Citrus Sinensis ID: 011215

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
MTKKRKNNGSADEDRHVKSVKVVEQSSPSPPRLGFENPLLPLANTYDDDDEEEEYGGRGDSGAKVGQNGRTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEcccccccHHHHcccccccEEEEcccccEEEccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccccccEEcccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccccEEEEcccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEEEccccccc
cccEEEcccccccccccHHcEEcccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccHccccccHcccccccccccccccccccHcccccHHHEEEEEEcccEEEEEEEEccEEccccccccEEEEEEccccEEEEEEcccEEEEcccccEEEcccHHHccEccccccccccHHHHHHHHHHccccHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHccccccccEEccccccEEEEEEEcccccccHHHHHHHHHHccccccccccEEEEEccEEEEEcccccccccccHHHHcccccccHHHHHHHccccccEEEEcccccEEEEEEEccccEEEEEEEEEccccEEEEcccEEEEcccccccccHccccccccccccccEEEEEEEEEEEcccccccEEEEEEEccccccc
mtkkrknngsadedrhvKSVKVVeqsspspprlgfenpllplantyddddeeeeyggrgdsgakvgqngrtgedddedkdededdlangygqgqrsrlvevrrdcpyldtvnrqvldFDFEKFCSvslsnlnvYACLVcgkyyqgrgqkshaythsleAGHHVYINLrtekvyclpdgyeindpsledirhvglnniketdfvNVTIQSLmrvtplrnfflipenyrhcksplvhrfgdLTRKIWHArnfkgqvspHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEvvkeipkntisgndqntekgsdggddhdnittetsrmpflmlgldlpppplfkdvmekniipqvplfnilkkfdgetvteVVRPHVARMRYRVTRLPKYMILHMRRFtknnffveknptlvnfpvknlelkdyiplptpkeneklrsKYDLIANIVhdgkpeggFYRVFVQRKSEELW
mtkkrknngsadedrhvksvkvveqsspspprlgfenpllpLANTYDDDDEEEEyggrgdsgakvgqngrtgedddedkdededdlangygqgqrsrlvevrrdcPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKeipkntisgndqntekgsdggddhDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLfnilkkfdgetvtevvrphvarmryrvtrlpkymILHMRRFTKnnffveknptlvnfpvknlelkdYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW
MTKKRKNNGSADEDRHVKSVKVVEQSSPSPPRLGFENPLLPLANTYddddeeeeYGGRGDSGAKVGQNGRTGedddedkdededdLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRmpflmlgldlpppplfKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW
************************************************************************************************RLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQG******************YINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEI********************************PFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPT******LRSKYDLIANIVHDGKPEGGFYRVFV********
************************************************************************************************************DTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK**SIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPP******VMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIP**********RSKYDLIANIVHDGKPEGGFYRVFVQRKS**L*
******************************PRLGFENPLLPLANTYDD**************************************ANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW
******************************************************************************************************RDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKS****
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MTKKRKNNGSADEDRHVKSVKVVEQSSPSPPRLGFENPLLPLANTYDDDDEEEEYGGRGDSGAKVGQNGRTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query491 2.2.26 [Sep-21-2011]
Q3TIX9564 U4/U6.U5 tri-snRNP-associ yes no 0.832 0.725 0.459 1e-106
Q53GS9565 U4/U6.U5 tri-snRNP-associ yes no 0.832 0.723 0.459 1e-106
Q5R761565 U4/U6.U5 tri-snRNP-associ yes no 0.832 0.723 0.459 1e-105
Q9USR2502 Probable mRNA-splicing pr yes no 0.757 0.741 0.406 3e-85
P43589448 Pre-mRNA-splicing factor yes no 0.647 0.709 0.291 3e-36
Q91W36520 Ubiquitin carboxyl-termin no no 0.737 0.696 0.243 5e-14
Q9Y6I4520 Ubiquitin carboxyl-termin no no 0.700 0.661 0.245 6e-14
Q9SUX7184 Putative F-box protein At no no 0.226 0.603 0.466 1e-12
O57429357 Ubiquitin carboxyl-termin no no 0.570 0.784 0.240 1e-11
O75604605 Ubiquitin carboxyl-termin no no 0.574 0.466 0.232 4e-11
>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2 Back     alignment and function desciption
 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/466 (45%), Positives = 283/466 (60%), Gaps = 57/466 (12%)

Query: 70  RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
           R  E D++ + E E    NG    +  R     R CPYLDT+NR VLDFDFEK CS+SLS
Sbjct: 73  REREADEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISLS 128

Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
           ++N YACLVCGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 129 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 188

Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
            +V                                 GLNNIK  D+ N  +Q+L  V PL
Sbjct: 189 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 248

Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
           RN+FL  +NY++ K P       LV RFG+L RK+W+ RNFK  VSPHE LQAV+  SKK
Sbjct: 249 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 308

Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
            F+I  Q + V+F+SW LN LHS L    KK  +I+ + FQG + +  K++P   +   +
Sbjct: 309 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQGSMRIFTKKLPHPDLPAEE 368

Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387
           +     +   D++     E++   F+ L LDLP  PL+KD  E+ IIPQVPLFNIL KF+
Sbjct: 369 KEQLLHN---DEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFN 422

Query: 388 GETVTE--VVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKD 445
           G T  E    + +  + R+++T+LP Y+I  ++RFTKNNFFVEKNPT+VNFP+ N++L++
Sbjct: 423 GITEKEYKTYKENFLK-RFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLRE 481

Query: 446 YIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
           Y+       ++   + YDLIANIVHDGKP  G YR+ V       W
Sbjct: 482 YLSEEVQAVHKN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKW 525
May play a role in mRNA splicing. It is unsure if the protein really exhibits hydrolase activity. Could be a competitor of ubiquitin C-terminal hydrolases (UCHs).
Mus musculus (taxid: 10090)
>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2 Back     alignment and function description
>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1 Back     alignment and function description
>sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp10 PE=3 SV=1 Back     alignment and function description
>sp|P43589|SAD1_YEAST Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAD1 PE=1 SV=1 Back     alignment and function description
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3 PE=1 SV=2 Back     alignment and function description
>sp|Q9SUX7|FB245_ARATH Putative F-box protein At4g22420 OS=Arabidopsis thaliana GN=At4g22420 PE=4 SV=1 Back     alignment and function description
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2 PE=2 SV=1 Back     alignment and function description
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
147862940566 hypothetical protein VITISV_019937 [Viti 0.993 0.862 0.729 0.0
356546089563 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.916 0.799 0.762 0.0
356534252569 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.904 0.780 0.742 0.0
255559080557 ubiquitin specific protease 39 and snrnp 0.987 0.870 0.712 0.0
449443550550 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.979 0.874 0.722 0.0
449520261550 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.979 0.874 0.720 0.0
357474209544 U4/U6.U5 tri-snRNP-associated protein [M 0.934 0.843 0.718 0.0
224089613557 predicted protein [Populus trichocarpa] 0.981 0.865 0.699 0.0
326495966553 predicted protein [Hordeum vulgare subsp 0.932 0.828 0.726 0.0
357110906546 PREDICTED: U4/U6.U5 tri-snRNP-associated 0.800 0.719 0.800 0.0
>gi|147862940|emb|CAN83206.1| hypothetical protein VITISV_019937 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/539 (72%), Positives = 423/539 (78%), Gaps = 51/539 (9%)

Query: 1   MTKKRKNNGSADEDRH---VKSVKVVEQSSPSPPRLGFENPLLPLANTYDDDDEEEEYGG 57
           M  KR++N   DE R    +K  K +++SSP P  L FEN L  LA+  DDDDE+EE   
Sbjct: 1   MKTKREDNSDEDEGREFPDLKRQKKLDESSPPPASLAFENALHTLASYDDDDDEKEEEEM 60

Query: 58  RGDSGAKVGQNGRTGEDDDEDKDEDEDDLA-------NGYGQGQRSRLVEVRRDCPYLDT 110
           +  SG +  ++ R  E +     E+ DD             Q +RSRLVEVRRDCPYLDT
Sbjct: 61  KEASGLRGREDNRRAERNGHRDGEEYDDDDDDDDDPHQEANQVKRSRLVEVRRDCPYLDT 120

Query: 111 VNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTE 170
           VNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTE
Sbjct: 121 VNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTE 180

Query: 171 KVYCLPDGYEINDPSLEDIRHV---------------------------------GLNNI 197
           KVYCLPDGYEINDPSL+DIRHV                                 GLNNI
Sbjct: 181 KVYCLPDGYEINDPSLDDIRHVLNPRFTREQVDQLDKNKQWSRALDGSDYLPGMVGLNNI 240

Query: 198 KETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPH 257
           KETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFG+LTRKIWHARNFKGQVSPH
Sbjct: 241 KETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGELTRKIWHARNFKGQVSPH 300

Query: 258 EFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKE 317
           EFLQAVMKASKKRFRIG QS+PVEFMSWLLNTLH DLR +KKN+SIIY CFQGELEVVKE
Sbjct: 301 EFLQAVMKASKKRFRIGAQSDPVEFMSWLLNTLHGDLRTSKKNSSIIYNCFQGELEVVKE 360

Query: 318 IPKNTI-----SGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKN 372
           IP         +G+DQN    +   D+H ++  ET RMPFLMLGLDLPPPPLFKDVMEKN
Sbjct: 361 IPNKGFFEKRENGDDQNK---ATTADEHADVILETCRMPFLMLGLDLPPPPLFKDVMEKN 417

Query: 373 IIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPT 432
           IIPQVPLFNILKKFDGE VTEVVRP +ARMRYRVTRLP+Y+ILHMRRFTKNNFF+EKNPT
Sbjct: 418 IIPQVPLFNILKKFDGELVTEVVRPRIARMRYRVTRLPQYLILHMRRFTKNNFFIEKNPT 477

Query: 433 LVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
           LVNFPVKNLELKDYIPLP PKENEKLRSKYDLIANIVHDGKP  GFYRVFVQRKSEELW
Sbjct: 478 LVNFPVKNLELKDYIPLPAPKENEKLRSKYDLIANIVHDGKPGEGFYRVFVQRKSEELW 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356546089|ref|XP_003541464.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356534252|ref|XP_003535671.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|255559080|ref|XP_002520562.1| ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis] gi|223540222|gb|EEF41795.1| ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449443550|ref|XP_004139540.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520261|ref|XP_004167152.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357474209|ref|XP_003607389.1| U4/U6.U5 tri-snRNP-associated protein [Medicago truncatula] gi|355508444|gb|AES89586.1| U4/U6.U5 tri-snRNP-associated protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224089613|ref|XP_002308779.1| predicted protein [Populus trichocarpa] gi|222854755|gb|EEE92302.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|326495966|dbj|BAJ90605.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|357110906|ref|XP_003557256.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
TAIR|locus:4010713900541 AT4G22285 [Arabidopsis thalian 0.391 0.354 0.626 9.3e-172
TAIR|locus:2127490340 AT4G22410 [Arabidopsis thalian 0.264 0.382 0.846 1.2e-124
DICTYBASE|DDB_G0278929718 usp39 "putative ubiquitin carb 0.588 0.402 0.450 4.5e-105
ZFIN|ZDB-GENE-030131-966497 usp39 "ubiquitin specific pept 0.592 0.585 0.445 2.8e-101
UNIPROTKB|A6QQX8565 USP39 "Uncharacterized protein 0.592 0.515 0.434 3.3e-98
UNIPROTKB|E2QZF6561 USP39 "Uncharacterized protein 0.592 0.518 0.434 3.3e-98
UNIPROTKB|Q53GS9565 USP39 "U4/U6.U5 tri-snRNP-asso 0.592 0.515 0.434 3.3e-98
MGI|MGI:107622564 Usp39 "ubiquitin specific pept 0.592 0.515 0.434 3.3e-98
UNIPROTKB|B9A018536 USP39 "U4/U6.U5 tri-snRNP-asso 0.576 0.527 0.442 6.8e-98
RGD|1308103564 Usp39 "ubiquitin specific pept 0.592 0.515 0.430 8.7e-98
TAIR|locus:4010713900 AT4G22285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 604 (217.7 bits), Expect = 9.3e-172, Sum P(3) = 9.3e-172
 Identities = 124/198 (62%), Positives = 138/198 (69%)

Query:     3 KKRKNNGSADEDRHVKSVKVVEQSSPSPPRLGFENPLLPLANTYXXXXXXXXYG-----G 57
             ++   NG ++E+R VK  +V+E+S   PP LGF NPLLPLANTY                
Sbjct:     4 EREVKNGVSEEEREVKRKRVMERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQKKSQA 63

Query:    58 RGDSGAKVGQNGRTGXXXXXXXXXXXXXLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLD 117
             RG+  AK   NG                     G+G+ SR VEVRRDCPYLDTVNRQVLD
Sbjct:    64 RGNGVAKGEGNGNKVKGEAQEEVDDDEDDDVSKGKGKHSRHVEVRRDCPYLDTVNRQVLD 123

Query:   118 FDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPD 177
             FDFE+FCSVSLSNLNVYACLVCGKY+QGR QKSHAYTHSLEAGHHVYINL TEKVYCLPD
Sbjct:   124 FDFERFCSVSLSNLNVYACLVCGKYFQGRSQKSHAYTHSLEAGHHVYINLLTEKVYCLPD 183

Query:   178 GYEINDPSLEDIRHVGLN 195
              YEINDPSL+DIRHV LN
Sbjct:   184 SYEINDPSLDDIRHV-LN 200
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2127490 AT4G22410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278929 usp39 "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-966 usp39 "ubiquitin specific peptidase 39" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A6QQX8 USP39 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZF6 USP39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q53GS9 USP39 "U4/U6.U5 tri-snRNP-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107622 Usp39 "ubiquitin specific peptidase 39" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B9A018 USP39 "U4/U6.U5 tri-snRNP-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1308103 Usp39 "ubiquitin specific peptidase 39" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.19LOW CONFIDENCE prediction!
3rd Layer3.4.19.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00010886001
SubName- Full=Chromosome undetermined scaffold_292, whole genome shotgun sequence; (513 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028845001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (504 aa)
   •• • 0.729
GSVIVG00031353001
SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (202 aa)
    • • 0.538
GSVIVG00025837001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (1007 aa)
   •• • 0.535
GSVIVG00037110001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (512 aa)
   •  • 0.476
GSVIVG00027571001
RecName- Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.1.2.15; (808 aa)
   •  • 0.452
GSVIVG00024530001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (454 aa)
   •    0.436
GSVIVG00013856001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (98 aa)
   ••   0.436
GSVIVG00005644001
SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_155, whole gen [...] (988 aa)
   ••   0.435
GSVIVG00025475001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (188 aa)
   ••   0.425
GSVIVG00005967001
SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (321 aa)
   •  • 0.424

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 0.0
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 7e-28
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 1e-25
pfam0214863 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas 7e-24
smart0029050 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal H 5e-18
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 5e-15
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 7e-12
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 3e-11
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 2e-10
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 1e-07
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 1e-07
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 8e-07
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 2e-04
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 5e-04
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 0.001
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  587 bits (1515), Expect = 0.0
 Identities = 234/424 (55%), Positives = 287/424 (67%), Gaps = 49/424 (11%)

Query: 106 PYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYI 165
           PYLDT+NR VLDFDFEK CSVSLSNLNVYACLVCGKY+QGRG+ SHAYTHSLE  HHV++
Sbjct: 1   PYLDTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFL 60

Query: 166 NLRTEKVYCLPDGYEINDPSLEDIRH---------------------------------V 192
           NL T K YCLPD YEI D SL+DI++                                 V
Sbjct: 61  NLETLKFYCLPDNYEIIDSSLDDIKYVLNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFV 120

Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HCKSPLVHRFGDLTRKIWHARN 249
           GLNNIK  D+ NV IQ+L  V P+RNFFL+ ENY      KS LV R  +L RKIW+ RN
Sbjct: 121 GLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRN 180

Query: 250 FKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECF 308
           FKG VSPHE LQAV K SKK+F I  QS+PVEF+SWLLNTLH DL  + K N+SII++CF
Sbjct: 181 FKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCF 240

Query: 309 QGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDV 368
           QG++++  +  K          E+GS      D+   +TS  PFL+L LDLPPPPLFKD 
Sbjct: 241 QGKVQIETQKIKPHAE------EEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDG 294

Query: 369 MEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVE 428
            E+NIIPQVPL  +LKK+DG+T TE+        RY ++RLPKY+I H++RF+KNNFF E
Sbjct: 295 NEENIIPQVPLKQLLKKYDGKTETELKDS---LKRYLISRLPKYLIFHIKRFSKNNFFKE 351

Query: 429 KNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKP-EGGFYRVFVQRKS 487
           KNPT+VNFP+KNL+L DY+     K +  L +KY+L+ANIVH+G P E G +RV ++ KS
Sbjct: 352 KNPTIVNFPIKNLDLSDYV--HFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKS 409

Query: 488 EELW 491
              W
Sbjct: 410 TNKW 413

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein Back     alignment and domain information
>gnl|CDD|197632 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 491
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 100.0
KOG0944 763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
COG5207 749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
KOG1873 877 consensus Ubiquitin-specific protease [Posttransla 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.98
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.97
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 99.97
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 99.96
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.96
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.95
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.93
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 99.92
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.92
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.87
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.85
PF0214863 zf-UBP: Zn-finger in ubiquitin-hydrolases and othe 99.66
smart0029050 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like 99.11
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 98.83
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 98.76
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 98.33
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 97.44
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 96.87
PF08715320 Viral_protease: Papain like viral protease; InterP 96.56
PF09416152 UPF1_Zn_bind: RNA helicase (UPF2 interacting domai 86.78
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 86.07
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 85.48
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information 
Probab=100.00  E-value=3.7e-91  Score=737.75  Aligned_cols=375  Identities=62%  Similarity=1.041  Sum_probs=333.4

Q ss_pred             cchhcccccccCCCCCccccccCCCCceEEecccCcccccCCCCChhcccccccCCcEEEEecCcceeecCCceeccCCc
Q 011215          106 PYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPS  185 (491)
Q Consensus       106 ~~l~ti~r~~l~fd~~k~Cs~~ls~~nl~~CL~CG~~~~Gr~~~sha~~H~~~~~H~v~v~l~t~~vyc~~c~~~v~d~~  185 (491)
                      |||+||||++|||||||+|++|+++.|+|+||+||+||||||+++||+.|+.+++||||||++|++||||||+++|.|++
T Consensus         1 ~yl~ti~r~~ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~d~~   80 (440)
T cd02669           1 PYLDTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEIIDSS   80 (440)
T ss_pred             CchhhhhhhhccccccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEEeCcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhc---------------------------------CCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCCC---CC
Q 011215          186 LEDIRHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HC  229 (491)
Q Consensus       186 L~di~~~---------------------------------GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~---~~  229 (491)
                      |++|++.                                 ||+|+|||||||||||+|+|+|+||++|+...+..   ..
T Consensus        81 l~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~  160 (440)
T cd02669          81 LDDIKYVLNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDR  160 (440)
T ss_pred             HHHHHHHhcCCCCHHHHHHhhhccccccccCCCCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCC
Confidence            9988742                                 99999999999999999999999999999644332   24


Q ss_pred             CChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcC-CCCCCCcccCc
Q 011215          230 KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-KKNTSIIYECF  308 (491)
Q Consensus       230 ~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~-~~~~sii~~~F  308 (491)
                      ..+++++|+.|++++|+++.++.+|+|++|+++++..+++.|.++.||||+|||.|||+.||+++++. +...++|+++|
T Consensus       161 ~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F  240 (440)
T cd02669         161 KSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCF  240 (440)
T ss_pred             CcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceecc
Confidence            56899999999999999988889999999999999886788999999999999999999999999753 34678999999


Q ss_pred             eeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEEeecceeeeecCCCCCCcccccccccCCCCCHHHHHhhccc
Q 011215          309 QGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDG  388 (491)
Q Consensus       309 ~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~  388 (491)
                      +|+++++++|..|....      ..+...|..|+...+++.+||++|+|+||..+++++....+.+|+++|++||++|++
T Consensus       241 ~G~l~~~~~c~~~~~~~------~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~ky~~  314 (440)
T cd02669         241 QGKVQIETQKIKPHAEE------EGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKKYDG  314 (440)
T ss_pred             CceEEEEEEeecccccc------cccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHhcCC
Confidence            99999999999886311      011112445565788899999999999999999999888889999999999999998


Q ss_pred             ccceeeccccceEEEEEeccCCceeEEEEeeEeecCceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEE
Q 011215          389 ETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANI  468 (491)
Q Consensus       389 ~~~~ec~~~~~a~k~~~i~~lP~~LiihLkRF~~~~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI  468 (491)
                      +++..   ...++|+++|.+||+||+||||||+++.+..+||++.|+||++.|||++|+..+..  ......+|+|+|||
T Consensus       315 ~~c~~---~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~--~~~~~~~Y~L~avI  389 (440)
T cd02669         315 KTETE---LKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKP--SLNLSTKYNLVANI  389 (440)
T ss_pred             cccee---cccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCcccc--ccCCCceEEEEEEE
Confidence            77544   45678999999999999999999999888889999999999866899999974322  22235789999999


Q ss_pred             EEeccC-CCCcEEEEEEeCCCCCC
Q 011215          469 VHDGKP-EGGFYRVFVQRKSEELW  491 (491)
Q Consensus       469 ~H~G~~-~~GHY~~~vr~~~~~~W  491 (491)
                      +|.|++ ++|||+||+|+..+|+|
T Consensus       390 ~H~G~~~~sGHY~a~v~~~~~~~W  413 (440)
T cd02669         390 VHEGTPQEDGTWRVQLRHKSTNKW  413 (440)
T ss_pred             EEeccCCCCeeEEEEEEcCCCCeE
Confidence            999998 99999999999778999

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 9e-13
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 3e-07
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 3e-07
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 4e-07
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 4e-07
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 4e-07
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 5e-07
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 3e-06
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 4e-06
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 4e-06
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure 
Iteration: 1

 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 138/330 (41%), Gaps = 39/330 (11%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
            GL N+  T F+N  +Q L    PL ++FL  E        N    K  +   + +L ++
Sbjct: 9   CGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 68
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
           +W  R+    V+P  F   V + + + F    Q +  E +++LL+ LH DL   KK   +
Sbjct: 69  MWSGRD--AHVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 125
Query: 304 IYECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRXXXXXX--XXXX 359
             +   G  +  V KE  +N    ND        G      +  E ++            
Sbjct: 126 ELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 185
Query: 360 XXXXXXKD-VMEKNII-PQ------VPLFNILKKFDG-ETVTE--------VVRPHVARM 402
                 KD VME  ++ PQ      V L + ++ F   ET+ E          +   A  
Sbjct: 186 LPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATK 245
Query: 403 RYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSK- 461
           ++ +  LPK +++H++RF+ N ++ +K  T+V FP++ L + +++       N   R   
Sbjct: 246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVC------NLSARPYV 299
Query: 462 YDLIANIVHDGKPEGGFYRVFVQRKSEELW 491
           YDLIA   H G    G Y  + + K    W
Sbjct: 300 YDLIAVSNHYGAMGVGHYTAYAKNKLNGKW 329
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 8e-52
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 3e-33
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 8e-33
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 1e-30
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-28
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 1e-27
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 3e-24
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 7e-21
2uzg_A97 Ubiquitin carboxyl-terminal hydrolase 33; UBL conj 5e-20
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 1e-18
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 8e-18
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 2e-15
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 6e-12
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 1e-07
2ida_A102 Hypothetical protein; zinc binding protein, struct 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
 Score =  187 bits (475), Expect = 8e-52
 Identities = 65/473 (13%), Positives = 143/473 (30%), Gaps = 105/473 (22%)

