK 108 (159)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 88888888888888765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=4.9e-06 Score=68.35 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
+......|.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|+..|+...+.... +..+|..+..+|.
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~~~~ 83 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 3444555555555555555555555442 334455555555555555555555555555443211 3344555555555
Q ss_pred hcCChhHHHHHHHHHH
Q 011201 237 RNKKFDLALGLFREMR 252 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~ 252 (491)
+.|++++|+..|++..
T Consensus 84 ~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 84 EMESYDEAIANLQRAY 99 (201)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=7.7e-06 Score=67.13 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011201 188 PSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLI 267 (491)
Q Consensus 188 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 267 (491)
|+...+......|.+.|++++|+..|++..+.... +...|+.+..+|.+.|++++|+..|++..+.... +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 67777788899999999999999999998876533 7788999999999999999999999999876433 678899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc
Q 011201 268 RGFFGERKFDEGVNMAYEMIEL 289 (491)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~m~~~ 289 (491)
.+|.+.|++++|+..|++..+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.28 E-value=0.00039 Score=61.04 Aligned_cols=268 Identities=11% Similarity=0.002 Sum_probs=123.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...+.+.
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDG 82 (336)
T ss_dssp ----------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhC
Confidence 345555566666666666654432 5556666666666666666655431 455666666666655
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011201 239 KKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELV 318 (491)
Q Consensus 239 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 318 (491)
....-| .+...+...+......++..|-..|.+++...+++..... -..+...++.++..|++.+. ++..+.+
T Consensus 83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l 155 (336)
T d1b89a_ 83 KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHL 155 (336)
T ss_dssp TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHH
Confidence 544332 2222223334455556666666666666666666655432 13344556666666665432 2222222
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 011201 319 IDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILP 398 (491)
Q Consensus 319 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 398 (491)
... . +......++..|-+.+-+++ ++..|.+.|.+++|..+. .++ .+
T Consensus 156 ~~~---s---~~y~~~k~~~~c~~~~l~~e----------------------lv~Ly~~~~~~~~A~~~~---i~~--~~ 202 (336)
T d1b89a_ 156 ELF---W---SRVNIPKVLRAAEQAHLWAE----------------------LVFLYDKYEEYDNAIITM---MNH--PT 202 (336)
T ss_dssp HHH---S---TTSCHHHHHHHHHTTTCHHH----------------------HHHHHHHTTCHHHHHHHH---HHS--TT
T ss_pred Hhc---c---ccCCHHHHHHHHHHcCChHH----------------------HHHHHHhcCCHHHHHHHH---HHc--ch
Confidence 221 1 01112223333333333333 333344444444443332 111 11
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011201 399 DSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDG-----------MTYHILVSGYTRENRRKEGENLVNEMLDEGFI 467 (491)
Q Consensus 399 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (491)
+..-....+..+.+.++.+...++.....+. .|+. .--..++..+-+.+++.-...+++.....|
T Consensus 203 ~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n-- 278 (336)
T d1b89a_ 203 DAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN-- 278 (336)
T ss_dssp TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC--
T ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC--
Confidence 1111122233333444444333333322221 1110 011334555566677777777776665544
Q ss_pred CCHHHHHHHHHHHHhcCCcc
Q 011201 468 PDLATYNSYMDGLSNARKSV 487 (491)
Q Consensus 468 p~~~~~~~ll~~~~~~g~~~ 487 (491)
+..+.+++.+.|...++++
T Consensus 279 -~~~vn~al~~lyie~~d~~ 297 (336)
T d1b89a_ 279 -NKSVNESLNNLFITEEDYQ 297 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHH
T ss_pred -hHHHHHHHHHHHhCcchhH
Confidence 4568888888888888764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.21 E-value=8.7e-06 Score=59.64 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=69.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRN 238 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 238 (491)
.....+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|++..+.... +...|..+...|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHC
Confidence 34666778888888888888887763 346788888888888888888888888887775433 567777888888888
Q ss_pred CChhHHHHHHHHH
Q 011201 239 KKFDLALGLFREM 251 (491)
Q Consensus 239 ~~~~~A~~~~~~m 251 (491)
|++++|++.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8888888888764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.15 E-value=1.2e-05 Score=58.89 Aligned_cols=85 Identities=12% Similarity=-0.051 Sum_probs=37.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 011201 234 GFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLK 313 (491)
Q Consensus 234 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 313 (491)
.+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|+..|++..+.... +..++..+...|...|++++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHH
Confidence 344444444444444444443222 3444444444444444444444444444443322 33444444444444444444
Q ss_pred HHHHHHH
Q 011201 314 ACELVID 320 (491)
Q Consensus 314 a~~~~~~ 320 (491)
|.+.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=7.3e-05 Score=59.21 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+......+.+.|++++|+..|.+..+......... +.-......+ ...+|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~---------------~~~~~~~~~~-------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------NEEAQKAQAL-------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------SHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc---------------hHHHhhhchh-------HHHHHHHHHHH
Confidence 3455667788899999999999998877643222100 0000111111 11245556666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
|.+.|++++|++.+++..+.... ++.+|..+..+|...|++++|+..|++..+..
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 67777777777777766665432 56666667777777777777777777766654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=1.9e-05 Score=58.59 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=62.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCC-hhhHHHHHHH
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCRE---FDKALGFYDRMVRDRVKPD-VVTFNILISG 234 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~~li~~ 234 (491)
.+++.+...+++++|.+.|++..+.. +.+..++..+..++.+.++ +++|+++|+++...+..|+ ..+|..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 45666777777777777777777753 4566777777777766544 3457777777766543333 2356667777
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 011201 235 FCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~ 254 (491)
|.+.|++++|++.|+++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777777765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.9e-05 Score=58.61 Aligned_cols=92 Identities=17% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCC---HhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 011201 301 LVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGN---AGIALEVVDELWKKGNLPS-VIACTTLIEGLR 376 (491)
Q Consensus 301 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~ 376 (491)
+++.+...+++++|++.|+..+..+.. +..++..+..++.+.++ +++|+++|+++...+..|+ ..+|..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 334444444444444444444444322 33334444444443322 2234444444444332222 123444444455
Q ss_pred hcCChHHHHHHHHHHHH
Q 011201 377 RLRKGVEASGLMEKMLK 393 (491)
Q Consensus 377 ~~g~~~~a~~~~~~m~~ 393 (491)
+.|++++|++.|+++++
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 55555555555555544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=0.00018 Score=56.80 Aligned_cols=144 Identities=10% Similarity=-0.071 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFF 271 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 271 (491)
.+......+.+.|++++|++.|.+....... .. +..+.-......+ ...+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~--~~------------~~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEY--ES------------SFSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT--CC------------CCCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh--cc------------ccchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 3455667788889999999988877653110 00 0001111111111 1246778899999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhH---
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGI--- 348 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--- 348 (491)
+.|++++|+..++..++.... +..++..+..+|...|++++|...|+...+.+.. +..+...+-...-+.+....
T Consensus 74 k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~~~e~ 151 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREK 151 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988643 7888999999999999999999999999887643 45555555444433333322
Q ss_pred --HHHHHHHHHH
Q 011201 349 --ALEVVDELWK 358 (491)
Q Consensus 349 --a~~~~~~m~~ 358 (491)
..++|+.+..
T Consensus 152 ~~~~~~f~~~~~ 163 (170)
T d1p5qa1 152 KLYANMFERLAE 163 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 2344555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.90 E-value=0.00016 Score=57.56 Aligned_cols=128 Identities=12% Similarity=0.076 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF 235 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 235 (491)
............|++++|.+.|.+........+-. .....+.+...-..+... ....+..+...+
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~-----------~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~ 77 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD-----------DLRDFQFVEPFATALVED----KVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG-----------GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc-----------cCcchHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34455677889999999999999988763221100 001101111111111111 234567788888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-----HcCCCCChhhHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMI-----ELGCEFSSVTCE 299 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~~ 299 (491)
.+.|++++|+..++++.+.... +...|..++.+|.+.|+..+|++.|+++. +.|+.|...+-.
T Consensus 78 ~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 8888888888888888876544 77888888888888888888888888764 358888766543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00019 Score=53.63 Aligned_cols=97 Identities=7% Similarity=0.156 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-----hhhHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVK-PD-----VVTFN 229 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~-----~~~~~ 229 (491)
.+..+...+.+.|++++|+..|.+..+.. +.+..+|..+..+|.+.|++++|++.++++++.... +. ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45567788889999999999999988874 456888888999999999999999999887653211 11 13455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 230 ILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 230 ~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
.+...+...+++++|++.|++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5666677777888888888776554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.86 E-value=0.00042 Score=54.52 Aligned_cols=113 Identities=9% Similarity=0.092 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 011201 155 RIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISG 234 (491)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 234 (491)
..+......+.+.|++++|+..|.+........+... .......+.+ ....|+.+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~---------------~~~~~~~~~~-------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS---------------EKESKASESF-------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC---------------HHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc---------------hhhhhhcchh-------HHHHHHhHHHH
Confidence 4566677888899999999999988765422111100 0000001111 12234455566
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 235 FCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 235 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
|.+.|++++|+..+++..+.... +..+|..+..++...|++++|+..|+++.+..
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666666655332 55666666666666666666666666666543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=8.9e-06 Score=77.16 Aligned_cols=207 Identities=12% Similarity=-0.029 Sum_probs=103.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH--
Q 011201 159 FAVNAFVKANRMNDGLLAFEAMRKLIDGRPSV-SIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGF-- 235 (491)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-- 235 (491)
.+..++...|++++| ++++... .|+. ..++...... ...+..+.+.++...+....++..-....+..+
T Consensus 25 ~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~ 96 (497)
T d1ya0a1 25 GPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVEQDLW--NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLE 96 (497)
T ss_dssp CSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHH
Confidence 344556666666665 5555543 1321 1122111111 112455666676665544333433222222222
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011201 236 CRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKAC 315 (491)
Q Consensus 236 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 315 (491)
...+.++.|+..+.+..+... ++...+..+...+.+.|+.++|...+....+.. ...++..+...+...|++++|.
T Consensus 97 ~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~ 172 (497)
T d1ya0a1 97 AASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAE 172 (497)
T ss_dssp HHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHH
Confidence 122344444444443332211 245566777777888888888887777665432 1356667788888889999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011201 316 ELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLR 379 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 379 (491)
..+.+..+.... +...|+.+...+...|+..+|...|.+...... |-..++..|...+.+..
T Consensus 173 ~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 173 SYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhh
Confidence 999888877544 566788888888889999999988888877643 46777777777765543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.82 E-value=0.00053 Score=52.91 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 011201 156 IFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRP---SVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILI 232 (491)
Q Consensus 156 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 232 (491)
.+..-...+.+.|++.+|+..|.+........+ +..... ....+ ...+|+.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~~-------~~~~~~Nla 74 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKNI-------EISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhhH-------HHHHHhhHH
Confidence 344556778889999999999988876432111 111110 00000 123566677
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
.+|.+.|++++|++.+++..+.... +..+|..+..++...|++++|+..|++..+..
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777766433 66777777777777777777777777777664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=5.4e-06 Score=78.68 Aligned_cols=227 Identities=7% Similarity=-0.057 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHH
Q 011201 172 DGLLAFEAMRKLIDGRPS-VSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDV-VTFNILISGFCRNKKFDLALGLFR 249 (491)
Q Consensus 172 ~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~ 249 (491)
+|.+.|++..+.. |+ ..++..+..++...|++++| |+++.... |+- ..++..-. +. ...+..+.+.++
T Consensus 4 eA~q~~~qA~~l~---p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~-Lw-~~~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEVLK---ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQD-LW-NHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHHH---GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHH-HH-HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHH-HH-HHHHHHHHHHHH
Confidence 6778888887652 33 45566777788888888776 55554431 111 11111111 11 112455666777
Q ss_pred HHHHcCCCCCHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011201 250 EMREKGCNPNVVSFNTLIRGF--FGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVL 327 (491)
Q Consensus 250 ~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 327 (491)
+..+....++..-....+..+ ...+.++.++..+....+.. ..+...+..+...+.+.|+.+.|...+.......
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 666554333332222222222 22344555555444433322 2244566677778888899988887776655432
Q ss_pred CCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 328 PKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLL 407 (491)
Q Consensus 328 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 407 (491)
....+..+...+...|++++|...|++..+..+. +...|+.+...+...|+..+|...|.+.+... .|...++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 1245777889999999999999999999987654 67899999999999999999999999998863 45777888888
Q ss_pred HHHHhcC
Q 011201 408 EDLCDVG 414 (491)
Q Consensus 408 ~~~~~~g 414 (491)
..+.+..
T Consensus 228 ~~~~~~~ 234 (497)
T d1ya0a1 228 KALSKAL 234 (497)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7776543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=0.00034 Score=55.55 Aligned_cols=125 Identities=12% Similarity=0.048 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHH
Q 011201 112 FLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVS 191 (491)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (491)
.......+...|++++|.+.|...+....... +.. ....+-+...-..+.. ....
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~----l~~----------------~~~~~w~~~~r~~l~~-----~~~~ 68 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPV----LDD----------------LRDFQFVEPFATALVE-----DKVL 68 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSST----TGG----------------GTTSTTHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccc----ccc----------------CcchHHHHHHHHHHHH-----HHHH
Confidence 34456778889999999999999887532110 000 0000011111111111 1244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMRE-----KGCNPNVVS 262 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~ 262 (491)
.+..+...+.+.|++++|+..++.+.+.... +...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 5666777777777777777777777665432 666777777777777777777777777633 477777654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.79 E-value=0.00037 Score=53.85 Aligned_cols=123 Identities=11% Similarity=0.003 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFF 271 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 271 (491)
.+......+.+.|++++|+..|.+....-. . ....... ......... ...+|+.+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~--~-------------~~~~~~~-~~~~~~~~~----~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFI--H-------------TEEWDDQ-ILLDKKKNI----EISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT--T-------------CTTCCCH-HHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--c-------------hhhhhhH-HHHHhhhhH----HHHHHhhHHHHHH
Confidence 344556677788999999999988765311 0 0000000 000111111 2457888999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011201 272 GERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGL 336 (491)
Q Consensus 272 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (491)
+.|++++|++.++...+... .+..+|..+..++...|++++|...|+...+.++. +..+...+
T Consensus 79 ~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred Hhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 99999999999999998764 37889999999999999999999999999987643 44444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.00022 Score=56.26 Aligned_cols=128 Identities=12% Similarity=0.078 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 011201 157 FHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFC 236 (491)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 236 (491)
+......+...|++++|++.|.++.+.. + .........+... +. ..+...|..+..++.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~---~----------~~~~~~~~~~~~~----~~----~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV---E----------GSRAAAEDADGAK----LQ----PVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH---H----------HHHHHSCHHHHGG----GH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh---h----------hhhhhhhhHHHHH----hC----hhhHHHHHHHHHHHH
Confidence 4455667788899999999888776421 0 0000001110000 00 013345556666777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011201 237 RNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCN 307 (491)
Q Consensus 237 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 307 (491)
+.|++++|+..+++..+.... +..+|..+..++.+.|++++|++.|++..+.... +..+...+..+..+
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQK 157 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 777777777777777665433 5667777777777777777777777777765432 44445444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00021 Score=53.38 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=23.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011201 233 SGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMI 287 (491)
Q Consensus 233 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 287 (491)
..+.+.|++++|++.|++..+.+.. +...|..+..+|.+.|++++|++.+++++
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3344444444444444444443222 34444444444444444444444444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.69 E-value=0.00036 Score=54.99 Aligned_cols=129 Identities=10% Similarity=0.011 Sum_probs=89.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011201 194 NVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREKGCNPNVVSFNTLIRGFFGE 273 (491)
Q Consensus 194 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 273 (491)
......+.+.|++++|++.|.+..+. ...........+... +.. .+...|..+..++.+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~----~~~----~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAK----LQP----VALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGG----GHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHH----hCh----hhHHHHHHHHHHHHhh
Confidence 34556677889999999998876541 010101111111110 111 1456778888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC
Q 011201 274 RKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEG 344 (491)
Q Consensus 274 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 344 (491)
|++++|+..+++.++.... +..+|..+..++.+.|++++|++.|+...+.... +..+...+..+..+..
T Consensus 91 ~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIK 159 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 9999999999999987643 7788999999999999999999999999987544 5555666555544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.53 E-value=0.0027 Score=49.60 Aligned_cols=143 Identities=8% Similarity=-0.028 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh-HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011201 192 IYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFD-LALGLFREMREKGCNPNVVSFNTLIRGF 270 (491)
Q Consensus 192 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~ 270 (491)
.+.-....+.+.|++++|...|++.... +-..-... ......+.+ ....|+.+..+|
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~---------------~~~~~~~~~~~~~~~~~~-------~~~~~~Nla~~~ 74 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSW---------------LEMEYGLSEKESKASESF-------LLAAFLNLAMCY 74 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HTTCCSCCHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhhccchhhhhhcchh-------HHHHHHhHHHHH
Confidence 3455667777888888888888775431 00000000 000111111 234577788899
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHh-HH
Q 011201 271 FGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAG-IA 349 (491)
Q Consensus 271 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a 349 (491)
.+.|++++|+..++...+... .+..+|..+..++...|++++|...|+.+.+.... +......+-....+.+... ..
T Consensus 75 ~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 75 LKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999998764 37888999999999999999999999999987543 4445555544444444332 34
Q ss_pred HHHHHHHHH
Q 011201 350 LEVVDELWK 358 (491)
Q Consensus 350 ~~~~~~m~~ 358 (491)
.+++..|.+
T Consensus 153 kk~~~~~f~ 161 (168)
T d1kt1a1 153 RRTYANMFK 161 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455555543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.46 E-value=8.8e-05 Score=63.21 Aligned_cols=123 Identities=11% Similarity=0.015 Sum_probs=76.2
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChh
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPD-VVTFNILISGFCRNKKFD 242 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~ 242 (491)
..+.|++++|+..+++..+.. +.|...+..+...|+..|++++|.+.|+...+.. |+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccH
Confidence 446789999999999988853 5678889999999999999999999999887753 33 333433333332222222
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 011201 243 LALGLFREMREKGCNPNVVSFNTLIRGFFGERKFDEGVNMAYEMIELG 290 (491)
Q Consensus 243 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 290 (491)
++..-...-...+-.++...+......+...|+.++|.+.++++.+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 221111100001111223334444566777888888888888877653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.44 E-value=0.00014 Score=61.87 Aligned_cols=124 Identities=6% Similarity=-0.089 Sum_probs=86.5
Q ss_pred HHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011201 118 SLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLI 197 (491)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 197 (491)
-..+.|++++|+..+++.++.. |.+...+..+...|+..|++++|+..|+...+.. +-+...+..+.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-----------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~ 71 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-----------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLR 71 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 3456799999999999998764 6678899999999999999999999999999873 23455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011201 198 NGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCRNKKFDLALGLFREMREK 254 (491)
Q Consensus 198 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 254 (491)
..+...+..+++..-...-...+-.++...+......+.+.|+.++|.++++++.+.
T Consensus 72 ~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 72 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 555444444333222211111111222334445566788899999999999998775
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.44 E-value=0.00049 Score=52.52 Aligned_cols=72 Identities=7% Similarity=-0.088 Sum_probs=47.1
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 011201 164 FVKANRMNDGLLAFEAMRKLIDGRPSVSIYNVLINGFVKCR----------EFDKALGFYDRMVRDRVKPDVVTFNILIS 233 (491)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 233 (491)
|-+.+.+++|+..|+...+.. +.+..++..+..+|...+ .+++|++.|++..+.... +..+|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHH
Confidence 446677899999999998864 567888888888877543 345666666666554322 4455555555
Q ss_pred HHHhc
Q 011201 234 GFCRN 238 (491)
Q Consensus 234 ~~~~~ 238 (491)
+|...
T Consensus 84 ~y~~~ 88 (145)
T d1zu2a1 84 AYTSF 88 (145)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.41 E-value=0.0024 Score=49.16 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=40.3
Q ss_pred HHHHHH--HHHHHHcCChhHHHHHHHHHHHhcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011201 155 RIFHFA--VNAFVKANRMNDGLLAFEAMRKLIDGRPS----------VSIYNVLINGFVKCREFDKALGFYDRMV 217 (491)
Q Consensus 155 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~~~~~~A~~~~~~m~ 217 (491)
.+|..+ ...+.+.|++++|+..|++..+.....|+ ...|+.+..+|.+.|++++|.+.+++..
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 445555 55566778888888888887765332232 3456666666777777777766666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.36 E-value=0.00055 Score=52.23 Aligned_cols=32 Identities=9% Similarity=-0.096 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRL 378 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 378 (491)
+++|++.|++..+.++. +..+|..+..+|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHc
Confidence 34555556655554433 455555555555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.09 E-value=0.0076 Score=46.19 Aligned_cols=97 Identities=14% Similarity=0.023 Sum_probs=65.6
Q ss_pred HHHHH--HHHHHhcCChHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 011201 367 ACTTL--IEGLRRLRKGVEASGLMEKMLKEG-ILPD----------SVTFNCLLEDLCDVGRTVDADRLRLLASTK---- 429 (491)
Q Consensus 367 ~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~-~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 429 (491)
+|..+ ...+...|++++|++.|++.++.. -.|+ ...|+.+..+|.+.|++++|...++...+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 334556678888888887776531 0111 356777888888888888888877776542
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011201 430 -GLDPD-----GMTYHILVSGYTRENRRKEGENLVNEMLD 463 (491)
Q Consensus 430 -g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 463 (491)
...++ ...|..+..+|...|++++|++.|++.++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121 23566778899999999999999998764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.96 E-value=0.031 Score=39.62 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 011201 366 IACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGL 431 (491)
Q Consensus 366 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 431 (491)
..++..++.+.+.|+-+...++++.+.+. -+++......+..+|.+.|...++.+++.++-+.|+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34444555556666666666666655442 355555566666666666666666666666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.0048 Score=42.69 Aligned_cols=83 Identities=7% Similarity=-0.001 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCCCcccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 011201 108 DHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSNDGIFSCPEMERIFHFAVNAFVKANRMNDGLLAFEAMRKLIDGR 187 (491)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 187 (491)
+...+-.+...+.+.|++++|...+++..+...... ...+....++..+..++.+.|++++|+..++++.+.. +
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~----~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P 77 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE----ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--P 77 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC----CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh----ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--c
Confidence 344566788999999999999999998875432111 1224456789999999999999999999999998873 3
Q ss_pred CCHHHHHHH
Q 011201 188 PSVSIYNVL 196 (491)
Q Consensus 188 ~~~~~~~~l 196 (491)
-+..+++.+
T Consensus 78 ~~~~a~~Nl 86 (95)
T d1tjca_ 78 EHQRANGNL 86 (95)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 345666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.84 E-value=0.034 Score=39.43 Aligned_cols=140 Identities=10% Similarity=0.081 Sum_probs=92.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 011201 306 CNEGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEAS 385 (491)
Q Consensus 306 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 385 (491)
.-.|.+++..+++.+..... +..-||.+|--....-+-+...++++.+-+. .|. ...++.....
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 34577777777777766553 3444666665555555555555555554332 111 1122222222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011201 386 GLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEMLDEG 465 (491)
Q Consensus 386 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 465 (491)
.-+-.+ .-+...+...++.+..+|+-++-.++++.+.+.+ +++....-.+..+|.+-|...++-+++.+..++|
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 222111 1244556777888899999999999999987754 7889999999999999999999999999999999
Q ss_pred CC
Q 011201 466 FI 467 (491)
Q Consensus 466 ~~ 467 (491)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 75
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.0071 Score=41.78 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 011201 158 HFAVNAFVKANRMNDGLLAFEAMRKLIDG----RP-SVSIYNVLINGFVKCREFDKALGFYDRMVRD 219 (491)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 219 (491)
..+...+.+.|++++|+..|++..+.... .+ ...+++.|..+|.+.|++++|++.+++..+.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 35666777778888888777776654211 11 1456777777777777777777777777665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.64 E-value=0.035 Score=40.90 Aligned_cols=81 Identities=11% Similarity=-0.078 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 011201 379 RKGVEASGLMEKMLKEGILPDSVTFNCLLEDLCD----VGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTR----ENR 450 (491)
Q Consensus 379 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~ 450 (491)
.+.++|++++++..+.| +......|...|.. ..+.++|.++|+...+.| +......|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 44555666666555544 33333333333332 345666667776666654 34444445555544 346
Q ss_pred HHHHHHHHHHHHHCC
Q 011201 451 RKEGENLVNEMLDEG 465 (491)
Q Consensus 451 ~~~A~~~~~~m~~~~ 465 (491)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 777777777776665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.51 E-value=0.06 Score=39.54 Aligned_cols=15 Identities=7% Similarity=-0.048 Sum_probs=6.3
Q ss_pred ChhHHHHHHHHHHHc
Q 011201 240 KFDLALGLFREMREK 254 (491)
Q Consensus 240 ~~~~A~~~~~~m~~~ 254 (491)
+.++|++++++..+.
T Consensus 38 ~~~~a~~~~~~aa~~ 52 (133)
T d1klxa_ 38 NKQKLFQYLSKACEL 52 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhhhhcc
Confidence 334444444444433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.17 E-value=0.99 Score=31.92 Aligned_cols=76 Identities=5% Similarity=-0.063 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011201 398 PDSVTFNCLLEDLCDVG---RTVDADRLRLLASTKGLDPD-GMTYHILVSGYTRENRRKEGENLVNEMLDEGFIPDLATY 473 (491)
Q Consensus 398 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 473 (491)
+...|--....++.+.. +.++++.+++.+.+.+ +.+ ...+-.|..+|.+.|++++|.+.++.+++ +.|+..-.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHHH
Confidence 44555555555555543 3456777777766542 112 23445566677777888888887777774 35655443
Q ss_pred HHH
Q 011201 474 NSY 476 (491)
Q Consensus 474 ~~l 476 (491)
..+
T Consensus 110 ~~L 112 (124)
T d2pqrb1 110 GAL 112 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.99 E-value=1.4 Score=31.15 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=40.1
Q ss_pred CHhhHHHHHHHHHcCC---CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 011201 329 KDFDYFGLVEKLCGEG---NAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDS 400 (491)
Q Consensus 329 ~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 400 (491)
+..+-.....++.++. ++++++.+|+++.+.+..-....+..|..+|.+.|++++|.+.++.+++ +.|+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 3344444444555443 3456777777766543221124555566667777777777777777776 34553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.50 E-value=1.9 Score=28.65 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011201 381 GVEASGLMEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILV 442 (491)
Q Consensus 381 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 442 (491)
.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++++.++.+. ..+...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 33555556666666677777777777777777777777777777666542 23445555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.49 E-value=3.2 Score=27.61 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011201 346 AGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGILPDSVTFNCLLE 408 (491)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 408 (491)
.-++.+-++.+......|++....+.+.+|.+.+++.-|.++|+-.+.+ +..+...|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 3345555666666666777777777777777777777777777766554 2223445554443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.36 E-value=13 Score=32.80 Aligned_cols=163 Identities=9% Similarity=-0.065 Sum_probs=80.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011201 308 EGRVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGL 387 (491)
Q Consensus 308 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 387 (491)
.+..+.+..++......+. +.......+......+++..+...++.|..... -...-.--+..++...|+.++|..+
T Consensus 265 ~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHH
Confidence 3445555555555444432 222233334444455666666666665533211 1223333445556666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 388 MEKMLKEGILPDSVTFNCLLEDLCDVGRTVDADRLRLLASTKGLD--PDGM----TYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 388 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--p~~~----~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
|...... ++ -|..+.. .+.|..-.. ...... ++.. .-..-+..+...|+..+|...|..+
T Consensus 342 ~~~~a~~---~~--fYG~LAa--~~Lg~~~~~-------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l 407 (450)
T d1qsaa1 342 LHQLMQQ---RG--FYPMVAA--QRIGEEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (450)
T ss_dssp HHHHHTS---CS--HHHHHHH--HHTTCCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcC---CC--hHHHHHH--HHcCCCCCC-------CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence 6665431 22 2222221 222211000 000000 0000 0112355677889999999988888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 011201 462 LDEGFIPDLATYNSYMDGLSNARKSVRQT 490 (491)
Q Consensus 462 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 490 (491)
... .+......+.....+.|.++.|+
T Consensus 408 ~~~---~~~~~~~~la~lA~~~g~~~~aI 433 (450)
T d1qsaa1 408 VKS---KSKTEQAQLARYAFNNQWWDLSV 433 (450)
T ss_dssp HTT---CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhC---CCHHHHHHHHHHHHHCCChhHHH
Confidence 743 35667777777778888877654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=80.90 E-value=18 Score=31.87 Aligned_cols=322 Identities=11% Similarity=-0.023 Sum_probs=174.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCCCCCC--Ccc-----cCCchHHHHHHHHHHHHHcCChhHHHHHHH
Q 011201 106 RHDHTTFLFIVRSLASSYRFSELHSVLNFISANPCPCSND--GIF-----SCPEMERIFHFAVNAFVKANRMNDGLLAFE 178 (491)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 178 (491)
+.+...-.....++...|+...|...+..+-..+...+.. .++ ....+...+-.-+......|+...|..+..
T Consensus 99 p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~ 178 (450)
T d1qsaa1 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAG 178 (450)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHh
Confidence 3455555677777888888888888887776655332100 000 000001111112223333344443333332
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHcCC
Q 011201 179 AMRKLIDGRPSVSIYNVLINGFVKCREFDKALGFYDRMVRDRVKPDVVTFNILISGFCR--NKKFDLALGLFREMREKGC 256 (491)
Q Consensus 179 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~ 256 (491)
.+.. .........+..... ...+...... . ..+......+..++.+ ..+.+.|..++........
T Consensus 179 ~l~~-----~~~~~~~a~~~l~~~---p~~~~~~~~~---~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~ 245 (450)
T d1qsaa1 179 QMPA-----DYQTIASAIISLANN---PNTVLTFART---T--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ 245 (450)
T ss_dssp TCCG-----GGHHHHHHHHHHHHC---GGGHHHHHHH---S--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred hCCh-----hHHHHHHHHHHHHhC---hHhHHHHHhc---C--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc
Confidence 2211 112223333333221 1222221111 1 1233333333444433 3577888888888776533
Q ss_pred CCCHHHHHH----HHHHHHcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 011201 257 NPNVVSFNT----LIRGFFGERKFDEGVNMAYEMIELGCEFSSVTCEILVDGLCNEGRVLKACELVIDFSRRGVLPKDFD 332 (491)
Q Consensus 257 ~p~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 332 (491)
. +...+.. +.......+..+.+..++......+. +.......+......+++..+...+..+... ......-
T Consensus 246 ~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~ 321 (450)
T d1qsaa1 246 L-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEW 321 (450)
T ss_dssp C-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHH
T ss_pred c-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHH
Confidence 2 2222222 22333455777888888887766543 4455555666677789999999999877533 2223445
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC-HHH---HHHH
Q 011201 333 YFGLVEKLCGEGNAGIALEVVDELWKKGNLPSVIACTTLIEGLRRLRKGVEASGLMEKMLKEGI--LPD-SVT---FNCL 406 (491)
Q Consensus 333 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~-~~~---~~~l 406 (491)
..-+..++...|+.+.|...|...... ++ |-.++.+- +.|..-. +..... .+. ... -..-
T Consensus 322 ~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~r 387 (450)
T d1qsaa1 322 RYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGPEMAR 387 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHH
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCC-------CCcCCCCccHHHhhhcChHHHH
Confidence 567889999999999999999998653 23 44443322 2232100 000000 000 000 1123
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011201 407 LEDLCDVGRTVDADRLRLLASTKGLDPDGMTYHILVSGYTRENRRKEGENLVNEM 461 (491)
Q Consensus 407 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 461 (491)
+..+...|....|...|..+.+. .+......+.....+.|.++.|+....+.
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 45567889999999999888764 25566667788888999999999887776
|