Citrus Sinensis ID: 011223

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
Protein Sequence
MASEDGDAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRVEFT
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHcccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccHcccHHHcHccEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masedgdavlsdvegeidvqtssdedfSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVtkardgsrsqldevTKAKDGLRSEIENSAHMLVTGIEKIsgkvsnfknfsagglprsqkytglpaVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIvddgnldqsglseslflpqetdmeENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSkrmsvdpssktNELFKVAENGLREAGIDFKFSKllsdgkvpvsddkanameTEEDEIYNLAGALENIVKASQLEIVELRHSVEELRVEFT
Flexible Loop (DISEMBL)
masedgdavlsdvegeidvqtssdedfsvERFREVLAELNRERQAreaaensatelsekfnRLKAlahesikrrdestrqrdealrekeeilrsndklsteiaevniakdevvkqldevtkardgsrsqldevtkakdglrseiensAHMLVTGIEKISGKVSNFKNFSagglprsqkytgLPAVVYGVIKRTNEIVEELVGqidataksrndvREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDlvqkksrevkslneavgqlvkekeHIVSLLRSalskrmsvdpssktnELFKVAENGLREAGIDFKfskllsdgkvpvsDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVeelrveft
Low Complexity Region (SEG)
MASEDGDAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSkihdqvddiikivddGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRVEFT
Disordered region (IsUnstruct)
****************************************************************************************************************************************************HMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDA****************FEIAIEVSELEATI************************************ELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL*********************RASLAGMESIYQLTRIVVEKTRDLV****************LV****HIVSL*********************KVAENGLREAGIDFKFSKLL********************EIYNLAGALENIVKASQLEIVELRH**********
Disordered Region (DISOPRED)
******D***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********SDVEGEIDVQTSSDEDFSVERFREVLAELNRE*************LSEKFNRLKALAHES***************REKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE******************KDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSA************TNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRVEFT
Disordered Region (DISPRO)
********VLSDV*GEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKV**********ETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRVEFT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASEDGDAVLSDVEGEIDVQTSSDEDFSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAHESIKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVxxxxxxxxxxxxxxxxxxxxxISGLREEVAKKSSFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIxxxxxxxxxxxxxxxxxxxxxFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	490
359473118	696	PREDICTED: uncharacterized protein At3g4	0.975	0.686	0.699	0.0
449494601	694	PREDICTED: uncharacterized LOC101212666	0.979	0.691	0.660	1e-180
449463814	694	PREDICTED: uncharacterized protein LOC10	0.979	0.691	0.658	1e-180
147817262	730	hypothetical protein VITISV_030267 [Viti	0.946	0.635	0.674	1e-180
296081381	765	unnamed protein product [Vitis vinifera]	0.904	0.579	0.678	1e-175
255548010	684	Paramyosin, putative [Ricinus communis]	0.965	0.691	0.645	1e-174
224100127	521	predicted protein [Populus trichocarpa]	0.934	0.879	0.664	1e-170
224107739	673	predicted protein [Populus trichocarpa]	0.934	0.680	0.658	1e-166
224082866	487	predicted protein [Populus trichocarpa]	0.928	0.934	0.658	1e-164
356525423	661	PREDICTED: uncharacterized protein At3g4	0.914	0.677	0.594	1e-157

>gi|359473118|ref|XP_002285440.2| PREDICTED: uncharacterized protein At3g49055-like [Vitis vinifera]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/506 (69%), Positives = 414/506 (81%), Gaps = 28/506 (5%)

Query: 4   EDGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELS 57
           ED DAVLSDVEG+      I ++  S ED SVERFRE+LAE++RERQAREAAENS +EL 
Sbjct: 7   EDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELL 66

Query: 58  EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD 117
             FNRLK+LAHE+IK+RDESTRQRDEALREKEE+LRSNDK+S E+AE    KDEV+KQ D
Sbjct: 67  VAFNRLKSLAHEAIKKRDESTRQRDEALREKEEVLRSNDKVSGELAEAIKLKDEVLKQRD 126

Query: 118 EVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177
           E+ K       QLDE  KA++  RSEIE SA MLVTGIEKISGKVSNFKNF+AGGLPRSQ
Sbjct: 127 EIAK-------QLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQ 179

Query: 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237
           KYTGLPA+ YGVIKRTNEIVEELV Q+DAT KSRND REQME RN+EIAIEVS+LEATIS
Sbjct: 180 KYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATIS 239

Query: 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIE-----------SQGLELRQLVNEYEDKLK 286
           GLREEV+KK+S +EN+EKS+ EKD K++++E           ++  EL+Q+V+EY+ KL 
Sbjct: 240 GLREEVSKKTSVVENVEKSMAEKDAKISDMEREMSEKIQLAENEMSELKQIVSEYDLKLG 299

Query: 287 NLES----HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENI 342
           NLES     R LL DQLN VSKIHD++ D+I+IVDD  LDQS +SESLFLPQ TDMEENI
Sbjct: 300 NLESIMESQRHLLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENI 359

Query: 343 RASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKR 402
           RASLAGMESIY+LTRIV EK R+L++ +SRE KSLNE V +LVKEKE I S LRSALS+R
Sbjct: 360 RASLAGMESIYELTRIVGEKIRNLMEDQSREAKSLNETVTRLVKEKEQIGSFLRSALSRR 419

Query: 403 MSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAG 462
           M++DPSSK  ELF+VAENGLREAGI+FKFS LL DGKV  S DKA  +ETEEDE+YN+ G
Sbjct: 420 MALDPSSKMKELFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELYNMTG 479

Query: 463 ALENIVKASQLEIVELRHSVEELRVE 488
           ALE+IVKASQLEI+EL+HSV+ELR E
Sbjct: 480 ALEHIVKASQLEIIELQHSVDELRAE 505

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494601|ref|XP_004159594.1| PREDICTED: uncharacterized LOC101212666 [Cucumis sativus]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 336/509 (66%), Positives = 406/509 (79%), Gaps = 29/509 (5%)

Query: 1   MAS---EDGDAVLSDVEGE---IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSAT 54
           MAS   ED D VLSDVEG+   I +Q  S E+ +VERFRE+LAE +RERQ+REAAENS +
Sbjct: 1   MASGLDEDADVVLSDVEGDEHPITIQNPSPEEITVERFREILAERDRERQSREAAENSKS 60

Query: 55  ELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVK 114
           EL   FNRLKALAHE+IK+RDE  RQRDEALREKEE L+ N+K+S E+AE N  +DE +K
Sbjct: 61  ELQVSFNRLKALAHEAIKKRDECGRQRDEALREKEEALKLNEKVSAELAEANRQRDEALK 120

Query: 115 QLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174
             DEVTK       + DE+ K +D LRSEI N++HMLVTGI+KIS KVS+FKNF+AGGLP
Sbjct: 121 LRDEVTK-------EFDEILKDRDTLRSEIGNASHMLVTGIDKISAKVSSFKNFTAGGLP 173

Query: 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEA 234
           RSQKYTGLPAV YGVIKRTNEI+EELV QID T KSRN+ REQME RN+EIAIEVS+LEA
Sbjct: 174 RSQKYTGLPAVAYGVIKRTNEIIEELVRQIDTTTKSRNETREQMELRNYEIAIEVSQLEA 233

Query: 235 TISGLREEVAKKSSFIENLEKSLIEKDEKVAE-----------IESQGLELRQLVNEYED 283
           TISGL++EV+KK+S IE+LE ++IEKD+K+ E            E +  +LRQLV EY+D
Sbjct: 234 TISGLKDEVSKKTSVIEDLENTIIEKDKKICENEVDLVGKLRRAEDEASDLRQLVQEYDD 293

Query: 284 KLKNL----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDME 339
           KL++L    ES RPLLVDQL  +SKIHDQ+ DIIKIVD  ++D S  SESLFLP+ETDME
Sbjct: 294 KLRDLESKMESQRPLLVDQLGLISKIHDQIYDIIKIVDVSDVDHSEFSESLFLPRETDME 353

Query: 340 ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSAL 399
           EN+RASLAGMESIY L ++V++KTR+L+++K RE K+LNE V QL+KEKEHI  LLR+AL
Sbjct: 354 ENVRASLAGMESIYALAKLVMDKTRNLIEEKIRESKNLNETVAQLLKEKEHIGYLLRTAL 413

Query: 400 SKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYN 459
           SKRM+ DPSSK N+LF+VAENGLREAGIDFKFSKLL + K   + D   A++  EDEI+ 
Sbjct: 414 SKRMTSDPSSKANQLFEVAENGLREAGIDFKFSKLLGEEKFSTTRDNRKALDA-EDEIFT 472

Query: 460 LAGALENIVKASQLEIVELRHSVEELRVE 488
           LAGALENIVKASQ+EI+ELRHS+EELR E
Sbjct: 473 LAGALENIVKASQIEIIELRHSLEELRAE 501

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463814|ref|XP_004149626.1| PREDICTED: uncharacterized protein LOC101212666 [Cucumis sativus]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 335/509 (65%), Positives = 406/509 (79%), Gaps = 29/509 (5%)

Query: 1   MAS---EDGDAVLSDVEGE---IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSAT 54
           MAS   ED D VLSDVEG+   I +Q  S E+ +VERFRE+LAE +RERQ+REAAENS +
Sbjct: 1   MASGLDEDADVVLSDVEGDEHPITIQNPSPEEITVERFREILAERDRERQSREAAENSKS 60

Query: 55  ELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVK 114
           EL   FNRLKALAHE+IK+RDE  RQRDEALREKEE L+ N+K+S E+AE N  +DE +K
Sbjct: 61  ELQVSFNRLKALAHEAIKKRDECGRQRDEALREKEEALKLNEKVSAELAEANRQRDEALK 120

Query: 115 QLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174
             DE+TK       + DE+ K +D LRSEI N++HMLVTGI+KIS KVS+FKNF+AGGLP
Sbjct: 121 LRDEITK-------EFDEILKDRDTLRSEIGNASHMLVTGIDKISAKVSSFKNFTAGGLP 173

Query: 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEA 234
           RSQKYTGLPAV YGVIKRTNEI+EELV QID T KSRN+ REQME RN+EIAIEVS+LEA
Sbjct: 174 RSQKYTGLPAVAYGVIKRTNEIIEELVRQIDTTTKSRNETREQMELRNYEIAIEVSQLEA 233

Query: 235 TISGLREEVAKKSSFIENLEKSLIEKDEKVAE-----------IESQGLELRQLVNEYED 283
           TISGL++EV+KK+S IE+LE ++IEKD+K+ E            E +  +LRQLV EY+D
Sbjct: 234 TISGLKDEVSKKTSVIEDLENTIIEKDKKICENEVDLVGKLRRAEDEASDLRQLVQEYDD 293

Query: 284 KLKNL----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDME 339
           KL++L    ES RPLLVDQL  +SKIHDQ+ DIIKIVD  ++D S  SESLFLP+ETDME
Sbjct: 294 KLRDLESKMESQRPLLVDQLGLISKIHDQIYDIIKIVDVSDVDHSEFSESLFLPRETDME 353

Query: 340 ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSAL 399
           EN+RASLAGMESIY L ++V++KTR+L+++K RE K+LNE V QL+KEKEHI  LLR+AL
Sbjct: 354 ENVRASLAGMESIYALAKLVMDKTRNLIEEKIRESKNLNETVAQLLKEKEHIGYLLRTAL 413

Query: 400 SKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYN 459
           SKRM+ DPSSK N+LF+VAENGLREAGIDFKFSKLL + K   + D   A++  EDEI+ 
Sbjct: 414 SKRMTSDPSSKANQLFEVAENGLREAGIDFKFSKLLGEEKFSTTRDNRKALDA-EDEIFT 472

Query: 460 LAGALENIVKASQLEIVELRHSVEELRVE 488
           LAGALENIVKASQ+EI+ELRHS+EELR E
Sbjct: 473 LAGALENIVKASQIEIIELRHSLEELRAE 501

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817262|emb|CAN66327.1| hypothetical protein VITISV_030267 [Vitis vinifera]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 340/504 (67%), Positives = 398/504 (78%), Gaps = 40/504 (7%)

Query: 4   EDGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELS 57
           ED DAVLSDVEG+      I ++  S ED SVERFRE+LAE++RERQAREAAENS +EL 
Sbjct: 7   EDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELL 66

Query: 58  EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD 117
             FNRLK+LAHE+IK+RDESTRQRDEAL            LS E+ E    KDEV+KQ D
Sbjct: 67  VAFNRLKSLAHEAIKKRDESTRQRDEAL------------LSGELXEAIKLKDEVLKQRD 114

Query: 118 EVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177
           E+ K       QLDE  KA++  RSEIE SA MLVTGIEKISGKVSNFKNF+AGGLPRSQ
Sbjct: 115 EIAK-------QLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQ 167

Query: 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237
           KYTGLPA+ YGVIKRTNEIVEELV Q+DAT KSRND REQME RN+EIAIEVS+LEATIS
Sbjct: 168 KYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATIS 227

Query: 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIE-----------SQGLELRQLVNEYEDKLK 286
           GLREEV+KK+S +EN+EKS+ EKD K++++E           ++  EL+Q+V+EY+ KL 
Sbjct: 228 GLREEVSKKTSVVENVEKSMAEKDAKISDMEREMSEKIQLAENEMSELKQIVSEYDLKLG 287

Query: 287 NLES----HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENI 342
           NLES     R LL DQLN VSKIHD++ D+I+IVDD  LDQS +SESLFLPQ TDMEENI
Sbjct: 288 NLESIMESQRHLLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENI 347

Query: 343 RASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKR 402
           RASLAGMESIY+LTRIV EK R+L++ +SRE K LNE V +LVKEKE I S LRSALS+R
Sbjct: 348 RASLAGMESIYELTRIVGEKIRNLMEDQSREAKXLNETVTRLVKEKEQIGSFLRSALSRR 407

Query: 403 MSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAG 462
           M++DPSSK  ELF+VAENGLREAGI+FKFS LL DGKV  S DKA  +ETEEDE+ N+ G
Sbjct: 408 MALDPSSKMKELFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELXNMTG 467

Query: 463 ALENIVKASQLEIVELRHSVEELR 486
           ALE+IVKASQLEI+EL+HSV+ELR
Sbjct: 468 ALEHIVKASQLEIIELQHSVDELR 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081381|emb|CBI16814.3| unnamed protein product [Vitis vinifera]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 336/495 (67%), Positives = 386/495 (77%), Gaps = 52/495 (10%)

Query: 4   EDGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELS 57
           ED DAVLSDVEG+      I ++  S ED SVERFRE+LAE++RERQAREAAENS +EL 
Sbjct: 122 EDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELL 181

Query: 58  EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD 117
             FNRLK+LAHE+IK+RDESTRQRDEALREKEE+LRSNDK              V+KQ D
Sbjct: 182 VAFNRLKSLAHEAIKKRDESTRQRDEALREKEEVLRSNDK--------------VLKQRD 227

Query: 118 EVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177
           E+ K       QLDE  KA++  RSEIE SA MLVTGIEKISGKVSNFKNF+AGGLPRSQ
Sbjct: 228 EIAK-------QLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQ 280

Query: 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237
           KYTGLPA+ YGVIKRTNEIVEELV Q+DAT KSRND REQME RN+EIAIEVS+LEATIS
Sbjct: 281 KYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATIS 340

Query: 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLES----HRP 293
           GLREE+                   ++AE E    EL+Q+V+EY+ KL NLES     R 
Sbjct: 341 GLREEI-------------------QLAENEMS--ELKQIVSEYDLKLGNLESIMESQRH 379

Query: 294 LLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIY 353
           LL DQLN VSKIHD++ D+I+IVDD  LDQS +SESLFLPQ TDMEENIRASLAGMESIY
Sbjct: 380 LLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENIRASLAGMESIY 439

Query: 354 QLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNE 413
           +LTRIV EK R+L++ +SRE KSLNE V +LVKEKE I S LRSALS+RM++DPSSK  E
Sbjct: 440 ELTRIVGEKIRNLMEDQSREAKSLNETVTRLVKEKEQIGSFLRSALSRRMALDPSSKMKE 499

Query: 414 LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQL 473
           LF+VAENGLREAGI+FKFS LL DGKV  S DKA  +ETEEDE+YN+ GALE+IVKASQL
Sbjct: 500 LFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELYNMTGALEHIVKASQL 559

Query: 474 EIVELRHSVEELRVE 488
           EI+EL+HSV+ELR E
Sbjct: 560 EIIELQHSVDELRAE 574

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548010|ref|XP_002515062.1| Paramyosin, putative [Ricinus communis] gi|223546113|gb|EEF47616.1| Paramyosin, putative [Ricinus communis]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 329/510 (64%), Positives = 401/510 (78%), Gaps = 37/510 (7%)

Query: 1   MASEDGD---AVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSA 53
           MAS  GD   AVLSDVEG+    I ++T S ED SVE++RE+LAEL+RER AREAAE S 
Sbjct: 1   MASGPGDENDAVLSDVEGDDPLPIVIRTPSLEDISVEKYRELLAELDRERIAREAAETSK 60

Query: 54  TELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVV 113
           +EL   FNRLKALAHE+IK+RDE  RQRDEALR+KEE L+  +++S E++++N  +DE+V
Sbjct: 61  SELQVSFNRLKALAHEAIKKRDECARQRDEALRDKEEALKEKERISVELSDLNKQRDEIV 120

Query: 114 KQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGL 173
           KQ DEV K               K+GL+SEIE+S HML++GIEKIS KVSNFKNFSA GL
Sbjct: 121 KQFDEVVKV--------------KEGLQSEIESSRHMLISGIEKISNKVSNFKNFSALGL 166

Query: 174 PRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELE 233
           PRS KY GL AV YGVIKRTNEIVEE++ QID T KSRN+ REQ+EQRN+EIAIEVS+LE
Sbjct: 167 PRSHKYNGLQAVAYGVIKRTNEIVEEMIKQIDVTTKSRNEAREQIEQRNYEIAIEVSQLE 226

Query: 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE-----------SQGLELRQLVNEYE 282
           A+ISGLR+E A+K S IENL+KSL EK+ KVAE+E            +GLE+++++ EY+
Sbjct: 227 ASISGLRDEAAEKCSVIENLQKSLAEKEGKVAEVERELLEKTHLVEKEGLEMKEVIREYD 286

Query: 283 DKLKNLES----HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDM 338
           DKL++ ES     RPLLVDQL  V++IHD++ D+IKIVD  +LD S LSESLFLPQ+TDM
Sbjct: 287 DKLRDFESKIELQRPLLVDQLKLVAQIHDRLYDVIKIVDSNHLD-SELSESLFLPQQTDM 345

Query: 339 EENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSA 398
           EEN+RASLAGMESIY+L+RIV EKTRDL+++KS EVK LNE V +LVKEKEHI SLLRSA
Sbjct: 346 EENLRASLAGMESIYELSRIVGEKTRDLLEEKSHEVKVLNEMVARLVKEKEHIGSLLRSA 405

Query: 399 LSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIY 458
           LSKRM +D SSKT+ELF+ AENGL+EAGIDFKFSK++ D K+  S DK      EEDE+Y
Sbjct: 406 LSKRMKLDQSSKTSELFQAAENGLKEAGIDFKFSKVIGDNKISGSQDKGGTPYMEEDEVY 465

Query: 459 NLAGALENIVKASQLEIVELRHSVEELRVE 488
            LAGALENIVK SQLEI+EL+H+VEELR E
Sbjct: 466 TLAGALENIVKVSQLEIIELQHNVEELRAE 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100127|ref|XP_002311753.1| predicted protein [Populus trichocarpa] gi|222851573|gb|EEE89120.1| predicted protein [Populus trichocarpa]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 335/504 (66%), Positives = 401/504 (79%), Gaps = 46/504 (9%)

Query: 4   EDGDAVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEK 59
           ED DAVLSDVEG+    I +++ S ED SVE+FRE+L   +RER AREAAE S +E+   
Sbjct: 7   EDADAVLSDVEGDEPVPIVMKSPSQEDISVEKFRELL---DRERAAREAAETSKSEIQVS 63

Query: 60  FNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEV 119
           FNRLKALAHE+IK+RDE +RQRDEA+REKEE L++N+KLS E+ +VN +K+E  K+ D+ 
Sbjct: 64  FNRLKALAHEAIKKRDECSRQRDEAMREKEEALKANEKLSNELIQVNRSKEETQKKFDD- 122

Query: 120 TKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKY 179
                               L+SE E S HMLV+GIEKISGK+SNFKNF+A GLPRSQKY
Sbjct: 123 --------------------LQSETEKSRHMLVSGIEKISGKLSNFKNFAAEGLPRSQKY 162

Query: 180 TGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL 239
           +GLPAV YGVIKRTNEIVEELV QID TAKSRND REQMEQRN+EIAIEVS+LEA ISGL
Sbjct: 163 SGLPAVAYGVIKRTNEIVEELVRQIDVTAKSRNDAREQMEQRNYEIAIEVSQLEAAISGL 222

Query: 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGL-----------ELRQLVNEYEDKLKNL 288
           R+EVAKK++ IE LEKS++EK+ KV+EIE + L           E+R LV EY+DKL+NL
Sbjct: 223 RDEVAKKTTLIEGLEKSVVEKEGKVSEIEREMLEKMHLVEKEASEMRDLVGEYDDKLRNL 282

Query: 289 ----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRA 344
               ESHRPLL DQLN V+KIHDQ+ D I+IV+  +L+ S +SESLFLPQ+TD+EENIRA
Sbjct: 283 ESKMESHRPLLFDQLNLVAKIHDQLYDAIEIVNTSHLN-SEVSESLFLPQQTDVEENIRA 341

Query: 345 SLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMS 404
           SLAGMESIY L+RIV EKTRDLV++++ EVK+LNE V +L+KEKEHI +LLRSALSKRM 
Sbjct: 342 SLAGMESIYDLSRIVAEKTRDLVEERNHEVKNLNETVDRLMKEKEHIGTLLRSALSKRMK 401

Query: 405 VDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGAL 464
           +DPSSKTNELF+VAENGLREAGIDFKFSK+L DG+  VS DK  ++E E DEIY LAGAL
Sbjct: 402 LDPSSKTNELFQVAENGLREAGIDFKFSKVLGDGE--VSGDKGGSLEAESDEIYTLAGAL 459

Query: 465 ENIVKASQLEIVELRHSVEELRVE 488
           ENIVKASQLEI+EL+HSVEELR E
Sbjct: 460 ENIVKASQLEIIELQHSVEELRAE 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107739|ref|XP_002314584.1| predicted protein [Populus trichocarpa] gi|222863624|gb|EEF00755.1| predicted protein [Populus trichocarpa]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 332/504 (65%), Positives = 401/504 (79%), Gaps = 46/504 (9%)

Query: 4   EDGDAVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEK 59
           +D DAVLSDVEGE    I +++ S ED SVE+FRE+L   +RER AREAAE S +EL   
Sbjct: 7   DDADAVLSDVEGEDPVEIVIKSPSQEDISVEKFRELL---DRERAAREAAETSKSELQVS 63

Query: 60  FNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEV 119
           FNRLKALAHE++K+RDE +RQRDEALREKEE L++N+KLS E+ +VN +K+E+ K+ D+ 
Sbjct: 64  FNRLKALAHEALKKRDECSRQRDEALREKEEALKANEKLSNELIQVNGSKEEIEKKFDD- 122

Query: 120 TKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKY 179
                               L+S+IENS HMLV+GI+KISGK SNFKNF+A GLPRSQKY
Sbjct: 123 --------------------LQSQIENSRHMLVSGIDKISGKFSNFKNFAAAGLPRSQKY 162

Query: 180 TGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL 239
            GL AV +GVIKRTNEIVEELV QID TAKSRND REQ+EQRN+EIAIEVS+LEATISGL
Sbjct: 163 NGLQAVAFGVIKRTNEIVEELVRQIDVTAKSRNDAREQIEQRNYEIAIEVSQLEATISGL 222

Query: 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE-----------LRQLVNEYEDKLKNL 288
           R+EVAKK++ +E+LEKS++EK+ KV+EIE + LE           LR LV EY+DKL+NL
Sbjct: 223 RDEVAKKTTLVEDLEKSVVEKEGKVSEIEREMLERKHLVEKEASGLRDLVGEYDDKLRNL 282

Query: 289 ----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRA 344
               ESHR LL DQLN V+KIH+++ D+IKIVD  +LD S +SESLFLPQ+T++EENIRA
Sbjct: 283 ESKMESHRLLLFDQLNLVAKIHNRLYDVIKIVDSNHLD-SEVSESLFLPQQTEVEENIRA 341

Query: 345 SLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMS 404
           SLAGMESIY+++RIV EKTRDLV++K+ E K+LNE VG LVKEKEHI SLLRSALSKR+ 
Sbjct: 342 SLAGMESIYEVSRIVAEKTRDLVEEKNHEEKNLNETVGILVKEKEHIGSLLRSALSKRIE 401

Query: 405 VDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGAL 464
           + PSSKT+ELF+VAENGLREAGIDFKFSK++ DGK  VS DK    +TE DEIY LAGAL
Sbjct: 402 LHPSSKTSELFQVAENGLREAGIDFKFSKVVGDGK--VSYDKGGLPDTESDEIYTLAGAL 459

Query: 465 ENIVKASQLEIVELRHSVEELRVE 488
           ENIVKASQLEI+EL+HSVEELR E
Sbjct: 460 ENIVKASQLEIIELQHSVEELRAE 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082866|ref|XP_002335441.1| predicted protein [Populus trichocarpa] gi|222834171|gb|EEE72648.1| predicted protein [Populus trichocarpa]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 330/501 (65%), Positives = 399/501 (79%), Gaps = 46/501 (9%)

Query: 5   DGDAVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKF 60
           D +AVLSDVEGE    I +++ S ED SVE+FRE+L   +RER AREAAE S +EL   F
Sbjct: 8   DAEAVLSDVEGEDPVEIVIKSPSQEDISVEKFRELL---DRERAAREAAETSKSELQVSF 64

Query: 61  NRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVT 120
           NRLKALAHE++K+RDE +RQRDEALREKEE L++N+KLS E+ +VN +K+E+ K+ D+  
Sbjct: 65  NRLKALAHEALKKRDECSRQRDEALREKEEALKANEKLSNELIQVNGSKEEIEKKFDD-- 122

Query: 121 KARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYT 180
                              L+S+IENS HMLV+GI+KISGK SNFKNF+A GLPRSQKY 
Sbjct: 123 -------------------LQSQIENSRHMLVSGIDKISGKFSNFKNFAAAGLPRSQKYN 163

Query: 181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLR 240
           GL AV +GVIKRTNEIVEELV QID TAKSRND REQ+EQRN+EIAIEVS+LEATISGLR
Sbjct: 164 GLQAVAFGVIKRTNEIVEELVRQIDVTAKSRNDAREQIEQRNYEIAIEVSQLEATISGLR 223

Query: 241 EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE-----------LRQLVNEYEDKLKNL- 288
           +EVAKK++ +E+LEKS++EK+ KV+EIE + LE           LR LV EY+DKL+NL 
Sbjct: 224 DEVAKKTTLVEDLEKSVVEKEGKVSEIEREMLERKHLVEKEASGLRDLVGEYDDKLRNLE 283

Query: 289 ---ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRAS 345
              ESHR LL DQLN V+KIH+++ D+IKIVD  +LD S +SESLFLPQ+T++EENIRAS
Sbjct: 284 SKMESHRLLLFDQLNLVAKIHNRLYDVIKIVDSNHLD-SEVSESLFLPQQTEVEENIRAS 342

Query: 346 LAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSV 405
           LAGMESIY+++RIV EKTRDLV++K+ E K+LNE VG LVKEKEHI SLLRSALSKR+ +
Sbjct: 343 LAGMESIYEVSRIVAEKTRDLVEEKNHEEKNLNETVGILVKEKEHIGSLLRSALSKRIEL 402

Query: 406 DPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALE 465
            PSSKT+ELF+VAENGLREAGIDFKFSK++ DGK  VS DK    +TE DEIY LAGALE
Sbjct: 403 HPSSKTSELFQVAENGLREAGIDFKFSKVVGDGK--VSYDKGGLPDTESDEIYTLAGALE 460

Query: 466 NIVKASQLEIVELRHSVEELR 486
           NIVKASQLEI+EL+HSVEELR
Sbjct: 461 NIVKASQLEIIELQHSVEELR 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525423|ref|XP_003531324.1| PREDICTED: uncharacterized protein At3g49055-like [Glycine max]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 299/503 (59%), Positives = 382/503 (75%), Gaps = 55/503 (10%)

Query: 5   DGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSE 58
           D DAVLSDVE +      ++ +  S ED SVE+ R+VLAEL+RERQAR AAEN+ +EL  
Sbjct: 8   DADAVLSDVEDDGGDPIPLETKAPSPEDVSVEKLRDVLAELDRERQARIAAENTKSELQV 67

Query: 59  KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE 118
            FNRLKALAHE+IK+RDE  RQRD+A+REKEE  +                         
Sbjct: 68  SFNRLKALAHEAIKKRDEFGRQRDDAVREKEETAK------------------------- 102

Query: 119 VTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQK 178
                     QL+E  K +D LRSEI NS+HMLVTG+EKIS KVS+F   +A  LPRSQK
Sbjct: 103 ----------QLEETAKERDALRSEIGNSSHMLVTGMEKISAKVSSFAG-NALPLPRSQK 151

Query: 179 YTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISG 238
           YTG+ AV YGVIKR NEIVEEL+ Q +ATAK+RN+ REQMEQRN+EIAIEVS+LEATISG
Sbjct: 152 YTGMAAVAYGVIKRANEIVEELLKQNEATAKARNEAREQMEQRNYEIAIEVSQLEATISG 211

Query: 239 LREEVAKKSSFIENLEKSLIEKDEKVAEI-------ESQGLELRQLVNEYEDKLKNL--- 288
           LR++VAK +S +E+LE+ L  +D+++ E+       +S+ L+L++ V E E+KL NL   
Sbjct: 212 LRDDVAKNASIVEDLERDLAVRDQRLNEVSENLSKEQSEALQLKEFVAECEEKLSNLESR 271

Query: 289 -ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLA 347
            ES RPLL+DQL++VSKIH+Q+ +++KI+DDG    S LSESLF+PQETD+EENIRASLA
Sbjct: 272 MESQRPLLIDQLSFVSKIHNQICNVVKILDDGGT--SELSESLFVPQETDVEENIRASLA 329

Query: 348 GMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDP 407
           GMESIY+LT+IVV+K +D++++K RE+KSL+E V QLV+EK+ I SLLRSALSKRM+VDP
Sbjct: 330 GMESIYELTKIVVQKAKDVLEEKDREIKSLDETVAQLVREKDQIGSLLRSALSKRMAVDP 389

Query: 408 SSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI 467
           SS+ +ELF+ AENGLREAGIDFKFSKLL DGKV  S+DK++  E +EDEIY+LAGALE++
Sbjct: 390 SSRKSELFQAAENGLREAGIDFKFSKLLGDGKVAASNDKSDTTEKQEDEIYSLAGALEDV 449

Query: 468 VKASQLEIVELRHSVEELRVEFT 490
           V+ASQLEI+EL+H+V ELR E +
Sbjct: 450 VRASQLEIIELKHTVGELRAELS 472

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	490
TAIR|locus:2024081	678	AT1G24560 "AT1G24560" [Arabido	0.910	0.657	0.534	7.3e-114
TAIR|locus:2156922	788	ATGRIP [Arabidopsis thaliana (	0.873	0.543	0.229	3.2e-13
TAIR|locus:2152985	1586	CIP1 "COP1-interactive protein	0.877	0.271	0.227	5.1e-13
WB|WBGene00003777	2003	nmy-2 [Caenorhabditis elegans	0.742	0.181	0.225	2.8e-10
WB|WBGene00010306	1133	F59A2.6 [Caenorhabditis elegan	0.804	0.347	0.214	3.8e-10
WB|WBGene00011696	1205	eea-1 [Caenorhabditis elegans	0.922	0.375	0.226	6.8e-10
UNIPROTKB|F1MLU7	1302	KTN1 "Uncharacterized protein"	0.859	0.323	0.222	7.5e-10
UNIPROTKB|F1LMV6	2877	Dsp "Protein Dsp" [Rattus norv	0.863	0.147	0.215	1.4e-09
DICTYBASE|DDB_G0290503	1492	DDB_G0290503 [Dictyostelium di	0.928	0.304	0.197	3.1e-09
CGD|CAL0001468	895	SYS3 [Candida albicans (taxid:	0.846	0.463	0.207	3.5e-09

TAIR|locus:2024081 AT1G24560 "AT1G24560" [Arabidopsis thaliana (taxid:3702)]

 Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
 Identities = 249/466 (53%), Positives = 326/466 (69%)

Query:    41 RERQAREAAENSATELSEKFNRLKAL--AHESIKRRDESTRQRDEALREKEEILRSNDKL 98
             ++    EA++   TEL  + +R K    A ES K   + +  R +AL    E ++  D+ 
Sbjct:    25 KDSPREEASDERITELIAELDREKKAREAAESSKSELQVSFNRLKALAV--EAIKKRDES 82

Query:    99 STEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKI 158
               E  E    K+ +  +L+ V K +D    +LDE  +++DGL++EIENS+HMLV+GIEKI
Sbjct:    83 KRERDEALKEKENLTNELENVNKGKDEMSKKLDEALRSRDGLKAEIENSSHMLVSGIEKI 142

Query:   159 SGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQM 218
             SGKVS+FKNFS GGLP+SQKYTGL +V YGVIKRTNEIVEELV QID TAKSRN+ REQM
Sbjct:   143 SGKVSSFKNFSNGGLPKSQKYTGLTSVAYGVIKRTNEIVEELVRQIDTTAKSRNEAREQM 202

Query:   219 EQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE----- 273
             +QRN+EIAIEVS+LE+ IS LR EVA+K+S +++LE+ + EK++++AE+E   LE     
Sbjct:   203 DQRNYEIAIEVSQLESAISNLRLEVAEKASIVDDLERGVSEKEKRIAELEKGNLEKVSLL 262

Query:   274 ------LRQLVNEYEDKLKNLE----SHRPLLVDQLNYVSXXXXXXXXXXXXXXXGNLDQ 323
                   L+QLV+EY+ KLK +E    + RPLL+DQLN VS                + +Q
Sbjct:   263 EGEVVELKQLVDEYDGKLKTMELKMVAQRPLLMDQLNLVSRIHDQLYEVVRIVDGNSSEQ 322

Query:   324 SGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQ 383
             S LSES F+PQET+MEENIRASLAGMESI++LT++V  K + LV++KS E+K+LNE VG 
Sbjct:   323 SDLSESFFMPQETEMEENIRASLAGMESIFELTKVVSGKAQSLVEEKSHELKNLNETVGL 382

Query:   384 LVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVS 443
             LVKEKEHI +LLRSALSKR+  +  S+  ELF+ AENGLR+ G D KF+KLL DGKV  S
Sbjct:   383 LVKEKEHIGTLLRSALSKRVIGEQPSQKRELFQAAENGLRDGGTDSKFAKLLKDGKVQDS 442

Query:   444 -DDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRVE 488
               D  +    E++EIY+LA  LENIVKASQLEIVEL+H +E  R E
Sbjct:   443 RSDNTHDHSKEDNEIYSLASTLENIVKASQLEIVELQHLLEASREE 488

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

TAIR|locus:2156922 ATGRIP [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 106/462 (22%), Positives = 193/462 (41%)

Query:    16 EIDVQTSS-DEDFSVERFREVLAE--LNRERQAREAAENSATELSEKFNRLKALAHESIK 72
             ++  Q +S   +  VE+   V AE  L   R+A   A+  + E S KF++++    + IK
Sbjct:    86 QLQEQVASLSREIDVEKQTRVAAEQALEHLREAYSEADAKSQEYSSKFSQVEQKLDQEIK 145

Query:    73 RRDES--------TRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARD 124
              RDE         TR    A +  +EI +  D L     EVN   +    Q   + +  +
Sbjct:   146 ERDEKYADLDAKFTRLHKRAKQRIQEIQKEKDDLDARFREVNETAERASSQHSSMQQELE 205

Query:   125 GSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISG----KVSNFKNFSAGGLPRSQKYT 180
              +R Q +E  KA D  R ++ ++ + L   IE++ G    K +  +      L + Q   
Sbjct:   206 RTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQSLLDKDQILE 265

Query:   181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLR 240
              L   +  V +R    V EL      +AK + ++ E +E +  +   E  +   TIS L+
Sbjct:   266 DLKKQLQAVEERKQIAVTEL------SAKHQKNL-EGLEAQVVDALSERDKAAETISSLQ 318

Query:   241 EEVAKKSSFIENLEKSLIEKDEKV-AEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL 299
               +A+K S I  +E +   +  ++ A  E+   EL  L +E E + +  E+    L  +L
Sbjct:   319 VLLAEKESKIAEMEAAATGEAARLRAAAETLKGELAHLKSENEKEKETWEASCDALKSKL 378

Query:   300 NYVSXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETDME---ENIRASLAGMESIYQLT 356
                                    +  +   +   ++ +++   E I   L    S Y++ 
Sbjct:   379 EIAESNYLQAEIEVAKMRSQLGSEMSMQTQILSTKDAELKGAREEINR-LQSEFSSYKIR 437

Query:   357 RIVVEKTRDL---VQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNE 413
                + + +D+     K S ++KSL EA+ +  KE  ++VS  R    + +    +S   E
Sbjct:   438 AHALLQKKDMELAAAKDSEQIKSLEEALKEAEKEV-YLVSAERDRAQQDLQSALASLEKE 496

Query:   414 LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEED 455
             L + A   L++A    K  ++  D  V  + ++A     EED
Sbjct:   497 LEERA-GALKDASEQIKSLEVKLDSTV--ARNQAEKQAWEED 535

GO:0005737 "cytoplasm" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0048193 "Golgi vesicle transport" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 5.1e-13, P = 5.1e-13
 Identities = 107/470 (22%), Positives = 214/470 (45%)

Query:    38 ELNRE-RQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEE---ILR 93
             EL+   + A E +   +T++SE  + L+      ++     + +  E L EKE    +L 
Sbjct:   960 ELSESLKAAEEESRTMSTKISETSDELER-TQIMVQELTADSSKLKEQLAEKESKLFLLT 1018

Query:    94 SND-KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV 152
               D K   +I E+      +  +L+ V +AR      L+    +K  +  ++E     +V
Sbjct:  1019 EKDSKSQVQIKELEATVATLELELESV-RARI---IDLETEIASKTTVVEQLEAQNREMV 1074

Query:   153 TGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRN 212
               I ++  K    +      L  +QK           I+     ++ L  ++D+ +  + 
Sbjct:  1075 ARISELE-KTMEERGTELSAL--TQKLEDNDKQSSSSIETLTAEIDGLRAELDSMSVQKE 1131

Query:   213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGL 272
             +V +QM  ++ E ++++  L+  ++GLR++VA   S    LE  L +K E+++E      
Sbjct:  1132 EVEKQMVCKSEEASVKIKRLDDEVNGLRQQVASLDSQRAELEIQLEKKSEEISEY----- 1186

Query:   273 ELRQLVNEYEDKLKNLESHRPLLVDQLNYVSXXXXXXXXXXXXXXXGNLDQSGLSESLFL 332
              L Q+ N  E+ +  ++ H  +L +++N +S               G   +S L E L  
Sbjct:  1187 -LSQITNLKEEIINKVKVHESIL-EEINGLSEKIKGRELELETL--GK-QRSELDEELRT 1241

Query:   333 PQETDMEENIRASLAGMESIYQLTRIV--VEKTRDLVQKKSREVKSLNEAVGQLVKEKEH 390
              +E +++ + + ++A  E I  LT ++  ++   D +Q +  E ++  E   Q   E  +
Sbjct:  1242 KKEENVQMHDKINVASSE-IMALTELINNLKNELDSLQVQKSETEAELEREKQEKSELSN 1300

Query:   391 IVSLLRSALSKRMSV-----DPSSKTNELFKVAENGLREAGIDFKFS-KLLSD-GKVPVS 443
              ++ ++ AL ++ +      +   + NELFK  E  L +  +D+K + +LL + GK   S
Sbjct:  1301 QITDVQKALVEQEAAYNTLEEEHKQINELFKETEATLNKVTVDYKEAQRLLEERGKEVTS 1360

Query:   444 DDKA-----NAMETEEDEIYNLAGALENIV-KASQLEIVELRHSVEELRV 487
              D         ME+  +E+      +E ++ K S +E V+LR S ++LRV
Sbjct:  1361 RDSTIGVHEETMESLRNELEMKGDEIETLMEKISNIE-VKLRLSNQKLRV 1409

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

WB|WBGene00003777 nmy-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 177 (67.4 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 93/412 (22%), Positives = 183/412 (44%)

Query:    25 EDFSVERFREVLAELNRER-QAREAAENSATELSEKFNRLKALAH--ESIKRRDEST-RQ 80
             ED S     EV  E +++  +A+   E +  E++++  + K   H  E+ +R  E+  R+
Sbjct:  1019 EDLSSRLIDEV--ERSKQLVKAKARLEATVAEINDELEKEKQQRHNAETARRAAETQLRE 1076

Query:    81 RDEALREK----EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLD---EV 133
               E+  EK    EE+     +  +E+++++I  DE +    ++ +     R+QLD   E 
Sbjct:  1077 EQESCLEKTRKAEELTNQLMRKESELSQISIRNDEELAARQQLEREIREIRAQLDDAIEE 1136

Query:   134 TKAKDGLRSEIENSAHMLVTGIEKISGKV--SNFKNFSAGGLP--RSQKYTGLPAVVYGV 189
             T  +   R + E +   +   +E    ++  SN K      L   R ++Y  L   +   
Sbjct:  1137 TNKEKAARQKAEKARRDMAEELESYKQELEESNDKTVLHSQLKAKRDEEYAHLQKQLEET 1196

Query:   190 IKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSF 249
             +K + E+VEE+  Q     +  N+  +Q++++        S  E+     R E++  +S 
Sbjct:  1197 VKSSEEVVEEMKAQNQKKIEELNETIDQLKRQKISADKAKSSAESDNENFRAELSNIASA 1256

Query:   250 IENLEK-------SLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302
                 EK       SL+EKD K+ E++S   +L   +++  ++L++++  +    + LN  
Sbjct:  1257 RLEAEKKRKAAETSLMEKDHKMREMQSNLDDLMAKLSKMNNELESIQKAKSA-DETLN-- 1313

Query:   303 SXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETDMEENIRASLAG-MESIYQLTRIVVE 361
                              +LD   LSE   L + ++ +   RA+L   +  + +   + VE
Sbjct:  1314 ---------SNLLKKNASLDMQ-LSE---LTEASEEDRRTRATLNNKIRQLEEDLAVAVE 1360

Query:   362 KTRDL------VQKKSREVKSL-NEAVGQLVKEKEHIVSLLRSALSKRMSVD 406
                D       ++K+ +EVKSL  EA  +L +E   ++  LR    K +S +
Sbjct:  1361 ARDDALDAQEKIEKEVKEVKSLLAEARKKLDEENREVMEELRKKKEKELSAE 1412

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI;IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009949 "polarity specification of anterior/posterior axis" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IGI

GO:0016460 "myosin II complex" evidence=ISS

GO:0005819 "spindle" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0032154 "cleavage furrow" evidence=IDA

GO:0005516 "calmodulin binding" evidence=IPI

WB|WBGene00010306 F59A2.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 180 (68.4 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 90/420 (21%), Positives = 185/420 (44%)

Query:    14 EGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKR 73
             + E+  Q S  +   +E+   + AE+N  +  RE  +    ++++K  R++    ES K+
Sbjct:    39 KNEMVQQLSRLQQEMLEKCDALQAEVNEAKALREEIQAKYDDVTQKAERIQGELEES-KK 97

Query:    74 RDESTRQ--RDEALREKEEIL-RSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQL 130
               ES +Q   +E  +E+EE L ++ +KL++E    NI  DEV K+L++  +    +R  +
Sbjct:    98 VLESEKQAFENEKEQEREEQLAKAMEKLNSE---QNIL-DEVTKKLEQSEEEVLAARGAI 153

Query:   131 DEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVI 190
              E+T+  +    E   +   L    +K+    ++ K FS            +   +    
Sbjct:   154 QELTEKLEESEKETSTAKTELEAVSKKLDSSETSLKEFS-------DMIEAMKIQLINCE 206

Query:   191 KRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFI 250
             K+ +E VE L  +++   K+ +DV  Q +        E+ +       +++++ +  S I
Sbjct:   207 KQKDEAVELLKQKLEEVEKNMSDVEVQKQLLLESTTSEMKQHAEAAEIVKKQLEEAQSSI 266

Query:   251 ENLEKSLI-EKDEKVAEIESQGLELRQLVNEYEDKLKNLES---HRPLLVDQLNYVSXXX 306
             ENL+K    E++ K A    +   + ++  + E   K LE+    +  L +Q++ +    
Sbjct:   267 ENLKKDAENERNLKTALESDESSAISEITKQMEAAKKELEASEKEKSELREQMDRLQKVH 326

Query:   307 XXXXXXXXXXXXGNLDQSGLSESLFLPQETDMEENIRASLAG-MESIYQLTRIVVEKTRD 365
                           L ++   E   + + T+ E+  R  LAG +E+  +  ++V E+   
Sbjct:   327 NAGQEDIQ-----KLQKTWELEMAKIAKSTEDEKLAREQLAGELENAKEDLKVVEEEKHT 381

Query:   366 LVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREA 425
              +Q+    +    + V  L ++ E   S L S+  +  S   + K  EL K  +N  + +
Sbjct:   382 GIQRAQGALDDAEKEVKVLKEQLERAQSALESS-QELASSQKADKIQELEKELQNAQKRS 440

GO:0000042 "protein targeting to Golgi" evidence=IEA

WB|WBGene00011696 eea-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 178 (67.7 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 113/499 (22%), Positives = 214/499 (42%)

Query:    23 SDEDFSVERFREVLAELNRE--RQAREAAENS--ATELSEKFNRLKALAH---ESIKRRD 75
             S+ D S+   +E LAE  ++  +   E  E++     L+ + N+L+  +    E I   +
Sbjct:   446 SERDSSINDLKEKLAESEKKATKYKNELKEHADLVENLTLQLNKLQENSKDLMEKISAGE 505

Query:    76 ESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKA-RDGSRSQLDEVT 134
                +   E L E+E++  +N+ L T   +   A  E+  ++ E+ K  RD   S+ D+  
Sbjct:   506 GGAKMAIEQL-EQEKVKLTNE-LQTSSEKTKKASGELEAKISELEKKLRDAEASRTDKEQ 563

Query:   135 KAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLP-----AVVYG- 188
             K K     E E+    L    ++I  K   F           QK T        A+V   
Sbjct:   564 KWKQ----EKESFERKLAEAEDEIKRKGERFVEMEKEMEEERQKATDRTLKLKDALVNSE 619

Query:   189 ----VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVA 244
                  IK+ +E  E++V + DA  +      E   Q+  E      ELEA++S     V+
Sbjct:   620 KNLETIKKESEDREKIVREKDAHLEENKKRIEDAVQKLEEAEKRARELEASVSSRDTTVS 679

Query:   245 KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSX 304
              K S +  L+  L E +  + E++ Q   + ++ NE  +K + +E+    + D+  +   
Sbjct:   680 TKESELSELKGKLTESNSFIEELKVQ---VEKVSNEISEKQQEVENLMAEMRDKEAHWKT 736

Query:   305 XXXXXXXXXXXXXXGNLDQSG----LSESLFLPQETDMEENIRASLAGMESIYQLTRIVV 360
                            N + S     + E L   +ET  EE  +  L  ++S  +  +  V
Sbjct:   737 KRDEFEAQMLRNQEDNEEASSTLKSVQEQLMKEKETSGEE--KNQLISVKSQLEELKTEV 794

Query:   361 EKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSL---LRSAL----SKRMSVDPSSKTNE 413
             E+     ++K++E++ L  AV    +E++ + +    LR+      SK  S++ S +  E
Sbjct:   795 ERLIRSEEEKTQEIEKLKSAVTATTQERDELTATSESLRTECENLNSKIQSIEESRRHAE 854

Query:   414 LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVK---A 470
               K +EN  R      +  K + + +  +   +  A+ET+++EI +L    + +V+    
Sbjct:   855 E-KGSENLERMITEKSRLEKDIEERESTIQSIQ-EALETKDNEIESLK-TTQRVVEDELV 911

Query:   471 SQLEIVELRHS-VEELRVE 488
             S++  +E  +S +EE   E
Sbjct:   912 SKISHIESFNSRIEEFEKE 930

GO:0046872 "metal ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISS;IMP

UNIPROTKB|F1MLU7 KTN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 7.5e-10, P = 7.5e-10
 Identities = 102/459 (22%), Positives = 194/459 (42%)

Query:    34 EVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILR 93
             E L    ++  ++ AA+ SA+ L+E+ +++ A   + IK+ ++S     + L  KEE L+
Sbjct:   579 EALKAQIQQFHSQIAAQTSASALAEELHKVIAEKDKQIKQTEDSLANEHDHLASKEEELK 638

Query:    94 S----NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAH 149
                  N  L  E+ ++    +E      E+ K +     + D++   ++ L+ EI N   
Sbjct:   639 DIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQKSIHVKDDKIRLLEEQLQCEISNK-- 696

Query:   150 MLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNE---IVEELV--GQI 204
             M    I     K    +      L   Q    +   +   I+  +E    VEEL+  G I
Sbjct:   697 MEEFKILSDQNKALQLEVQKLQTLVSEQPNKDVLEQMERCIQEKDEKLKTVEELLETGLI 756

Query:   205 DATAKSR--NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDE 262
                 K    N +R +    N  +A EV +L+A     + +    +S +E L+K + EKD 
Sbjct:   757 QVATKEEELNAIRTE----NSSLAKEVQDLKAK----QNDQVSFASLVEELKKVIHEKDG 808

Query:   263 KVAEIESQ-GLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSXXXXXXXXXXXXXXX--- 318
             K+  +E     EL ++ N+ E  +++L+     L +++  +                   
Sbjct:   809 KIKSVEELLEAELLKVANK-EKTIQDLKQEIEALKEEIGNIQLEKAQQLSITSQVQELQN 867

Query:   319 ---GNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVK 375
                G  +Q    +++   +E D+    R     ++ + +    +    ++  Q K +E  
Sbjct:   868 LLKGKEEQMNNMKTVLEEKEKDLHNRGRR----LQDLQEENESLKTHVQEFAQHKFQEAC 923

Query:   376 SLN--EAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVA-ENGLREAGID-FKF 431
             S +  E +  ++KEKE+ +  L + L +R S D SSKT  L +V  EN L ++ I+  K 
Sbjct:   924 SASQFEELQIVLKEKENEMKRLETMLKERES-DLSSKTKLLQEVQDENKLFKSQIEELKQ 982

Query:   432 SKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKA 470
                      P  ++    +   E EI +L   L+++  A
Sbjct:   983 QNYQQASSFPPHEELLKVISEREKEITDLKNELDSLKDA 1021

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|F1LMV6 Dsp "Protein Dsp" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 98/454 (21%), Positives = 191/454 (42%)

Query:    41 RERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALRE-KEEILRSNDKLS 99
             R +Q+ E A  +  + +++  RLKA   E  KRR E   +  +      EEI+   +K  
Sbjct:  1315 RHKQSLEEAAKTIQDKNKEIERLKAEYQEEAKRRWEYENELSKVRNSYDEEIISLRNKFE 1374

Query:   100 TEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKIS 159
             TEI   NI K  + +   +  +   G R+Q+D +T+    L  E++   + L    E + 
Sbjct:  1375 TEI---NITKTTIHQLTMQKEEDTSGYRAQIDNLTRENRSLSEEVKRLKNTLAQTTENLR 1431

Query:   160 GKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQME 219
                 N +   A G   SQ+   L   +  V +   E        +D  AK+  D  +++E
Sbjct:  1432 RVEENVQQQKASGSEMSQRKQQLEIELRQVSQMRTEESMRYKQSLDDAAKTIQDKNKEIE 1491

Query:   220 QRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVN 279
             +    +  E +E +     L +E +K      +L+K+     E +++++ Q  EL +L  
Sbjct:  1492 RLKQLVDKETNERKC----LEDENSKLQRVQYDLQKANNSATEAMSKLKVQEQELTRLRI 1547

Query:   280 EYEDKLKNLESHRPLLVDQLNYV--SXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETD 337
             +YE     +   R +    +  +  S                 L ++   ES    +   
Sbjct:  1548 DYE----RVSQERTVKDQDITRIQSSLKDLQLQKQKAEEELSRLKRTASDES---SKRKM 1600

Query:   338 MEENIRASLAGM-ESIYQLTRIVVE-KTRDLVQKKSRE-VKSLNEAVGQLVKEKEHIVSL 394
             +EE + A    + E   ++T +  + +   +V+K+S + ++   + +   V+EK+     
Sbjct:  1601 LEEELEAMRRSLKEQAVKITNLTQQLEQASIVKKRSEDDLRQQRDVLDGHVREKQRTQEE 1660

Query:   395 LRSALSKRMSVDPSSKTNELFKVAENGLREAGI-DFKFSKLLSDGKVPVSDDKANAMETE 453
             LR     R+S+D  +   +L +  EN +++A + +  F K + D    +++ K   +E  
Sbjct:  1661 LR-----RLSLDVEALRRQLVQEQEN-VKQAHLRNEHFQKAIEDKSRSLNESKIE-IERL 1713

Query:   454 EDEIYNLAGA---LENIVKASQLEIVELRHSVEE 484
             +    NL      LE  ++  +LE  +LR    E
Sbjct:  1714 QSLTENLTKEHLMLEEELRNLRLEYDDLRRGRSE 1747

GO:0001533 "cornified envelope" evidence=IEA

GO:0002934 "desmosome organization" evidence=IEA

GO:0003223 "ventricular compact myocardium morphogenesis" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005882 "intermediate filament" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0018149 "peptide cross-linking" evidence=IEA

GO:0030057 "desmosome" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0034332 "adherens junction organization" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0045109 "intermediate filament organization" evidence=IEA

GO:0071896 "protein localization to adherens junction" evidence=IEA

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=IEA

GO:0086069 "bundle of His cell to Purkinje myocyte communication" evidence=IEA

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=IEA

GO:0097110 "scaffold protein binding" evidence=IEA

DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]

 Score = 173 (66.0 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 96/485 (19%), Positives = 212/485 (43%)

Query:     7 DAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRE-RQAREAAENSATELSEKFNRLKA 65
             D+++ + + ++   T S++D S++  +  L E   E  +  E  ++S+ EL  K N  + 
Sbjct:   810 DSIIIENQEKLVQLTKSNQD-SLDELQSKLNEKQNEINELIENNQSSSNELQSKLNEKQN 868

Query:    66 LAHESIKRRDESTRQRDEALREK-EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARD 124
               +  I+    S+ +    L EK +EI     KL+ +  ++N    E+V+  +  +    
Sbjct:   869 EINLLIENNQSSSDELQSKLNEKHQEINELQSKLNEKQNKIN----ELVENNESSSDELQ 924

Query:   125 GSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPA 184
                 QL +  + K+      E+S       + ++  K++  +N     +  + + + L  
Sbjct:   925 SKLIQLSDQLQEKENQLKSFESSIIERDEKLNQLQSKLNEKQN-EIDQITENNQ-SSLDE 982

Query:   185 VVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVA 244
             +   + ++ NEI + +     +  + ++ + E++ + N E   +++EL  T   L ++  
Sbjct:   983 LQSNLNEKQNEINQLIENNQSSLDELQSKLNEKLNEIN-EKDNKINELIQTNESLSKD-- 1039

Query:   245 KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE----SHRPLLVDQLN 300
             ++S F ENLE+ L EK+ K+ ++ SQ +++    +E E++L  L+         + +Q N
Sbjct:  1040 QQSKF-ENLEQELEEKNNKILDLNSQIIDVNHQFSEKENELNQLQLKLIEKDQEIENQNN 1098

Query:   301 YVSXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVV 360
              +                 N + +   E++ L +E      ++  L  +E+   L +  V
Sbjct:  1099 KIIDINNQLNEKEKEININNDNDNNNEENIQLIEE------LKEKLQDLENELNLEKDTV 1152

Query:   361 EKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSK-RMSVDPSSKTNELFKVAE 419
              +  D + +   E+K ++E + +  +E   +++    +L++     D     NE    A 
Sbjct:  1153 NEKNDDINELKEEIKLISEKLSEKEQELNEMINDYDESLNEINDQKDLVKSLNERLTNAH 1212

Query:   420 NGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELR 479
               + E   D +   L  +G   +   + N +  +  E  NL      I+  S LE+ +LR
Sbjct:  1213 LKINEK--DNEIHSLSKEGFNEIQS-QLNLITNQLSEKDNLLIEKSQII--SDLEL-QLR 1266

Query:   480 HSVEE 484
              S +E
Sbjct:  1267 ESYKE 1271

GO:0005543 "phospholipid binding" evidence=IEA

CGD|CAL0001468 SYS3 [Candida albicans (taxid:5476)]

 Score = 170 (64.9 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 94/454 (20%), Positives = 210/454 (46%)

Query:    18 DVQTSSDEDFSVERFR-EVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDE 76
             D  T  D +  +  +  +  ++L   ++ +E  + +  E  EK    K  + + ++++ +
Sbjct:   407 DSTTKEDTNTQINDWELKYNSQLKENKELKEELDVATKESKEKEKERKK-SEDQLRKQIQ 465

Query:    77 STRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKA 136
             + +Q+ E+   K E   S  K   ++  ++  K+++ K++ E++K +    S   E++  
Sbjct:   466 TLKQKLESTENKFE---SKTK---DLKNLSEEKEKLEKRISELSKFKSNDSSLKLEISSL 519

Query:   137 KDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEI 196
             K  L ++ +NS + L T ++++  K SN K+ ++     S+    L +     +K  NE+
Sbjct:   520 KSSLTNK-DNSINELKTQVDEL--KQSN-KSLNSKVEELSKSNNELQSNSMDFLKDKNEL 575

Query:   197 VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKS-------SF 249
             + +    ++ T KS N    +++Q   ++   ++ELE T + L   +A KS       S+
Sbjct:   576 LTKQEVLMENT-KSLNSQVTKLQQEKQDV---ITELEKTKNKLDIVIADKSQSANDMLSY 631

Query:   250 IENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSXXXXXX 309
              +  E+ +++  E    IES   +L +  N  +++ +   + R LLVD    +       
Sbjct:   632 KKQHEELMMKSKEYSLRIESLEDDLTEARNLLQERTRETSNMRRLLVDAEEMLKQQKQDS 691

Query:   310 XXXXXXXXXGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLV-- 367
                         +    + SL   ++ +++E ++      ES+ +  ++ VEK  + V  
Sbjct:   692 KLEIARALEDKAEIERNNASLIKRKQRELDE-LK------ESVQEY-KLKVEKLENKVMT 743

Query:   368 -QKKSREVKSLN-EAVGQLVKEKEHIVSLLRSALSKRMSV--DPSSKTNELFKVAE-NGL 422
              +K+ +  +SL+ +   Q+ KE    +  LR+AL+   +   D  +  N L K++E N L
Sbjct:   744 FEKEEKSKESLSTDNQTQMSKELSSTIETLRTALNNSTNKIRDLENYNNNLKKLSEDNTL 803

Query:   423 REAGIDFKFSKLLSDGKVPVSDDKANAMETEEDE 456
             R   +   + K+L+     + + K +   T++D+
Sbjct:   804 RFERLSKNY-KILNQQYQYMKERKGSESSTKQDK 836

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.30420001 hypothetical protein (487 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	490
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 59/274 (21%), Positives = 125/274 (45%), Gaps = 14/274 (5%)

Query: 30  ERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKE 89
           E   E+ A+L +  +  ++ +N    L +    L+    E  ++ +E  R+      E E
Sbjct: 674 EELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELE 733

Query: 90  EILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSA- 148
           ++    ++L  E+ E+    +E+ ++L+E+         +L+ + +A   L+ EIE    
Sbjct: 734 QLQSRLEELEEELEELEEELEELQERLEEL-------EEELESLEEALAKLKEEIEELEE 786

Query: 149 --HMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDA 206
               L   +E++  ++   +          +        +   I+   E +EEL  ++D 
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846

Query: 207 TAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE 266
             +   ++ +++E    E+  E+ ELEA    L +E+ +     E LE+ L E + ++AE
Sbjct: 847 LEEELEELEKELE----ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902

Query: 267 IESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300
           ++ +  +LR+ + E E KL+ LE   P L ++L 
Sbjct: 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 71/380 (18%), Positives = 159/380 (41%), Gaps = 30/380 (7%)

Query: 46  REAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEV 105
           +E AE       E   RL+ L  E  K+ ++  RQ ++A R +E      +    E+A +
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQE---LKAELRELELALL 230

Query: 106 NIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV------------- 152
                E+ K+L+E+ +       +L+E+ +  +    EIE     L              
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290

Query: 153 ----TGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATA 208
                 IE++ G++S  +          ++       +   I+   E +EE    ++   
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 209 KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268
           +   ++ E  E+   +++  + ELE     LREE+A+  + +  +   L E   ++  +E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 269 SQGLELRQLVNEYEDKLK----NLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQS 324
            +   L + + + +++LK     LE  +  L +    + ++ +Q++++   + +   + +
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Query: 325 GLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQL 384
            L E L   +      ++ A L  +E+  + ++ V    R +++     +  +   V +L
Sbjct: 471 ELQEELQ--RLEKELSSLEARLDRLEAEQRASQGV----RAVLEALESGLPGVYGPVAEL 524

Query: 385 VKEKEHIVSLLRSALSKRMS 404
           +K KE   + L +AL  R+ 
Sbjct: 525 IKVKEKYETALEAALGNRLQ 544

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 49/320 (15%), Positives = 126/320 (39%), Gaps = 21/320 (6%)

Query: 33  REVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEIL 92
           R   AEL R R+  E  +   + L  +  R++    E  +   +++R+  E  +E E++ 
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 93  RSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIEN-SAHML 151
           +  +KL   + E+      + ++++ V        ++++E+ +    L   + +  A + 
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789

Query: 152 VTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSR 211
            + I +I  ++S  +          ++ + + A +  + ++ N +  E         + +
Sbjct: 790 HSRIPEIQAELSKLE----------EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839

Query: 212 NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQG 271
               +  EQ    I  E+  L      L EE+ +  + + +LE  L +  ++  E+E+Q 
Sbjct: 840 EQRIDLKEQIK-SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898

Query: 272 LELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLF 331
            EL + + E E +++        L  +L  + +   +++D                    
Sbjct: 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG---------EDEEIPEE 949

Query: 332 LPQETDMEENIRASLAGMES 351
                D++  ++     + +
Sbjct: 950 ELSLEDVQAELQRVEEEIRA 969

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 42/246 (17%), Positives = 97/246 (39%), Gaps = 29/246 (11%)

Query: 38  ELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDK 97
           EL    +  E  ++   EL E+   L+    E  +R +E   + +       ++    ++
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 98  LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEK 157
           L  +   +    +E+ ++L+E  +  D    +L+ + + ++ L  EIE     +    EK
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843

Query: 158 ISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQ 217
           +                               ++   + +EEL  +++     + ++ ++
Sbjct: 844 LDELEEE-------------------------LEELEKELEELKEELEELEAEKEELEDE 878

Query: 218 MEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQL 277
           +++   E      ELE  +  L  E+A+    IE L + L E + K+  +E +  EL + 
Sbjct: 879 LKELEEEKE----ELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEE 934

Query: 278 VNEYED 283
           + E  +
Sbjct: 935 LEEEYE 940

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 52/263 (19%), Positives = 111/263 (42%), Gaps = 5/263 (1%)

Query: 29  VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREK 88
            E   E+  EL    +  E       EL EK   L+    E  +  +E  ++      E 
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297

Query: 89  EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSA 148
             + +    L   +A +    +E+  QL+E+    D    +L E+ +  + L+ E+E+  
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357

Query: 149 HMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATA 208
             L    E++  ++   ++       + +      A +   I   N  +E L  +++   
Sbjct: 358 AEL----EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

Query: 209 KSRNDVREQMEQRNFEIA-IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267
             R  +++++E+   ++   E+ EL+A +  L EE+ +    +E LE++L E  E++ E 
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473

Query: 268 ESQGLELRQLVNEYEDKLKNLES 290
           E       + + + + +L +LE 
Sbjct: 474 EQALDAAERELAQLQARLDSLER 496

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 59/312 (18%), Positives = 137/312 (43%), Gaps = 23/312 (7%)

Query: 40  NRERQAREAAENSATELSEKFNRLKAL---AHESIKRRDESTRQRDEALREK----EEIL 92
           +R +++  A +    EL E+   L+A      E +K      R  ++ L E     EE+ 
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 93  RSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV 152
           R  ++L  E+A +    +++  +L+E+ +  +    +L+E+ +  + L  E+E+    L 
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL- 774

Query: 153 TGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRN 212
             +++   ++   +      L   ++           ++     ++ L  ++++  + R 
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEE----------ELEEAERRLDALERELESLEQRRE 824

Query: 213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGL 272
            + +++E+   EI     ELE  +  L EE+ +    +E L++ L E + +  E+E +  
Sbjct: 825 RLEQEIEELEEEIE----ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880

Query: 273 ELRQLVNEYEDKLKNLESHRPLLVDQ-LNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLF 331
           EL +   E E++L+ LES    L ++      ++ +    + ++  +    +  L E   
Sbjct: 881 ELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYE 940

Query: 332 LPQETDMEENIR 343
              ET++E  I 
Sbjct: 941 DTLETELEREIE 952

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	490
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.32
PHA02562	562	46 endonuclease subunit; Provisional	96.73
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.67
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.52
PRK02224	880	chromosome segregation protein; Provisional	96.38
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.62
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.58
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.14
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.04
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.0
PRK11637	428	AmiB activator; Provisional	94.83
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.09
PRK02224	880	chromosome segregation protein; Provisional	93.95
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	93.93
PRK04863	1486	mukB cell division protein MukB; Provisional	92.93
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	92.7
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	91.85
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	91.75
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	90.76
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	90.71
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	89.41
PRK09039	343	hypothetical protein; Validated	88.99
PF00038	312	Filament: Intermediate filament protein; InterPro:	88.58
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.96
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	87.42
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.78
PF04065	233	Not3: Not1 N-terminal domain, CCR4-Not complex com	86.32
PRK04778	569	septation ring formation regulator EzrA; Provision	85.47
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	84.81
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	84.41
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	83.56
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	83.52
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	83.45
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	83.3
PRK11637	428	AmiB activator; Provisional	82.89
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	82.26
KOG0996	1293	consensus Structural maintenance of chromosome pro	81.04
KOG0971	1243	consensus Microtubule-associated protein dynactin	80.65
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	80.45
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	80.36

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.32  E-value=0.55  Score=54.44  Aligned_cols=112  Identities=22%  Similarity=0.373  Sum_probs=79.0

Q ss_pred             hhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 011223          189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE  268 (490)
Q Consensus       189 v~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele  268 (490)
                      -+.+++.-+..+-.++......++.+..+|++-.-    +...+++.+..++.++..-....+.+...+......+..++
T Consensus       801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  876 (1163)
T COG1196         801 ELEEAERRLDALERELESLEQRRERLEQEIEELEE----EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE  876 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666667777766666666666665443    34578888888888888888888888888888888888888


Q ss_pred             HhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHh
Q 011223          269 SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK  304 (490)
Q Consensus       269 ~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~  304 (490)
                      ..+..+++....++..++.++....-+-.++..+..
T Consensus       877 ~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  912 (1163)
T COG1196         877 DELKELEEEKEELEEELRELESELAELKEEIEKLRE  912 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888877777555555554444433

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.73  E-value=0.94  Score=47.12  Aligned_cols=95  Identities=13%  Similarity=0.243  Sum_probs=56.3

Q ss_pred             HHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 011223          187 YGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE  266 (490)
Q Consensus       187 ygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~e  266 (490)
                      .+.+...++...++=.|++.......+..+++++++        ++...+..++..+..+.+.++.+.+....-+.+|..
T Consensus       298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~--------~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~  369 (562)
T PHA02562        298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN--------EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE  369 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677777888888888888888887777777443        445556566655555555555554444444555554


Q ss_pred             HHHhHHHHHHHHHHHHHHhhhhh
Q 011223          267 IESQGLELRQLVNEYEDKLKNLE  289 (490)
Q Consensus       267 le~E~~~lKe~V~e~E~kl~~lE  289 (490)
                      ++.+..++-+.+..++.++.++.
T Consensus       370 l~~~~~~~~~~l~~l~~~l~~~~  392 (562)
T PHA02562        370 LQAEFVDNAEELAKLQDELDKIV  392 (562)
T ss_pred             HHhhhhchHHHHHHHHHHHHHHH
Confidence            54444444444444444443333

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.67  E-value=1.4  Score=48.55  Aligned_cols=30  Identities=13%  Similarity=0.116  Sum_probs=18.1

Q ss_pred             HHHHhhHHHHHHHHHHhhhhHHHHHHHHhh
Q 011223          371 SREVKSLNEAVGQLVKEKEHIVSLLRSALS  400 (490)
Q Consensus       371 kkE~keLE~sV~~L~kEneDI~sLLRsALs  400 (490)
                      .....+|......|.+.-..|....+.-..
T Consensus       999 ~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~ 1028 (1179)
T TIGR02168       999 KERYDFLTAQKEDLTEAKETLEEAIEEIDR 1028 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666666666666655553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.52  E-value=2  Score=48.97  Aligned_cols=184  Identities=18%  Similarity=0.245  Sum_probs=116.9

Q ss_pred             cchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 011223           95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP  174 (490)
Q Consensus        95 ~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP  174 (490)
                      .|+.-+.+..++.-+|..++.++..-+.-+..-.+++-.-..++....+|..-.-||                 -..|+|
T Consensus       109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L-----------------~~~g~~  171 (775)
T PF10174_consen  109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML-----------------QSKGLS  171 (775)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhcCCc
Confidence            444445555555666666666555443322222333333334444555555555554                 133444


Q ss_pred             CCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHH
Q 011223          175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLE  254 (490)
Q Consensus       175 ~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~  254 (490)
                      ..  -.+=..++.|-|-..+-.+-.|-..+....+.++.+|++|.+|+ +.                  ..-++.-+.+.
T Consensus       172 ~~--~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~-~~------------------~~~~a~t~alq  230 (775)
T PF10174_consen  172 AE--AEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL-QM------------------ERDDAETEALQ  230 (775)
T ss_pred             cc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hc------------------CCCchhHHHHH
Confidence            31  11223456677778888888898899999999999999987765 32                  23344555778


Q ss_pred             HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHh
Q 011223          255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV  316 (490)
Q Consensus       255 ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~v  316 (490)
                      +-+..||.+|+.+|+-+..+.+-|..|...+......|..+..++....+-...+-+=++.+
T Consensus       231 ~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~  292 (775)
T PF10174_consen  231 TVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRL  292 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            88999999999999988888888877766665555778888888887776666654444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK02224 chromosome segregation protein; Provisional

Probab=96.38  E-value=2.2  Score=47.24  Aligned_cols=96  Identities=20%  Similarity=0.218  Sum_probs=48.8

Q ss_pred             hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH-------HHHHHHhhhhhhhchhHHHHhhhHHhHHHH
Q 011223          236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV-------NEYEDKLKNLESHRPLLVDQLNYVSKIHDQ  308 (490)
Q Consensus       236 is~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V-------~e~E~kl~~lE~qr~lL~dql~svs~Ihd~  308 (490)
                      +..++.+++...+.++.+...+...+..+..++.+++.++..+       ..|+..+..++....-|.+.++.+......
T Consensus       358 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~  437 (880)
T PRK02224        358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT  437 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444555555544555555555444444444       345555555555555555666666665565


Q ss_pred             HHHHHHHhc---CCCccccccccccCCC
Q 011223          309 VDDIIKIVD---DGNLDQSGLSESLFLP  333 (490)
Q Consensus       309 L~~vi~~vd---d~k~~~s~LsEs~f~~  333 (490)
                      +...++.+.   .+..  --+|.+.|-+
T Consensus       438 ~~~~l~~~~~~l~~~~--Cp~C~r~~~~  463 (880)
T PRK02224        438 ARERVEEAEALLEAGK--CPECGQPVEG  463 (880)
T ss_pred             HHHHHHHHHHHHhccc--CCCCCCcCCC
Confidence            666655554   2222  2455555544

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.62  E-value=4.7  Score=44.64  Aligned_cols=8  Identities=25%  Similarity=0.588  Sum_probs=3.2

Q ss_pred             HHHHHHHH
Q 011223          307 DQVDDIIK  314 (490)
Q Consensus       307 d~L~~vi~  314 (490)
                      +.+.+++.
T Consensus       506 ~~v~~~i~  513 (1179)
T TIGR02168       506 EGVKALLK  513 (1179)
T ss_pred             hHHHHHHh
Confidence            33444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.58  E-value=7.6  Score=46.75  Aligned_cols=219  Identities=18%  Similarity=0.254  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhh
Q 011223           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIA  108 (490)
Q Consensus        29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~  108 (490)
                      ..+|+.-+||.++=.+.-..|..+.+|.+.+-.|.       +-+=.-..-|-+++                     |+-
T Consensus      1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~-------~~~a~as~~q~~~s---------------------~~e 1472 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRA-------LEQANASRSQMEES---------------------NRE 1472 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHH---------------------HHH
Confidence            45677777777777777777777777766554332       22211111111121                     112


Q ss_pred             HHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCc----ccCCchh
Q 011223          109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ----KYTGLPA  184 (490)
Q Consensus       109 ~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~Sq----KYtGL~A  184 (490)
                      -+.+.+|+-+.+-+-+-+-+++.+++.  .-|..||-....-+-.=..+|--.|...+|. -+=|-++-    .-.-|++
T Consensus      1473 l~~Li~~v~~Flt~~~adp~si~~vA~--~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nV-d~IL~~T~~di~ra~~L~s 1549 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLTQPDADPDSIEEVAE--EVLALELPLTPEQIQQLTGEIQERVASLPNV-DAILSRTKGDIARAENLQS 1549 (1758)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHHHHHhcccH-HHHHHhhhhhHHHHHHHHH
Confidence            233455666666666666666666655  3466677776666665566666666655553 11122220    1124555


Q ss_pred             HHHHhhhchhHH---HHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhH
Q 011223          185 VVYGVIKRTNEI---VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKD  261 (490)
Q Consensus       185 iaygv~KRtnei---veell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke  261 (490)
                      .|---=|++.++   +|+++.-+..|.++-+.|..-|.|-+           +.|..-++-+++--.+....|+-+.---
T Consensus      1550 ~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~-----------~~~~~a~~~l~kv~~~t~~aE~~~~~a~ 1618 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD-----------RDIRLAQQLLAKVQEETAAAEKLATSAT 1618 (1758)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555544555443   45556666667777777777666544           2333444444444444444455566667


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223          262 EKVAEIESQGLELRQLVNEYEDKLKNLE  289 (490)
Q Consensus       262 ~~i~ele~E~~~lKe~V~e~E~kl~~lE  289 (490)
                      ..+.+|++-|+.||-+...-....++++
T Consensus      1619 q~~~eL~~~~e~lk~~~~qns~~A~~a~ 1646 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKHKAAQNSAEAKQAE 1646 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            7788888878888777755544444444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.14  E-value=9.8  Score=45.61  Aligned_cols=153  Identities=22%  Similarity=0.286  Sum_probs=94.9

Q ss_pred             hcccCCCCCCCCCC-CCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhh
Q 011223          159 SGKVSNFKNFSAGG-LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS  237 (490)
Q Consensus       159 s~k~s~~k~f~~~~-lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis  237 (490)
                      ||..++--+-..+| .-++.--||.-..+---+-|+-.-+.+..+|+-..--.=++..-+...|--+.-+..+.|++++.
T Consensus       751 SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k  830 (1293)
T KOG0996|consen  751 SGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVK  830 (1293)
T ss_pred             cccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHH
Confidence            44444433222333 44444356766666666666666666666666555444455555555566666677777777776


Q ss_pred             hchHHHhhhhhhHHHHHHH----------HHHhHHHHHHHHHhHHHH-----H-HHHHHHHHHhhhhhhhchhHHH-Hhh
Q 011223          238 GLREEVAKKSSFIENLEKS----------LIEKDEKVAEIESQGLEL-----R-QLVNEYEDKLKNLESHRPLLVD-QLN  300 (490)
Q Consensus       238 ~lr~eva~kss~~e~l~ks----------~~eke~~i~ele~E~~~l-----K-e~V~e~E~kl~~lE~qr~lL~d-ql~  300 (490)
                      ++-..++--.+-+-.+|+.          +.++.+.|+++++|++++     | ++|.+|-.++   +.-.+.++. |=.
T Consensus       831 ~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i---~~i~~e~~q~qk~  907 (1293)
T KOG0996|consen  831 RLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKI---DEIGGEKVQAQKD  907 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHhhchhhHHhHH
Confidence            6666444433333344433          345577799999999998     5 8888888888   544444444 777


Q ss_pred             hHHhHHHHHHHHHH
Q 011223          301 YVSKIHDQVDDIIK  314 (490)
Q Consensus       301 svs~Ihd~L~~vi~  314 (490)
                      .+.+++++|..+-.
T Consensus       908 kv~~~~~~~~~l~~  921 (1293)
T KOG0996|consen  908 KVEKINEQLDKLEA  921 (1293)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877743

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.04  E-value=9.5  Score=44.65  Aligned_cols=51  Identities=27%  Similarity=0.356  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 011223           37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALRE   87 (490)
Q Consensus        37 ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~   87 (490)
                      |-+-.=..-++-|+..+...+.+++|+..+.++.=++-+.+.+|+..|.+-
T Consensus       165 aGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y  215 (1163)
T COG1196         165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERY  215 (1163)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566788899999999999999999999999999999999998775

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.00  E-value=7.7  Score=43.39  Aligned_cols=51  Identities=6%  Similarity=0.207  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHH
Q 011223           30 ERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQ   80 (490)
Q Consensus        30 ~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~   80 (490)
                      ..+..+..+++.-...-...+.....++..+..++.-...+-+....+..+
T Consensus       674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~  724 (1164)
T TIGR02169       674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE  724 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555444444455555555555555555444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK11637 AmiB activator; Provisional

Probab=94.83  E-value=1.4  Score=45.48  Aligned_cols=85  Identities=15%  Similarity=0.260  Sum_probs=47.5

Q ss_pred             HHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 011223          197 VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQ  276 (490)
Q Consensus       197 veell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe  276 (490)
                      --+++.++..+.+.-...+.+++..-=+..-...++++....|....+.+......|++.....+..+.+++++...|..
T Consensus       168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~  247 (428)
T PRK11637        168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD  247 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444333333444455556665666666666666777766666666667666666666655


Q ss_pred             HHHHH
Q 011223          277 LVNEY  281 (490)
Q Consensus       277 ~V~e~  281 (490)
                      .+.++
T Consensus       248 ~I~~l  252 (428)
T PRK11637        248 SIARA  252 (428)
T ss_pred             HHHHH
Confidence            55544

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.09  E-value=22  Score=44.70  Aligned_cols=37  Identities=16%  Similarity=0.236  Sum_probs=24.3

Q ss_pred             HHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 011223          242 EVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV  278 (490)
Q Consensus       242 eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V  278 (490)
                      -..+..++...|.+++.+.+.+++.+.+....+...+
T Consensus      1267 q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~ql 1303 (1930)
T KOG0161|consen 1267 KRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQL 1303 (1930)
T ss_pred             HHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566777888888888888887777333333333

>PRK02224 chromosome segregation protein; Provisional

Probab=93.95  E-value=13  Score=41.49  Aligned_cols=47  Identities=19%  Similarity=0.302  Sum_probs=21.9

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhh
Q 011223           98 LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEI  144 (490)
Q Consensus        98 ~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei  144 (490)
                      +...|.++....+++..++.++....++-...|++....++.++.++
T Consensus       382 ~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~  428 (880)
T PRK02224        382 RREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE  428 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555554444333333444444444445554443

>TIGR00606 rad50 rad50

Probab=93.93  E-value=18  Score=43.04  Aligned_cols=114  Identities=12%  Similarity=0.193  Sum_probs=79.0

Q ss_pred             hHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 011223          194 NEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE  273 (490)
Q Consensus       194 neiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~  273 (490)
                      ...+..+-+.++.+.+..+.+....           .++|..++.++.++......++...+.+.+ +            
T Consensus       576 ~~~~~~~~~el~~~~~~~~~~~~el-----------~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~------------  631 (1311)
T TIGR00606       576 EDWLHSKSKEINQTRDRLAKLNKEL-----------ASLEQNKNHINNELESKEEQLSSYEDKLFD-V------------  631 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C------------
Confidence            6677777777888888777776654           678888888888888777776666555541 1            


Q ss_pred             HHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHh--cCCCccccccccccCCCcc
Q 011223          274 LRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV--DDGNLDQSGLSESLFLPQE  335 (490)
Q Consensus       274 lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~v--dd~k~~~s~LsEs~f~~~e  335 (490)
                        .-+..|+..|..++..-......++.+..+...+...+...  ..++.  -.||..-|.+.+
T Consensus       632 --~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~--C~LC~R~f~~ee  691 (1311)
T TIGR00606       632 --CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSC--CPVCQRVFQTEA  691 (1311)
T ss_pred             --CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc--CCCCCCCCCChh
Confidence              12345666666666666667777788888888888888888  44444  578888887433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK04863 mukB cell division protein MukB; Provisional

Probab=92.93  E-value=9.9  Score=46.33  Aligned_cols=30  Identities=7%  Similarity=0.100  Sum_probs=17.3

Q ss_pred             hhchhHHHHHHHHhhhhhhhhhhHHHHHhh
Q 011223          190 IKRTNEIVEELVGQIDATAKSRNDVREQME  219 (490)
Q Consensus       190 ~KRtneiveell~Qida~~ksrn~aReQme  219 (490)
                      +.|.++|+.++-.++..-.+.+..|+...+
T Consensus       309 L~rI~diL~ELe~rL~kLEkQaEkA~kyle  338 (1486)
T PRK04863        309 LVEMARELAELNEAESDLEQDYQAASDHLN  338 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666666655555433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=92.70  E-value=20  Score=40.18  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHH
Q 011223           30 ERFREVLAELNRERQAREAAENSATELSEKFNRLKAL   66 (490)
Q Consensus        30 ~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkal   66 (490)
                      .++..+.++++.-+.....++.....+......+..-
T Consensus       681 ~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~  717 (1164)
T TIGR02169       681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK  717 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555444444444555555555554444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=91.85  E-value=34  Score=40.79  Aligned_cols=54  Identities=13%  Similarity=0.161  Sum_probs=27.7

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHh
Q 011223           67 AHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVT  120 (490)
Q Consensus        67 a~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~  120 (490)
                      ..+.+..|..+..+-++-..+.++.-..-..+..+|..+....+..+..++++.
T Consensus       876 l~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  929 (1311)
T TIGR00606       876 IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI  929 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            344566666666666655555444444444444455544444444555554433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=91.75  E-value=18  Score=37.58  Aligned_cols=187  Identities=20%  Similarity=0.265  Sum_probs=102.9

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCC---CCCCCCCC--
Q 011223           98 LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSN---FKNFSAGG--  172 (490)
Q Consensus        98 ~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~---~k~f~~~~--  172 (490)
                      |-.|+.-+...++-+.+.++.+..+       |-.--.++..|...+.  -++-.-+|+.....+.|   .-+|.|++  
T Consensus       121 L~kE~~li~~~~~lL~~~l~~~~eQ-------l~~lr~ar~~Le~Dl~--dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r  191 (384)
T PF03148_consen  121 LLKEVELIENIKRLLQRTLEQAEEQ-------LRLLRAARYRLEKDLS--DKFEALEIDTQCLSLNNNSTNISYKPGSTR  191 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCccCCCcccCCccc
Confidence            3445555555566666666665544       1112222233333332  23333445554444433   22233322  


Q ss_pred             -CCCCcccCCchhHHHHhhhchhHHHHHH---HHhhhhh-hhhhhHHHHH-------hhhhcceeeeeehhhHHhhhhch
Q 011223          173 -LPRSQKYTGLPAVVYGVIKRTNEIVEEL---VGQIDAT-AKSRNDVREQ-------MEQRNFEIAIEVSELEATISGLR  240 (490)
Q Consensus       173 -lP~SqKYtGL~Aiaygv~KRtneiveel---l~Qida~-~ksrn~aReQ-------meqrny~IAIEVSqLEAsis~lr  240 (490)
                       -|.+.-|.-+...++..|.++..-+..-   -..|+.+ ...+++.+.|       +.+|=|+.--=-.+||-......
T Consensus       192 ~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~  271 (384)
T PF03148_consen  192 IPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTL  271 (384)
T ss_pred             ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence             2444455566667777777765443221   1112211 1223333333       34444555455568888888888


Q ss_pred             HHHhhhhhhHHHHHHHHHHhHHHHHHHHH------------------------hHHHHHHHHHHHHHHhhhhhhhch
Q 011223          241 EEVAKKSSFIENLEKSLIEKDEKVAEIES------------------------QGLELRQLVNEYEDKLKNLESHRP  293 (490)
Q Consensus       241 ~eva~kss~~e~l~ks~~eke~~i~ele~------------------------E~~~lKe~V~e~E~kl~~lE~qr~  293 (490)
                      +|++.=...++.|++++.+|++-+.-.+.                        ||..|++.+..|..+|..++....
T Consensus       272 ~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~  348 (384)
T PF03148_consen  272 QEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQ  348 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876543333                        888888888888877766664333

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=90.76  E-value=56  Score=41.35  Aligned_cols=236  Identities=22%  Similarity=0.295  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHH
Q 011223           31 RFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKD  110 (490)
Q Consensus        31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~d  110 (490)
                      .+.++--+|+.|-+++-+..+...-++-.++.|+---.+....+.+..++--.+.-+   +....-|+.+.+.+.....+
T Consensus      1302 qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e---~~~~~~k~e~~~~~~~eele 1378 (1930)
T KOG0161|consen 1302 QLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAE---LAQWKKKFEEEVLQRLEELE 1378 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            344555667888888888888888888888887777777777777555543332221   11222233333333333344


Q ss_pred             HHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccCCchhHHHHhh
Q 011223          111 EVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVI  190 (490)
Q Consensus       111 e~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~  190 (490)
                      ++.|.+-.-+-.       +.+........-..++.+.+=|-.+++...=.+...... +.-|-.-||  +    -.+.+
T Consensus      1379 e~kk~l~~~lq~-------~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~-~~~le~k~k--~----f~k~l 1444 (1930)
T KOG0161|consen 1379 ELKKKLQQRLQE-------LEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAA-VAALEKKQK--R----FEKLL 1444 (1930)
T ss_pred             HHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHH--H----HHHHH
Confidence            443333221111       111111111122222222222222222222111000000 000111111  0    13455


Q ss_pred             hchhHHHHHHHHhhhhhhhhhhHHHHHhhh---hcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 011223          191 KRTNEIVEELVGQIDATAKSRNDVREQMEQ---RNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI  267 (490)
Q Consensus       191 KRtneiveell~Qida~~ksrn~aReQmeq---rny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~el  267 (490)
                      -..-..++++..-+|++.++=.. .+.+-+   +-|+.+++      .+-.++.+..+-.+.+++|..++.+....+.++
T Consensus      1445 ~e~k~~~e~l~~Eld~aq~e~r~-~~tel~kl~~~lee~~e------~~e~l~renk~l~~ei~dl~~~~~e~~k~v~el 1517 (1930)
T KOG0161|consen 1445 AEWKKKLEKLQAELDAAQRELRQ-LSTELQKLKNALEELLE------QLEELRRENKNLSQEIEDLEEQKDEGGKRVHEL 1517 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666788888888886543211 111222   23444443      566778899999999999999999999999888


Q ss_pred             HH-------hHHHHHHHHHHHHHHhhhhhh
Q 011223          268 ES-------QGLELRQLVNEYEDKLKNLES  290 (490)
Q Consensus       268 e~-------E~~~lKe~V~e~E~kl~~lE~  290 (490)
                      ++       +..+|+..++++++.++..++
T Consensus      1518 ek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1518 EKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            87       777888888888888755553

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=90.71  E-value=2.4  Score=37.73  Aligned_cols=71  Identities=25%  Similarity=0.379  Sum_probs=36.1

Q ss_pred             hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHH
Q 011223          230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS  303 (490)
Q Consensus       230 SqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs  303 (490)
                      +.|.+....++.++..-.+..+.....+...+....+   +=..|..-+.+++..+..|..||.+|.+||..+|
T Consensus        62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~---qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ls  132 (132)
T PF07926_consen   62 QQLREELQELQQEINELKAEAESAKAELEESEASWEE---QKEQLEKELSELEQRIEDLNEQNKLLHDQLESLS  132 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            3344444444444444444444444444333322221   1223444444444444456899999999998774

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=89.41  E-value=47  Score=38.40  Aligned_cols=147  Identities=23%  Similarity=0.316  Sum_probs=81.3

Q ss_pred             HHHHHHhhhHHHHHHHHHHHhhhh---------cCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCC
Q 011223          100 TEIAEVNIAKDEVVKQLDEVTKAR---------DGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSA  170 (490)
Q Consensus       100 ~~l~~v~~~~de~~kq~~~~~~~~---------~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~  170 (490)
                      ..|+..+.-++-++..|++. +.+         ++.+.++....-..+.|++++....--|-.-=+.+|..+|       
T Consensus       436 ~~lEea~~eker~~e~l~e~-r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s-------  507 (775)
T PF10174_consen  436 ETLEEALREKERLQERLEEQ-RERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLAS-------  507 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhh-------
Confidence            77778888888888777764 222         2223333333334455555554443322222222222222       


Q ss_pred             CCCCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhH
Q 011223          171 GGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFI  250 (490)
Q Consensus       171 ~~lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~  250 (490)
                      ++++   +++-+--..- .+--.++=++.|-+|++.            .+-|-++..++..||..+.+.++++.+-.++|
T Consensus       508 ~~~K---~~s~i~~l~I-~lEk~rek~~kl~~ql~k------------~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EV  571 (775)
T PF10174_consen  508 SQEK---KDSEIERLEI-ELEKKREKHEKLEKQLEK------------LRANAELRDRIQQLEQEVTRYREESEKAQAEV  571 (775)
T ss_pred             ccch---hhhHHHHHHH-HHHHhhhHHHHHHHHHHH------------HHhCHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222   2222222222 222223444566666666            22334667889999999999999999999999


Q ss_pred             HHHHHHHHH-------hHHHHHHHHHh
Q 011223          251 ENLEKSLIE-------KDEKVAEIESQ  270 (490)
Q Consensus       251 e~l~ks~~e-------ke~~i~ele~E  270 (490)
                      |.|-..+.+       |+.+|.+|+++
T Consensus       572 ERLl~~L~~~E~EK~~ke~ki~~Leke  598 (775)
T PF10174_consen  572 ERLLDILREAENEKNDKEKKIGELEKE  598 (775)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999765543       34455555554

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK09039 hypothetical protein; Validated

Probab=88.99  E-value=10  Score=39.01  Aligned_cols=153  Identities=14%  Similarity=0.187  Sum_probs=75.3

Q ss_pred             HhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhc---ceeeeeehhhHHhhhhchHHHhh-------hhhhHHHHHHHH
Q 011223          188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRN---FEIAIEVSELEATISGLREEVAK-------KSSFIENLEKSL  257 (490)
Q Consensus       188 gv~KRtneiveell~Qida~~ksrn~aReQmeqrn---y~IAIEVSqLEAsis~lr~eva~-------kss~~e~l~ks~  257 (490)
                      +-..+..+.+.+|=.|++++...|.++..+.....   -+.---..+|++.+...+...+.       =.+.++.|.+++
T Consensus        74 ~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql  153 (343)
T PRK09039         74 QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL  153 (343)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999999999988766321   01111122223333333333333       333444444444


Q ss_pred             HHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHH----HHHHHHhc-----CCCcccccccc
Q 011223          258 IEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV----DDIIKIVD-----DGNLDQSGLSE  328 (490)
Q Consensus       258 ~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L----~~vi~~vd-----d~k~~~s~LsE  328 (490)
                      ..-+..|.+.+....+.+.+++.|...|      +..|.+-..-+..+...+    .+++..-+     ++..  ..-++
T Consensus       154 a~le~~L~~ae~~~~~~~~~i~~L~~~L------~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~--~~~~~  225 (343)
T PRK09039        154 AALEAALDASEKRDRESQAKIADLGRRL------NVALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRF--VFQSE  225 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEE--EecCC
Confidence            4444444444444444444444444444      333333344444554444    33332211     1111  12345


Q ss_pred             ccCCCcccchhHHHHHHHhh
Q 011223          329 SLFLPQETDMEENIRASLAG  348 (490)
Q Consensus       329 s~f~~~etD~ee~lK~sL~g  348 (490)
                      .+|-+...++...-+..|..
T Consensus       226 vlF~~gsa~L~~~~~~~L~~  245 (343)
T PRK09039        226 VLFPTGSAELNPEGQAEIAK  245 (343)
T ss_pred             ceeCCCCcccCHHHHHHHHH
Confidence            77887777666555554443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=88.58  E-value=26  Score=34.31  Aligned_cols=88  Identities=22%  Similarity=0.263  Sum_probs=41.8

Q ss_pred             hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH----HHHHHHhhhhhhhchhHHHHhhhHHhH
Q 011223          230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV----NEYEDKLKNLESHRPLLVDQLNYVSKI  305 (490)
Q Consensus       230 SqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V----~e~E~kl~~lE~qr~lL~dql~svs~I  305 (490)
                      ..-...+..+|+|+..-...+..|...+..-..+...|++.+..+....    ..+...+..++..-.-|-..+.....=
T Consensus       205 ~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e  284 (312)
T PF00038_consen  205 EKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE  284 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence            3344445555666666555666665555555555555555443333222    334444444444444444444444444


Q ss_pred             HHHHHHHHHHhc
Q 011223          306 HDQVDDIIKIVD  317 (490)
Q Consensus       306 hd~L~~vi~~vd  317 (490)
                      |..|.++-..+|
T Consensus       285 y~~Ll~~K~~Ld  296 (312)
T PF00038_consen  285 YQELLDVKLALD  296 (312)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHH
Confidence            444555444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.96  E-value=8.9  Score=39.75  Aligned_cols=138  Identities=20%  Similarity=0.321  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHH----H
Q 011223           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIA----E  104 (490)
Q Consensus        29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~----~  104 (490)
                      .+++.+|..-||+=.+-|.--.+-+..+++.+..=|.=.-+.-..=--++|+..--+-.-+..-+.++||+.+|.    +
T Consensus        17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~q   96 (307)
T PF10481_consen   17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQ   96 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHH
Confidence            567788888887766666666667777777776666544444333333444444434444555577778888776    2


Q ss_pred             Hh---hhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccCC
Q 011223          105 VN---IAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTG  181 (490)
Q Consensus       105 v~---~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~SqKYtG  181 (490)
                      |+   +|-.-..+|++...-          +..+    +++|++.|-.-..+|--.++---.|-|+| +.|++.+|.|+|
T Consensus        97 v~~lEgQl~s~Kkqie~Leq----------elkr----~KsELErsQ~~~~~~~~sl~~~stpqk~f-~~p~tp~q~~~~  161 (307)
T PF10481_consen   97 VNFLEGQLNSCKKQIEKLEQ----------ELKR----CKSELERSQQAASSGDVSLNPCSTPQKSF-ATPLTPSQYYSD  161 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------HHHH----HHHHHHHHHHhhccCCccccccCCchhhc-cCCCChhhhhhh
Confidence            21   111222223322111          1233    78899988877777776677677788999 677777866654

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=87.42  E-value=29  Score=33.60  Aligned_cols=100  Identities=18%  Similarity=0.228  Sum_probs=70.1

Q ss_pred             HhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 011223          202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY  281 (490)
Q Consensus       202 ~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~  281 (490)
                      ..+...+..-.+++..|++|+|...==+.+||..+       ..-....+....-+.+-..++.-++.++....++++.+
T Consensus        67 ~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l-------~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~  139 (237)
T PF00261_consen   67 EEAEKRADESERARKVLENREQSDEERIEELEQQL-------KEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAA  139 (237)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33444555556788999999998877777888777       33344455555556677777777777888888888888


Q ss_pred             HHHhhhhhhhchhHHHHhhhHHhHHHH
Q 011223          282 EDKLKNLESHRPLLVDQLNYVSKIHDQ  308 (490)
Q Consensus       282 E~kl~~lE~qr~lL~dql~svs~Ihd~  308 (490)
                      +.+++.|+..=..+-.+|.++..-.+.
T Consensus       140 E~ki~eLE~el~~~~~~lk~lE~~~~~  166 (237)
T PF00261_consen  140 ESKIKELEEELKSVGNNLKSLEASEEK  166 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            888888886666666666665544433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.78  E-value=23  Score=31.78  Aligned_cols=54  Identities=19%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             HhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhh
Q 011223          188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAK  245 (490)
Q Consensus       188 gv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~  245 (490)
                      .-..++=.+|-+||.++|-....|...-.++-.-.|++    ..|...+.+|++.++.
T Consensus        31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~----~~l~~~~~rL~~~~~~   84 (151)
T PF11559_consen   31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDI----ERLQNDVERLKEQLEE   84 (151)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHH
Confidence            33455667889999999887777666555554444332    3444444444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []

Probab=86.32  E-value=38  Score=33.87  Aligned_cols=130  Identities=25%  Similarity=0.293  Sum_probs=86.3

Q ss_pred             cccCCCCCCCCCCCCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhc
Q 011223          160 GKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL  239 (490)
Q Consensus       160 ~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~l  239 (490)
                      =|-+--|+||..||...+|+...+.-.--++.-.+..|++|=+|||..                         ||-+   
T Consensus        94 EkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~-------------------------E~E~---  145 (233)
T PF04065_consen   94 EKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQL-------------------------EAEI---  145 (233)
T ss_pred             HHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHH---
Confidence            355678999999999999888777777777777777777777777643                         2222   


Q ss_pred             hHHHhhhhhhHHHHH------HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHH
Q 011223          240 REEVAKKSSFIENLE------KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDII  313 (490)
Q Consensus       240 r~eva~kss~~e~l~------ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi  313 (490)
                                 |+|.      +..+.+.+++.+++.=++-.+--|..||.-|+.|+.-. |   .-..|..|++.|.-.|
T Consensus       146 -----------E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~-l---~~e~V~~ikedieyYv  210 (233)
T PF04065_consen  146 -----------ESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDE-L---DPEQVEDIKEDIEYYV  210 (233)
T ss_pred             -----------HHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C---CHHHHHHHHHHHHHHH
Confidence                       2221      23446788888888878888888888888887777332 1   1255667888888888


Q ss_pred             HHhcCCCccc-cccccccCC
Q 011223          314 KIVDDGNLDQ-SGLSESLFL  332 (490)
Q Consensus       314 ~~vdd~k~~~-s~LsEs~f~  332 (490)
                      +.=.+.-... ..+++.+++
T Consensus       211 e~n~d~Df~ede~iYddl~L  230 (233)
T PF04065_consen  211 ESNQDPDFEEDEDIYDDLNL  230 (233)
T ss_pred             HcCCCCcccchHhHhhccCC
Confidence            8743322111 244555544

This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=85.47  E-value=36  Score=37.05  Aligned_cols=198  Identities=19%  Similarity=0.272  Sum_probs=96.1

Q ss_pred             CchhHHHHhhhchhHHHHHHHHhhhhhh-------hhhhHHH----------HHhhhhcceeeeeehhhHHh--------
Q 011223          181 GLPAVVYGVIKRTNEIVEELVGQIDATA-------KSRNDVR----------EQMEQRNFEIAIEVSELEAT--------  235 (490)
Q Consensus       181 GL~Aiaygv~KRtneiveell~Qida~~-------ksrn~aR----------eQmeqrny~IAIEVSqLEAs--------  235 (490)
                      -++.|.-+=++.+++.++.+-.+||.-.       .+|+.+-          ..+...|.+...|...|-.+        
T Consensus       268 ~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~  347 (569)
T PRK04778        268 NLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESEL  347 (569)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhH
Confidence            3455777778888888888877777532       2333222          23344455555555555555        


Q ss_pred             --hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh----hhchhHHHHhhhHHhHHHHH
Q 011223          236 --ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE----SHRPLLVDQLNYVSKIHDQV  309 (490)
Q Consensus       236 --is~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE----~qr~lL~dql~svs~Ihd~L  309 (490)
                        +..+..++..-...+..+...+..+....++++.+...+.+.+..++.....+.    ..|.--.+.-..+..+...|
T Consensus       348 ~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L  427 (569)
T PRK04778        348 ESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL  427 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              444444444444444444444444444445444444444444444333322222    22333333333344444444


Q ss_pred             HHHHHHhcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhh
Q 011223          310 DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKE  389 (490)
Q Consensus       310 ~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kEne  389 (490)
                      ..+-+.+.-.++  ..+|+++           +-..-..-..|.+|...+.. ..-=++.-.++.......+..|.++..
T Consensus       428 ~~ikr~l~k~~l--pgip~~y-----------~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~  493 (569)
T PRK04778        428 HEIKRYLEKSNL--PGLPEDY-----------LEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETE  493 (569)
T ss_pred             HHHHHHHHHcCC--CCCcHHH-----------HHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444  3333322           11111223344444444444 222333344456667777777777777


Q ss_pred             hHH
Q 011223          390 HIV  392 (490)
Q Consensus       390 DI~  392 (490)
                      |+.
T Consensus       494 dL~  496 (569)
T PRK04778        494 ELV  496 (569)
T ss_pred             HHH
Confidence            764

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=84.81  E-value=94  Score=37.03  Aligned_cols=56  Identities=27%  Similarity=0.408  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhh--------------hhhhhhhcccCC
Q 011223          109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV--------------TGIEKISGKVSN  164 (490)
Q Consensus       109 ~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~--------------sg~Ekis~k~s~  164 (490)
                      ...++.+....-+.|+-...+|....+.+..++..+...-++|.              .|-+.-=|||-+
T Consensus       492 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid  561 (1201)
T PF12128_consen  492 VEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVID  561 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCC
Confidence            33444444555555555555666666666677777777777763              466666688876

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=84.41  E-value=23  Score=31.87  Aligned_cols=65  Identities=23%  Similarity=0.333  Sum_probs=41.2

Q ss_pred             HHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223          213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL  285 (490)
Q Consensus       213 ~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl  285 (490)
                      -+|+-|..|+ .+..++..++..+       +++-+..+.|..+-..+.++|..++.++..+.+.+.......
T Consensus       104 s~k~~l~~R~-~~~~~~~~~~~~l-------~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~  168 (218)
T cd07596         104 AVKETLDDRA-DALLTLQSLKKDL-------ASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRY  168 (218)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677776 5666666666666       666666777765554566777766666666666665544433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=83.56  E-value=48  Score=40.30  Aligned_cols=64  Identities=23%  Similarity=0.342  Sum_probs=44.1

Q ss_pred             HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHh
Q 011223          253 LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV  316 (490)
Q Consensus       253 l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~v  316 (490)
                      +..+.++.+.++++.+.+-..+...|..++..++++...+.-+.+-+..+.+....|..-..-.
T Consensus       492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~  555 (1317)
T KOG0612|consen  492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDM  555 (1317)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence            4456666677777777777777777777777777777777777777777777776666544333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=83.52  E-value=82  Score=35.32  Aligned_cols=161  Identities=25%  Similarity=0.347  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 011223           77 STRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIE  156 (490)
Q Consensus        77 ~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~E  156 (490)
                      ++--||..+|||.++---||+|-.=+..|        ++|+.-=+.                 |.-+|....    .|+-
T Consensus        30 as~ir~sR~rEK~El~~LNDRLA~YIekV--------R~LEaqN~~-----------------L~~di~~lr----~~~~   80 (546)
T KOG0977|consen   30 ASPIRDSREREKKELQELNDRLAVYIEKV--------RFLEAQNRK-----------------LEHDINLLR----GVVG   80 (546)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH-----------------HHHHHHHHH----hhcc
Confidence            34568889999999988898888777644        344431111                 444544322    1211


Q ss_pred             hhhcccCCCCCCCCCCCCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhh
Q 011223          157 KISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI  236 (490)
Q Consensus       157 kis~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsi  236 (490)
                         +-.|+.|.          +|.        .=++      .+-+-+|-|++.|-.+.           |++..|...+
T Consensus        81 ---~~ts~ik~----------~ye--------~El~------~ar~~l~e~~~~ra~~e-----------~ei~kl~~e~  122 (546)
T KOG0977|consen   81 ---RETSGIKA----------KYE--------AELA------TARKLLDETARERAKLE-----------IEITKLREEL  122 (546)
T ss_pred             ---CCCcchhH----------Hhh--------hhHH------HHHHHHHHHHHHHHHHH-----------HHHHHhHHHH
Confidence               11122222          222        1111      12334555666664432           3444555555


Q ss_pred             hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHh
Q 011223          237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK  304 (490)
Q Consensus       237 s~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~  304 (490)
                      --||--+.++...+..-...+.+-...++.++-|...+|-++.-++++++.|...+.=|.++|..+++
T Consensus       123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            55555555555555555555555567788888888999999999999999999888888888887775

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=83.45  E-value=19  Score=42.24  Aligned_cols=128  Identities=24%  Similarity=0.323  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhH
Q 011223           28 SVERFREVLAELNRERQAREA-------AENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLST  100 (490)
Q Consensus        28 ~~~~~~~l~ael~~er~ar~a-------ae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~  100 (490)
                      .+|+|++.+|.|++.|..-+.       +|+-..-.+.+|+-+|-.--+---..-++.+.=|+-...++-+-.+.+.+.+
T Consensus       387 e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~  466 (980)
T KOG0980|consen  387 EQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEE  466 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            477899999999998865444       4444555666777777766666666777777777777777777788888888


Q ss_pred             HHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCC
Q 011223          101 EIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFK  166 (490)
Q Consensus       101 ~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k  166 (490)
                      +..++|.+-.+++++.+.+-...++       -.+..++++.|..+    |-.-+++..+++++..
T Consensus       467 ~~~~L~d~le~~~~~~~~~~~K~e~-------~~~~le~l~~El~~----l~~e~~~lq~~~~~~~  521 (980)
T KOG0980|consen  467 ENTNLNDQLEELQRAAGRAETKTES-------QAKALESLRQELAL----LLIELEELQRTLSNLA  521 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHH----HHHHHHHHHHHhhhHH
Confidence            8888888888888887776666444       45567778888765    4566788888866643

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=83.30  E-value=0.36  Score=54.74  Aligned_cols=251  Identities=20%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhh
Q 011223           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIA  108 (490)
Q Consensus        29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~  108 (490)
                      +-.|+.|-++|+.|++.|-.|-..+..++..+|=|-              .+-|.+.+-+.++.|...++...|.     
T Consensus       524 qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe--------------~~ld~~n~~~~e~~k~~kk~q~qlk-----  584 (859)
T PF01576_consen  524 QRQLESLEAELEEERKERAEALREKKKLESDLNELE--------------IQLDHANRANEEAQKQLKKLQAQLK-----  584 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHhHHHHHHHHHHHHHHHH-----
Confidence            567899999999999999888888888877776553              2223333333333333344444443     


Q ss_pred             HHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhh----------hhhhhhhhcccCCCCCCCCCCCCCCcc
Q 011223          109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHML----------VTGIEKISGKVSNFKNFSAGGLPRSQK  178 (490)
Q Consensus       109 ~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL----------~sg~Ekis~k~s~~k~f~~~~lP~SqK  178 (490)
                        +++.++++..+.+++.+.++-.+-+-...|++|++....-+          =+-..-++..++...+          .
T Consensus       585 --dlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~----------~  652 (859)
T PF01576_consen  585 --DLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTS----------Q  652 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------h
Confidence              55666677777777766666655555556666666544322          2222333333333322          1


Q ss_pred             cCCchhHHHHhhhc---hhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHH
Q 011223          179 YTGLPAVVYGVIKR---TNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEK  255 (490)
Q Consensus       179 YtGL~Aiaygv~KR---tneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~k  255 (490)
                      .+.|.......-.+   ...=++|...-...+..--..|..|+.+    ++.|+++--.++       ..--+.--+|++
T Consensus       653 ~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~----l~~eL~~Eq~~~-------~~le~~k~~LE~  721 (859)
T PF01576_consen  653 NSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQ----LAEELRQEQDHN-------QHLEKEKKALER  721 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            11222222222222   2222344444444444444444444443    344444433332       122222335666


Q ss_pred             HHHHhHHHHHHHHHhHH-HHHHHHHHHHHHhhhhh----hhchhHHHHhhhHHhHHHHHHHHHHHhcCCCc
Q 011223          256 SLIEKDEKVAEIESQGL-ELRQLVNEYEDKLKNLE----SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL  321 (490)
Q Consensus       256 s~~eke~~i~ele~E~~-~lKe~V~e~E~kl~~lE----~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~  321 (490)
                      .+.+--.+|.++|.-+. .-|..|..+|.++++|+    .-..-=.+....++++...|.++.--+++++-
T Consensus       722 q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k  792 (859)
T PF01576_consen  722 QVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERK  792 (859)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence            66666677776666222 12445566666666666    22222356778888999999888888888764

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK11637 AmiB activator; Provisional

Probab=82.89  E-value=64  Score=33.63  Aligned_cols=22  Identities=5%  Similarity=0.122  Sum_probs=14.4

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHH
Q 011223          376 SLNEAVGQLVKEKEHIVSLLRS  397 (490)
Q Consensus       376 eLE~sV~~L~kEneDI~sLLRs  397 (490)
                      .....+..|.++...+..+|..
T Consensus       230 ~~~~~l~~l~~~~~~L~~~I~~  251 (428)
T PRK11637        230 KDQQQLSELRANESRLRDSIAR  251 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777777777764

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=82.26  E-value=92  Score=34.96  Aligned_cols=88  Identities=27%  Similarity=0.355  Sum_probs=56.6

Q ss_pred             HhhhhhhhhhhHH---HHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 011223          202 GQIDATAKSRNDV---REQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV  278 (490)
Q Consensus       202 ~Qida~~ksrn~a---ReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V  278 (490)
                      .|++-+-+-+++-   ..++++.+-+.-++|.+|++.+...+++...-....+.+..+......+...|..+...++.+|
T Consensus       143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri  222 (546)
T PF07888_consen  143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI  222 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555665553   4455666666667777777777777777776666666666655555555666666666677777


Q ss_pred             HHHHHHhhhhh
Q 011223          279 NEYEDKLKNLE  289 (490)
Q Consensus       279 ~e~E~kl~~lE  289 (490)
                      .+|+..+.++.
T Consensus       223 ~~LEedi~~l~  233 (546)
T PF07888_consen  223 RELEEDIKTLT  233 (546)
T ss_pred             HHHHHHHHHHH
Confidence            77766665554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.04  E-value=1.4e+02  Score=36.46  Aligned_cols=173  Identities=14%  Similarity=0.224  Sum_probs=86.5

Q ss_pred             hhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCC
Q 011223           93 RSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGG  172 (490)
Q Consensus        93 ~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~  172 (490)
                      +.+-++-+.|..++.......|+++...+.+.+-..-+..+......+++||+.-...+..--++++--.-.++.     
T Consensus       398 ~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~-----  472 (1293)
T KOG0996|consen  398 REDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQ-----  472 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence            344455566666666667777777777776666555566666666777788777666665554444321111221     


Q ss_pred             CCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhh---hhcceeeeeehhhHHhhhhchHHHhhhhhh
Q 011223          173 LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQME---QRNFEIAIEVSELEATISGLREEVAKKSSF  249 (490)
Q Consensus       173 lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQme---qrny~IAIEVSqLEAsis~lr~eva~kss~  249 (490)
                           +-.|+.+   -..+.-.+++..+ .|+-.+.---+-|+++++   ++--+--==|-.|..++..++....++...
T Consensus       473 -----~t~~~~~---e~~~~ekel~~~~-~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~  543 (1293)
T KOG0996|consen  473 -----ETEGIRE---EIEKLEKELMPLL-KQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTE  543 (1293)
T ss_pred             -----hhhhhHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1112211   1122222222222 222211111222332221   000000001235566666667777777777


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 011223          250 IENLEKSLIEKDEKVAEIESQGLELRQLVN  279 (490)
Q Consensus       250 ~e~l~ks~~eke~~i~ele~E~~~lKe~V~  279 (490)
                      +.+|...+.....++.+.++++..++....
T Consensus       544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~  573 (1293)
T KOG0996|consen  544 LDDLKEELPSLKQELKEKEKELPKLRKEER  573 (1293)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence            777777777777777776665444444433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=80.65  E-value=1.4e+02  Score=36.00  Aligned_cols=289  Identities=22%  Similarity=0.337  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhh
Q 011223           31 RFREVLAELNRERQAREAAENSATELSE---KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNI  107 (490)
Q Consensus        31 ~~~~l~ael~~er~ar~aae~s~~e~~~---~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~  107 (490)
                      .+++|..+|+-=|..|.---.-+-|++.   .|.-|-.|---.+-+--++.|+=-.+-.++++++-..++.-.++++.-.
T Consensus       232 QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad  311 (1243)
T KOG0971|consen  232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTAD  311 (1243)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677777777666665443333444432   2333333333444455566666666666778888888888777774322


Q ss_pred             h-------------HHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 011223          108 A-------------KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP  174 (490)
Q Consensus       108 ~-------------~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP  174 (490)
                      .             |-|.-.+==+.++.      .+|+.+--++-|++|+++-            |          +   
T Consensus       312 ~iEmaTldKEmAEERaesLQ~eve~lkE------r~deletdlEILKaEmeek------------G----------~---  360 (1243)
T KOG0971|consen  312 AIEMATLDKEMAEERAESLQQEVEALKE------RVDELETDLEILKAEMEEK------------G----------S---  360 (1243)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc------------C----------C---
Confidence            1             11111111122232      2334444455566666654            1          0   


Q ss_pred             CCcccCCchhHHHHhhhchh---H-HHHHHHHhhhhhhh---hhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhh
Q 011223          175 RSQKYTGLPAVVYGVIKRTN---E-IVEELVGQIDATAK---SRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKS  247 (490)
Q Consensus       175 ~SqKYtGL~Aiaygv~KRtn---e-iveell~Qida~~k---srn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~ks  247 (490)
                            |-|+..-|-.|+-+   . +=|-||+-+|-.+-   +|..+---||-.|-    |+++|.              
T Consensus       361 ------~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~s----E~~eL~--------------  416 (1243)
T KOG0971|consen  361 ------DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNS----ELEELR--------------  416 (1243)
T ss_pred             ------CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh----HHHHHH--------------
Confidence                  11222222234332   1 33455666554432   23333333443332    222222              


Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHhHH---HHHHHHHHHHHHhhhhhhhchhHHH---HhhhHHhHHHHHHHHHHHhcCCCc
Q 011223          248 SFIENLEKSLIEKDEKVAEIESQGL---ELRQLVNEYEDKLKNLESHRPLLVD---QLNYVSKIHDQVDDIIKIVDDGNL  321 (490)
Q Consensus       248 s~~e~l~ks~~eke~~i~ele~E~~---~lKe~V~e~E~kl~~lE~qr~lL~d---ql~svs~Ihd~L~~vi~~vdd~k~  321 (490)
                      ..-|+|.+.+.+-|.+|+++...|-   ..-+-|.-|-++-=|||++=++|-+   +|.-+.-|+++|.+.-+-+.    
T Consensus       417 r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele----  492 (1243)
T KOG0971|consen  417 RQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELE----  492 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            2334555555555666665444211   1111222232333344555566655   44456667777776655443    


Q ss_pred             cccccccccCCCcccchh-----HHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 011223          322 DQSGLSESLFLPQETDME-----ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE  387 (490)
Q Consensus       322 ~~s~LsEs~f~~~etD~e-----e~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kE  387 (490)
                        ..      +..|+|+-     +-.+-.=+.+++|||+--++. |++.++-.=...+.++-+.+.++.+|
T Consensus       493 --~D------LreEld~~~g~~kel~~r~~aaqet~yDrdqTI~-KfRelva~Lqdqlqe~~dq~~Sseee  554 (1243)
T KOG0971|consen  493 --LD------LREELDMAKGARKELQKRVEAAQETVYDRDQTIK-KFRELVAHLQDQLQELTDQQESSEEE  554 (1243)
T ss_pred             --HH------HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence              11      12233433     222333466888999876653 66666655444455554444444444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=80.45  E-value=32  Score=34.95  Aligned_cols=59  Identities=29%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             eeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223          227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL  285 (490)
Q Consensus       227 IEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl  285 (490)
                      .|+..|-+.+.-+..+++.+...+..|+..+...+.+|.++..+...+...|.+++...
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~  267 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR  267 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555556666666666666655555555555555544333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=80.36  E-value=1.1e+02  Score=37.13  Aligned_cols=189  Identities=21%  Similarity=0.249  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHH--------------hHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHH
Q 011223          250 IENLEKSLIEKDEKVAEIES--------------QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKI  315 (490)
Q Consensus       250 ~e~l~ks~~eke~~i~ele~--------------E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~  315 (490)
                      +.+|-+++-..+..++-+..              ..+.+.+++.+++..+.++|.-|..|+++|.++.-...--..+=+.
T Consensus       490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~  569 (1195)
T KOG4643|consen  490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQN  569 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            45555555555444443332              4556677888999999999999999998888776541111111111


Q ss_pred             hcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHHHHHHHh-HHHHHhhH----HHHhhHHHHHHHHHHhhhh
Q 011223          316 VDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKT-RDLVQKKS----REVKSLNEAVGQLVKEKEH  390 (490)
Q Consensus       316 vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv-~~~~E~kk----kE~keLE~sV~~L~kEneD  390 (490)
                      .++..+                ....++.++-...+.-.=-.-++.+. +.|+-...    +.+.-|-..+.-|.++|.|
T Consensus       570 ~n~lE~----------------~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kll~~Kkd  633 (1195)
T KOG4643|consen  570 NNDLEL----------------IHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESKLLKEKKD  633 (1195)
T ss_pred             hhHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHhhcchhHH
Confidence            110000                11222222222221111111111221 23332222    1122333445556666666


Q ss_pred             HHHHHHHHhhhhcccCCCCchhhHHHHHHhhhhhhccccchhcccCCCCCCCCccccCCccchhHHHHHHHHHHHHHHHH
Q 011223          391 IVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKA  470 (490)
Q Consensus       391 I~sLLRsALsEKea~E~eqkrseLLQiAE~GLrevGfgF~~~~i~Gdg~~e~S~d~~~~~seeedEVySLAsalEniMK~  470 (490)
                      ++.+..=-|.     +  .+ -..++.+ .||..---.|+    .   +   ..+....|+.|.+|=.+++|.++|.|+.
T Consensus       634 r~ree~kel~-----~--ek-l~ve~l~-e~l~~lp~~fk----t---~---n~e~l~V~sn~lEe~qr~~~~~sn~~~~  694 (1195)
T KOG4643|consen  634 RNREETKELM-----D--EK-LQVEDLQ-EKLRELPLEFK----T---K---NDEILMVGSNILEERQRLGGCKSNAEID  694 (1195)
T ss_pred             HHHHHHhhcc-----c--cc-hhHHHHH-HHHHhCchhhc----c---c---cchhhhhhhhhhhhhhhhccccccchHH
Confidence            6665543332     1  11 2333443 36766666665    1   1   2233345677777889999999999998


Q ss_pred             HHH
Q 011223          471 SQL  473 (490)
Q Consensus       471 sql  473 (490)
                      ++.
T Consensus       695 l~q  697 (1195)
T KOG4643|consen  695 LLQ  697 (1195)
T ss_pred             HHH
Confidence            876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	490
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 1e-14
 Identities = 89/581 (15%), Positives = 192/581 (33%), Gaps = 146/581 (25%)

Query: 7   DAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKAL 66
           DA + + + + DVQ       S E    ++   +                     RL   
Sbjct: 27  DAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTL---------------RL--- 67

Query: 67  AHESIKRRDESTRQR--DEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD----EVT 120
              ++  + E   Q+  +E LR   + L S   + TE  + ++     ++Q D    +  
Sbjct: 68  -FWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 121 KARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFS--AGGLPRSQK 178
                + S+L    K +  L  E+  + ++L+ G+   SGK       +  A  +  S K
Sbjct: 125 VFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGV-LGSGK-------TWVALDVCLSYK 175

Query: 179 Y-TGLPAVVY----GVIKRTNEIVE---ELVGQIDATAKSRND---------------VR 215
               +   ++            ++E   +L+ QID    SR+D               +R
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 216 EQMEQRNFEIAI----EVSE---LEA------TISGLRE-EVAKKSSFIENLEKSLIEKD 261
             ++ + +E  +     V       A       +   R  +V    S       SL    
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 262 EKVAEIESQGLELRQLVNEYEDKLKN-LESHRPLLV-----------DQLNYVSKI-HDQ 308
             +   E + L L + ++     L   + +  P  +              +    +  D+
Sbjct: 296 MTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 309 VDDIIKI-VDDGNLDQSGLSE-----SLFLPQETDMEENIRASLAGMESIYQLTRIVVEK 362
           +  II+  ++   L+ +   +     S+F P    +   + + +   + I     +VV K
Sbjct: 355 LTTIIESSLN--VLEPAEYRKMFDRLSVF-PPSAHIPTILLSLIWF-DVIKSDVMVVVNK 410

Query: 363 --TRDLVQKKSREVK-SLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAE 419
                LV+K+ +E   S+     +L  + E+  +L RS +    ++  +  +++L     
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYL 469

Query: 420 NG---------LREAG------------IDFKF--SKLLSDG-----KVPVSD------- 444
           +          L+               +DF+F   K+  D         + +       
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 445 ------DKANAMETEEDEIYN-LAGALENIVKASQLEIVEL 478
                 D     E   + I + L    EN++ +   +++ +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 4e-13
 Identities = 64/465 (13%), Positives = 157/465 (33%), Gaps = 111/465 (23%)

Query: 81  RDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKAR---DGSRSQLDEVTKA- 136
            +   ++ +++ +S   LS E  E+    D ++   D V+          S+ +E+ +  
Sbjct: 31  DNFDCKDVQDMPKS--ILSKE--EI----DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 137 ------------KDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPA 184
                          +++E    + M    IE+     ++ + F+   + R Q Y  L  
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 185 VVYGVIKRTNEIVEELVGQIDATAKS-------RNDVREQMEQRNFEIA-IEVSELEATI 236
            +  +    N +++ ++G    + K+        +   +   + +F+I  + +       
Sbjct: 143 ALLELRPAKNVLIDGVLG----SGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCN--- 193

Query: 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRP--- 293
                      + +E L+K L + D            ++  ++  + +L+ L   +P   
Sbjct: 194 --------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 294 -LLVDQLNYVSKIHDQVDDI--IKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGME 350
            LLV            + ++   K  +  NL      + L     T   + +   L+   
Sbjct: 246 CLLV------------LLNVQNAKAWNAFNLS----CKILL----TTRFKQVTDFLSAAT 285

Query: 351 SIYQLTRIVVEKTRD-LVQKKSREV--KSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDP 407
           +    T I ++     L   + + +  K L+     L +E         S +++ +    
Sbjct: 286 T----THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 408 S----------SKTNELFKVAENGLREAGIDFK--FSKLL---SDGKVPV-------SDD 445
           +           K   + + + N L  A  +++  F +L        +P         D 
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 446 KANAMETEEDEIYNLAGALENIVKASQLEI----VELRHSVEELR 486
             + +    ++++     +E   K S + I    +EL+  +E   
Sbjct: 400 IKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEY 443

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 9e-13
 Identities = 75/513 (14%), Positives = 145/513 (28%), Gaps = 148/513 (28%)

Query: 6   GDAVLSDVEGEIDVQTSSDEDFSVERFREV----LAELNRERQAREAAENSATELSEKFN 61
           G   ++       +          +   ++    L   N      E  +    ++   + 
Sbjct: 162 GKTWVA-------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 62  RLKALAHESIKRRDESTRQRDEALREKEE------ILRSNDKLSTEIAEVNIAKDEVVKQ 115
              +    +IK R  S +     L + +       +L             N+   +    
Sbjct: 215 SR-SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL------------NVQNAKAWNA 261

Query: 116 LDE-----VTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGK--VSNFKNF 168
            +      +T  R         VT       +   +  H     +     K  +  + + 
Sbjct: 262 FNLSCKILLT-TRFKQ------VTDFLSAATTTHISLDHHS-MTLTPDEVKSLLLKYLDC 313

Query: 169 SAGGLPRSQKYTGLPAVVYGVI-------------------KRTNEIVEELVGQIDATAK 209
               LPR +  T  P  +  +I                    +   I+E  +  ++    
Sbjct: 314 RPQDLPR-EVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--- 368

Query: 210 SRNDVREQMEQ-----RNFEIAIEVSEL--EATISGLREEVAKKSSFIENLEKSLIEKDE 262
              + R+  ++      +  I   +  L     I      V  K       + SL+EK  
Sbjct: 369 --AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-----HKYSLVEKQP 421

Query: 263 K--VAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGN 320
           K     I S  LEL+  +    +    L  HR  +VD  N + K  D  DD+I    D  
Sbjct: 422 KESTISIPSIYLELKVKL----ENEYAL--HR-SIVDHYN-IPKTFDS-DDLIPPYLDQY 472

Query: 321 LDQSGLSESLFLP---QETDMEENIRASLAGMESIYQLTRIVVEKTRDL--VQKKSREVK 375
                      +    +  +  E +         ++           D   +++K R   
Sbjct: 473 FYS-------HIGHHLKNIEHPERM----TLFRMVFL----------DFRFLEQKIRHDS 511

Query: 376 SLNEAVG-------QLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGID 428
           +   A G       QL   K +I         +R+        + L K+ EN +      
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICD--NDPKYERLVNA---ILDFLPKIEENLICS---- 562

Query: 429 FKFSKLLSDGKVPVSDDKANAMETEEDEIYNLA 461
            K++ LL             A+  E++ I+  A
Sbjct: 563 -KYTDLLR-----------IALMAEDEAIFEEA 583

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 41/286 (14%), Positives = 104/286 (36%), Gaps = 35/286 (12%)

Query: 29   VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREK 88
             E    +  +L  E +    AE     L+ K   L+ + HE   R +E   +  +   EK
Sbjct: 891  CEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950

Query: 89   -------EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLR 141
                    ++    ++      ++ + K     ++ ++         Q +++TK +  L 
Sbjct: 951  KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010

Query: 142  SEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEEL- 200
              + +    L    EK    ++  K           K+  + + +   +K+  +  +EL 
Sbjct: 1011 ERVSDLTTNLAEEEEKAK-NLTKLK----------NKHESMISELEVRLKKEEKSRQELE 1059

Query: 201  -------------VGQIDATAKSRNDVREQMEQRNFEIAIEVSELE---ATISGLREEVA 244
                           QI        +++ Q+ ++  E+   ++ LE   +  +   +++ 
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119

Query: 245  KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLES 290
            +  S I +L++ L  +     + E Q  +L + +   + +L++   
Sbjct: 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 32/237 (13%), Positives = 81/237 (34%), Gaps = 10/237 (4%)

Query: 30   ERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKE 89
            ++  ++  +L  E  AR+  +        K  +++        + ++ T++R        
Sbjct: 955  QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014

Query: 90   EILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAH 149
            ++  +  +   +   +   K++    + E+            E+ K K  L  E  +   
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074

Query: 150  M---LVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDA 206
                L   I ++  +++  +      L R +  T         I+     + +L   +++
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134

Query: 207  TAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEK 263
               +RN   +Q    + E+    +ELE T+     +        E       + D+K
Sbjct: 1135 EKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ-------QELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 42/364 (11%), Positives = 117/364 (32%), Gaps = 38/364 (10%)

Query: 36   LAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSN 95
            L ++ R+ +  +A +       E+  + +A   E  ++  +   +++    + +      
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908

Query: 96   DKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGI 155
             +       +   K E+ + L E+    +    +  ++   K  ++ ++ +    L    
Sbjct: 909  AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE-- 966

Query: 156  EKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVR 215
                                               +   + ++      D   K   D  
Sbjct: 967  ----------------------------------EEAARQKLQLEKVTADGKIKKMEDDI 992

Query: 216  EQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELR 275
              ME +N ++  E   LE  +S L   +A++    +NL K   + +  ++E+E +  +  
Sbjct: 993  LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052

Query: 276  QLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDD--GNLDQSGLSESLFLP 333
            +   E E   + LE     L +Q+  +     ++   +   ++           E+    
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112

Query: 334  QETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS 393
                    + + ++ ++   +  +    K     +  S E+++L   +   +        
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172

Query: 394  LLRS 397
            L  S
Sbjct: 1173 LRGS 1176

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 32/255 (12%), Positives = 81/255 (31%), Gaps = 27/255 (10%)

Query: 37   AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSND 96
              L R +      E+ +  + +      A  H     +     Q        +  L+   
Sbjct: 851  GYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK 910

Query: 97   KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIE 156
              +  +         +  ++ ++ +  D    +   + +  + L          L + +E
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 157  KISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVRE 216
            ++       KN +                    +    E + +L  ++  T   +  + E
Sbjct: 971  RLRMSEEEAKNATN------------------RVLSLQEEIAKLRKELHQTQTEKKTIEE 1012

Query: 217  QMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGL--EL 274
              ++   E    VSEL+   + L+ E        E L + + ++ +++ E   + L  E 
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTE-------KEELNRRIHDQAKEITETMEKKLVEET 1065

Query: 275  RQLVNEYEDKLKNLE 289
            +QL  +  D+    +
Sbjct: 1066 KQLELDLNDERLRYQ 1080

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	490
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.78
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.39
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.15
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	89.44
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	87.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	83.55

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.78  E-value=0.22  Score=42.80  Aligned_cols=9  Identities=22%  Similarity=0.387  Sum_probs=3.2

Q ss_pred             HhhHHHHHH
Q 011223           50 ENSATELSE   58 (490)
Q Consensus        50 e~s~~e~~~   58 (490)
                      +....++..
T Consensus        40 ~~~~~~~~~   48 (284)
T 1c1g_A           40 EDELVSLQK   48 (284)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.39  E-value=0.043  Score=61.44  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 011223           31 RFREVLAELNRERQAREAAENSATELSEKFNRL   63 (490)
Q Consensus        31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rl   63 (490)
                      .+.++-.+|..-+..-...+....+++.....|
T Consensus       858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L  890 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL  890 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333343334333333333333334444444333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.15  E-value=0.021  Score=63.92  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhH
Q 011223           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLK   64 (490)
Q Consensus        29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlk   64 (490)
                      .+++.++-+.|.+....+..++.....++...+.++
T Consensus       863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~  898 (1184)
T 1i84_S          863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ  898 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555554444444

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=89.44  E-value=9.3  Score=32.61  Aligned_cols=9  Identities=22%  Similarity=0.497  Sum_probs=3.3

Q ss_pred             HHHHHHHhh
Q 011223           55 ELSEKFNRL   63 (490)
Q Consensus        55 e~~~~f~rl   63 (490)
                      .+...+..+
T Consensus        38 ~~~~~~~~~   46 (284)
T 1c1g_A           38 QLEDELVSL   46 (284)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=87.12  E-value=8.3  Score=36.13  Aligned_cols=55  Identities=4%  Similarity=0.092  Sum_probs=39.4

Q ss_pred             eeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 011223          227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL  288 (490)
Q Consensus       227 IEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~l  288 (490)
                      -||..|++.+.+++..+......++++++.....+..|.       .++.++..+..++.+.
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~-------~~~~ri~~~~~~l~~v   86 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ-------DTNAKIASIQKKMSEI   86 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcc
Confidence            567788888888888877777777777666665555555       7777777777776443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.55  E-value=11  Score=37.90  Aligned_cols=114  Identities=8%  Similarity=0.016  Sum_probs=47.2

Q ss_pred             hhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 011223          205 DATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDK  284 (490)
Q Consensus       205 da~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~k  284 (490)
                      +...+.-+..++.++.+--...+.+.++......+.+++.+-......+++........+.+..++...+++.+.+++..
T Consensus       473 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  552 (597)
T 3oja_B          473 IQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQ  552 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence            33334444444455544434444443333333333333332222222222222222333333333333444444444444


Q ss_pred             hhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhcCCCc
Q 011223          285 LKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL  321 (490)
Q Consensus       285 l~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~  321 (490)
                      +   +.++..+.+.-.-...+...+....+.++++-.
T Consensus       553 ~---~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~  586 (597)
T 3oja_B          553 L---DNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD  586 (597)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             H---hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4   333444444444556666777777777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00