Query: 100 EVRRDCPY---LDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCG------KYYQGRGQKS 150
           EVR+   +   L  ++           CS      N++  L  G      +Y+ G G  +
Sbjct: 191 EVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNN 250

Query: 151 HAYTHSLEAGHHVYINLRTEK-----VYCLPDGYEINDPSLEDIRH-------------- 191
           HA  H  E G+ + + L T       VY   +   + DPSL +                 
Sbjct: 251 HAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDK 310

Query: 192 ----------------------------------VGLNNIKETDFVNVTIQSLMRVTPLR 217
                                              G+ N+  + ++N  +Q L  +   +
Sbjct: 311 TMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQ 370

Query: 218 NFFL--IPENYRHCKSPLVHRFGDLTRKIWHA----------------------RNFKGQ 253
             ++  + + +++  +     F     K+ H                       +  +  
Sbjct: 371 RKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDG 430

Query: 254 VSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELE 313
           ++P  F   + K     F    Q +  EF   L+N +  + R+++    +     + +++
Sbjct: 431 IAPRMFKALIGK-GHPEFSTNRQQDAQEFFLHLINMVERNCRSSENPNEVFRFLVEEKIK 489

Query: 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNI 373
            +        +   + T++          +    ++   L            K  + + +
Sbjct: 490 CLA-------TEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELV 542

Query: 374 IPQVPLFNILKKFDGETVTEVVR------PHVARMRYRVTRLPKYMILHMRRFT-KNNFF 426
             QVP  + L+ +      +           VA    R    P Y+++ +++FT   ++ 
Sbjct: 543 RAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWV 602

Query: 427 VEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFY 479
            +K    +  P    E  D   L             D+   +V   +P+    
Sbjct: 603 PKKLDVSIEMP----EELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPML 651
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129 Back     alignment and structure
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Length = 102 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.92
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 99.89
2uzg_A97 Ubiquitin carboxyl-terminal hydrolase 33; UBL conj 99.84
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 99.81
2ida_A102 Hypothetical protein; zinc binding protein, struct 99.64
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 99.54
3mp2_A211 Non-structural protein 3; papain-like protease, TG 96.46
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 95.29
2xzl_A 802 ATP-dependent helicase NAM7; hydrolase-RNA complex 81.43
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.5e-67  Score=595.11  Aligned_cols=321  Identities=18%  Similarity=0.266  Sum_probs=271.4

Q ss_pred             CCCCcchhcccccccC---CCCCccccccCCCCceEEecccCcccccC------CCCChhcccccccCCcEEEEecC---
Q 011215          102 RRDCPYLDTVNRQVLD---FDFEKFCSVSLSNLNVYACLVCGKYYQGR------GQKSHAYTHSLEAGHHVYINLRT---  169 (491)
Q Consensus       102 ~~~c~~l~ti~r~~l~---fd~~k~Cs~~ls~~nl~~CL~CG~~~~Gr------~~~sha~~H~~~~~H~v~v~l~t---  169 (491)
                      +..|+|+.+|.+....   ......|+.|++..|+|+||+||+++|||      |+++||+.|+.+++|+|+|+|+|   
T Consensus       193 ~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~  272 (854)
T 3ihp_A          193 RQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP  272 (854)
T ss_dssp             CCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBT
T ss_pred             CCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCC
Confidence            4789999988542211   12235899999999999999999998886      45999999999999999999999   


Q ss_pred             --cceeecCCceeccCCchhhhh------------------------------------------------hcCCcCCCC
Q 011215          170 --EKVYCLPDGYEINDPSLEDIR------------------------------------------------HVGLNNIKE  199 (491)
Q Consensus       170 --~~vyc~~c~~~v~d~~L~di~------------------------------------------------~~GL~NlGN  199 (491)
                        ++||||+|+++|.|+.|++++                                                ++||.|+||
T Consensus       273 ~~~~~~cy~~~~~v~~~~l~~~l~~~gi~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~p~~~~G~~GL~NlGN  352 (854)
T 3ihp_A          273 DGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGN  352 (854)
T ss_dssp             TBCCEEETTTTEECBCTTHHHHHHHTTCCC-----------------------------------CCCSTTCCCBCCCSS
T ss_pred             CCCeEEEccCCCeeeCccHHHHHHHhCcccccccccchhhhhhhhhhccccchhhhhcccCcccccccCCCccceEecCC
Confidence              999999999999999877632                                                129999999


Q ss_pred             cchhHHHHHHHhCCHHHHHHHcCCC------CCCCCCChHHHHHHHHHHHHHcCC------------------CCCCCCC
Q 011215          200 TDFVNVTIQSLMRVTPLRNFFLIPE------NYRHCKSPLVHRFGDLTRKIWHAR------------------NFKGQVS  255 (491)
Q Consensus       200 TCYmNsVLQ~L~~ip~fr~~~l~~~------~~~~~~~~l~~~l~~L~~~l~s~~------------------~fk~~vs  255 (491)
                      |||||||||+|+|+|+||++|+...      .......++.++|++|++.||+++                  .++..|+
T Consensus       353 TCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~is  432 (854)
T 3ihp_A          353 SCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIA  432 (854)
T ss_dssp             CHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------------------CCBC
T ss_pred             ceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccccccccccCCCccC
Confidence            9999999999999999999998421      122345689999999999999865                  3466899


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCC
Q 011215          256 PHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSD  335 (491)
Q Consensus       256 P~~ll~~i~~~s~~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~  335 (491)
                      |.+|+++++.. ++.|.+++||||+|||.+||+.|+++++.    .++|.++|+|++.++++|..|+             
T Consensus       433 P~~f~~~l~~~-~~~F~~~~QQDA~EFl~~LLd~L~~el~~----~s~i~~lF~G~l~s~i~C~~C~-------------  494 (854)
T 3ihp_A          433 PRMFKALIGKG-HPEFSTNRQQDAQEFFLHLINMVERNCRS----SENPNEVFRFLVEEKIKCLATE-------------  494 (854)
T ss_dssp             CHHHHHHHTTT-CTTTTSSSCCBHHHHHHHHHHHHHHTCTT----SCCGGGGTCEEEEEEEEETTTT-------------
T ss_pred             hHHHHHHHhhh-ccccccccccCHHHHHHHHHHHHHHHhcc----cCCchhhcCceEEEEEEecCCC-------------
Confidence            99999999988 79999999999999999999999998854    4679999999999999999997             


Q ss_pred             CCCCCCCCceeEEeecceeeeecCCCCCCcccc------------------cccccCCCCCHHHHHhhccccccee----
Q 011215          336 GGDDHDNITTETSRMPFLMLGLDLPPPPLFKDV------------------MEKNIIPQVPLFNILKKFDGETVTE----  393 (491)
Q Consensus       336 v~~~~~~~~~s~~~e~f~~LsLdlp~~~~~kd~------------------~~~~~~p~vsL~~~L~~f~~~~~~e----  393 (491)
                              .++++.++|+.|+|+||..+.....                  ...++.++++|++||+.|++.+..+    
T Consensus       495 --------~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~y~C  566 (854)
T 3ihp_A          495 --------KVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDDFWS  566 (854)
T ss_dssp             --------EEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEEEEE
T ss_pred             --------CEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeeeeec
Confidence                    8899999999999999975433210                  1123567799999999999877544    


Q ss_pred             --eccccceEEEEEeccCCceeEEEEeeEeec-CceeecCCeeEeccCccccccCCCCC
Q 011215          394 --VVRPHVARMRYRVTRLPKYMILHMRRFTKN-NFFVEKNPTLVNFPVKNLELKDYIPL  449 (491)
Q Consensus       394 --c~~~~~a~k~~~i~~lP~~LiihLkRF~~~-~~~~~K~~~~V~FP~~~LDL~~y~~~  449 (491)
                        |+.++.++|+++|.+||+||+||||||.++ +|...|+++.|.||.. |||++|+..
T Consensus       567 ~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~-LDl~~y~~~  624 (854)
T 3ihp_A          567 TALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEE-LDISQLRGT  624 (854)
T ss_dssp             TTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSE-EECGGGBCC
T ss_pred             cccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCc-EehHHhccC
Confidence              666778999999999999999999999984 5788999999999975 999999763
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Back     alignment and structure
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Back     alignment and structure
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 491
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 6e-28
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 4e-25
d2uzga195 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy 6e-25
d2g45a1113 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h 1e-17
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 3e-15
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-12
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-10
d2idaa1102 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {R 2e-06
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 6e-28
 Identities = 68/317 (21%), Positives = 120/317 (37%), Gaps = 30/317 (9%)

Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC------KSPLVHRFGDLTRKIW 245
            GL N+  T F+N  +Q L     LR++ L     R         + LV  F  L + IW
Sbjct: 4   AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 63

Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIY 305
            +      VSP EF    ++    RF    Q +  EF+ +LL+ LH+++           
Sbjct: 64  TSSP-NDVVSPSEFKT-QIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNP 121

Query: 306 ECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
           E      + E  +++ +  +   D               + +  +            P  
Sbjct: 122 ENLDHLPDDEKGRQMWRKYLEREDSRIGD-----LFVGQLKSSLTCTDCGYCSTVFDPFW 176

Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGETV---------TEVVRPHVARMRYRVTRLPKYMI 414
                + K   P+V L + ++ F  E V                    ++ + R PK ++
Sbjct: 177 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILV 236

Query: 415 LHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKP 474
           LH++RF+++     K  T VNFP+++L+L+++    T        + Y+L A   H G  
Sbjct: 237 LHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNH------AVYNLYAVSNHSGTT 290

Query: 475 EGGFYRVFVQRKSEELW 491
            GG Y  + +      W
Sbjct: 291 MGGHYTAYCRSPGTGEW 307
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d2uzga195 Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H 99.78
d2g45a1113 Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum 99.73
d2idaa1102 Hypothetical protein RPA1320 {Rhodopseudomonas pal 99.49
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-47  Score=385.66  Aligned_cols=255  Identities=18%  Similarity=0.254  Sum_probs=215.5

Q ss_pred             hhcCCcCCCCcchhHHHHHHHhCCHHHHHHHcCCCCC-CCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcc
Q 011215          190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK  268 (491)
Q Consensus       190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~l~~L~~~l~s~~~fk~~vsP~~ll~~i~~~s~  268 (491)
                      .++||.|+|||||||||||+|+++|+||++++..... .....++.++|..||..|+.+.   ..+.|..|+..+.   .
T Consensus         5 G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~~~~~~~---~   78 (347)
T d1nbfa_           5 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG---W   78 (347)
T ss_dssp             SCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTTCCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHTT---C
T ss_pred             CCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccCCcccchHHHHHHHHHHHHhcCC---CCcChHHHHHhhc---h
Confidence            4679999999999999999999999999999853322 2334679999999999999876   4789999988874   4


Q ss_pred             cccCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcccCceeEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCceeEE
Q 011215          269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS  348 (491)
Q Consensus       269 ~~F~~~~QqDA~EFL~~LLn~L~~~l~~~~~~~sii~~~F~G~l~~~~~C~~C~~~~~~~~~~~~~~v~~~~~~~~~s~~  348 (491)
                      +.|..+.||||+|||.+||+.|+.++.... ..++|.++|.|.+...++|..|+                     ..+.+
T Consensus        79 ~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~-~~~~i~~lF~g~~~~~~~C~~C~---------------------~~s~~  136 (347)
T d1nbfa_          79 ETLDSFMQHDVQELCRVLLDNVENKMKGTC-VEGTIPKLFRGKMVSYIQCKEVD---------------------YRSDR  136 (347)
T ss_dssp             CGGGGGSCBCHHHHHHHHHHHHHHHHTTST-TTTHHHHHHCEEEEEEEEESSSC---------------------CEEEE
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccceeceEEEEeEEeCCcc---------------------ceeee
Confidence            568899999999999999999999987554 45789999999999999999997                     78889


Q ss_pred             eecceeeeecCCCCCCcccccccccCCCCCHHHHHhhcccccce--------eeccccceEEEEEeccCCceeEEEEeeE
Q 011215          349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVT--------EVVRPHVARMRYRVTRLPKYMILHMRRF  420 (491)
Q Consensus       349 ~e~f~~LsLdlp~~~~~kd~~~~~~~p~vsL~~~L~~f~~~~~~--------ec~~~~~a~k~~~i~~lP~~LiihLkRF  420 (491)
                      .++|+.|+|++|..              .++.++|..+...+..        .|++...+.|+.+|.++|+||+|||+||
T Consensus       137 ~e~f~~l~L~i~~~--------------~~~~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~k~~~i~~lP~vL~i~l~Rf  202 (347)
T d1nbfa_         137 REDYYDIQLSIKGK--------------KNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRF  202 (347)
T ss_dssp             EEEESSEEEECTTC--------------CBHHHHHHHHTCCEEECGGGCEECSTTCEECEEEEEEEEECCSEEEEEEECE
T ss_pred             eccccccccccccc--------------cchhhhHHhhcchheeccccccccccCcceeccEEEEEEecCChheEeeeee
Confidence            99999999999863              4788888887765432        2344567888999999999999999999


Q ss_pred             eec--CceeecCCeeEeccCccccccCCCCCCCCCCCCCCCCceEEEEEEEEeccCCCCcEEEEEEeCCCCCC
Q 011215          421 TKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW  491 (491)
Q Consensus       421 ~~~--~~~~~K~~~~V~FP~~~LDL~~y~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~~~vr~~~~~~W  491 (491)
                      .++  .....|+.+.|.||.. |||++|+....    .....+|+|+|||+|.|++.+|||+||+|++.+++|
T Consensus       203 ~~~~~~~~~~K~~~~v~fp~~-Ldl~~~~~~~~----~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W  270 (347)
T d1nbfa_         203 MYDPQTDQNIKINDRFEFPEQ-LPLDEFLQKTD----PKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKW  270 (347)
T ss_dssp             EEETTTTEEEECCCCCBCCSE-EECGGGBSSCC----TTSCCEEEEEEEEEEEEETTEEEEEEEECTTSSSCC
T ss_pred             eeccccCcccccCceEeeeee-ecccccccccc----ccCccceeeEEEEEecCCCCCCEEEEeeecCCCCEE
Confidence            865  3577899999999985 99999987432    233467999999999999999999999999878899
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure