Citrus Sinensis ID: 011204

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRDDEGEGNSYPGFSGGGSGSGGTNRNNGDGDFFGMIFGSGASRLPPPSPSTSIFLSLLIILILYTITNHDAPLSLQLLLL
cccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHcccccccccccccccccccccEEEEcccccccccccccccHHHHHHccccEEEEEEEcEEEEEEcEEEEccccEEEccccEEEEcEEEEEEEcccEEEEEEcEEEEcccccccccccccccccccccccccccEEEEccccEEEEcccccccccccEEEEEcccEEEEEEEEEcccccccccccccccccccccEEEEEEEccccccccccccccccEEEEEccEEEccccEEEEcccccEEEEEcEEEEcccccccccEEEEEccccccccccEEEEcccEEEcccEEccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHEEEcccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHcccccccEEEEEcccEEEEEccccccccEEEEEccccccccccccEEEEEEccccccccccccccccEEEEEEEcccccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHc
MLLNTCILLECLFFLIFSSSatisslnltlphqhpdpdavaQDVQRRVNVSLSRRQALAINAqcqtgnpiddcwhcdpnwaanRQRLAdcsvgfaqgtlggkggqiyvvtdssdsdpanptpgtlrhaviqtEPIWITFASNMLIKLKHELIINSYktidgrganveitgnGCLTLQYVSHVIIHNvhihhckpsgntmiasspthvgyrgksdgdgisifgsqkiwvdhcslsyctdglidaimgstgitisnnyfsHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQrmprcrrgyihvvnndftSWEMYAiggsanptinsqgnrytappddnakEVTKRVetdesewagwnwrtegdvmvngaffvpsgaglstqyakassvepksaaLIDQLTmnagvfgghrddegegnsypgfsgggsgsggtnrnngdgdffgmifgsgasrlpppspstsIFLSLLIILILYTITNHDAPLSLQLLLL
MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRvetdesewagwnwrtegDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRDDEGEGNSYPGFSGGGSGSGGTNRNNGDGDFFGMIFGSGASRLPPPSPSTSIFLSLLIILILYTITNHDAPLSLQLLLL
MLLNTcilleclfflifsssATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYvshviihnvhihhCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRDDEgegnsypgfsgggsgsggtnrnngdgDFFGMIFGSGASRlpppspstsiflslliililYTITNHDAPLSLQLLLL
**LNTCILLECLFFLIFSSSATISSLNLTL*****************VNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVT**************LRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGS********************************EWAGWNWRTEGDVMVNGAFFVPSGAGLSTQY************LIDQLTMNAGV***********************************FFGMIF**************SIFLSLLIILILYTITNHDAPLSLQLL**
***NTCILLECLFFLIFSSSATISSLNLT****HPDPDAVAQ**********************QTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRDDE***************************FFGMIFGS***********TSIFLSLLIILILYTITNHDAPLSLQLLLL
MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPD**************SEWAGWNWRTEGDVMVNGAFFVPSGAGL************KSAALIDQLTMNAGVFGGHRDDEGEGNSYPGFSGGGSGSGGTNRNNGDGDFFGMIFGSGASRLPPPSPSTSIFLSLLIILILYTITNHDAPLSLQLLLL
*LLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSG***********S****S*A**DQLT****VFGG*********S****************NNGDGDFFGMIFGSGASRLPPPSPSTSIFLSLLIILILYTITNHDAPLSLQLLLL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRDDEGEGNSYPGFSGGGSGSGGTNRNNGDGDFFGMIFGSGASRLPPPSPSTSIFLSLLIILILYTITNHDAPLSLQLLLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query491 2.2.26 [Sep-21-2011]
Q93Z04501 Probable pectate lyase 13 no no 0.881 0.864 0.657 1e-176
Q9SCP2483 Probable pectate lyase 12 no no 0.885 0.900 0.661 1e-165
Q944R1470 Probable pectate lyase 15 no no 0.761 0.795 0.627 1e-148
Q940Q1431 Probable pectate lyase 1 no no 0.824 0.939 0.588 1e-141
Q93Z25432 Probable pectate lyase 22 no no 0.739 0.840 0.626 1e-140
Q9FXD8408 Probable pectate lyase 5 no no 0.751 0.904 0.632 1e-138
Q9M8Z8416 Probable pectate lyase 8 no no 0.814 0.961 0.580 1e-138
Q9LRM5452 Probable pectate lyase 9 no no 0.802 0.871 0.564 1e-135
Q9C5M8408 Probable pectate lyase 18 no no 0.800 0.963 0.593 1e-133
Q9LJ42440 Probable pectate lyase 10 no no 0.763 0.852 0.591 1e-132
>sp|Q93Z04|PLY13_ARATH Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1 Back     alignment and function desciption
 Score =  620 bits (1598), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 315/479 (65%), Positives = 367/479 (76%), Gaps = 46/479 (9%)

Query: 26  LNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQ-----------ALAINAQCQTGNPIDDCW 74
           LNLTLPHQHP PD+VA  V R VN SL+RRQ           + + ++ C+TGNPIDDCW
Sbjct: 26  LNLTLPHQHPSPDSVALHVIRSVNESLARRQLSSPSSSSSSSSSSSSSSCRTGNPIDDCW 85

Query: 75  HC-DPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTE 133
            C D +W+ NRQRLADCS+GF  GTLGGK G+IYVVTDSSD++P NPTPGTLR+ VIQ E
Sbjct: 86  RCSDADWSTNRQRLADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEE 145

Query: 134 PIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCK 193
           P+WI F+SNMLI+LK ELIINSYKT+DGRG+ V ITGNGCLTLQYV H+IIHN+HI+ CK
Sbjct: 146 PLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCK 205

Query: 194 PSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253
           PS              RG+SDGDGISIFGSQKIWVDHCS+S+CTDGLIDA+MGST ITIS
Sbjct: 206 PSAG---------FEKRGRSDGDGISIFGSQKIWVDHCSMSHCTDGLIDAVMGSTAITIS 256

Query: 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSW 313
           NNYF+HH+EVMLLGH+D YA D GMQVTIAFNHFG  LVQRMPRCRRGYIHVVNNDFT W
Sbjct: 257 NNYFTHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEW 316

Query: 314 EMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVET-DESEWAGWNWRTEGDVMVNGAF 372
           +MYAIGGS NPTINSQGNRY+AP D +AKEVTKRV++ D+ EW+ WNWRTEGD+M NGAF
Sbjct: 317 KMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSKDDGEWSNWNWRTEGDLMENGAF 376

Query: 373 FVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRDDEGE-GNSYPGFSGGGSGS 431
           FV SG G+S+ Y+KASSV+PK+A+L+DQLT NAGVFGG RDD+G+ GNSY  + G G G 
Sbjct: 377 FVASGEGMSSMYSKASSVDPKAASLVDQLTRNAGVFGGPRDDQGQSGNSYSPYGGDGGGG 436

Query: 432 --------------GGTNR-----NNGDGDFFGMIFGSGASRLPPPSPSTSIFLSLLII 471
                         GGT R     +  D + F MIFGS A    P  P  ++  SLL+I
Sbjct: 437 GSSGGSSGGGMDVMGGTTRGSSSSSGDDSNVFQMIFGSDA----PSRPRLTLLFSLLMI 491
Susceptibility factor required for infection by most powdery mildews, but not by unrelated pathogens. Exact function not known, but clearly affects cell wall composition.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
315272010496 pectate lyase-like protein 1 [Vitis vini 0.971 0.961 0.732 0.0
225448952496 PREDICTED: probable pectate lyase 12 [Vi 0.971 0.961 0.73 0.0
255586803503 Pectate lyase precursor, putative [Ricin 0.900 0.878 0.778 0.0
356575512502 PREDICTED: probable pectate lyase 12-lik 0.977 0.956 0.694 0.0
224113127415 predicted protein [Populus trichocarpa] 0.826 0.978 0.808 0.0
356534388 676 PREDICTED: probable pectate lyase 12-lik 0.983 0.714 0.679 0.0
42567636518 pectate lyase family protein [Arabidopsi 0.959 0.909 0.659 0.0
449465310489 PREDICTED: probable pectate lyase 12-lik 0.949 0.952 0.665 1e-180
449449503411 PREDICTED: probable pectate lyase 13-lik 0.775 0.927 0.765 1e-180
297816788490 hypothetical protein ARALYDRAFT_485907 [ 0.924 0.926 0.652 1e-177
>gi|315272010|gb|ADU02586.1| pectate lyase-like protein 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/500 (73%), Positives = 402/500 (80%), Gaps = 23/500 (4%)

Query: 1   MLLNTCILLECLFFLIFSSSATISSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAI 60
           ML NTCILL CL   +        +LNLTLPHQHP+P+ V  +VQRR+NVS+SRRQ L++
Sbjct: 1   MLPNTCILLLCLLCSLSPLIRATLNLNLTLPHQHPNPEVVVDEVQRRLNVSISRRQVLSV 60

Query: 61  N----AQCQTGNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSD 116
                + C TGNP+DDCW CDPNW  NRQRLADC +GF Q  +GGKGGQ YVVTDSSD D
Sbjct: 61  QENDGSSCLTGNPVDDCWRCDPNWQNNRQRLADCGIGFGQDAMGGKGGQFYVVTDSSDED 120

Query: 117 PANPTPGTLRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTL 176
           P NP PGTLRHAVIQT+P+WITF++NMLIKLK+ELI+NS+KTIDGRGANV ITG GC+TL
Sbjct: 121 PINPAPGTLRHAVIQTQPLWITFSTNMLIKLKYELIVNSFKTIDGRGANVHITGRGCMTL 180

Query: 177 QYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC 236
           QYVS+VIIH VH+HHC PSGN  I SSPTHVG+RGKSDGDGISIFGS+KIW+DHCSLSYC
Sbjct: 181 QYVSNVIIHGVHVHHCVPSGNADIRSSPTHVGWRGKSDGDGISIFGSRKIWIDHCSLSYC 240

Query: 237 TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMP 296
            DGLIDAIMGSTGITISNNYFSHH+EVMLLGH+DKY+ D GMQVTIAFNHFG  LVQRMP
Sbjct: 241 RDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDKYSPDSGMQVTIAFNHFGEGLVQRMP 300

Query: 297 RCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWA 356
           RCRRGYIHVVNNDFT WEMYAIGGSANPTINSQGNRYTAP D NAKEVTKRVETDE +WA
Sbjct: 301 RCRRGYIHVVNNDFTRWEMYAIGGSANPTINSQGNRYTAPGDINAKEVTKRVETDEEDWA 360

Query: 357 GWNWRTEGDVMVNGAFFVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFGGHRDDEG 416
            WNWRTEGDVMVNGAFFVPSG GLSTQYAKASSVEPKSAALI QLTMNAG   G RDD  
Sbjct: 361 EWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIQQLTMNAGALSGSRDDS- 419

Query: 417 EGNSYP----------GFSGGGSGSGGTNRNNGDGDFFGMIFGSGASR--LPPPSPSTSI 464
            G SYP            + GG GS      + D D+FGMIFGSG+     PPPS + S+
Sbjct: 420 MGLSYPGFSSGGTSSSISNNGGHGS------SDDPDYFGMIFGSGSGSGAPPPPSVTISM 473

Query: 465 FLSLLIILILYTITNHDAPL 484
           F SLLIILILY   NH   L
Sbjct: 474 FFSLLIILILYVTINHGGVL 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448952|ref|XP_002268818.1| PREDICTED: probable pectate lyase 12 [Vitis vinifera] gi|296085972|emb|CBI31413.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255586803|ref|XP_002534016.1| Pectate lyase precursor, putative [Ricinus communis] gi|223525981|gb|EEF28369.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356575512|ref|XP_003555884.1| PREDICTED: probable pectate lyase 12-like [Glycine max] Back     alignment and taxonomy information
>gi|224113127|ref|XP_002316399.1| predicted protein [Populus trichocarpa] gi|222865439|gb|EEF02570.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356534388|ref|XP_003535737.1| PREDICTED: probable pectate lyase 12-like [Glycine max] Back     alignment and taxonomy information
>gi|42567636|ref|NP_196051.2| pectate lyase family protein [Arabidopsis thaliana] gi|332003342|gb|AED90725.1| pectate lyase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449465310|ref|XP_004150371.1| PREDICTED: probable pectate lyase 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449503|ref|XP_004142504.1| PREDICTED: probable pectate lyase 13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297816788|ref|XP_002876277.1| hypothetical protein ARALYDRAFT_485907 [Arabidopsis lyrata subsp. lyrata] gi|297322115|gb|EFH52536.1| hypothetical protein ARALYDRAFT_485907 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
TAIR|locus:2179949518 AT5G04310 [Arabidopsis thalian 0.786 0.745 0.722 1.1e-160
TAIR|locus:2082667501 PMR6 "powdery mildew resistant 0.775 0.760 0.697 7.4e-153
TAIR|locus:2101998483 AT3G53190 [Arabidopsis thalian 0.796 0.809 0.688 4.8e-149
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.761 0.795 0.609 1e-130
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.761 0.867 0.603 9.3e-130
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.747 0.899 0.617 6.6e-129
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.755 0.909 0.599 1.4e-128
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.784 0.891 0.585 5.9e-128
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.759 0.896 0.596 2.9e-126
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.771 0.908 0.577 2.4e-124
TAIR|locus:2179949 AT5G04310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1565 (556.0 bits), Expect = 1.1e-160, P = 1.1e-160
 Identities = 287/397 (72%), Positives = 325/397 (81%)

Query:    24 SSLNLTLPHQHPDPDAVAQDVQRRVNVSLSRRQALAINAQ-----------CQTGNPIDD 72
             S  NL+LPHQHP P+ V  +VQR++N SLSRRQ L                C TGNPIDD
Sbjct:    40 SIFNLSLPHQHPFPEHVVLNVQRKLNDSLSRRQLLTYQQDDGTTASSPIPSCITGNPIDD 99

Query:    73 CWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQT 132
             CW CDPNW+ANRQRLADCS+GF QGTLGGKGGQ Y+VTDSSD+D ANP PGTLRHAVIQ 
Sbjct:   100 CWRCDPNWSANRQRLADCSIGFGQGTLGGKGGQFYLVTDSSDNDAANPIPGTLRHAVIQP 159

Query:   133 EPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYXXXXXXXXXXXXXC 192
             EP+WI F+S+M IKLKHELII SYKTIDGRG N++ITG+GCLT+Q              C
Sbjct:   160 EPLWIIFSSDMGIKLKHELIIGSYKTIDGRGTNIQITGHGCLTIQQVSHVIIHNVHIHHC 219

Query:   193 KPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITI 252
             KPSGNT++ASSPTHVG+RG SDGDGIS+  S  IWVDHCSL YC DGLID I+ ST +TI
Sbjct:   220 KPSGNTLVASSPTHVGFRGVSDGDGISVSASHHIWVDHCSLGYCADGLIDVILASTAVTI 279

Query:   253 SNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTS 312
             SNNYFSHH+EVMLLGH+D+Y  D GMQVTIAFNHFG  LVQRMPRCR GYIHVVNNDFT+
Sbjct:   280 SNNYFSHHDEVMLLGHDDRYTADKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTA 339

Query:   313 WEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAF 372
             WEMYAIGGSA+PTINSQGNRYTAP D NAKEVTKRV+++E  W+GWNWRTEGDVMVNGAF
Sbjct:   340 WEMYAIGGSASPTINSQGNRYTAPIDPNAKEVTKRVDSNEKHWSGWNWRTEGDVMVNGAF 399

Query:   373 FVPSGAGLSTQYAKASSVEPKSAALIDQLTMNAGVFG 409
             FVPSG G+S  YA+A+SV+PK+AA+IDQLT+NAGVFG
Sbjct:   400 FVPSGDGVSPAYARATSVQPKAAAIIDQLTVNAGVFG 436
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030570 "pectate lyase activity" evidence=ISS
GO:0031225 "anchored to membrane" evidence=TAS
TAIR|locus:2082667 PMR6 "powdery mildew resistant 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101998 AT3G53190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P40973PLY_LILLO4, ., 2, ., 2, ., 20.50110.80850.9147N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.2LOW CONFIDENCE prediction!
4th Layer4.2.2.20.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT5G04310
pectate lyase family protein; pectate lyase family protein; FUNCTIONS IN- pectate lyase activity; INVOLVED IN- biological_process unknown; LOCATED IN- anchored to membrane; EXPRESSED IN- 14 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Pectin lyase fold/virulence factor (InterPro-IPR011050), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold (InterPro-IPR012334); BEST Arabidopsis thaliana protein match is- PMR6 (powdery mildew resistant 6); lyase/ pectate lyase (TAIR-AT3G54920.1); Has 988 Blast hits to [...] (518 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT2G45220
pectinesterase family protein; pectinesterase family protein; FUNCTIONS IN- enzyme inhibitor ac [...] (511 aa)
     •• 0.909
AT5G49180
pectinesterase family protein; Encodes a putative pectin methylesterase. The gene is preferenti [...] (571 aa)
     •  0.899
AT5G19730
pectinesterase family protein; pectinesterase family protein; FUNCTIONS IN- pectinesterase acti [...] (383 aa)
     •  0.899
AT5G17200
glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; glycoside [...] (421 aa)
     •  0.899
AT5G14650
polygalacturonase, putative / pectinase, putative; polygalacturonase, putative / pectinase, put [...] (435 aa)
     •  0.899
AT5G04970
pectinesterase, putative; pectinesterase, putative; FUNCTIONS IN- enzyme inhibitor activity, pe [...] (624 aa)
     •  0.899
PME44
enzyme inhibitor/ pectinesterase; enzyme inhibitor/ pectinesterase; FUNCTIONS IN- enzyme inhibi [...] (525 aa)
     •  0.899
AT3G59850
polygalacturonase, putative / pectinase, putative; polygalacturonase, putative / pectinase, put [...] (388 aa)
     •  0.899
ADPG1
ADPG1; polygalacturonase; Encodes ADPG1, a polygalacturonase protein involved in silique and an [...] (431 aa)
     •  0.899
AT3G43270
pectinesterase family protein; pectinesterase family protein; FUNCTIONS IN- enzyme inhibitor ac [...] (527 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
smart00656190 smart00656, Amb_all, Amb_all domain 3e-77
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 6e-67
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 5e-29
COG0484 371 COG0484, DnaJ, DnaJ-class molecular chaperone with 0.004
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  239 bits (613), Expect = 3e-77
 Identities = 105/207 (50%), Positives = 125/207 (60%), Gaps = 28/207 (13%)

Query: 142 NMLIKLK--HELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTM 199
           ++ I L     +IINS KTIDGRG+ VEI G G LT++ VS+VII N+ IH  KP     
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKG-GGLTIKSVSNVIIRNLTIHDPKPVY--- 56

Query: 200 IASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCT---------DGLIDAIMGSTGI 250
                        SDGD ISI GS  +W+DH SLS CT         DGLID   GST +
Sbjct: 57  ------------GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 251 TISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDF 310
           TISNNYF +H +VMLLGH+D    D  M+VTIA N+FG  L QR PR R GY+HV NN +
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 311 TSWEMYAIGGSANPTINSQGNRYTAPP 337
           T W  YAIGG    TI S+GN + AP 
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 491
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.84
PLN02218431 polygalacturonase ADPG 98.28
PLN03003456 Probable polygalacturonase At3g15720 98.28
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.27
PLN02188404 polygalacturonase/glycoside hydrolase family prote 98.16
PLN02155394 polygalacturonase 98.1
PLN02793443 Probable polygalacturonase 98.08
PLN03010409 polygalacturonase 97.97
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.97
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.78
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.76
PLN02218431 polygalacturonase ADPG 97.76
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.66
PLN03010409 polygalacturonase 97.56
PLN03003456 Probable polygalacturonase At3g15720 97.45
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.24
PLN02155394 polygalacturonase 97.24
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.23
PLN02480343 Probable pectinesterase 97.09
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.0
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.99
PLN02793443 Probable polygalacturonase 96.95
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.8
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.77
PLN02197588 pectinesterase 96.68
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 96.55
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.54
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 96.42
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.35
PLN02665366 pectinesterase family protein 96.26
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.24
PLN02304379 probable pectinesterase 96.17
PLN02634359 probable pectinesterase 96.04
PLN02176340 putative pectinesterase 95.96
PLN02682369 pectinesterase family protein 95.64
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.64
PLN02497331 probable pectinesterase 95.55
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.51
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.51
PLN02432293 putative pectinesterase 95.5
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.45
PLN02773317 pectinesterase 95.37
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.34
PLN02217670 probable pectinesterase/pectinesterase inhibitor 95.26
PLN02916502 pectinesterase family protein 95.26
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 95.25
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.23
smart00656190 Amb_all Amb_all domain. 95.22
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.22
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.2
PLN02301548 pectinesterase/pectinesterase inhibitor 95.04
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.03
PLN02484587 probable pectinesterase/pectinesterase inhibitor 95.0
PLN02314586 pectinesterase 94.97
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.97
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.89
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.74
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.54
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.46
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 93.96
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 93.69
PLN02671359 pectinesterase 93.49
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 93.49
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 93.14
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.17
PRK10531422 acyl-CoA thioesterase; Provisional 91.12
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 89.26
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 85.84
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-55  Score=435.66  Aligned_cols=273  Identities=30%  Similarity=0.362  Sum_probs=224.5

Q ss_pred             CCCCCCCCCcEEEECCCCCCCCCCCCchhHHHHHhcCCCeEEEEccCeeEEec------ceEEecCCceEEeecceEEEe
Q 011204           96 QGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLK------HELIINSYKTIDGRGANVEIT  169 (491)
Q Consensus        96 ~~ttGG~gG~vy~VTnl~D~~~~~P~pGsLR~Av~~~~Pr~IvF~~sg~I~L~------~~L~V~SnkTI~G~Ga~v~I~  169 (491)
                      .+||||.+|++++|++.+|          |...+...+|.++|..+.|+|++.      .+|.+.|||||.|.|++.+|.
T Consensus        46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~  115 (345)
T COG3866          46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV  115 (345)
T ss_pred             CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence            4799999999999999887          688888899986666667899987      567889999999999999999


Q ss_pred             cceEEEEeeeccEEEEeeEEEeeccCCCccccCCCCccccCcCCCCCceee-eCCceEEEEeeEeec--------CCCCe
Q 011204          170 GNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISI-FGSQKIWVDHCSLSY--------CTDGL  240 (491)
Q Consensus       170 Ggg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~~~~g~r~~~dgDaIsI-~gs~nVWIDHcS~S~--------~~DGl  240 (491)
                      |++ |+|+.+.|||||||+|++.. +|++               ..|+|+| .+++|||||||+|+.        ..||+
T Consensus       116 g~g-l~i~~a~NVIirNltf~~~~-~~d~---------------~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl  178 (345)
T COG3866         116 GGG-LKIRDAGNVIIRNLTFEGFY-QGDP---------------NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL  178 (345)
T ss_pred             ece-EEEEeCCcEEEEeeEEEeec-cCCC---------------CCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence            998 99999999999999999864 3321               2699999 579999999999999        78999


Q ss_pred             eEeeeCCceEEEEcceeccCCceeeeccCCcccCCCC-eEEEEEeeEecCCCcccCccccCCeEEEEcceEeCCc--ceE
Q 011204          241 IDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWE--MYA  317 (491)
Q Consensus       241 iDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g-~~VTihhN~F~~n~~qR~Pr~R~G~vHvvNN~y~nw~--~ya  317 (491)
                      +|+++++++||||||+|++|+|.+|+|.+|+...|.+ .+||+|||+| +|+.||+||+|||.+||+||||+...  .||
T Consensus       179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a  257 (345)
T COG3866         179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVA  257 (345)
T ss_pred             EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceE
Confidence            9999999999999999999999999999998666656 8999999999 79999999999999999999999654  466


Q ss_pred             eecCCCceEEEeCcEEeCCCCCCCcceeeecccCccccCCCeeeccCceEEeceEeeeCCCC------CCccCCCCCcee
Q 011204          318 IGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAG------LSTQYAKASSVE  391 (491)
Q Consensus       318 iggs~~~~I~segNyF~~~~~~~~k~vt~r~~~~~~~~~~w~w~s~Gd~~~nGa~f~~sg~~------~~~~~~~~~~~~  391 (491)
                      ++-+..++|++|+|||+....+..---+++. +       -.|+.     -+|++|..++..      .+..+...|+|+
T Consensus       258 ~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~-~-------GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Yt  324 (345)
T COG3866         258 ITIGTSAKIYVENNYFENGSEGLGFLDTKGT-S-------GYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYT  324 (345)
T ss_pred             EeeccceEEEEecceeccCCCCceeeecCCc-c-------ceEEe-----ccCceecccCCcccccCCccCCCCCCcccc
Confidence            6655669999999999997655322112221 0       11221     345565554432      344677888999


Q ss_pred             cCChhhH-HHHHhcccCcc
Q 011204          392 PKSAALI-DQLTMNAGVFG  409 (491)
Q Consensus       392 ~~~~~~v-~~lt~~AG~~~  409 (491)
                      +.|++.| +.||++||+-+
T Consensus       325 vd~~~dVks~Vt~yAGaGk  343 (345)
T COG3866         325 VDPPEDVKSFVTNYAGAGK  343 (345)
T ss_pred             cCChHHhhhhhhcccccee
Confidence            9998888 89999999654

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 2e-86
3zsc_A340 Catalytic Function And Substrate Recognition Of The 5e-14
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 4e-13
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 4e-12
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 2e-10
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 3e-10
3krg_A399 Structural Insights Into Substrate Specificity And 6e-10
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 9e-10
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 2e-09
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 8e-08
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 2e-07
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 9e-07
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 9e-07
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 6e-06
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  316 bits (809), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/350 (48%), Positives = 218/350 (62%), Gaps = 17/350 (4%)
Query: 68  NPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRH 127
           NPID CW  D NW  NR +LADC+VGF   T+GGKGG  Y VT S+D +P NPTPGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 128 AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLTLQYXXXXXXX 185
              + + +WI F+ NM IKLK  L +  +KTIDGRGA+V + GNG  CL ++        
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHL-GNGGPCLFMRKVSHVILH 119
Query: 186 XXXXXXCKPS--GNTMIASS----PTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDG 239
                 C  S  G+ +++ S    P H       DGD I++      W+DH SLS C+DG
Sbjct: 120 SLHIHGCNTSVLGDVLVSESIGVEPVHA-----QDGDAITMRNVTNAWIDHNSLSDCSDG 174
Query: 240 LIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR 299
           LID  +GSTGITISNN+F +H++VMLLGH+D Y  D  M+VT+AFN FG    QRMPR R
Sbjct: 175 LIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRAR 234
Query: 300 RGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDE-SEWAGW 358
            G +HV NN++  W +YAIGGS+NPTI S+GN +TAP +   KEVTKR+  +  S  A W
Sbjct: 235 YGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANW 294
Query: 359 NWRTEGDVMVNGAFFVPSGAGLSTQ-YAKASSVEPKSAALIDQLTMNAGV 407
            WR+  D  +NGA+FV SG    T  Y    + + ++     QLT NAGV
Sbjct: 295 VWRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGV 344
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-134
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 5e-90
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 2e-87
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 2e-81
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 4e-78
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 4e-68
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 7e-68
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 3e-66
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 7e-65
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 4e-63
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 5e-58
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  390 bits (1003), Expect = e-134
 Identities = 173/344 (50%), Positives = 223/344 (64%), Gaps = 5/344 (1%)

Query: 68  NPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRH 127
           NPID CW  D NW  NR +LADC+VGF   T+GGKGG  Y VT + D +P NPTPGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 128 AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG-CLTLQYVSHVIIHN 186
              + + +WI F+ NM IKLK  L +  +KTIDGRGA+V +   G CL ++ VSHVI+H+
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 187 VHIHHCKPSGNTMIASSPT-HVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIM 245
           +HIH C  S    +  S +  V      DGD I++      W+DH SLS C+DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 246 GSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHV 305
           GSTGITISNN+F +H++VMLLGH+D Y  D  M+VT+AFN FG    QRMPR R G +HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 306 VNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETD-ESEWAGWNWRTEG 364
            NN++  W +YAIGGS+NPTI S+GN +TAP +   KEVTKR+  +  S  A W WR+  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 365 DVMVNGAFFVPSGAGLSTQ-YAKASSVEPKSAALIDQLTMNAGV 407
           D  +NGA+FV SG    T  Y    + + ++     QLT NAGV
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGV 344
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.84
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.79
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.37
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.2
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.19
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.17
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.16
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.15
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.12
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.09
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.05
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.01
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 98.0
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.91
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.89
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.87
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.87
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.81
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.79
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.76
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.69
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.64
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.63
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.62
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.6
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.45
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.37
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.35
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 97.28
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.2
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.17
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.07
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.03
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.99
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.97
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.87
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.86
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.57
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.32
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 96.31
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.28
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.09
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 95.55
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 95.11
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 95.11
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.04
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.89
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 94.88
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 94.21
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 93.82
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 93.64
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 93.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 92.83
2inu_A410 Insulin fructotransferase; right-handed parallel b 92.29
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 91.93
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 90.19
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 82.08
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 81.72
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=5.2e-98  Score=766.71  Aligned_cols=342  Identities=50%  Similarity=0.874  Sum_probs=323.9

Q ss_pred             CCccccccccCcchhhhhhccccCCCCCCCCCCCCCCCcEEEECCCCCCCCCCCCchhHHHHHhcCCCeEEEEccCeeEE
Q 011204           67 GNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIK  146 (491)
Q Consensus        67 gnpid~cwr~~~~wa~~~~~LA~~a~GfG~~ttGG~gG~vy~VTnl~D~~~~~P~pGsLR~Av~~~~Pr~IvF~~sg~I~  146 (491)
                      +||||+||||+++|+.+||+||.||+|||++||||+||++|+||+++| ++++|+|||||+|+++++|+||+|+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999876 5899999999999999999999999999999


Q ss_pred             ecceEEecCCceEEeecceEEEec-ceEEEEeeeccEEEEeeEEEeeccCCCccc-cCCCCccccCcCCCCCceeeeCCc
Q 011204          147 LKHELIINSYKTIDGRGANVEITG-NGCLTLQYVSHVIIHNVHIHHCKPSGNTMI-ASSPTHVGYRGKSDGDGISIFGSQ  224 (491)
Q Consensus       147 L~~~L~V~SnkTI~G~Ga~v~I~G-gg~i~i~~a~NVIIrnL~Ir~~~~~g~~~v-~~s~~~~g~r~~~dgDaIsI~gs~  224 (491)
                      |+++|.|+|||||+|||++++|.| +.+|++++++|||||||+|+++.|.++..+ ++++.|+|++...++|+|+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999998 446999999999999999999988776666 888888898888999999999999


Q ss_pred             eEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCCcccCccccCCeEE
Q 011204          225 KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIH  304 (491)
Q Consensus       225 nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~Pr~R~G~vH  304 (491)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|++..|..++||||||+|++++.+|+||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999998877777999999999976899999999999999


Q ss_pred             EEcceEeCCcceEeecCCCceEEEeCcEEeCCCCCCCcceeeecccC-ccccCCCeeeccCceEEeceEeeeCCCCCCc-
Q 011204          305 VVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETD-ESEWAGWNWRTEGDVMVNGAFFVPSGAGLST-  382 (491)
Q Consensus       305 vvNN~y~nw~~yaiggs~~~~I~segNyF~~~~~~~~k~vt~r~~~~-~~~~~~w~w~s~Gd~~~nGa~f~~sg~~~~~-  382 (491)
                      ++||||++|.+|++++++++++++|+|||+++++|..|+|+||++++ +.+|++|+|+++||+|+||++|.+||.+... 
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999999899999999877 6789999999999999999999999976544 


Q ss_pred             cCCCCCceecCChhhHHHHHhcccCcc
Q 011204          383 QYAKASSVEPKSAALIDQLTMNAGVFG  409 (491)
Q Consensus       383 ~~~~~~~~~~~~~~~v~~lt~~AG~~~  409 (491)
                      +|.++|+++++|+++|++||++||+|.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence            599999999999999999999999984
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 491
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-137
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 3e-87
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-66
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 3e-63
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 4e-58
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 5e-41
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  398 bits (1023), Expect = e-137
 Identities = 173/344 (50%), Positives = 222/344 (64%), Gaps = 5/344 (1%)

Query: 68  NPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRH 127
           NPID CW  D NW  NR +LADC+VGF   T+GGKGG  Y VT + D +P NPTPGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 128 AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG-CLTLQYVSHVIIHN 186
              + + +WI F+ NM IKLK  L +  +KTIDGRGA+V +   G CL ++ VSHVI+H+
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 187 VHIHHCKPSGNTMIASSP-THVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIM 245
           +HIH C  S    +  S    V      DGD I++      W+DH SLS C+DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 246 GSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHV 305
           GSTGITISNN+F +H++VMLLGH+D Y  D  M+VT+AFN FG    QRMPR R G +HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 306 VNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETD-ESEWAGWNWRTEG 364
            NN++  W +YAIGGS+NPTI S+GN +TAP +   KEVTKR+  +  S  A W WR+  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 365 DVMVNGAFFVPSGAGLSTQ-YAKASSVEPKSAALIDQLTMNAGV 407
           D  +NGA+FV SG    T  Y    + + ++     QLT NAGV
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGV 344
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.64
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 98.19
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 98.18
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.05
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 98.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.85
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.77
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.71
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.25
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.99
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.76
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.35
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 96.23
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.11
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.07
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.89
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.77
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 95.76
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 95.34
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.33
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.99
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 94.75
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.43
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 94.38
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 94.04
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 93.95
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 93.91
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 93.73
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=9e-92  Score=717.61  Aligned_cols=342  Identities=50%  Similarity=0.870  Sum_probs=308.8

Q ss_pred             CCccccccccCcchhhhhhccccCCCCCCCCCCCCCCCcEEEECCCCCCCCCCCCchhHHHHHhcCCCeEEEEccCeeEE
Q 011204           67 GNPIDDCWHCDPNWAANRQRLADCSVGFAQGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIK  146 (491)
Q Consensus        67 gnpid~cwr~~~~wa~~~~~LA~~a~GfG~~ttGG~gG~vy~VTnl~D~~~~~P~pGsLR~Av~~~~Pr~IvF~~sg~I~  146 (491)
                      .||||+||||+|+|+++||+||+||+|||++||||+||+||+|||++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            489999999999999999999999999999999999999999999987 5799999999999999999999999999999


Q ss_pred             ecceEEecCCceEEeecceEEEecc-eEEEEeeeccEEEEeeEEEeeccCCCccccCCC-CccccCcCCCCCceeeeCCc
Q 011204          147 LKHELIINSYKTIDGRGANVEITGN-GCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSP-THVGYRGKSDGDGISIFGSQ  224 (491)
Q Consensus       147 L~~~L~V~SnkTI~G~Ga~v~I~Gg-g~i~i~~a~NVIIrnL~Ir~~~~~g~~~v~~s~-~~~g~r~~~dgDaIsI~gs~  224 (491)
                      |+++|.|+|||||+|||++++|.+. .+|++++++|||||||+||++.+.....+...+ .+.+.+...++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            9999999999999999999999863 358899999999999999997654333221111 11222346789999999999


Q ss_pred             eEEEEeeEeecCCCCeeEeeeCCceEEEEcceeccCCceeeeccCCcccCCCCeEEEEEeeEecCCCcccCccccCCeEE
Q 011204          225 KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIH  304 (491)
Q Consensus       225 nVWIDHcS~S~~~DGliDv~~gS~~ITISnn~f~~h~k~mL~G~sds~~~D~g~~VTihhN~F~~n~~qR~Pr~R~G~vH  304 (491)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|++|+|+++....+.+++||||||+|.++..+|+|++|+|++|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999988776666999999999998889999999999999


Q ss_pred             EEcceEeCCcceEeecCCCceEEEeCcEEeCCCCCCCcceeeecccC-ccccCCCeeeccCceEEeceEeeeCCCCC-Cc
Q 011204          305 VVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPDDNAKEVTKRVETD-ESEWAGWNWRTEGDVMVNGAFFVPSGAGL-ST  382 (491)
Q Consensus       305 vvNN~y~nw~~yaiggs~~~~I~segNyF~~~~~~~~k~vt~r~~~~-~~~~~~w~w~s~Gd~~~nGa~f~~sg~~~-~~  382 (491)
                      ++||||++|..|++++++++++++|+|||++++.|..|+++++.... ...|++|.|++++|+++||++|.+++... ..
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            99999999999999999999999999999999999999999887653 34689999999999999999999988654 45


Q ss_pred             cCCCCCceecCChhhHHHHHhcccCcc
Q 011204          383 QYAKASSVEPKSAALIDQLTMNAGVFG  409 (491)
Q Consensus       383 ~~~~~~~~~~~~~~~v~~lt~~AG~~~  409 (491)
                      .|.++|++++.|++.|++|+++||||.
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence            688999999999999999999999984
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure