Citrus Sinensis ID: 011226
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | 2.2.26 [Sep-21-2011] | |||||||
| O22714 | 491 | Pentatricopeptide repeat- | yes | no | 0.993 | 0.991 | 0.705 | 0.0 | |
| Q9FZ24 | 537 | Pentatricopeptide repeat- | no | no | 0.979 | 0.893 | 0.404 | 1e-100 | |
| Q93WC5 | 502 | Pentatricopeptide repeat- | no | no | 0.957 | 0.934 | 0.408 | 6e-93 | |
| Q8LPS6 | 524 | Pentatricopeptide repeat- | no | no | 0.848 | 0.793 | 0.357 | 2e-74 | |
| Q9SY07 | 532 | Pentatricopeptide repeat- | no | no | 0.916 | 0.843 | 0.325 | 1e-70 | |
| Q84JR3 | 492 | Pentatricopeptide repeat- | no | no | 0.936 | 0.932 | 0.313 | 2e-64 | |
| Q3E911 | 491 | Pentatricopeptide repeat- | no | no | 0.904 | 0.902 | 0.308 | 1e-58 | |
| Q9SKU6 | 490 | Pentatricopeptide repeat- | no | no | 0.836 | 0.836 | 0.314 | 2e-58 | |
| Q94B59 | 409 | Pentatricopeptide repeat- | no | no | 0.595 | 0.713 | 0.337 | 1e-38 | |
| Q9C7F1 | 566 | Putative pentatricopeptid | no | no | 0.840 | 0.727 | 0.286 | 2e-38 |
| >sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/489 (70%), Positives = 411/489 (84%), Gaps = 2/489 (0%)
Query: 1 MAMPQRFGRTKNIAKRS-KKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVG 59
MAM + R++++ KRS KK++EE LY+RLFK G ++V VRQQLNQFLK K VFKWEVG
Sbjct: 1 MAM-RHLSRSRDVTKRSTKKYIEEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVG 59
Query: 60 DTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET 119
DT+KKLR+R LYYPALKLSE ME+RGMNKTVSDQAIHLDLVAK + I A ENYFVDLPET
Sbjct: 60 DTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPET 119
Query: 120 SKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPA 179
SK LTYGSLLNCYCKEL+TEKAE LL KMKELN+ SSM +NSLMTLY KTG EK+PA
Sbjct: 120 SKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPA 179
Query: 180 IIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239
+IQE+KA ++MPDSYTYNVWMRALAA NDISG ERVIEEM RDGRVA DWTT+SN+ASIY
Sbjct: 180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239
Query: 240 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 299
V+AGL +KAE+AL+ELE +N RD +AYQFLITLYG+ G L+EVYRIWRSLRLA P T+N
Sbjct: 240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSN 299
Query: 300 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 359
++YLNMIQVLV L DLPGAE FKEW++ C+TYDIR+ NV+IGAYA+EG ++ A ELKE+
Sbjct: 300 VAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEK 359
Query: 360 ARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419
A RRG NAKTWEIF DYY+++GDM A++C+ KA+ G+GDGGKW+PS ET+R M +
Sbjct: 360 APRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSY 419
Query: 420 FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEA 479
FEQ+KDV+GAE LEILK D++G E+FEPLIRTYAAAG++ P M RRLKME VEV+EA
Sbjct: 420 FEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEA 479
Query: 480 SKKLLEAIC 488
+KKLL+ +
Sbjct: 480 TKKLLDEVS 488
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/482 (40%), Positives = 286/482 (59%), Gaps = 2/482 (0%)
Query: 8 GRTKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRD 67
G ++A + + LY +L + +V + LNQF+ V K ++ K LR
Sbjct: 56 GVRTSVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRK 115
Query: 68 RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHL-TY 126
+ A ++ + MEKR M +VSD AI LDL+ K +G++AAENYF +L ++KNH TY
Sbjct: 116 FRRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTY 175
Query: 127 GSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKA 186
G+L+NCYC EL EKA+A E M ELN +S+PFN++M++Y + PEK+P ++ MK
Sbjct: 176 GALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQ 235
Query: 187 SSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE 246
I P TY++WM++ ++ND+ G E++I+EM +D W TFSNLA+IY +AGL+E
Sbjct: 236 RGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYE 295
Query: 247 KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI 306
KA+ ALK +E + + ++ FL++LY EVYR+W SL+ A P N+SYL M+
Sbjct: 296 KADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVML 355
Query: 307 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD 366
Q + L DL G +K F EWES C YD+R+ N+ I Y K E AE++ + A ++
Sbjct: 356 QAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKG 415
Query: 367 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV 426
P +K ++ + L N LA+ LE A+ + +W SSE + F HFE+ KDV
Sbjct: 416 PFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDV 475
Query: 427 DGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEA 486
DGAE F +IL L E LI+TYAAA +TSP M RL +++EVSE + LL+
Sbjct: 476 DGAEDFCKILSN-WKPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLKT 534
Query: 487 IC 488
+C
Sbjct: 535 VC 536
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 341 bits (875), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 196/480 (40%), Positives = 284/480 (59%), Gaps = 11/480 (2%)
Query: 12 NIAKRSKKHLEEALYDRLFKKGS-SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKL 70
++ ++KKH ++Y +L G+ + + LNQF+ V K ++ K LR +
Sbjct: 30 SVPTKAKKH--RSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQ 87
Query: 71 YYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL 130
AL++ E ME++ + T SD AI L+L+AK +G++AAE YF L ++ KN TYGSLL
Sbjct: 88 PQRALEIFEWMERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLL 147
Query: 131 NCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIM 190
NCYC E KA+A E M +LN +S+PFN+LM +Y G PEK+PA++ MK SI
Sbjct: 148 NCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSIT 207
Query: 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250
P TY++W+++ ++ D+ G E+V++EMK +G W TF+NLA+IY++ GL+ KAE
Sbjct: 208 PCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEE 267
Query: 251 ALKELENRNAHRDL-SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309
ALK LEN N + D+ Y FLI LY N SEVYR+W L+ +PN N SYL M++ L
Sbjct: 268 ALKSLEN-NMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRAL 326
Query: 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA 369
L D+ G +K F EWES C TYD+R+ NV I +Y K+ E AE + A ++ +
Sbjct: 327 SKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFS 386
Query: 370 KTWEIFSDYYLRNGDMKLAVDCLEKAI-DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDG 428
K ++ + L+N LA+ E A+ D + W SSE I +F HFE+ KDVDG
Sbjct: 387 KARQLLMMHLLKNDQADLALKHFEAAVLDQDKN----WTWSSELISSFFLHFEEAKDVDG 442
Query: 429 AEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 488
AE F + L K L E + L++TY AAG+ P M +RL+ + + V E + LL IC
Sbjct: 443 AEEFCKTLTK-WSPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLLSKIC 501
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/420 (35%), Positives = 237/420 (56%), Gaps = 4/420 (0%)
Query: 24 ALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEK 83
A+Y ++ ++ LNQ+ K+ +++ KWE+ +K+LR K AL++ + M
Sbjct: 68 AIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNN 127
Query: 84 RG--MNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEK 141
RG + SD AI LDL+ KV+GI AE +F+ LPE K+ YGSLLN Y + EK
Sbjct: 128 RGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREK 187
Query: 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 201
AEALL M++ +PFN +MTLY +K+ A++ EMK I D Y+YN+W+
Sbjct: 188 AEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLS 247
Query: 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261
+ ++ + E V ++MK D + +WTTFS +A++Y++ G EKAE AL+++E R
Sbjct: 248 SCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITG 307
Query: 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 321
R+ Y +L++LYG GN E+YR+W + P+ N+ Y ++ LV + D+ GAEK
Sbjct: 308 RNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKV 367
Query: 322 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381
++EW ++YD R+ N+++ AY K +LE AE L + G P++ TWEI + + R
Sbjct: 368 YEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTR 427
Query: 382 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441
+ A+ CL A + G W P + F + E+E DV E LE+L+++ D
Sbjct: 428 KRCISEALTCLRNAF-SAEG-SSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGD 485
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 264/461 (57%), Gaps = 12/461 (2%)
Query: 25 LYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME-K 83
L ++ K S+ V++R+ + + V K+E+ +++LR K Y AL++ E M +
Sbjct: 67 LLSLVYTKRSAVVTIRK----WKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQ 122
Query: 84 RGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAE 143
+ D A+HLDL++K++G+++AE +F D+P+ + H SLL+ Y + +++KAE
Sbjct: 123 EDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAE 182
Query: 144 ALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL 203
AL EKM E S +P+N ++++Y G EK+P +I+E+K + PD TYN+W+ A
Sbjct: 183 ALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAF 241
Query: 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD 263
A+ ND+ GAE+V + K + ++ DW T+S L ++Y + EKA ALKE+E + ++
Sbjct: 242 ASGNDVEGAEKVYLKAKEE-KLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKN 300
Query: 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 323
AY LI+L+ G+ V W+ ++ +F + YL+MI +V L + A+ +
Sbjct: 301 RVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYD 360
Query: 324 EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383
EWES T D R+ N+++ Y + E+ ER +G +P+ TWEI + YL+
Sbjct: 361 EWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRK 420
Query: 384 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443
DM+ +DC KAID+ + KW + ++ + E++ +V GAE + +L+KA +
Sbjct: 421 DMEKVLDCFGKAIDSVK----KWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKA-GYV 475
Query: 444 GVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLL 484
+++ L+RTYA AG + ++ R+ + VE+ E +K+L+
Sbjct: 476 NTQLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELI 516
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 240/463 (51%), Gaps = 4/463 (0%)
Query: 24 ALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEK 83
LY ++ G SV +L +++ K+V E+ + LR RK + AL++S+ M +
Sbjct: 26 TLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNE 85
Query: 84 RGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKA 142
G+ + ++ A+HLDL+ +V G AE YF +L E KN TYG+LLNCY ++ EK+
Sbjct: 86 TGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKS 145
Query: 143 EALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRA 202
EKMKE+ SS+ +N++M LY G EK+P +++EMK ++ PD+Y+Y + + A
Sbjct: 146 LLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINA 205
Query: 203 LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR 262
A+ D+ + +M+R + DW T++ A Y++ G ++A LK ENR +
Sbjct: 206 FGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKK 265
Query: 263 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF 322
D Y LITLY + G EV R+W + N YL ++Q LV + L AE+
Sbjct: 266 DGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVL 325
Query: 323 KEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN 382
EW+S YD RV N +I Y + E AE + E RRG ++WE+ + Y
Sbjct: 326 TEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEK 385
Query: 383 GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD 442
G ++ A C++ A+ G KW P + + + E + E F+ L+ +
Sbjct: 386 GTLENAFKCMKTALGVEVG-SRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCI-G 443
Query: 443 LGVEVFEPLIRT-YAAAGRTSPVMLRRLKMEKVEVSEASKKLL 484
+ +++ L++ GR +L+R+K +K+E+ E + +L
Sbjct: 444 VNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/451 (30%), Positives = 230/451 (50%), Gaps = 8/451 (1%)
Query: 29 LFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME-KRGMN 87
+ +K SV L + + S V E+ K+L Y AL++ E ME ++ +
Sbjct: 44 ILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIE 103
Query: 88 KTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLT----YGSLLNCYCKELMTEKAE 143
+V D A+ LDL+ K G+ E YF L +S + Y LL Y K M ++AE
Sbjct: 104 FSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAE 163
Query: 144 ALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL 203
AL+EK+ L + PFN +M LY +G EK+ ++ MK + I + +YN+WM A
Sbjct: 164 ALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNAC 223
Query: 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD 263
V+ ++ E V +EM D V W++ LA++Y+++G EKA L++ E +
Sbjct: 224 CEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSN 283
Query: 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 323
Y FLITLY GN V R+W + + ++Y+ ++ LV DL AE+ F
Sbjct: 284 RLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFS 343
Query: 324 EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383
EWE+ C YD+RV+NV++GAY + G + AE L RG PN KTWEI + +++
Sbjct: 344 EWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCE 403
Query: 384 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443
+M+ A+D + + R W PS + +FE+E+ ++ A ++ L + +
Sbjct: 404 NMEKAIDAMHQVFVLMR--RCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHR-LGLA 460
Query: 444 GVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 474
+ ++ L+R + A R + + +K++K+
Sbjct: 461 SLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 227/416 (54%), Gaps = 6/416 (1%)
Query: 23 EALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENM- 81
+ L R+ + G S+ + L+ +L V E+ +K LR + AL++S+ M
Sbjct: 38 DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMS 97
Query: 82 EKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEK 141
E R + D AI LDL+AKV G+ AE +F +P +N+ YG+LLNCY + + K
Sbjct: 98 EHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHK 157
Query: 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 201
AE + ++MKEL +P+N ++ LY +TG + +++EM+ ++ PD +T N +
Sbjct: 158 AEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLH 217
Query: 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR-NA 260
A + V+D+ G E+ + + D + DW T+++ A+ Y++AGL EKA L++ E NA
Sbjct: 218 AYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNA 277
Query: 261 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 320
+ AY+ L++ YG G EVYR+W SL N Y+++I L+ + D+ EK
Sbjct: 278 QKRKHAYEVLMSFYGAAGKKEEVYRLW-SLYKELDGFYNTGYISVISALLKMDDIEEVEK 336
Query: 321 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380
+EWE+G + +DIR+ +++I Y K+G +E AEE+ ++ + TWE + Y
Sbjct: 337 IMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYK 396
Query: 381 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 436
G M+ AV+ ++AI+ + W P + + + + E ++D++G L +L
Sbjct: 397 MAGKMEKAVEKWKRAIEVSKPG---WRPHQVVLMSCVDYLEGQRDMEGLRKILRLL 449
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 161/296 (54%), Gaps = 4/296 (1%)
Query: 57 EVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVD 115
E+ + K+LR + Y AL+++E M + +K + +D A +DL++KV GIDAAE YF
Sbjct: 89 ELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEG 148
Query: 116 LPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELN-LGFSSMPFNSLMTLYAKTGHP 174
L SK TY SLL+ Y TE+AEAL +++ E + L F ++ +N +MTLY G
Sbjct: 149 LDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQV 208
Query: 175 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN 234
EK+P +I+ +K + PD +TYN+W+ + AA +I +++EEM+ D W + +
Sbjct: 209 EKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHDASSNEGWVRYID 268
Query: 235 LASIYVEAGLFEKAERALK-ELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 293
L SIY+ + AE L E E + R+ Y FL+ L+ GN + +IW+SLR
Sbjct: 269 LTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNT 328
Query: 294 FPNTANISYLNMIQVLVNLKDLPGAEKCFKEW-ESGCATYDIRVTNVMIGAYAKEG 348
++ SY+ ++ + L L AE+ +W ES +D ++ A+ G
Sbjct: 329 NQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDASACLRILNAFRDVG 384
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/436 (28%), Positives = 211/436 (48%), Gaps = 24/436 (5%)
Query: 40 RQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGM-NKTVSDQAIHLD 98
RQQ NQ S RV +KKLRD AL++SE M K + N D A L
Sbjct: 60 RQQGNQVNPSHVRVI-------IKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLH 112
Query: 99 LVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTE-KAEALLEKMKELNLGFS 157
L+ V G++ AE +F +P+ ++ Y SLLN Y + T KAEA +KM++L L
Sbjct: 113 LIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLR 172
Query: 158 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 217
+P+N++M+LY+ + EK+ ++ EMK + + D+ T N ++ +AV D++ E+ +
Sbjct: 173 PVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLN 232
Query: 218 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-SAYQFLITLYGQ 276
+ + + +W T ++A Y+ A KA + L+ E + L SAY L+ LYG+
Sbjct: 233 KWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGE 292
Query: 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRV 336
GN EV R+W+ + N Y +I+ L+ + D+ GAE+ +K WES +D R+
Sbjct: 293 AGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRI 352
Query: 337 TNVMIGAYAKEGRLENAEEL---KERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLE 393
++ Y G E AE+L K RR P E + D ++ D+K + L
Sbjct: 353 PTMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPLLEQWGD-QMKPSDLKCLIKNLR 411
Query: 394 KAIDTGRG-DGGKWVPSSETIRTFMRHF-------EQEKDVDGAEGFLEILKKAVDDLGV 445
+ + +W+ + ++ + E ++ AE + E + + + D V
Sbjct: 412 DSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEEAEKYFENIPENMKDYSV 471
Query: 446 EVFEPLIRTYAAAGRT 461
V L+ +YA + +
Sbjct: 472 YV--ALLSSYAKSDKN 485
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | ||||||
| 255573975 | 490 | pentatricopeptide repeat-containing prot | 1.0 | 1.0 | 0.806 | 0.0 | |
| 225468646 | 489 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 1.0 | 0.804 | 0.0 | |
| 224119780 | 490 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.793 | 0.0 | |
| 356526773 | 490 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 1.0 | 0.767 | 0.0 | |
| 297837423 | 491 | pentatricopeptide repeat-containing prot | 0.997 | 0.995 | 0.708 | 0.0 | |
| 15219808 | 491 | pentatricopeptide repeat-containing prot | 0.993 | 0.991 | 0.705 | 0.0 | |
| 449434959 | 489 | PREDICTED: pentatricopeptide repeat-cont | 0.993 | 0.995 | 0.737 | 0.0 | |
| 296083491 | 444 | unnamed protein product [Vitis vinifera] | 0.906 | 1.0 | 0.730 | 0.0 | |
| 115457716 | 524 | Os04g0320200 [Oryza sativa Japonica Grou | 0.983 | 0.919 | 0.594 | 1e-174 | |
| 116309055 | 524 | H0107B07.5 [Oryza sativa Indica Group] | 0.983 | 0.919 | 0.592 | 1e-174 |
| >gi|255573975|ref|XP_002527905.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532680|gb|EEF34462.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/490 (80%), Positives = 433/490 (88%)
Query: 1 MAMPQRFGRTKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGD 60
MAMPQ FGRTKN+AKRSKK+LEEALY RLFK+GSS+V VR+QLNQFLKS KRV+KWEVGD
Sbjct: 1 MAMPQLFGRTKNVAKRSKKYLEEALYFRLFKEGSSEVKVREQLNQFLKSSKRVYKWEVGD 60
Query: 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETS 120
TLKKLR R LYYPALKLSE M KRGMNKTVSDQAIHLDLVAK +GI AAE +F+DLPETS
Sbjct: 61 TLKKLRSRGLYYPALKLSEAMSKRGMNKTVSDQAIHLDLVAKTRGIPAAEIFFIDLPETS 120
Query: 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAI 180
KNHLTYG+LLNCYC +LMTE+AEAL+EKMKELNLG SSM +NSLMTLY K G PE+IP I
Sbjct: 121 KNHLTYGALLNCYCNQLMTEEAEALMEKMKELNLGLSSMSYNSLMTLYTKIGQPERIPGI 180
Query: 181 IQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV 240
IQEMK+ SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTT+SNLASIYV
Sbjct: 181 IQEMKSDSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTYSNLASIYV 240
Query: 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 300
+A LFEKAE+ LKELE RN HRD SA+QFLITLYG+ GNL E+YRIWRSLRLAFP T+NI
Sbjct: 241 DAQLFEKAEKTLKELEKRNVHRDHSAFQFLITLYGRIGNLHELYRIWRSLRLAFPKTSNI 300
Query: 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360
SYLNMIQVLVNLKDLPGAEKCF+EWES C+ YDIRV NV+I AYAK+G LE AEELKERA
Sbjct: 301 SYLNMIQVLVNLKDLPGAEKCFREWESNCSGYDIRVANVLIKAYAKKGLLEKAEELKERA 360
Query: 361 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 420
RGA PNAKTWEIFSDYY NGD+KL+V+CL AI GRGDG KW+PS E + +FM HF
Sbjct: 361 IGRGAKPNAKTWEIFSDYYFENGDIKLSVECLANAISKGRGDGQKWIPSPEVVASFMAHF 420
Query: 421 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480
EQ+KDVDGAEGF+EILKKA DD+ VFE LIRTYAAAGRTS V+ RRLKME VEVSEA
Sbjct: 421 EQQKDVDGAEGFIEILKKATDDVEANVFESLIRTYAAAGRTSQVLRRRLKMENVEVSEAG 480
Query: 481 KKLLEAICVE 490
+KLLE ICVE
Sbjct: 481 QKLLEMICVE 490
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225468646|ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/490 (80%), Positives = 435/490 (88%), Gaps = 1/490 (0%)
Query: 1 MAMPQRFGRTKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGD 60
MAMPQ RTKNIAKRSKK+LEEALYDRLFK GSS+VSVRQQLN FLKS KRVFKWEVGD
Sbjct: 1 MAMPQ-LSRTKNIAKRSKKYLEEALYDRLFKDGSSEVSVRQQLNHFLKSSKRVFKWEVGD 59
Query: 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETS 120
T+KKLRDRK +YPALKLSE M KRGMN T+SDQAI+LDL+ K +G+ AAENYF+DLPETS
Sbjct: 60 TVKKLRDRKRFYPALKLSETMAKRGMNMTISDQAIYLDLITKTRGVAAAENYFIDLPETS 119
Query: 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAI 180
KNHLTYG+LLNCYCKEL+TEKAEAL+E+MKEL LG SSMP+NSLMTLY K G PEKIP I
Sbjct: 120 KNHLTYGALLNCYCKELLTEKAEALMERMKELKLGLSSMPYNSLMTLYTKIGQPEKIPTI 179
Query: 181 IQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV 240
IQE+K+ IMPDSYTYN+WMRALAAVNDISG ERVIEEMKRDGRVA+DWTT+SNLASIYV
Sbjct: 180 IQELKSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWTTYSNLASIYV 239
Query: 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 300
+AG+FEKAE+ALKELE RNA RDL+A+QFLITLYG+ GNL EVYR+WRSLRLAFP TAN+
Sbjct: 240 DAGVFEKAEKALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANV 299
Query: 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360
SYLNMIQVLVNLKDLPGAEKCF+EWESGC+ YDIRV N +IGAYAK+G LE AEELKE A
Sbjct: 300 SYLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHA 359
Query: 361 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 420
RRRGA PNAKTWEIF Y+L+N +MK AVDC+ AI TGRGDG KWVPS E I FM+HF
Sbjct: 360 RRRGAKPNAKTWEIFLAYHLKNREMKQAVDCVANAISTGRGDGQKWVPSPEIIGVFMQHF 419
Query: 421 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480
EQEKDVDGAEGFLEILK V+DLGVEVFE LIR YAAAGRTSPVM RRLKME VEVS++
Sbjct: 420 EQEKDVDGAEGFLEILKSTVEDLGVEVFESLIRIYAAAGRTSPVMRRRLKMENVEVSDSC 479
Query: 481 KKLLEAICVE 490
KKLLE + VE
Sbjct: 480 KKLLEEVSVE 489
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119780|ref|XP_002331159.1| predicted protein [Populus trichocarpa] gi|118487894|gb|ABK95769.1| unknown [Populus trichocarpa] gi|222873242|gb|EEF10373.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/490 (79%), Positives = 435/490 (88%)
Query: 1 MAMPQRFGRTKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGD 60
MAMPQ +GRTK++ KRSKK+LEEALY RLFK+GSS+VSVRQQLNQFLKS KRVFKWEVGD
Sbjct: 1 MAMPQLYGRTKSVTKRSKKYLEEALYVRLFKEGSSEVSVRQQLNQFLKSSKRVFKWEVGD 60
Query: 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETS 120
T+KKLR R LYYPA+KLSE M RGMNKTVSDQAIHLDLVAK +GI AAENYF+DLPETS
Sbjct: 61 TIKKLRSRNLYYPAVKLSETMSSRGMNKTVSDQAIHLDLVAKTRGIPAAENYFIDLPETS 120
Query: 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAI 180
KN TYG+LLNCYCKELMTE+AEAL+EKMKELNLG SSM +NSLMTLY K G PE+IPAI
Sbjct: 121 KNLRTYGALLNCYCKELMTEEAEALIEKMKELNLGLSSMSYNSLMTLYTKVGQPERIPAI 180
Query: 181 IQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV 240
IQEMKA ++MPDSYTYNVWMRALAAVNDISG ERVIEEMKRDGRVAA+WTT+SNLASIYV
Sbjct: 181 IQEMKADNVMPDSYTYNVWMRALAAVNDISGVERVIEEMKRDGRVAANWTTYSNLASIYV 240
Query: 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 300
+AG F+KAE+ALKELE NA++DL A+QFLITLYG+TG L EVYRIWRSLRLAFP TANI
Sbjct: 241 DAGYFDKAEKALKELEKINANKDLFAFQFLITLYGRTGKLIEVYRIWRSLRLAFPKTANI 300
Query: 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360
SYLNMIQVLVNLKD+PGAEKCF+EWESGC+TYDIRV NV+I AYAKEG ++ AEELKERA
Sbjct: 301 SYLNMIQVLVNLKDVPGAEKCFREWESGCSTYDIRVANVVISAYAKEGLVDKAEELKERA 360
Query: 361 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 420
RRRGA PN+KTWEIF DYYL+NGD+KL VDC+ A+ GRG+G KWVPS + + M HF
Sbjct: 361 RRRGAKPNSKTWEIFCDYYLKNGDVKLGVDCIANAVSAGRGNGQKWVPSPVIVGSLMAHF 420
Query: 421 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480
EQ+KDVDGAE +EILKKAVDD+ VEVFE LIRTYAAAGR S +M RRLKME VEVS+
Sbjct: 421 EQQKDVDGAEDLIEILKKAVDDVAVEVFESLIRTYAAAGRKSQLMRRRLKMENVEVSDDC 480
Query: 481 KKLLEAICVE 490
+KLLEAICVE
Sbjct: 481 QKLLEAICVE 490
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526773|ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/490 (76%), Positives = 417/490 (85%)
Query: 1 MAMPQRFGRTKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGD 60
M++ Q +GR+K++ KRSKK+LEEALY +LFK GSS + VRQ LN F+KS+KRV+KWEVGD
Sbjct: 1 MSIMQLYGRSKSVVKRSKKYLEEALYMKLFKDGSSQLIVRQSLNNFVKSRKRVYKWEVGD 60
Query: 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETS 120
TLKKLRDRKLY PALKLSE M KR M KTVSD AIHLDL+AK +GI AAENYFV LPE S
Sbjct: 61 TLKKLRDRKLYQPALKLSETMAKRNMIKTVSDHAIHLDLLAKARGITAAENYFVSLPEPS 120
Query: 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAI 180
KNHL YG+LLNCYCKELMTEK+E L+EKMKEL+L SSMP+NSLMTLY K G PEKIP++
Sbjct: 121 KNHLCYGALLNCYCKELMTEKSEGLMEKMKELSLPLSSMPYNSLMTLYTKVGQPEKIPSL 180
Query: 181 IQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV 240
IQEMKAS++M DSYTYNVWMRALAAVNDISG ERV +EMKR G+V DWTT+SNLASI+V
Sbjct: 181 IQEMKASNVMLDSYTYNVWMRALAAVNDISGVERVHDEMKRGGQVTGDWTTYSNLASIFV 240
Query: 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 300
+AGLF+KAE ALKELE RNA +DL+AYQFLITLYG+TGNL EVYR+WRSLRLAFP TANI
Sbjct: 241 DAGLFDKAEVALKELEKRNAFKDLTAYQFLITLYGRTGNLYEVYRVWRSLRLAFPKTANI 300
Query: 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360
SYLNMIQVLVNLKDLPGAEKCF+EWE GC TYDIRV NV+I AY K LE AEELKERA
Sbjct: 301 SYLNMIQVLVNLKDLPGAEKCFREWECGCPTYDIRVANVLIRAYVKLDMLEKAEELKERA 360
Query: 361 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 420
RRRGA PNAKT EIF DYYL GD KLAVD L +AI GRG+G KWVPSS I MRHF
Sbjct: 361 RRRGAKPNAKTLEIFMDYYLLKGDFKLAVDYLNEAISMGRGNGEKWVPSSRIISIMMRHF 420
Query: 421 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480
EQEKDVDGAE FLEILKK+V+ GVEVFE LIRTYAAAGR S M RRLKME VEVSE +
Sbjct: 421 EQEKDVDGAEEFLEILKKSVESPGVEVFESLIRTYAAAGRISSAMQRRLKMENVEVSEGT 480
Query: 481 KKLLEAICVE 490
+KLLEAI VE
Sbjct: 481 QKLLEAISVE 490
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297837423|ref|XP_002886593.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332434|gb|EFH62852.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/491 (70%), Positives = 412/491 (83%), Gaps = 2/491 (0%)
Query: 1 MAMPQRFGRTKNIAKRS-KKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVG 59
MAM + R++++ KRS KK++EE LY RLFK G ++V VRQQLNQFLK K VFKWEVG
Sbjct: 1 MAM-RHLSRSRDVTKRSTKKYIEEPLYHRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVG 59
Query: 60 DTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET 119
DT+KKLR+R LYYPALKLSE ME+RGMNKTVSDQAIHLDLVAK +GI A ENYFVDLPET
Sbjct: 60 DTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKARGITAGENYFVDLPET 119
Query: 120 SKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPA 179
SK LTYGSLLNCYCKEL+TEKAE LL KMKELN+ SSM +NSLMTLY KTG EK+PA
Sbjct: 120 SKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGQTEKVPA 179
Query: 180 IIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239
+IQE+KA ++MPDSYTYNVWMRALAA NDISG ERVIEEM RDGRVA DWTT+SN+ASIY
Sbjct: 180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239
Query: 240 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 299
V+AGL +KAE+AL+ELE +N RD +AYQFLITLYG+ G L+EVYRIWRSLRLA P T+N
Sbjct: 240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAMPKTSN 299
Query: 300 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 359
++YLNMIQVLV L DLPGAE FKEW++ C+TYDIR+ NV+IGAYAKEG +E A+ELKE+
Sbjct: 300 VAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAKEGLIEKAKELKEK 359
Query: 360 ARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419
A RRG NAKTWEIF DYY+++GDM A++C+ KA+ G+GDGGKW+PS ET+RT M +
Sbjct: 360 APRRGGKANAKTWEIFMDYYVKSGDMAHALECMSKAVSIGKGDGGKWIPSQETVRTLMSY 419
Query: 420 FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEA 479
FEQ+KDV+GAE LEILK D++G E+FE LIRTYAAAG++ P M RRLKME VEV+E
Sbjct: 420 FEQKKDVNGAENLLEILKNGTDNIGAEIFESLIRTYAAAGKSHPAMRRRLKMENVEVNEV 479
Query: 480 SKKLLEAICVE 490
+KKLL+ + E
Sbjct: 480 TKKLLDEVSQE 490
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219808|ref|NP_176276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75097554|sp|O22714.1|PPR86_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g60770 gi|2462744|gb|AAB71963.1| Hypothetical protein [Arabidopsis thaliana] gi|27754491|gb|AAO22693.1| unknown protein [Arabidopsis thaliana] gi|28393975|gb|AAO42395.1| unknown protein [Arabidopsis thaliana] gi|332195609|gb|AEE33730.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/489 (70%), Positives = 411/489 (84%), Gaps = 2/489 (0%)
Query: 1 MAMPQRFGRTKNIAKRS-KKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVG 59
MAM + R++++ KRS KK++EE LY+RLFK G ++V VRQQLNQFLK K VFKWEVG
Sbjct: 1 MAM-RHLSRSRDVTKRSTKKYIEEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVG 59
Query: 60 DTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET 119
DT+KKLR+R LYYPALKLSE ME+RGMNKTVSDQAIHLDLVAK + I A ENYFVDLPET
Sbjct: 60 DTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPET 119
Query: 120 SKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPA 179
SK LTYGSLLNCYCKEL+TEKAE LL KMKELN+ SSM +NSLMTLY KTG EK+PA
Sbjct: 120 SKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPA 179
Query: 180 IIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239
+IQE+KA ++MPDSYTYNVWMRALAA NDISG ERVIEEM RDGRVA DWTT+SN+ASIY
Sbjct: 180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239
Query: 240 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 299
V+AGL +KAE+AL+ELE +N RD +AYQFLITLYG+ G L+EVYRIWRSLRLA P T+N
Sbjct: 240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSN 299
Query: 300 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 359
++YLNMIQVLV L DLPGAE FKEW++ C+TYDIR+ NV+IGAYA+EG ++ A ELKE+
Sbjct: 300 VAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEK 359
Query: 360 ARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419
A RRG NAKTWEIF DYY+++GDM A++C+ KA+ G+GDGGKW+PS ET+R M +
Sbjct: 360 APRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSY 419
Query: 420 FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEA 479
FEQ+KDV+GAE LEILK D++G E+FEPLIRTYAAAG++ P M RRLKME VEV+EA
Sbjct: 420 FEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEA 479
Query: 480 SKKLLEAIC 488
+KKLL+ +
Sbjct: 480 TKKLLDEVS 488
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434959|ref|XP_004135263.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770-like [Cucumis sativus] gi|449478594|ref|XP_004155363.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g60770-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/492 (73%), Positives = 409/492 (83%), Gaps = 5/492 (1%)
Query: 1 MAMP-QRFGRTKNIAKRS-KKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEV 58
MA P Q+F +K++AKRS +K+LEEALY RLFK G S+ SVR QLN+F+KS KRVFKWEV
Sbjct: 1 MASPLQKFRPSKDLAKRSAEKYLEEALYIRLFKDGGSEKSVRLQLNKFIKSHKRVFKWEV 60
Query: 59 GDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE 118
GDTL+KLRDRKLYYPALKLSE M KRGMNKTVSDQAIHLDLVAK +GIDAAENYFV LPE
Sbjct: 61 GDTLRKLRDRKLYYPALKLSEIMAKRGMNKTVSDQAIHLDLVAKARGIDAAENYFVSLPE 120
Query: 119 TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIP 178
+SKNHL+Y SLLNCYCKEL+TEKAEAL EK+KELNL + +P+NSLMTLY+K G P+K+
Sbjct: 121 SSKNHLSYSSLLNCYCKELLTEKAEALFEKIKELNLPVTPVPYNSLMTLYSKIGRPDKVC 180
Query: 179 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI 238
IIQEMKA+++ D YTY VWMRALAA+NDISG ERVI+EMKRDG V DWTT+SNLASI
Sbjct: 181 TIIQEMKAANVTFDPYTYIVWMRALAALNDISGVERVIDEMKRDG-VKGDWTTYSNLASI 239
Query: 239 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 298
YV A +FEKA +ALK+LE N RDL +QFLITLYGQ G+L+EVYR+WRSLRLAFP TA
Sbjct: 240 YVNANMFEKAAKALKDLEKINTRRDLIGFQFLITLYGQIGDLTEVYRVWRSLRLAFPRTA 299
Query: 299 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKE 358
NISYLNMIQ L LKDLPGAEKCFKEWESG TYDIR+ N +IGAY K G LE A LKE
Sbjct: 300 NISYLNMIQTLTKLKDLPGAEKCFKEWESGSPTYDIRIPNALIGAYTKGGLLEKAMALKE 359
Query: 359 RARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR 418
RA RRGA PNAKTWE F +YYL+NGD KLA DC+ KAI G+GD GKW+PS E I++FM
Sbjct: 360 RALRRGARPNAKTWEFFLNYYLKNGDFKLAGDCVAKAI--GKGDRGKWIPSPEIIKSFMS 417
Query: 419 HFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE 478
HFEQEKDVDGAE FLEI+KK VD L EVFE LIRTY+AAGRTS M RRLKME VEVSE
Sbjct: 418 HFEQEKDVDGAESFLEIVKKTVDSLESEVFESLIRTYSAAGRTSSSMSRRLKMENVEVSE 477
Query: 479 ASKKLLEAICVE 490
A KKLL I +E
Sbjct: 478 ACKKLLNKISIE 489
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083491|emb|CBI23460.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/490 (73%), Positives = 397/490 (81%), Gaps = 46/490 (9%)
Query: 1 MAMPQRFGRTKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGD 60
MAMPQ RTKNIAKRSKK+LEEALYDRLFK GSS+VSVRQQLN FLKS KRVFKWEVGD
Sbjct: 1 MAMPQ-LSRTKNIAKRSKKYLEEALYDRLFKDGSSEVSVRQQLNHFLKSSKRVFKWEVGD 59
Query: 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETS 120
T+KKLRDRK +YPALKLSE M KRGMN T+SDQAI+LDL+ K +G+ AAENYF+DLPETS
Sbjct: 60 TVKKLRDRKRFYPALKLSETMAKRGMNMTISDQAIYLDLITKTRGVAAAENYFIDLPETS 119
Query: 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAI 180
KNHLTYG+LLNCYCKEL+TEKAEAL+E+MKEL LG SSMP+NSLMTLY K G PEKIP I
Sbjct: 120 KNHLTYGALLNCYCKELLTEKAEALMERMKELKLGLSSMPYNSLMTLYTKIGQPEKIPTI 179
Query: 181 IQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV 240
IQE+K+ IMPDSYTYN+WMRALAAVNDISG ERVIEEMKRDGRVA+DWTT+SNLASIYV
Sbjct: 180 IQELKSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWTTYSNLASIYV 239
Query: 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 300
+AG+FEKAE+ALKELE RNA RDL+A+QFLITLYG+ GNL EVYR+WRSLRLAFP TAN+
Sbjct: 240 DAGVFEKAEKALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANV 299
Query: 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360
SYLNMIQVLVNLKDLPGAEKCF+EWESGC+ YDIRV N +IGAYAK+G LE AEELKE A
Sbjct: 300 SYLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHA 359
Query: 361 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 420
RRRGA PNAKTWEIF Y+L+N +MK AVDC+ AI T
Sbjct: 360 RRRGAKPNAKTWEIFLAYHLKNREMKQAVDCVANAIST---------------------- 397
Query: 421 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480
GVEVFE LIR YAAAGRTSPVM RRLKME VEVS++
Sbjct: 398 -----------------------GVEVFESLIRIYAAAGRTSPVMRRRLKMENVEVSDSC 434
Query: 481 KKLLEAICVE 490
KKLLE + VE
Sbjct: 435 KKLLEEVSVE 444
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115457716|ref|NP_001052458.1| Os04g0320200 [Oryza sativa Japonica Group] gi|32490390|emb|CAE04700.1| OSJNBa0041M06.2 [Oryza sativa Japonica Group] gi|38344779|emb|CAE01505.2| OSJNBb0026L04.10 [Oryza sativa Japonica Group] gi|113564029|dbj|BAF14372.1| Os04g0320200 [Oryza sativa Japonica Group] gi|125543501|gb|EAY89640.1| hypothetical protein OsI_11170 [Oryza sativa Indica Group] gi|125589896|gb|EAZ30246.1| hypothetical protein OsJ_14297 [Oryza sativa Japonica Group] gi|215767374|dbj|BAG99602.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 309/520 (59%), Positives = 375/520 (72%), Gaps = 38/520 (7%)
Query: 9 RTKNIAKRS-KKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRD 67
R K++A+RS KK+++EALY RLF++GS+ +VR++++ FL S+KR FKWEVG +++LR
Sbjct: 4 RVKDVARRSSKKYVDEALYRRLFRRGSTPQAVREEVDGFLDSRKRAFKWEVGVCVRRLRK 63
Query: 68 RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYG 127
+ LY PALKLSE M +RGMN TVSDQAI LDLVAK +GI AAE YF+DLPETSK HLTYG
Sbjct: 64 QALYRPALKLSEVMARRGMNPTVSDQAIRLDLVAKSRGIAAAEKYFLDLPETSKTHLTYG 123
Query: 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187
+LLNCYCK+LMTEKAEAL+ KMKELN F++M +NSLMTLY K EK+P++IQ+MKA
Sbjct: 124 ALLNCYCKDLMTEKAEALMGKMKELNFAFTAMCYNSLMTLYTKVNQHEKVPSVIQDMKAD 183
Query: 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK 247
++PD YTYNVWMRALAA DI G ERVIEEMKRDGRV DWTT+SNLASIYV+AGLFEK
Sbjct: 184 DVLPDIYTYNVWMRALAARVDIKGVERVIEEMKRDGRVTPDWTTYSNLASIYVDAGLFEK 243
Query: 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ 307
AE ALKELE N DL AYQFLITLY +T NL EV+R+WRSL+ P AN+SYLNMIQ
Sbjct: 244 AEAALKELEKWNTSNDLEAYQFLITLYARTQNLVEVHRVWRSLKRNQPRRANMSYLNMIQ 303
Query: 308 VLVNLKDLPGAEKCFKEWES-------------GCA------------------------ 330
L NLKDLPGAE CFKEWE+ G A
Sbjct: 304 ALANLKDLPGAEACFKEWEAQYINPPKTNTKAPGTAETSSNESDVKATKDKGTDGELKHP 363
Query: 331 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVD 390
YDIRV N MI AY EG + A +K+RA+ RG NAKTWEIF ++YL+ GD+K+
Sbjct: 364 KYDIRVANAMIKAYITEGMFDKAVAVKKRAKMRGGRLNAKTWEIFMEHYLKEGDLKMVHW 423
Query: 391 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450
C ++AI G G WVP E T M +FE+ KDVDGAE F+E+LKK DLG VFEP
Sbjct: 424 CADRAIKKGHSAGRIWVPPHEVTETLMDYFEKNKDVDGAEKFVEVLKKVQKDLGTVVFEP 483
Query: 451 LIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE 490
L+RTYAAAG+ P M RLK+E VEVSE + KLL+++C++
Sbjct: 484 LVRTYAAAGKKLPGMRHRLKIENVEVSEETAKLLDSVCID 523
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116309055|emb|CAH66166.1| H0107B07.5 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 308/520 (59%), Positives = 374/520 (71%), Gaps = 38/520 (7%)
Query: 9 RTKNIAKRS-KKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRD 67
R K++A+RS KK+++EALY RLF++GS+ +VR++++ FL S+KR FKWEVG +++LR
Sbjct: 4 RVKDVARRSSKKYVDEALYRRLFRRGSTPQAVREEVDGFLDSRKRAFKWEVGVCVRRLRK 63
Query: 68 RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYG 127
+ LY PALKLSE M +RGMN TVSDQAI LDLVAK +GI AAE YF+DLPETSK HLTYG
Sbjct: 64 QALYRPALKLSEVMARRGMNPTVSDQAIRLDLVAKSRGIAAAEKYFLDLPETSKTHLTYG 123
Query: 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187
+LLNCYCK+LMTEKAEAL+ KMKELN F++M +NSLMTLY K EK+P++IQ+MKA
Sbjct: 124 ALLNCYCKDLMTEKAEALMGKMKELNFAFTAMCYNSLMTLYTKVNQHEKVPSVIQDMKAD 183
Query: 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK 247
++PD YTYNVWMRALAA DI G ERVIEEMKRDGRV DWTT+SNLASIYV+AGLFEK
Sbjct: 184 DVLPDIYTYNVWMRALAARVDIKGVERVIEEMKRDGRVTPDWTTYSNLASIYVDAGLFEK 243
Query: 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ 307
AE ALKELE N DL AYQFLITLY +T NL EV+R+WRSL+ P AN+SYLNMIQ
Sbjct: 244 AEAALKELEKWNTSNDLEAYQFLITLYARTQNLVEVHRVWRSLKRNQPRRANMSYLNMIQ 303
Query: 308 VLVNLKDLPGAEKCFKEWES-------------GCA------------------------ 330
L NLKDLPGAE CFKEWE+ G A
Sbjct: 304 ALANLKDLPGAEACFKEWEAQYINPPKTNTKAPGTAETSSNESDVKATKDKGTDGELKHP 363
Query: 331 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVD 390
YDIRV N MI Y EG + A +K+RA+ RG NAKTWEIF ++YL+ GD+K+
Sbjct: 364 KYDIRVANAMIKEYITEGMFDQAVAVKKRAKMRGGRLNAKTWEIFMEHYLKEGDLKMVHW 423
Query: 391 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450
C ++AI G G WVP E T M +FE+ KDVDGAE F+E+LKK DLG VFEP
Sbjct: 424 CADRAIKKGHSAGRIWVPPHEVTETLMDYFEKNKDVDGAEKFVEVLKKVQKDLGTVVFEP 483
Query: 451 LIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE 490
L+RTYAAAG+ P M RLK+E VEVSE + KLL+++C++
Sbjct: 484 LVRTYAAAGKKLPGMRHRLKIENVEVSEETAKLLDSVCID 523
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | ||||||
| TAIR|locus:2036586 | 491 | AT1G60770 [Arabidopsis thalian | 0.991 | 0.989 | 0.682 | 1.1e-181 | |
| TAIR|locus:2204808 | 537 | AT1G02370 "AT1G02370" [Arabido | 0.975 | 0.890 | 0.388 | 3.2e-88 | |
| TAIR|locus:2141360 | 502 | AT4G01990 [Arabidopsis thalian | 0.957 | 0.934 | 0.393 | 4.9e-85 | |
| TAIR|locus:2204793 | 524 | AT1G02150 [Arabidopsis thalian | 0.848 | 0.793 | 0.338 | 1.3e-66 | |
| TAIR|locus:2140220 | 532 | AT4G02820 "AT4G02820" [Arabido | 0.916 | 0.843 | 0.305 | 2.6e-63 | |
| TAIR|locus:504955535 | 492 | AT4G21705 "AT4G21705" [Arabido | 0.934 | 0.930 | 0.298 | 2.2e-59 | |
| TAIR|locus:2051379 | 490 | AT2G20710 [Arabidopsis thalian | 0.840 | 0.840 | 0.294 | 2.4e-53 | |
| TAIR|locus:2146390 | 491 | AT5G27460 "AT5G27460" [Arabido | 0.928 | 0.926 | 0.293 | 1.7e-52 | |
| TAIR|locus:2010459 | 566 | AT1G28020 "AT1G28020" [Arabido | 0.869 | 0.752 | 0.266 | 1.3e-36 | |
| TAIR|locus:2184807 | 409 | AT5G09450 "AT5G09450" [Arabido | 0.667 | 0.799 | 0.296 | 9.2e-36 |
| TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1763 (625.7 bits), Expect = 1.1e-181, P = 1.1e-181
Identities = 333/488 (68%), Positives = 398/488 (81%)
Query: 1 MAMPQRFGRTKNIAKRS-KKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVG 59
MAM + R++++ KRS KK++EE LY+RLFK G ++V VRQQLNQFLK K VFKWEVG
Sbjct: 1 MAM-RHLSRSRDVTKRSTKKYIEEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVG 59
Query: 60 DTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET 119
DT+KKLR+R LYYPALKLSE ME+RGMNKTVSDQAIHLDLVAK + I A ENYFVDLPET
Sbjct: 60 DTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPET 119
Query: 120 SKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPA 179
SK LTYGSLLNCYCKEL+T SSM +NSLMTLY KTG EK+PA
Sbjct: 120 SKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPA 179
Query: 180 IIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239
+IQE+KA ++MPDSYTYNVWMRALAA NDISG ERVIEEM RDGRVA DWTT+SN+ASIY
Sbjct: 180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239
Query: 240 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 299
V+AGL +KAE+AL+ELE +N RD +AYQFLITLYG+ G L+EVYRIWRSLRLA P T+N
Sbjct: 240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSN 299
Query: 300 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 359
++YLNMIQVLV L DLPGAE FKEW++ C+TYDIR+ NV+IGAYA+EG ++ A ELKE+
Sbjct: 300 VAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEK 359
Query: 360 ARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419
A RRG NAKTWEIF DYY+++GDM A++C+ KA+ G+GDGGKW+PS ET+R M +
Sbjct: 360 APRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSY 419
Query: 420 FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEA 479
FEQ+KDV+GAE LEILK D++G E+FEPLIRTYAAAG++ P M RRLKME VEV+EA
Sbjct: 420 FEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEA 479
Query: 480 SKKLLEAI 487
+KKLL+ +
Sbjct: 480 TKKLLDEV 487
|
|
| TAIR|locus:2204808 AT1G02370 "AT1G02370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 187/481 (38%), Positives = 277/481 (57%)
Query: 9 RTKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDR 68
RT ++A + + LY +L + +V + LNQF+ V K ++ K LR
Sbjct: 58 RT-SVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKF 116
Query: 69 KLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHL-TYG 127
+ A ++ + MEKR M +VSD AI LDL+ K +G++AAENYF +L ++KNH TYG
Sbjct: 117 RRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYG 176
Query: 128 SLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187
+L+NCYC EL +S+PFN++M++Y + PEK+P ++ MK
Sbjct: 177 ALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQR 236
Query: 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK 247
I P TY++WM++ ++ND+ G E++I+EM +D W TFSNLA+IY +AGL+EK
Sbjct: 237 GISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEK 296
Query: 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ 307
A+ ALK +E + + ++ FL++LY EVYR+W SL+ A P N+SYL M+Q
Sbjct: 297 ADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQ 356
Query: 308 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367
+ L DL G +K F EWES C YD+R+ N+ I Y K E AE++ + A ++ P
Sbjct: 357 AMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGP 416
Query: 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVD 427
+K ++ + L N LA+ LE A+ + +W SSE + F HFE+ KDVD
Sbjct: 417 FSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVD 476
Query: 428 GAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAI 487
GAE F +IL L E LI+TYAAA +TSP M RL +++EVSE + LL+ +
Sbjct: 477 GAEDFCKILSNW-KPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLKTV 535
Query: 488 C 488
C
Sbjct: 536 C 536
|
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| TAIR|locus:2141360 AT4G01990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 189/480 (39%), Positives = 275/480 (57%)
Query: 12 NIAKRSKKHLEEALYDRLFKKGS-SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKL 70
++ ++KKH ++Y +L G+ + + LNQF+ V K ++ K LR +
Sbjct: 30 SVPTKAKKH--RSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQ 87
Query: 71 YYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL 130
AL++ E ME++ + T SD AI L+L+AK +G++AAE YF L ++ KN TYGSLL
Sbjct: 88 PQRALEIFEWMERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLL 147
Query: 131 NCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIM 190
NCYC E +S+PFN+LM +Y G PEK+PA++ MK SI
Sbjct: 148 NCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSIT 207
Query: 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250
P TY++W+++ ++ D+ G E+V++EMK +G W TF+NLA+IY++ GL+ KAE
Sbjct: 208 PCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEE 267
Query: 251 ALKELENRNAHRDL-SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309
ALK LEN N + D+ Y FLI LY N SEVYR+W L+ +PN N SYL M++ L
Sbjct: 268 ALKSLEN-NMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRAL 326
Query: 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA 369
L D+ G +K F EWES C TYD+R+ NV I +Y K+ E AE + A ++ +
Sbjct: 327 SKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFS 386
Query: 370 KTWEIFSDYYLRNGDMKLAVDCLEKAI-DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDG 428
K ++ + L+N LA+ E A+ D + W SSE I +F HFE+ KDVDG
Sbjct: 387 KARQLLMMHLLKNDQADLALKHFEAAVLDQDKN----WTWSSELISSFFLHFEEAKDVDG 442
Query: 429 AEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 488
AE F + L K L E + L++TY AAG+ P M +RL+ + + V E + LL IC
Sbjct: 443 AEEFCKTLTKW-SPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLLSKIC 501
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| TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 142/420 (33%), Positives = 227/420 (54%)
Query: 24 ALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEK 83
A+Y ++ ++ LNQ+ K+ +++ KWE+ +K+LR K AL++ + M
Sbjct: 68 AIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNN 127
Query: 84 RG--MNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXX 141
RG + SD AI LDL+ KV+GI AE +F+ LPE K+ YGSLLN Y +
Sbjct: 128 RGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREK 187
Query: 142 XXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 201
+PFN +MTLY +K+ A++ EMK I D Y+YN+W+
Sbjct: 188 AEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLS 247
Query: 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261
+ ++ + E V ++MK D + +WTTFS +A++Y++ G EKAE AL+++E R
Sbjct: 248 SCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITG 307
Query: 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 321
R+ Y +L++LYG GN E+YR+W + P+ N+ Y ++ LV + D+ GAEK
Sbjct: 308 RNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKV 367
Query: 322 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381
++EW ++YD R+ N+++ AY K +LE AE L + G P++ TWEI + + R
Sbjct: 368 YEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTR 427
Query: 382 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441
+ A+ CL A + G W P + F + E+E DV E LE+L+++ D
Sbjct: 428 KRCISEALTCLRNAF-SAEGSSN-WRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGD 485
|
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| TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 141/461 (30%), Positives = 254/461 (55%)
Query: 25 LYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME-K 83
L ++ K S+ V++R+ + + V K+E+ +++LR K Y AL++ E M +
Sbjct: 67 LLSLVYTKRSAVVTIRK----WKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQ 122
Query: 84 RGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXX 143
+ D A+HLDL++K++G+++AE +F D+P+ + H SLL+ Y + ++
Sbjct: 123 EDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAE 182
Query: 144 XXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL 203
S +P+N ++++Y G EK+P +I+E+K + PD TYN+W+ A
Sbjct: 183 ALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAF 241
Query: 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD 263
A+ ND+ GAE+V + K + ++ DW T+S L ++Y + EKA ALKE+E + ++
Sbjct: 242 ASGNDVEGAEKVYLKAKEE-KLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKN 300
Query: 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 323
AY LI+L+ G+ V W+ ++ +F + YL+MI +V L + A+ +
Sbjct: 301 RVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYD 360
Query: 324 EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383
EWES T D R+ N+++ Y + E+ ER +G +P+ TWEI + YL+
Sbjct: 361 EWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRK 420
Query: 384 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443
DM+ +DC KAID+ + KW + ++ + E++ +V GAE + +L+KA +
Sbjct: 421 DMEKVLDCFGKAIDSVK----KWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKA-GYV 475
Query: 444 GVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLL 484
+++ L+RTYA AG + ++ R+ + VE+ E +K+L+
Sbjct: 476 NTQLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELI 516
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| TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 138/462 (29%), Positives = 231/462 (50%)
Query: 25 LYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKR 84
LY ++ G SV +L +++ K+V E+ + LR RK + AL++S+ M +
Sbjct: 27 LYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNET 86
Query: 85 GMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXX 143
G+ + ++ A+HLDL+ +V G AE YF +L E KN TYG+LLNCY ++
Sbjct: 87 GVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSL 146
Query: 144 XXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL 203
SS+ +N++M LY G EK+P +++EMK ++ PD+Y+Y + + A
Sbjct: 147 LHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAF 206
Query: 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD 263
A+ D+ + +M+R + DW T++ A Y++ G ++A LK ENR +D
Sbjct: 207 GAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKD 266
Query: 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 323
Y LITLY + G EV R+W + N YL ++Q LV + L AE+
Sbjct: 267 GEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLT 326
Query: 324 EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383
EW+S YD RV N +I Y + E AE + E RRG ++WE+ + Y G
Sbjct: 327 EWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKG 386
Query: 384 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443
++ A C++ A+ G KW P + + + E + E F+ L+ + +
Sbjct: 387 TLENAFKCMKTALGVEVGSR-KWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIG-V 444
Query: 444 GVEVFEPLIRT-YAAAGRTSPVMLRRLKMEKVEVSEASKKLL 484
+++ L++ GR +L+R+K +K+E+ E + +L
Sbjct: 445 NKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486
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| TAIR|locus:2051379 AT2G20710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 123/418 (29%), Positives = 221/418 (52%)
Query: 23 EALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME 82
+ L R+ + G S+ + L+ +L V E+ +K LR + AL++S+ M
Sbjct: 38 DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMS 97
Query: 83 KRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXX 141
+ +++ + D AI LDL+AKV G+ AE +F +P +N+ YG+LLNCY + +
Sbjct: 98 EHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHK 157
Query: 142 XXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 201
+P+N ++ LY +TG + +++EM+ ++ PD +T N +
Sbjct: 158 AEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLH 217
Query: 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR-NA 260
A + V+D+ G E+ + + D + DW T+++ A+ Y++AGL EKA L++ E NA
Sbjct: 218 AYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNA 277
Query: 261 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 320
+ AY+ L++ YG G EVYR+W SL N Y+++I L+ + D+ EK
Sbjct: 278 QKRKHAYEVLMSFYGAAGKKEEVYRLW-SLYKELDGFYNTGYISVISALLKMDDIEEVEK 336
Query: 321 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380
+EWE+G + +DIR+ +++I Y K+G +E AEE+ ++ + TWE + Y
Sbjct: 337 IMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYK 396
Query: 381 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438
G M+ AV+ ++AI+ + G W P + + + + E ++D++G L +L +
Sbjct: 397 MAGKMEKAVEKWKRAIEVSK-PG--WRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSE 451
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| TAIR|locus:2146390 AT5G27460 "AT5G27460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 138/470 (29%), Positives = 228/470 (48%)
Query: 10 TKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRK 69
T ++A R+ L+E L +K SV L + + S V E+ K+L
Sbjct: 32 TSSVANRNS--LKEIL-----RKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSN 84
Query: 70 LYYPALKLSENME-KRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN----HL 124
Y AL++ E ME ++ + +V D A+ LDL+ K G+ E YF L +S +
Sbjct: 85 RYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKS 144
Query: 125 TYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEM 184
Y LL Y K M + PFN +M LY +G EK+ ++ M
Sbjct: 145 AYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMM 204
Query: 185 KASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL 244
K + I + +YN+WM A V+ ++ E V +EM D V W++ LA++Y+++G
Sbjct: 205 KGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGF 264
Query: 245 FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLN 304
EKA L++ E + Y FLITLY GN V R+W + + ++Y+
Sbjct: 265 DEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYIC 324
Query: 305 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 364
++ LV DL AE+ F EWE+ C YD+RV+NV++GAY + G + AE L RG
Sbjct: 325 VLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERG 384
Query: 365 ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424
PN KTWEI + +++ +M+ A+D + + R W PS + +FE+E+
Sbjct: 385 GTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRC--HWRPSHNIVMAIAEYFEKEE 442
Query: 425 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 474
++ A ++ L + + + ++ L+R + A R + + +K++K+
Sbjct: 443 KIEEATAYVRDLHR-LGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491
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| TAIR|locus:2010459 AT1G28020 "AT1G28020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 120/450 (26%), Positives = 205/450 (45%)
Query: 40 RQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGM-NKTVSDQAIHLD 98
RQQ NQ S RV +KKLRD AL++SE M K + N D A L
Sbjct: 60 RQQGNQVNPSHVRVI-------IKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLH 112
Query: 99 LVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTX-XXXXXXXXXXXXXXGFS 157
L+ V G++ AE +F +P+ ++ Y SLLN Y + T
Sbjct: 113 LIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLR 172
Query: 158 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 217
+P+N++M+LY+ + EK+ ++ EMK + + D+ T N ++ +AV D++ E+ +
Sbjct: 173 PVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLN 232
Query: 218 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-SAYQFLITLYGQ 276
+ + + +W T ++A Y+ A KA + L+ E + L SAY L+ LYG+
Sbjct: 233 KWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGE 292
Query: 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRV 336
GN EV R+W+ + N Y +I+ L+ + D+ GAE+ +K WES +D R+
Sbjct: 293 AGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRI 352
Query: 337 TNVMIGAYAKEGRLENAEEL---KERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLE 393
++ Y G E AE+L K RR P E + D ++ D+K + L
Sbjct: 353 PTMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPLLEQWGDQ-MKPSDLKCLIKNLR 411
Query: 394 KAIDTGRG-DGGKWVPSSETIRTFMRHF-------EQEKDVDGAEGFLEILKKAVDDLGV 445
+ + +W+ + ++ + E ++ AE + E + + + D V
Sbjct: 412 DSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEEAEKYFENIPENMKDYSV 471
Query: 446 EVFEPLIRTYAAAGRTSPVMLRRLKMEKVE 475
V L+ +YA + + M+ + E E
Sbjct: 472 YV--ALLSSYAKSDKNLGNMVDEILREMEE 499
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| TAIR|locus:2184807 AT5G09450 "AT5G09450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 98/331 (29%), Positives = 163/331 (49%)
Query: 22 EEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENM 81
++ L R+F+ S L +++ ++ E+ + K+LR + Y AL+++E M
Sbjct: 54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWM 113
Query: 82 EKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTX 140
+ +K + +D A +DL++KV GIDAAE YF L SK TY SLL+ Y T
Sbjct: 114 VQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTE 173
Query: 141 XXXXXXXXXXXXXX-GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 199
F ++ +N +MTLY G EK+P +I+ +K + PD +TYN+W
Sbjct: 174 RAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLW 233
Query: 200 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK-ELENR 258
+ + AA +I +++EEM+ D W + +L SIY+ + AE L E E
Sbjct: 234 LSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKS 293
Query: 259 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 318
+ R+ Y FL+ L+ GN + +IW+SLR ++ SY+ ++ + L L A
Sbjct: 294 ISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREA 353
Query: 319 EKCFKEW-ESGCATYDIRVTNVMIGAYAKEG 348
E+ +W ES +D ++ A+ G
Sbjct: 354 EEIIHQWKESKTTEFDASACLRILNAFRDVG 384
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O22714 | PPR86_ARATH | No assigned EC number | 0.7055 | 0.9938 | 0.9918 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00013573001 | SubName- Full=Chromosome undetermined scaffold_504, whole genome shotgun sequence; (489 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 490 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 161 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 204
+N+L+ Y K G E+ + EMK I P+ YTY++ + L
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 235
PD TYN + + A ++ EMK+ G + + T+S L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 336 VT-NVMIGAYAKEGRLENAEELKERARRRGADPNAKT 371
VT N +I Y K+G++E A +L ++RG PN T
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 125 TYGSLLNCYCKELMTEKAEALLEKMKELNL 154
TY SL++ YCK E+A L ++MKE +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 24/98 (24%), Positives = 44/98 (44%)
Query: 126 YGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMK 185
Y SL+ +KA L E +K + L + N+L+T + K ++ EMK
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746
Query: 186 ASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 223
+ P++ TY++ + A +D ++ + K DG
Sbjct: 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 197
+KA +L+ ++ + ++ ++SLM + + +K + +++K+ + P T N
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 198 VWMRALAAVNDISGAERVIEEMKRDGR 224
+ AL N + A V+ EMKR G
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGL 750
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 161 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMP 191
+N+L+ AK G P+ A+++EMKAS + P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 125 TYGSLLNCYCKELMTEKAEALLEKMKELNL 154
TY +L++ CK E+A L ++MKE +
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 34/258 (13%)
Query: 148 KMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207
KM E +L FS +N L+ YAK G+ ++ + M + + PD YT+ +R +
Sbjct: 146 KMPERDL-FS---WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201
Query: 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY 267
D++ V + R G D + L ++YV+ G A + + +R RD ++
Sbjct: 202 DLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSA----RLVFDRMPRRDCISW 256
Query: 268 QFLITLYGQTGNLSEVYRIWRSLRLAF--PNTANISYLNMIQVLVNLKDLPGAEKCFKEW 325
+I+ Y + G E ++ ++R P+ L I +++ +L G E+ +E
Sbjct: 257 NAMISGYFENGECLEGLELFFTMRELSVDPD------LMTITSVISACELLGDERLGREM 310
Query: 326 ES-----GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380
G A D+ V N +I Y G AE++ R + +A +W Y
Sbjct: 311 HGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYE 365
Query: 381 RNGDMKLAVDCLEKAIDT 398
+NG +KA++T
Sbjct: 366 KNG-------LPDKALET 376
|
Length = 857 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.7 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.69 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.62 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.49 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.48 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.47 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.42 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.4 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.36 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.26 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.21 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.17 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.13 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.09 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.08 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.05 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.99 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.97 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.93 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.93 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.93 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.87 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.86 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.85 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.82 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.82 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.79 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.78 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.78 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.76 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.74 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.73 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.73 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.66 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.65 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.56 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.56 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.53 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.45 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.45 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.43 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.32 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.16 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.08 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.0 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.96 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.96 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.95 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.94 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.93 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.92 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.91 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.91 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.85 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.82 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.8 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.78 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.78 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.77 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.76 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.73 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.66 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.66 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.65 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.64 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.62 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.62 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.57 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.56 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.55 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.54 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.51 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.5 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.5 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.39 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.39 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.39 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.37 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.36 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.32 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.29 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.27 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.25 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.16 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.14 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.12 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.06 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.94 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.94 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.79 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.72 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.72 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.67 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.61 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.6 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.55 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.48 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.33 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.31 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.17 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.12 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.04 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.03 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.02 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.98 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.96 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.93 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.88 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.77 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.75 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.65 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.59 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.45 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.38 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.37 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.37 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.36 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.33 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.31 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.16 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.16 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.15 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.15 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.14 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.1 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.04 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.0 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.98 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.97 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.9 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.81 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.76 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.58 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.37 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.24 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.23 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.21 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.19 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.07 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.02 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.0 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.96 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.88 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.84 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.81 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.77 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.64 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.63 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.58 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.52 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.49 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.29 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.28 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.25 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.16 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.14 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.0 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.97 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.91 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.71 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.65 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.37 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.23 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.2 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.17 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.13 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.06 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.02 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.92 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.67 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.54 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.51 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.38 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.06 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.0 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.76 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.76 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.61 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.5 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.12 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.84 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.55 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.43 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.25 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.19 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.17 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.16 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.61 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.56 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.11 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 88.04 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.78 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.66 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.5 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.97 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.78 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.56 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.36 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.0 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.89 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.17 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.12 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.5 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.96 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.79 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.45 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.18 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.47 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 80.87 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.65 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.35 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-66 Score=513.76 Aligned_cols=452 Identities=16% Similarity=0.174 Sum_probs=425.8
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHhcC-CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLNQFLKSKK-RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLV 100 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (490)
...++.++.+.| ....+.++++.|.+.|. .++...+..++..|.+.|.+++|+.+++.|.. |+..+|+.++.+|
T Consensus 373 ~~~~y~~l~r~G-~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 373 YIDAYNRLLRDG-RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHCc-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 446777777766 67788999999988885 45666777889999999999999999999864 8999999999999
Q ss_pred HhhCCHHHHHHHHhhcCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHH
Q 011226 101 AKVQGIDAAENYFVDLPE--TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIP 178 (490)
Q Consensus 101 ~~~g~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 178 (490)
++.|+++.|.++|+.|.+ ..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999988 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 179 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR--DGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 179 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .| +.||..+|++++.+|++.|++++|.++|+.|.
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 45 89999999999999999999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 011226 257 NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRV 336 (490)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (490)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 416 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l 416 (490)
|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.| +.||..+|+.+
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G------i~Pd~~Ty~sL 760 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG------LCPNTITYSIL 760 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------CCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 66999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCC---------------------CcHHHHHHHhh
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA----AGR---------------------TSPVMLRRLKM 471 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~---------------------~~~~~~~~m~~ 471 (490)
+.+|++.|+++.|.+++++|.+.|..||..+|+.|+..|.+ +++ .+..++++|..
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876432 111 24567999999
Q ss_pred CCCCCCHHHHHHHH
Q 011226 472 EKVEVSEASKKLLE 485 (490)
Q Consensus 472 ~~~~p~~~~~~~l~ 485 (490)
.|+.||..|+..+.
T Consensus 841 ~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 841 AGTLPTMEVLSQVL 854 (1060)
T ss_pred CCCCCCHHHHHHHH
Confidence 99999999998777
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-65 Score=506.13 Aligned_cols=431 Identities=15% Similarity=0.176 Sum_probs=415.0
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGM-NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGS 128 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 128 (490)
....+...+..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+.
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~ 442 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNM 442 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHH
Confidence 3345678889999999999999999999999998885 56777888999999999999999999999987 99999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 129 LLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 129 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN--RNAHRDLSAYQFLITLYGQTGNLSEVYRI 286 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 286 (490)
+++|.++|+.|.+.| +.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++
T Consensus 523 ~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998 999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 011226 287 WRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD 366 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (490)
|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011226 367 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE 446 (490)
Q Consensus 367 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 446 (490)
||..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++|.++|++|.+.|..||..
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g------~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999998 66999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCC--CcHHHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 447 VFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 447 ~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
+|+.++.+|++.|+ .+..++..|.+.|+.||..++..+.+.|.
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999 67788999999999999999998887763
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=469.58 Aligned_cols=441 Identities=14% Similarity=0.140 Sum_probs=346.2
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHhc-CCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011226 23 EALYDRLFKKGSSDVSVRQQLNQFLKSK-KRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVA 101 (490)
Q Consensus 23 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (490)
..++..+...+ ....+..+++.+...+ ..++..+|..++.++.+.++++.|.+++..|.+.|+.||..+|+.++.+|+
T Consensus 91 ~~~i~~l~~~g-~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 91 CSQIEKLVACG-RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 34455555555 5667777888877654 678999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHH
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAII 181 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 181 (490)
+.|+++.|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++...|..+.+.+++
T Consensus 170 k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred cCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999987 8999999999999999999999999999999999898888888888888888888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 182 QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 182 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 888877888888888888888888888888888887773 356777888888888888888888888888777777
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
||..||+.++.+|++.|++++|.+++..|.+.|..||..+|+.++.+|++.|++++|.++|++|.+ ||..+||.+|
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 888888888888888888888888888887777777777888888888888888888887777743 5777788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCC----------------
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID-TGRGDGG---------------- 404 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~---------------- 404 (490)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+.
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 88888888888888888887777778888888888888888888888888877765 3543321
Q ss_pred ----------CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHHhhC
Q 011226 405 ----------KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKME 472 (490)
Q Consensus 405 ----------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~ 472 (490)
.+.|+..+|++|+.+|...|+++.|..+++++.+.+| .+..+|..|+++|++.|+ .+..+++.|+..
T Consensus 479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 0345555566666666666666666666666555555 455666666666666666 344456666666
Q ss_pred CCCC
Q 011226 473 KVEV 476 (490)
Q Consensus 473 ~~~p 476 (490)
|+.+
T Consensus 558 g~~k 561 (697)
T PLN03081 558 GLSM 561 (697)
T ss_pred CCcc
Confidence 6643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-60 Score=479.03 Aligned_cols=453 Identities=13% Similarity=0.098 Sum_probs=364.6
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVA 101 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (490)
.+.+...+.+.+ ....+..+++.+...|..|+..+|..+++.++..+++..+.+++..+.+.|+.|+..+++.++.+|+
T Consensus 155 ~n~li~~~~~~g-~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 155 WNVLVGGYAKAG-YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 445555555555 4566667777777777777777777777777777777777777777777777788888888899999
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHH
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAII 181 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 181 (490)
+.|+++.|.++|+.|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+.+.|.+++
T Consensus 234 k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 234 KCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred cCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 99999999999999986 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 182 QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 182 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999884 467788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
||..+|+.++.+|++.|+++.|.++++.|.+.|..|+..+|+.|+.+|++.|++++|.++|+.|.+ +|..+|+.+|
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi 462 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSII 462 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988854 4778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC----------------
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK---------------- 405 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------- 405 (490)
.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+.+.|..++..
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 999999999999999999876 488899888888888888888888888888887777432210
Q ss_pred --------CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHHh-hCCC
Q 011226 406 --------WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLK-MEKV 474 (490)
Q Consensus 406 --------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~-~~~~ 474 (490)
..||..+|+++|.+|++.|+.++|.++|++|.+.|..||..+|+.++.+|.+.|+ .+..+++.|+ ..|+
T Consensus 542 ~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 1355555666666666666666666666666666665666666666666666665 3334455665 4466
Q ss_pred CCCHHHHHHHHHh
Q 011226 475 EVSEASKKLLEAI 487 (490)
Q Consensus 475 ~p~~~~~~~l~~~ 487 (490)
.|+..++..+...
T Consensus 622 ~P~~~~y~~lv~~ 634 (857)
T PLN03077 622 TPNLKHYACVVDL 634 (857)
T ss_pred CCchHHHHHHHHH
Confidence 6666555544433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=470.62 Aligned_cols=445 Identities=15% Similarity=0.132 Sum_probs=422.8
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVA 101 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (490)
.+.++..+.+.| ....+..+++.+...|.+++..++..+++.+.+.+.++.|.+++..+.+.+..++...++.++..|+
T Consensus 54 ~n~~i~~l~~~g-~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 54 SNSQLRALCSHG-QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 456777777776 6778888999999999999999999999999999999999999999999998899999999999999
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHH
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAII 181 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 181 (490)
+.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|...+++..+.+++
T Consensus 133 ~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 133 RFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred hCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 99999999999999987 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 182 QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 182 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
..|.+.|+.||..+++.|+.+|++.|+++.|.++|++|. .+|..+|++++.+|++.|++++|+++|++|...|+.
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999985 467889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
||..+|+.++.+|++.|+.+.|.+++..|.+.|..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 46889999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 421 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 421 (490)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.| +.|+..+++.|+.+|+
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g------~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG------LISYVVVANALIEMYS 435 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC------CCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 6699999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 422 QEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 422 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
+.|++++|.++|++|.+ +|..+|+.++.+|++.|+ .+..+++.|.. ++.||..|+..+...|.
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 99999999999999864 788999999999999999 45567899975 69999999999998885
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-59 Score=461.41 Aligned_cols=419 Identities=16% Similarity=0.192 Sum_probs=396.2
Q ss_pred CCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC--CCCCHhHHH
Q 011226 51 KRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRG-MNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE--TSKNHLTYG 127 (490)
Q Consensus 51 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~ 127 (490)
...+...++.++..+.+.|++++|+++|++|...+ ..|+..+|+.++.+|++.++++.+.+++..+.. ..||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 33455689999999999999999999999997654 679999999999999999999999999999987 779999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
.++.+|++.|+++.|.++|++|.+ ||..+||+++.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|+..|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
+.+.+.+++..+.+.| ..+|..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|+++|
T Consensus 239 ~~~~~~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 239 SARAGQQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred cHHHHHHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999964 78999999999999999999999999
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 288 RSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|..||..+|+.|+.+|++.|++++|.++|++|.+ |
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999964 6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHH
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGVE 446 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ 446 (490)
|..+|+.+|.+|++.|+.++|+++|++|.+.| +.||..||+.++.+|.+.|.+++|.++|+.|.+ .+..|+..
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g------~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEG------VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 99999999999999999999999999999999 679999999999999999999999999999986 68889999
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 447 VFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 447 ~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
+|+.++.+|++.|+..++. +.+++.++.|+..++..|...|.
T Consensus 464 ~y~~li~~l~r~G~~~eA~-~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 464 HYACMIELLGREGLLDEAY-AMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred chHhHHHHHHhcCCHHHHH-HHHHHCCCCCCHHHHHHHHHHHH
Confidence 9999999999999955553 33455689999999999998884
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-27 Score=245.74 Aligned_cols=404 Identities=17% Similarity=0.090 Sum_probs=186.5
Q ss_pred ccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhc
Q 011226 37 VSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDL 116 (490)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 116 (490)
..+..+++.+.. ..+.+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+.+
T Consensus 448 ~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 525 (899)
T TIGR02917 448 DKALAAAKKLEK-KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKV 525 (899)
T ss_pred HHHHHHHHHHHH-hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333444444433 223344455555555555555555555555554443 223334444455555555555555555555
Q ss_pred CC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhh
Q 011226 117 PE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYT 195 (490)
Q Consensus 117 ~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 195 (490)
.. .+.+..++..+...+.+.|++++|..+++++...+. .+...+..++..+...|++++|..+++.+.+.. +.+..+
T Consensus 526 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 603 (899)
T TIGR02917 526 LTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEA 603 (899)
T ss_pred HHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 44 223344555555555555555555555555544332 233444445555555555555555555554432 223444
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
|..+..++...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|...++++.+... .+..++..++..+.
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 555555555555555555555555443 233444444455555555555555555555444321 23344444444444
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE 355 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 355 (490)
..|++++|..+++.+....+ .+...+..+...+...|++++|...|+.+....+. ..++..++.++...|++++|.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555544444332 12333444444444444555554444444443322 1333344444444444444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011226 356 LKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 435 (490)
.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. .++...+..+...+...|+ .+|...+++
T Consensus 758 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 758 TLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-------PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 444444432 1233344444444444444444444444444443 0223444444444444444 334444444
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 436 LKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+.+..+ .++.++..+..++...|+
T Consensus 829 ~~~~~~-~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 829 ALKLAP-NIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 444433 334444444444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-26 Score=240.69 Aligned_cols=386 Identities=14% Similarity=0.109 Sum_probs=173.6
Q ss_pred HhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHH
Q 011226 56 WEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYC 134 (490)
Q Consensus 56 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~ 134 (490)
..+..+...+...|++++|.+.++.+...+ +.+..++..+...+.+.|+.++|..+++++.. .+.+...+..++..+.
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 334444444444444445555444444333 22334444444444444444444444444433 2223334444444444
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHH
Q 011226 135 KELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAER 214 (490)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 214 (490)
..|++++|.++++.+..... .+...|..+...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555544444443321 333444444444444444445544444444332 1133334444444444445555555
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 011226 215 VIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (490)
.++++.+. .+.+..++..++..+...|++++|.++++.+...+. .+...+..+...+...|++++|...|+.+...+
T Consensus 657 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 657 SLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 44444443 333444444444444444555555544444444332 233344444444444445555544444444432
Q ss_pred CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011226 295 PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 374 (490)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 374 (490)
+ +..++..+..++...|++++|.+.+..+.+..+. +...+..+...|...|++++|..+|+++.+... ++...++.
T Consensus 734 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~ 809 (899)
T TIGR02917 734 P--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNN 809 (899)
T ss_pred C--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 2 2233334444444444544444444444443332 344444444444444555555555544444321 23344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
+...+...|+ .+|+.+++++.+... .+..++..+...+...|++++|...++++++.+| .+..++..++.+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 880 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAP-------NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALA 880 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCC-------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHH
Confidence 4444444444 444444444444320 1233344444444444455555555555444444 344444444444
Q ss_pred HHhcCC
Q 011226 455 YAAAGR 460 (490)
Q Consensus 455 ~~~~g~ 460 (490)
|.+.|+
T Consensus 881 ~~~~g~ 886 (899)
T TIGR02917 881 LLATGR 886 (899)
T ss_pred HHHcCC
Confidence 444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-23 Score=186.81 Aligned_cols=435 Identities=17% Similarity=0.150 Sum_probs=351.8
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCC--------------
Q 011226 23 EALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-------------- 88 (490)
Q Consensus 23 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-------------- 88 (490)
++.+.+......+......+++.+... +........+.+...+.|++.+|++.....-+++..-
T Consensus 18 ~~~~~~~ld~~~~s~~s~~v~qq~~~t--~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~ 95 (966)
T KOG4626|consen 18 REAFSRKLDQSVSSSGSSSVLQQFNKT--HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG 95 (966)
T ss_pred HHHHHHHhccCcccccchHHHHHhccC--CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc
Confidence 345555555555666667777777443 3344557788888889999999998876664433110
Q ss_pred -------------------ChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 89 -------------------TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSK-NHLTYGSLLNCYCKELMTEKAEALLEK 148 (490)
Q Consensus 89 -------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 148 (490)
-..+|..+.+.+-..|++..|+..++.+.+.+| ....|..+..++...|+.+.|.+.|.+
T Consensus 96 ~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 96 SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 123666677778888888899998888888444 466888888888888999999988888
Q ss_pred HHhCCCCCCcchHH-HHHHHHHhcCCCCcHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 011226 149 MKELNLGFSSMPFN-SLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVA 226 (490)
Q Consensus 149 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 226 (490)
.++.+ |+..... .+-..+...|+.++|...|.+.++. .|. ...|..|...+-..|+...|++.|++..+. .|
T Consensus 176 alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 176 ALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred HHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 88755 5544333 3334444578888998888888774 333 456788888888999999999999999986 45
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHH
Q 011226 227 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI 306 (490)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (490)
.-...|..|...|...+.+++|...+.+...... .....+..+...|...|..+-|+..|++..+..+.. ...|+.|.
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~Nla 327 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLA 327 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHH
Confidence 5577899999999999999999999998876432 346777788888999999999999999998865542 46899999
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCH
Q 011226 307 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDM 385 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 385 (490)
.++-..|++.+|.+.+.......+. .....+.|...|...|.+++|..+|....+- .|.. ..++.+...|-+.|++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccH
Confidence 9999999999999999999887766 6778888999999999999999999999884 4543 5688899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHH
Q 011226 386 KLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV 464 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 464 (490)
++|+..+++.++.. |+ ...|+.+...|...|+.+.|...+.+++..+| .-..+++.|...|-..|...++
T Consensus 405 ~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 405 DDAIMCYKEALRIK--------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HHHHHHHHHHHhcC--------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHH
Confidence 99999999999876 77 78899999999999999999999999999998 7789999999999999999999
Q ss_pred HHHHHhhCCCCCCHH
Q 011226 465 MLRRLKMEKVEVSEA 479 (490)
Q Consensus 465 ~~~~m~~~~~~p~~~ 479 (490)
+-..-....++||..
T Consensus 476 I~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 476 IQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHccCCCCc
Confidence 988888888999864
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=190.16 Aligned_cols=300 Identities=14% Similarity=0.095 Sum_probs=194.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC---HhhHHHHHHHHHHcCCh
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD---SYTYNVWMRALAAVNDI 209 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~ 209 (490)
+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...+...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 4455666666666666666542 2344566666666666666666666666655421111 23456666677777777
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHhcCChhHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL----SAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 285 (490)
+.|..+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|..
T Consensus 124 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777664 4455666777777777777777777777777665433221 234455666667777777777
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
.|+++.+..+. +...+..+...+.+.|++++|.++++++...++.....+++.++.+|...|++++|...++++.+.
T Consensus 202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 77777665432 344556666777777777777777777766544333455667777777777788887777777764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCC
Q 011226 366 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ---EKDVDGAEGFLEILKKAVDD 442 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~ 442 (490)
.|+...+..++..+.+.|++++|..+++++.+.. |+...+..++..+.. .|+.+++..+++++.+.++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--------P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--------PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 3555556667777777777888888777777765 777777766666554 44777777777777765544
Q ss_pred CCHH
Q 011226 443 LGVE 446 (490)
Q Consensus 443 ~~~~ 446 (490)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 4443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-22 Score=178.84 Aligned_cols=389 Identities=16% Similarity=0.118 Sum_probs=333.0
Q ss_pred CCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHH-HH
Q 011226 51 KRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYG-SL 129 (490)
Q Consensus 51 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~l 129 (490)
.+.-.+.|..+...+...|+++.|+..++.+.+.. +.....|..+..++...|+.+.|.+.|....+..|+..... .+
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 34456778888889999999999999999998876 34677899999999999999999999999998777766443 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCC
Q 011226 130 LNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVND 208 (490)
Q Consensus 130 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 208 (490)
-..+...|++++|...+.+..+... --...|+.|...+...|+...|+..|++..+. .|+ ...|-.|...|-..+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 4555567999999999998887643 34678999999999999999999999999874 454 4678889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
++.|+..|.+.... -+.....+..+...|...|++|-|+..+++..... |+ ...|+.|..++-..|++.+|.+.|
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999999886 46667788889999999999999999999998753 43 578999999999999999999999
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 288 RSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
++.....+. .....+.|...+...|.+++|..+|.....-.+. -...++.|...|-.+|++++|+..+++.+. +.|
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 999886543 3456788999999999999999999998876554 456788899999999999999999999998 567
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011226 368 NA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV 445 (490)
Q Consensus 368 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 445 (490)
+. ..|+.+...|-..|+++.|+..+.+.+... |. ...++.|...|...|++.+|+.-+++.++..| .-+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--------Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP-Dfp 490 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--------PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP-DFP 490 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--------cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC-CCc
Confidence 65 578899999999999999999999999987 76 67889999999999999999999999999998 777
Q ss_pred HhHHHHHHHHHhcCC
Q 011226 446 EVFEPLIRTYAAAGR 460 (490)
Q Consensus 446 ~~~~~l~~~~~~~g~ 460 (490)
.+|..++.++.-..+
T Consensus 491 dA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 491 DAYCNLLHCLQIVCD 505 (966)
T ss_pred hhhhHHHHHHHHHhc
Confidence 888888887755444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-20 Score=185.30 Aligned_cols=336 Identities=10% Similarity=-0.066 Sum_probs=274.2
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNC 132 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~ 132 (490)
....+..++..+.+.|++++|+.+++........ +...+..++.+....|+++.|...|+.+.. .+.+...+..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3455677788899999999999999999877633 344556666777789999999999999998 44456788889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA 212 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 212 (490)
+...|++++|...+++...... .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999998642 45678888999999999999999999988765422 23333333 357889999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhH----HHHHHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE----VYRIWR 288 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~ 288 (490)
...++.+.+.. ..++...+..+...+.+.|++++|...+++...... .+...+..+...+...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999988863 234444555667888999999999999999988653 457788889999999999986 899999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 011226 289 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN 368 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 368 (490)
...+..+. +...+..+...+...|++++|...++......+. +...+..+...+...|++++|...|+.+.+. .|+
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~ 350 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGV 350 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc
Confidence 99887654 5667888999999999999999999999987665 6677888899999999999999999999985 344
Q ss_pred HHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 369 AKT-WEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 369 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
... +..+..++...|+.++|+..|++..+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 433 3445667899999999999999999886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-22 Score=186.27 Aligned_cols=296 Identities=14% Similarity=0.105 Sum_probs=152.8
Q ss_pred HHhhCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHhcCCCC
Q 011226 100 VAKVQGIDAAENYFVDLPETSK-NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS---SMPFNSLMTLYAKTGHPE 175 (490)
Q Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 175 (490)
+...|++++|...|.++....| +..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3344555555555555544222 233455555555555555555555555544321111 123445555555555555
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 252 (490)
+|..+|+++.+.. +++..++..++.++...|++++|.+.++.+.+.+...+. ...+..++..+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555431 223445555555555555555555555555554211111 112334555555566666666666
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 011226 253 KELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY 332 (490)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (490)
+++.+... .+...+..+...+.+.|++++|.++++++...++.....++..++.+|...|++++|...++.+.+..+
T Consensus 204 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-- 280 (389)
T PRK11788 204 KKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-- 280 (389)
T ss_pred HHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Confidence 66554321 233445555555666666666666666655443322233455556666666666666666666555432
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCC
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR---NGDMKLAVDCLEKAIDTGRG 401 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 401 (490)
+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+++++.+.++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 3334455666666666666666666666553 4566566555555443 34566666666666655544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-20 Score=181.39 Aligned_cols=398 Identities=11% Similarity=0.014 Sum_probs=223.3
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHH
Q 011226 57 EVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSK-NHLTYGSLLNCYCK 135 (490)
Q Consensus 57 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~ 135 (490)
.+......+.+.|++++|+..|+...... |+...|..+..+|.+.|++++|++.++...+..| +...|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34455667888999999999999998764 6777888899999999999999999999988444 56789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH-----------------------------HHhcCCCCcHHHHHHHHHH
Q 011226 136 ELMTEKAEALLEKMKELNLGFSSMPFNSLMTL-----------------------------YAKTGHPEKIPAIIQEMKA 186 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------------~~~~~~~~~a~~~~~~~~~ 186 (490)
.|++++|+.-|......+...+. ....++.. +...........-+....+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999998877655443211111 01111100 0000000000000000000
Q ss_pred CCCCCCH-hhHHHHHHH---HHHcCChhHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 187 SSIMPDS-YTYNVWMRA---LAAVNDISGAERVIEEMKRDGRV-AADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 187 ~~~~p~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
..++. ..+..+... ....+++++|.+.|+...+.+.. +.....+..+...+...|++++|+..|++......
T Consensus 286 --~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P- 362 (615)
T TIGR00990 286 --LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP- 362 (615)
T ss_pred --cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Confidence 00000 000000000 01224566666666666654311 22334455566666666666666666666655321
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
.....|..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...|+...+..+. +...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHH
Confidence 12445555666666666666666666666554332 3445555666666666666666666666655443 455555566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH-HHHHHHHHHH
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHF 420 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 420 (490)
..+.+.|++++|+..|++..+.. +.+...++.+...+...|++++|++.|++.++..... .....+. ..+...+..+
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHH
Confidence 66666666666666666666532 1234555566666666666666666666666553210 0011111 1122222223
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 421 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 421 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
...|++++|...+++++..+| .+..++..+...+.+.|+..+++
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence 334666666666666666655 55556666666666666655544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-20 Score=192.76 Aligned_cols=395 Identities=13% Similarity=0.020 Sum_probs=268.2
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCH---hHHH------------
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNH---LTYG------------ 127 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~------------ 127 (490)
..+...|++++|+..|+...+.. +.+...+..+..++.+.|++++|+..|++..+..|+. ..|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 44566788888888888887665 3356677777788888888888888888776633332 1121
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHH--------
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW-------- 199 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-------- 199 (490)
.....+.+.|++++|...|++..+... .+...+..+...+...|++++|.+.|++..+.. +.+...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 123456677888888888888877653 345566677777888888888888888877642 1123333222
Q ss_pred ----------------------------------HHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCH
Q 011226 200 ----------------------------------MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF 245 (490)
Q Consensus 200 ----------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 245 (490)
...+...|++++|+..|++..+. .|.+...+..+...|.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 23344567777777777777765 455566666677777777777
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCc---------hhHHHHHHHHHhcCChh
Q 011226 246 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN---------ISYLNMIQVLVNLKDLP 316 (490)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~ 316 (490)
++|...++++.+... .+...+..+...+...++.++|...++.+......++. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 777777777665332 23334444444555667777777776655322111111 11223456677788888
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 317 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
+|..+++. ...+...+..+...+.+.|++++|+..|++..+..+. +...+..+...+...|++++|++.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88887762 2235667778889999999999999999999986433 67788889999999999999999999888
Q ss_pred hcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHHhcCCCcHHHH---HH
Q 011226 397 DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL-----GVEVFEPLIRTYAAAGRTSPVML---RR 468 (490)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~~~~---~~ 468 (490)
+.. ..+...+..+..++...|++++|.+.+++++...+.. +...+..+...+...|+..+++. ..
T Consensus 665 ~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 665 ATA-------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred ccC-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 765 1346677778888999999999999999998865422 23567777888999999666553 34
Q ss_pred HhhCCCCC
Q 011226 469 LKMEKVEV 476 (490)
Q Consensus 469 m~~~~~~p 476 (490)
|...|+.|
T Consensus 738 l~~~~~~~ 745 (1157)
T PRK11447 738 MVASGITP 745 (1157)
T ss_pred HhhcCCCC
Confidence 44445543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-20 Score=180.84 Aligned_cols=346 Identities=10% Similarity=0.032 Sum_probs=280.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 011226 93 QAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKT 171 (490)
Q Consensus 93 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (490)
...++..+.+.|+++.|..+++.... .+.+...+..++.+....|+++.|...|+++....+ .+...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHc
Confidence 44566778889999999999999888 444456677777888889999999999999998763 4567788888999999
Q ss_pred CCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011226 172 GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERA 251 (490)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 251 (490)
|++++|...++++.+.. +.+...+..+..++...|+.++|...++.+... .+.+...+..+ ..+...|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999998853 235677888999999999999999999998876 44455555444 347889999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhh----HHHHHHHHHh
Q 011226 252 LKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG----AEKCFKEWES 327 (490)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 327 (490)
++.+.+....++...+..+..++...|++++|...++.+....+. +...+..+...+...|++++ |...++....
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 999887654344555566678889999999999999999887653 45677788999999999986 8999999988
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCc
Q 011226 328 GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV 407 (490)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 407 (490)
..+. +...+..+...+...|++++|...+++..+.... +...+..+...+.+.|++++|+..++++.+..
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-------- 348 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-------- 348 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------
Confidence 7665 7889999999999999999999999999986433 45667778889999999999999999999887
Q ss_pred CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 408 PSS-ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 408 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
|+. ..+..+..++...|++++|...|+++.+..|..-...|...+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~ 396 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLA 396 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHH
Confidence 654 33444577889999999999999999998764334444433333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-20 Score=179.73 Aligned_cols=298 Identities=12% Similarity=-0.000 Sum_probs=218.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 011226 93 QAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG 172 (490)
Q Consensus 93 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (490)
+......+.+.|+++.|+..|+......|+...|..+..+|.+.|++++|++.++..++.+. .+...|..+..+|...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcC
Confidence 44556778889999999999999998778888999999999999999999999999998753 45668888999999999
Q ss_pred CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCCH----------------------
Q 011226 173 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG-RVAADW---------------------- 229 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~---------------------- 229 (490)
++++|+..|......+-..+.. ...++..+.. ..+........+.. ...+..
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 9999998887665432111111 1111111111 11111111111110 000000
Q ss_pred --------HHHHHHHHHH---HHcCCHHHHHHHHHHHHHcc-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 011226 230 --------TTFSNLASIY---VEAGLFEKAERALKELENRN-AHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN 296 (490)
Q Consensus 230 --------~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (490)
..+..+...+ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..+++.....+.
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 0011111111 22468999999999998764 223 4567888888899999999999999999876543
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011226 297 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 376 (490)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 376 (490)
....|..+...+...|++++|...|+...+..+. +..+|..+...+...|++++|...|++..+... .+...+..+.
T Consensus 364 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la 440 (615)
T TIGR00990 364 -VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLG 440 (615)
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHH
Confidence 3457788889999999999999999999887655 678899999999999999999999999998643 2566777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
..+.+.|++++|+..|++.++..
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 88999999999999999998865
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-19 Score=187.48 Aligned_cols=314 Identities=14% Similarity=0.083 Sum_probs=154.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC-CHhhH------------HHH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMP-DSYTY------------NVW 199 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~------------~~l 199 (490)
+...|++++|+..|++.++... .+...+..+...+.+.|++++|...|++..+..... ....+ ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 3445666666666666655432 244555556666666666666666666655532111 10111 111
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHH----------
Q 011226 200 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQF---------- 269 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------- 269 (490)
...+.+.|++++|+..|+++.+. .+.+...+..+...+...|++++|.+.|+++.+... .+...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCH
Confidence 23445566666666666666654 444555555566666666666666666666554322 12222222
Q ss_pred --------------------------------HHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhh
Q 011226 270 --------------------------------LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 317 (490)
Q Consensus 270 --------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (490)
+...+...|++++|++.|++..+..+. +...+..+...|...|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 233344556666666666666654432 33444556666666666666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---------------------------------
Q 011226 318 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG--------------------------------- 364 (490)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------------------------- 364 (490)
|...++.+.+..+. +...+..+...+...++.++|...++.+....
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 66666666554333 33333333333334444444444443322110
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 365 ------ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 365 ------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
.+.+...+..+...+.+.|++++|++.|+++++... .+...+..++..+...|++++|...++.+.+
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-------GNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 112223333344444444555555555555554430 2244444555555555555555555555444
Q ss_pred cCCCCCHHhHHHHHHHHHhcCC
Q 011226 439 AVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
..+ .+..++..+..++...|+
T Consensus 666 ~~p-~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 666 TAN-DSLNTQRRVALAWAALGD 686 (1157)
T ss_pred cCC-CChHHHHHHHHHHHhCCC
Confidence 443 344444445555555555
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-20 Score=183.39 Aligned_cols=418 Identities=10% Similarity=-0.012 Sum_probs=300.1
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCC-CCCHhHHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET-SKNHLTYGS 128 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 128 (490)
..+.++..+...+......|+.++|++++....... +.+...+..+..++.+.|++++|...|+..... +.+...+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 456788888888888899999999999999887633 345556888888899999999999999998773 455677788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 129 LLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 129 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
+...+...|++++|+..+++..+... .+.. +..+...+...|+.++|+..++++.+... -+...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 88888999999999999999888642 3444 77888888899999999999999988642 244555667778888888
Q ss_pred hhHHHHHHHHHHHCCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-cCCCCHH-HHH----
Q 011226 209 ISGAERVIEEMKRDGRVAADW------TTFSNLASIYV-----EAGLF---EKAERALKELENR-NAHRDLS-AYQ---- 268 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~~---- 268 (490)
.+.|+..++.+... |+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 166 ~e~Al~~l~~~~~~----p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 166 SAPALGAIDDANLT----PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred hHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 89898888765542 111 11112222222 12234 6788888888753 1122221 111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCC-CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---ChhhHHHHHHHH
Q 011226 269 FLITLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY---DIRVTNVMIGAY 344 (490)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 344 (490)
..+.++...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|...|+.+....+.. .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133456778999999999998876542 322 22335778889999999999999887654321 123455666778
Q ss_pred HhcCChhHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH
Q 011226 345 AKEGRLENAEELKERARRRGA-----------DPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS 410 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~ 410 (490)
...|++++|..+++.+.+... .|+. ..+..+...+...|+.++|+++++++.... +.+.
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-------P~n~ 393 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-------PGNQ 393 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCH
Confidence 889999999999998887521 1232 244566677888999999999999998876 1347
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCc--HHHHHHHhhCCCCCCHHHHHHHHH
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS--PVMLRRLKMEKVEVSEASKKLLEA 486 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~~~~~m~~~~~~p~~~~~~~l~~ 486 (490)
..+..+...+...|++++|++.+++++...| .+...+..++..+...|++. +++++.+.+ ..|+......+.+
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~ 468 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 7888888899999999999999999999888 78888888888888888844 444555443 4677666554443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-18 Score=173.24 Aligned_cols=406 Identities=10% Similarity=-0.005 Sum_probs=300.2
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011226 23 EALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAK 102 (490)
Q Consensus 23 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (490)
.+......-.| +...+..++..... ..+.+...+..+...+...|++++|.++++...... +.+...+..+..++..
T Consensus 19 ~d~~~ia~~~g-~~~~A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAG-QDAEVITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34444444444 44445555555543 345666678999999999999999999999998775 3456667788888999
Q ss_pred hCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHH
Q 011226 103 VQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAII 181 (490)
Q Consensus 103 ~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 181 (490)
.|++++|...++++.. .+.+.. +..+...+...|+.++|+..++++.+..+ .+...+..+...+...+..+.|++.+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 9999999999999988 444566 88888999999999999999999999763 34556667788888889999999988
Q ss_pred HHHHHCCCCCCH------hhHHHHHHHHHH-----cCCh---hHHHHHHHHHHHCCCCCCCH-HHHH----HHHHHHHHc
Q 011226 182 QEMKASSIMPDS------YTYNVWMRALAA-----VNDI---SGAERVIEEMKRDGRVAADW-TTFS----NLASIYVEA 242 (490)
Q Consensus 182 ~~~~~~~~~p~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~~~~~~~~-~~~~----~l~~~~~~~ 242 (490)
+.... .|+. .....+++.... .+++ ++|+..++.+.+.....|+. ..+. ..+..+...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 86654 2321 112223333221 2234 77888888888641122222 1111 113345677
Q ss_pred CCHHHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC---CchhHHHHHHHHHhcCChhhH
Q 011226 243 GLFEKAERALKELENRNAH-RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT---ANISYLNMIQVLVNLKDLPGA 318 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 318 (490)
|++++|...|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+.+..+.. .......+..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 9999999999999887532 332 22335778999999999999999987654321 123455667788999999999
Q ss_pred HHHHHHHHhcCC-----------CCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 319 EKCFKEWESGCA-----------TYD---IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 319 ~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
...++.+....+ .|+ ...+..+...+...|+.++|+++++++....+ .+...+..+...+...|+
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 999999887643 122 23456677889999999999999999998633 356778888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
+++|++.+++++... |+ ...+...+..+...|++++|..+++++++..| .++.+
T Consensus 409 ~~~A~~~l~~al~l~--------Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P-d~~~~ 463 (765)
T PRK10049 409 PRAAENELKKAEVLE--------PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP-QDPGV 463 (765)
T ss_pred HHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 999999999999986 55 67777888899999999999999999999887 55443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-17 Score=161.22 Aligned_cols=384 Identities=11% Similarity=0.023 Sum_probs=224.4
Q ss_pred HhccCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHH
Q 011226 65 LRDRKLYYPALKLSENMEKRGMNKTV--SDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEK 141 (490)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~ 141 (490)
..+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++... .+.+......+...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344555555555555554443 221 122 444444455555555555555442 11111112222334444455555
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011226 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 221 (490)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 221 (490)
|+++|+++.+..+ -+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5555555555432 22333444444455555555555555555442 23333332222222223334335555555555
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHH------------------------------------------------HHHHHHH
Q 011226 222 DGRVAADWTTFSNLASIYVEAGLFE------------------------------------------------KAERALK 253 (490)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~~~~~------------------------------------------------~A~~~~~ 253 (490)
. .|.+...+..+.....+.|-.. .|+.-++
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 4 3334444444444444443332 3333344
Q ss_pred HHHHc-cCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 254 ELENR-NAHRDL-SAY----QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 254 ~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
.+... +..|.. ..| .-.+-++...|+..++++.|+.+...+......+-..+.++|...+++++|..+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 43331 111221 111 123446777888899999999988777554556778888999999999999999998865
Q ss_pred cCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHHHHhcCCHHHH
Q 011226 328 GCA-----TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA-------------DPNAK-TWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 328 ~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~~g~~~~A 388 (490)
... .++......|.-+|...+++++|..+++.+.+..+ .||-. .+..++..+...|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 431 22333356788888899999999999999887311 12222 234456677888999999
Q ss_pred HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHH
Q 011226 389 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV 464 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 464 (490)
++.++++.... +-|......+...+...|.+.+|+..++.+....| .+..+...++.++...|++.++
T Consensus 436 e~~le~l~~~a-------P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 436 QKKLEDLSSTA-------PANQNLRIALASIYLARDLPRKAEQELKAVESLAP-RSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhhhHHHH
Confidence 99999998876 14678888888889999999999999988888877 7888888888888888885443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-16 Score=158.22 Aligned_cols=406 Identities=12% Similarity=0.053 Sum_probs=279.9
Q ss_pred CHHhHHHH-HHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-hCCHHHHHHHHhhcCCCCCCHhHHHHHHH
Q 011226 54 FKWEVGDT-LKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAK-VQGIDAAENYFVDLPETSKNHLTYGSLLN 131 (490)
Q Consensus 54 ~~~~~~~l-l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 131 (490)
+...+... .+.|.+.+++++|+++++.+.+.+ +.+......+..+|.. .++ +.+..+++. ..+.+...+..+..
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~--~lk~d~~l~~ala~ 255 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ--GIFTDPQSRITYAT 255 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch--hcccCHHHHHHHHH
Confidence 44445554 788888999999999999998887 3445546666667776 366 777777553 23357778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC-CCcchHH------------------------------HHHHHHH-----------
Q 011226 132 CYCKELMTEKAEALLEKMKELNLG-FSSMPFN------------------------------SLMTLYA----------- 169 (490)
Q Consensus 132 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~------------------------------~l~~~~~----------- 169 (490)
.|.+.|+.++|.++++++...... |...+|. .++..+.
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL 335 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 888899999888888887654221 2222220 0112222
Q ss_pred ----------------------------------------------------hcCCCCcHHHHHHHHHHC--CCCCCHhh
Q 011226 170 ----------------------------------------------------KTGHPEKIPAIIQEMKAS--SIMPDSYT 195 (490)
Q Consensus 170 ----------------------------------------------------~~~~~~~a~~~~~~~~~~--~~~p~~~~ 195 (490)
+.|+.++|.++|...... ...++...
T Consensus 336 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 336 LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 233344444444443321 01112222
Q ss_pred HHHHHHHHHHcCC---hhHH----------------------HHHHHHHHHC-CCCCC--CHHHHHHHHHHHHHcCCHHH
Q 011226 196 YNVWMRALAAVND---ISGA----------------------ERVIEEMKRD-GRVAA--DWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 196 ~~~l~~~~~~~~~---~~~a----------------------~~~~~~~~~~-~~~~~--~~~~~~~l~~~~~~~~~~~~ 247 (490)
.+-++..|.+.+. ...+ ...++..... +..++ +...|..+..++.. ++.++
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 3344555554443 1112 1112222111 11244 66777777777776 78888
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
|...+.+..... |+......+...+...|++++|...|+++... .|+...+..+...+...|+.++|...++...+
T Consensus 495 Ai~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 495 ALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999887776643 55544444455556899999999999987654 23444566777888999999999999999987
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCc
Q 011226 328 GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV 407 (490)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 407 (490)
..+. +...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++.+...
T Consensus 571 l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-------- 639 (987)
T PRK09782 571 RGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-------- 639 (987)
T ss_pred cCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------
Confidence 6543 3333334444455669999999999999985 5678888899999999999999999999999987
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 408 PS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 408 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
|+ ...+..+..++...|++++|...++++++..| .+...+..+..++...|+..+++...-+...+.|+..-
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 54 77888888899999999999999999999998 89999999999999999988777666666677787643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-16 Score=132.28 Aligned_cols=430 Identities=13% Similarity=0.142 Sum_probs=284.0
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHH---HhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011226 23 EALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKK---LRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDL 99 (490)
Q Consensus 23 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (490)
++|+..+.. + ...+.--+.+.+...|.+.++..-..+++. |..++-+-.-++.|-.|...| .-+..+|
T Consensus 120 ~nL~kmIS~-~-EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW------ 190 (625)
T KOG4422|consen 120 NNLLKMISS-R-EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW------ 190 (625)
T ss_pred hHHHHHHhh-c-ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc------
Confidence 344444433 2 244444555666666666665554444332 222222222233333444333 1222222
Q ss_pred HHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHH
Q 011226 100 VAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPA 179 (490)
Q Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 179 (490)
+.|++ |.-+|+..++ +..+|..+|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-. ...+
T Consensus 191 --K~G~v--AdL~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 --KSGAV--ADLLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred --ccccH--HHHHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 22333 3345555554 77899999999999999999999999999888889999999999875433 2388
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCChhH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 011226 180 IIQEMKASSIMPDSYTYNVWMRALAAVNDISG----AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK-AERALKE 254 (490)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~ 254 (490)
++.+|.+..+.||..|||+++++..+.|+++. |.+++.+|.+.| +.|+..+|..+|..+++.++..+ |..++.+
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 99999999999999999999999999998775 456888999999 99999999999999999888754 4555555
Q ss_pred HHHc----cCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHh----CCCCCc---hhHHHHHHHHHhcCChhhHH
Q 011226 255 LENR----NAHR----DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA----FPNTAN---ISYLNMIQVLVNLKDLPGAE 319 (490)
Q Consensus 255 ~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~~~~~~a~ 319 (490)
+... .++| |...|..-+..|.+..+.+-|.++..-+... .+.|+. +-|..+....|.....+...
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 2222 3456677788888999999888876655422 122221 24567778888889999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------H----
Q 011226 320 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-DM--------K---- 386 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~--------~---- 386 (490)
..|+.|.-.-.-|+..+...++++....|.++-..++|..++..|...+...-..++..+++.+ .. .
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 9999999888888999999999999999999999999999998875555554445555555443 11 1
Q ss_pred -HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHhHHHHHHHH---HhcCCC
Q 011226 387 -LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD-DLGVEVFEPLIRTY---AAAGRT 461 (490)
Q Consensus 387 -~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~---~~~g~~ 461 (490)
-|..+++.....-.+ -..........+..+-.+.+.|..++|.+++..+.+.+- -|-....|+++... .+.++.
T Consensus 499 k~aad~~e~~e~~~~R-~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIR-QRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHHHHhhHHH-HHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 111121111110000 000124456667777788999999999999999865432 24455555454444 333442
Q ss_pred --cHHHHHHHhhCCC
Q 011226 462 --SPVMLRRLKMEKV 474 (490)
Q Consensus 462 --~~~~~~~m~~~~~ 474 (490)
+...++.|...+.
T Consensus 578 sqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 578 SQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHHcCc
Confidence 3333455544444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-15 Score=151.58 Aligned_cols=189 Identities=11% Similarity=0.019 Sum_probs=135.0
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011226 278 GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELK 357 (490)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (490)
++.++|...+.+..... |+......+...+...|++++|...|+.+....+ +...+..+...+...|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p--~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM--SNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44445555555544433 3333333334444578888888888887655422 3344556667778888888888888
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 358 ERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 358 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
+...+.+ |+. ..+..+...+...|++++|+..+++.++.. |+...+..+..++.+.|++++|...++++
T Consensus 566 ~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 566 QQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred HHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888753 332 223333334455699999999999998877 78888999999999999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHH
Q 011226 437 KKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASK 481 (490)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~ 481 (490)
+...| .+...++.+..++...|+..+++...-+...+.|+....
T Consensus 636 L~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 636 LELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred HHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99998 889999999999999999777766555566677776543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-15 Score=147.81 Aligned_cols=374 Identities=10% Similarity=-0.024 Sum_probs=266.0
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHc
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKE 136 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~ 136 (490)
+..++..+...|+.++|+..+++..... +........+...+...|++++|.++|+.+.+ .+.+...+..++..+...
T Consensus 71 v~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 71 VDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 3377777777788888888888877221 12222233335567777888888888888887 334456667777778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhH-----
Q 011226 137 LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISG----- 211 (490)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----- 211 (490)
++.++|++.++++.... |+...+..++..+...++..+|++.++++.+.. +-+...+..++.++.+.|-...
T Consensus 150 ~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 88888888888887754 555555444334433455555888888887753 2234444445555544443322
Q ss_pred -------------------------------------------HHHHHHHHHHC-CCCCCCHHH----HHHHHHHHHHcC
Q 011226 212 -------------------------------------------AERVIEEMKRD-GRVAADWTT----FSNLASIYVEAG 243 (490)
Q Consensus 212 -------------------------------------------a~~~~~~~~~~-~~~~~~~~~----~~~l~~~~~~~~ 243 (490)
|+.-++.+... +..|+.... ..-.+-++...|
T Consensus 227 ~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 227 KENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred HhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 33333343332 112322222 223456677889
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCC-----CCCchhHHHHHHHHHhcCChhhH
Q 011226 244 LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP-----NTANISYLNMIQVLVNLKDLPGA 318 (490)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a 318 (490)
++.++++.|+.+...+.+....+-..+.++|...+.+++|..+++.+..... .++......|.-++...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 9999999999999988765667888899999999999999999999876532 12233346789999999999999
Q ss_pred HHHHHHHHhcCC-----------CCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 319 EKCFKEWESGCA-----------TYDI---RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 319 ~~~~~~~~~~~~-----------~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
..+++.+.+..+ .||. ..+..++..+.-.|++.+|++.++.+....+ -|......+...+...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 999999987432 1222 2334567778899999999999999988643 377888889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV 445 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 445 (490)
+.+|+..++...... |+ ..+....+.++...|++++|..+.+.+.+..| .+.
T Consensus 466 p~~A~~~~k~a~~l~--------P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P-e~~ 518 (822)
T PRK14574 466 PRKAEQELKAVESLA--------PRSLILERAQAETAMALQEWHQMELLTDDVISRSP-EDI 518 (822)
T ss_pred HHHHHHHHHHHhhhC--------CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC-Cch
Confidence 999999998877775 54 67778888999999999999999999999887 444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-16 Score=146.39 Aligned_cols=418 Identities=15% Similarity=0.067 Sum_probs=224.2
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHh--HHH
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMN--KTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHL--TYG 127 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 127 (490)
+.++..++.+...|.-.|++..++.+...+...... .-...|-.+..++...|+++.|...|....+..++.. .+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 345555555555555566666666665555443311 1122344555556666666666666555555333332 233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC----CCCcHHHHHHHHHH-----------------
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG----HPEKIPAIIQEMKA----------------- 186 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~----------------- 186 (490)
-|...+.+.|+++.+...|+....... -+..+...|...|...+ ..+.|..++.+..+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 345555556666666655555554321 22233333333333332 12333333333322
Q ss_pred --------------------CCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC--C------CCCHHHHHHHHHH
Q 011226 187 --------------------SSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGR--V------AADWTTFSNLASI 238 (490)
Q Consensus 187 --------------------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~------~~~~~~~~~l~~~ 238 (490)
.+-.+.+...|.+...+...|+++.|...|......-. . .++..+--.+..+
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 22233444445555555555555555555555443300 0 0111112223344
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhh
Q 011226 239 YVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 317 (490)
Q Consensus 239 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (490)
+-..++++.|.+.|..+.+.. |+ +..|-.+.......+...+|...++...... ..++..+..+...+.+..++..
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 444445555555555554422 22 1112222211122244455555555554332 1233344444555555556666
Q ss_pred HHHHHHHHHhcC-CCCChhhHHHHHHHHHh------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 318 AEKCFKEWESGC-ATYDIRVTNVMIGAYAK------------EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 318 a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
|.+-|..+.+.- ..+|+.+...|...|.. .+..+.|+++|...++..+. |...-|-+.-.++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccC
Confidence 665555443321 12344444445554432 24466788888888776443 66666777777888888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHHhcCCCcH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGVEVFEPLIRTYAAAGRTSP 463 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 463 (490)
+.+|..+|.+..+... ....+|..+.++|...|++..|+++|+...+ .....++.+...|.+++.+.|++.+
T Consensus 662 ~~~A~dIFsqVrEa~~-------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATS-------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred chHHHHHHHHHHHHHh-------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 8888888888888751 3566788888888888888888888888766 3445678888888888888888777
Q ss_pred HHHHHHhhCCCCCCHHHH
Q 011226 464 VMLRRLKMEKVEVSEASK 481 (490)
Q Consensus 464 ~~~~~m~~~~~~p~~~~~ 481 (490)
+......+..+.|...+.
T Consensus 735 ak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 735 AKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHhCCccchH
Confidence 777777777777776653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-16 Score=134.01 Aligned_cols=348 Identities=18% Similarity=0.178 Sum_probs=234.5
Q ss_pred HHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchH--------HHHHH---
Q 011226 98 DLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPF--------NSLMT--- 166 (490)
Q Consensus 98 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~--- 166 (490)
..+.+.|.++.|+..|+...+..||..+--.|+-++..-|+-++..+.|.+|......||..-| ..|+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 3455778888888888888877778766555555666678888888888888765433433322 11221
Q ss_pred ------HHHhcCCCCcHHHHHH---HHHHCCCCCCHhh-------------HH--------HHHHHHHHcCChhHHHHHH
Q 011226 167 ------LYAKTGHPEKIPAIIQ---EMKASSIMPDSYT-------------YN--------VWMRALAAVNDISGAERVI 216 (490)
Q Consensus 167 ------~~~~~~~~~~a~~~~~---~~~~~~~~p~~~~-------------~~--------~l~~~~~~~~~~~~a~~~~ 216 (490)
.+-+.+. ..|.+..- +++.--+.|+-.. +. .-..-+.+.|+++.|++++
T Consensus 364 ~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 364 KNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1111111 11111111 1111111111100 00 1123567788888888777
Q ss_pred HHHHHCCCCCCCHHHHHHH------------------------------------HHHHHHcCCHHHHHHHHHHHHHccC
Q 011226 217 EEMKRDGRVAADWTTFSNL------------------------------------ASIYVEAGLFEKAERALKELENRNA 260 (490)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~ 260 (490)
.-+.+.. ...-...-+.| .+.....|++++|.+.+++......
T Consensus 443 kv~~~kd-nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKKD-NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhcc-chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 7766543 11111111111 1111235788999999998876322
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 011226 261 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 340 (490)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (490)
.-....||. .-.+-..|+.++|++.|-++...- .-+..+...+...|....+...|++++.+....-+. |+.+...|
T Consensus 522 sc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~slip~-dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN-DPAILSKL 598 (840)
T ss_pred HHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-CHHHHHHH
Confidence 212222322 224667899999999998876542 235566777888999999999999999888776444 88999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHH
Q 011226 341 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 420 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 420 (490)
...|-+.|+-..|.+.+-+--.. ++-+..+...+...|....-+++++.+|++..-.. |+..-|..++..|
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliq--------p~~~kwqlmiasc 669 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--------PNQSKWQLMIASC 669 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHH
Confidence 99999999999999887665443 45577888888888889999999999999987655 9999999888765
Q ss_pred -HhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 421 -EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 421 -~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
.+.|++++|..+++...+.-| .|......|++.+...|-
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfp-edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCc-cchHHHHHHHHHhccccc
Confidence 578999999999999998888 899999999999988887
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-14 Score=124.51 Aligned_cols=346 Identities=15% Similarity=0.135 Sum_probs=242.1
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC--CCCCHhHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE--TSKNHLTYG 127 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~ 127 (490)
-.+.+..++..+|.++++....+.|.+++++......+.+..++|.+|.+-.-..+ .++..+|.. ..||..++|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 45667888999999999999999999999998666667888899998877654433 566667766 679999999
Q ss_pred HHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCc-HHHHHHHHHHC----CCCC----CHh
Q 011226 128 SLLNCYCKELMTEK----AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEK-IPAIIQEMKAS----SIMP----DSY 194 (490)
Q Consensus 128 ~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~p----~~~ 194 (490)
+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ |..++.++... .++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998865 46788889999999999999999998888877644 55555555432 2222 345
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDG---RVAADW---TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ 268 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (490)
.|...+..|.+..|.+.|.++..-+.... .+.|+. .-|..+....|+....+.-...|+.|..+-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 67778888888899998888877665421 122332 235667777888888999999999998877778888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC-Ch--h-----------hHHHHHHHH-----HhcC
Q 011226 269 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK-DL--P-----------GAEKCFKEW-----ESGC 329 (490)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--~-----------~a~~~~~~~-----~~~~ 329 (490)
.++++..-.+.++-.-++|..++..|.......-..++..+++.. +. . -|..+++.. ....
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 899988889999988899988887765444444344444444433 11 0 011111111 0112
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 330 ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG-ADPNAKTWE---IFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 330 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
........+.+.-.+.+.|+.++|.++|..+.+++ -.|-....| .++..-.+.+....|+.+++-+...+
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 33345566666777778888888888888775433 223333444 44455566677777777777776665
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-14 Score=136.48 Aligned_cols=392 Identities=14% Similarity=0.102 Sum_probs=281.2
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCH-hHHHHHHH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNH-LTYGSLLN 131 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~ 131 (490)
.-+..+..+.+.|...|++++|...|....+..-......+--+...+.+.|+++.+...|+.+....||. .+...|..
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 44566777888888888888888888777666521112333456677777777777777777766633432 33333333
Q ss_pred HHHHcC----CHHHH---------------------------------HHHHHHH----HhCCCCCCcchHHHHHHHHHh
Q 011226 132 CYCKEL----MTEKA---------------------------------EALLEKM----KELNLGFSSMPFNSLMTLYAK 170 (490)
Q Consensus 132 ~~~~~~----~~~~a---------------------------------~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 170 (490)
.|...+ ..+.| +..|... ...+-.+.....|.+......
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 333332 22333 3333322 222333455666788888888
Q ss_pred cCCCCcHHHHHHHHHHC---CCCCCH------hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKAS---SIMPDS------YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE 241 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (490)
.|++++|...|...... ...+|. .+--.+.++.-..++.+.|.+.|..+.+. .|.-+..|.-++.....
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHh
Confidence 99999999999988654 122232 22333666777788999999999999996 45555556666544455
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCCCchhHHHHHHHHHh---------
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTANISYLNMIQVLVN--------- 311 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--------- 311 (490)
.+...+|...++...... ..++..++.+...+.....+..|.+-|..+.+. ...+|..+...|.+.|..
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 688899999999988743 346667777888899999999998877766543 223566666666665542
Q ss_pred ---cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011226 312 ---LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 312 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 388 (490)
.+..++|.++|.++.+..+. |...-|-+.-.++..|++.+|..+|.+..+... -...+|..+..+|...|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 34578899999999998777 888889999999999999999999999998643 2556888999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 389 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
+++|+...+... ...++.+...|.+++.+.|.+.+|.+.+..++...|......||..+-.
T Consensus 700 IqmYe~~lkkf~-----~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 700 IQMYENCLKKFY-----KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHHHhc-----ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 999999988852 2356899999999999999999999999999999985556666654433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-14 Score=130.95 Aligned_cols=376 Identities=14% Similarity=0.103 Sum_probs=286.3
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHc
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKE 136 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~ 136 (490)
+......+.-+|++++|.+++.++++.. +.....|..|..+|-..|+.+++...+-.+.. .+.|...|..+.....+.
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 3334445555699999999999999887 45778899999999999999999998877766 556778999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhH----HHHHHHHHHcCChhHH
Q 011226 137 LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTY----NVWMRALAAVNDISGA 212 (490)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~a 212 (490)
|+++.|.-.|.+.++..+ ++...+---+..|-+.|+...|.+-|.++.....+.|..-+ -..++.+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999764 55555556677888999999999999999886432222222 2345677788888999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC---------------------------CHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR---------------------------DLS 265 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------~~~ 265 (490)
.+.++.....+....+...++.++..|.+...++.|......+......+ +..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99999988865567778888999999999999999999888876622211 222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLRLAF--PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA 343 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (490)
.+. +.-++.+....+....+........ +.-+...|.-+..++...|++..|..+|..+......-+...|-.+..+
T Consensus 380 v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 211 2223444444444444555555554 3335567889999999999999999999999987776688899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCCCcCCHHHHHHHHHHH
Q 011226 344 YAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR--GDGGKWVPSSETIRTFMRHF 420 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~p~~~~~~~l~~~~ 420 (490)
|...|..++|.+.|+..+.. .|+ ...-..|...+.+.|+.++|.+.++.+..-+. .+...+.|+..........+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999999999999999985 343 34445666778899999999999998763321 12233667777777777888
Q ss_pred HhcCChHHHHHHHHHHHH
Q 011226 421 EQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 421 ~~~g~~~~a~~~~~~~~~ 438 (490)
.+.|+.++-..+...|+.
T Consensus 537 ~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVD 554 (895)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 899998886665555543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-14 Score=130.54 Aligned_cols=284 Identities=11% Similarity=0.093 Sum_probs=208.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHH-HHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHH--HHHHHHHHcCChhHH
Q 011226 136 ELMTEKAEALLEKMKELNLGFSSMPFN-SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN--VWMRALAAVNDISGA 212 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a 212 (490)
.|+++.|.+.+....+.. +++..+. ....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 589999998887765542 2223333 3344447889999999999988764 45543332 335678889999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH-------HHHHHHHHHHHhcCChhHHHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-------SAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 285 (490)
...++.+.+. .|-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999887 5777888888999999999999999999999887654322 133333444444555666667
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
+|+.+.+.. +.+......+...+...|+.++|.+++....+... +... .++.+....++.+++.+..+...+...
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 777664432 23566777888899999999999999988877433 4322 233444456889999999998887633
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 366 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
-|...+..+...|.+.+++++|.+.|+...+.. |+...+..+...+.+.|+.++|...+++.+..
T Consensus 326 -~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 -DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 255567788888999999999999999999887 99888889999999999999999999987664
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-12 Score=117.12 Aligned_cols=423 Identities=13% Similarity=0.111 Sum_probs=249.0
Q ss_pred CccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhhCCHHHHHH
Q 011226 36 DVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENM----EKRGMNKTVSDQAIHLDLVAKVQGIDAAEN 111 (490)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 111 (490)
...+..+++...+ ..+-+...|....+.=-.+|+.+....++++- ...|+..+...|..=...|-+.|..-.++.
T Consensus 422 YenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 422 YENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence 4556666666543 33444444554444445566666666665543 344555666666555566666666666655
Q ss_pred HHhhcCC----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 011226 112 YFVDLPE----TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187 (490)
Q Consensus 112 ~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 187 (490)
+...... ...-..+|+.-...|.+.+.++-|..+|...++... .+...|...+..--..|..++...+|++....
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 5555444 111233566666666666666666666666655432 34445555555444555566666666666554
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH
Q 011226 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY 267 (490)
Q Consensus 188 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 267 (490)
++-....|....+.+-..||+..|..++.++.+. .+.+...|..-+.....+.++++|..+|.+.... .|+...|
T Consensus 580 -~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~ 654 (913)
T KOG0495|consen 580 -CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVW 654 (913)
T ss_pred -CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhh
Confidence 2223344444455555566666666666666665 4445555666666666666666666666665542 3444555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 268 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
..-+...--.++.++|.+++++..+..+. -...|..+.+.+-+.++.+.|...|..-.+..+. .+-.|-.|.+.--+.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKD 732 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHHHHHHHHHHHh
Confidence 54444444556666666666665554322 1234555556666666666666666555444332 444555555555556
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------C---------
Q 011226 348 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG--------------G--------- 404 (490)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~--------- 404 (490)
|.+-.|..++++..-+++. +...|-..|+.-.+.|+.+.|..+..++++.....+ .
T Consensus 733 ~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred cchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 6666666666666554433 555566666666666666666655555554431111 0
Q ss_pred CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHH
Q 011226 405 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRL 469 (490)
Q Consensus 405 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m 469 (490)
+..-|+.+...+...+....+++.|.+.|++..+.++ .+..+|..+...+.++|. ....++...
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1345778888888899999999999999999999999 889999999999999996 334444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-12 Score=111.53 Aligned_cols=401 Identities=11% Similarity=0.039 Sum_probs=243.0
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHH
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLL 130 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li 130 (490)
..+...+......=..++++..|..+|+.....+ ..+...|...+.+-.++..+..|..+|+.....-|- ...|-..+
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445555555556666888999999999998776 356777888888888999999999999998883333 34666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChh
Q 011226 131 NCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDIS 210 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 210 (490)
.+--..|++..|.++|++-.+- .|+...|++.|+.-.+.+.++.|..+|+...- +.|++.+|--..+.-.+.|+..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 6666779999999999998874 49999999999999999999999999998876 4589999988888888999999
Q ss_pred HHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCChhHHHHH--
Q 011226 211 GAERVIEEMKRD-GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRI-- 286 (490)
Q Consensus 211 ~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~-- 286 (490)
.+..+|+...+. |....+...+.+...--.++..++.|.-+|+-..+.-++.. ...|..+...--+-|+.....++
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999888774 21122233445555555566777788777777666422111 22333333222233433322221
Q ss_pred ------HHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh-hHHHHH--------HHHHhcCChh
Q 011226 287 ------WRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIR-VTNVMI--------GAYAKEGRLE 351 (490)
Q Consensus 287 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li--------~~~~~~~~~~ 351 (490)
++.+...++ .|-.+|--.+..-...|+.+...++|+.....-++.+.. .|...| -.-....+++
T Consensus 305 ~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 222222222 133344445555555566666666666655443222111 111111 1112345555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSD----YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVD 427 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 427 (490)
.+.++|+..++. ++....||.-+-- -..++.++..|.+++..++-.. |...+|...|..-.+.++++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--------PK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--------PKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--------CchhHHHHHHHHHHHHhhHH
Confidence 566666555552 2222233332222 2234455555555555555443 55555555555555555666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHH
Q 011226 428 GAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRR 468 (490)
Q Consensus 428 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~ 468 (490)
.+..++++.++.+| .|-.+|......-...|+ .+.+++..
T Consensus 455 RcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred HHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 66666666665555 555555555555555555 33444444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-14 Score=122.95 Aligned_cols=421 Identities=14% Similarity=0.086 Sum_probs=284.2
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhhCCHHHHHHHHhhcCCCCCCH------hH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQA-IHLDLVAKVQGIDAAENYFVDLPETSKNH------LT 125 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~ 125 (490)
++-..+..+...|.-+..+.+|+..|+-+.+...-|+..... .+.+.+.+...+.+|+++++......|++ .+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 445666777888888888999999999998877777765432 34577888899999999998776633432 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC------------CH
Q 011226 126 YGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMP------------DS 193 (490)
Q Consensus 126 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p------------~~ 193 (490)
.+.+--.+.+.|+++.|+..|+...+.. |+..+-..|+-++.--|+-++..+.|.+|+.....| +.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 5555556788999999999999998865 787776667777777889899999999997653222 32
Q ss_pred hhHHHHHH-----HHHHcC--ChhHHHHHHHHHHHCCCCCCCH---------------------HHHHHHHHHHHHcCCH
Q 011226 194 YTYNVWMR-----ALAAVN--DISGAERVIEEMKRDGRVAADW---------------------TTFSNLASIYVEAGLF 245 (490)
Q Consensus 194 ~~~~~l~~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~ 245 (490)
...+..++ -.-+.+ +.++++-.--+++.-- +.|+. ..-..-...+.+.|++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22332222 121111 1222222111111110 11211 1111335668899999
Q ss_pred HHHHHHHHHHHHccCCCCH---------------------HHH----------HHHH-----HHHHhcCChhHHHHHHHH
Q 011226 246 EKAERALKELENRNAHRDL---------------------SAY----------QFLI-----TLYGQTGNLSEVYRIWRS 289 (490)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~---------------------~~~----------~~l~-----~~~~~~~~~~~a~~~~~~ 289 (490)
+.|.++++-+.+..-+.-. ..| |.-. ......|++++|.+.|++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 9999999887654322111 111 1000 011234788889998888
Q ss_pred HHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 011226 290 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 369 (490)
.......-....|+ +.-.+-..|++++|.+.|-.+...-.. +..+...+...|-...+...|++++.+.... ++.|+
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 87654332223333 344567789999999998887654222 6777777888888889999999998777664 45567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
.....+...|-+.|+-..|.+++-+-.+. +..+..+...|...|....-+++++..|+++.-.. |+..-|.
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-------fp~nie~iewl~ayyidtqf~ekai~y~ekaaliq--p~~~kwq 663 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--PNQSKWQ 663 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--ccHHHHH
Confidence 78888999999999999999887766555 44678898889989999999999999999976554 7888998
Q ss_pred HHHHHH-HhcCCCcHHH--HHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 450 PLIRTY-AAAGRTSPVM--LRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 450 ~l~~~~-~~~g~~~~~~--~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
.++-.| .+.|++..++ ++. .-..+.-|-++.++|.++|-
T Consensus 664 lmiasc~rrsgnyqka~d~yk~-~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKD-IHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHH-HHHhCccchHHHHHHHHHhc
Confidence 887665 4557755554 322 22356677788899999884
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-12 Score=114.96 Aligned_cols=404 Identities=12% Similarity=0.061 Sum_probs=254.5
Q ss_pred HHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CC
Q 011226 44 NQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK--TVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TS 120 (490)
Q Consensus 44 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~ 120 (490)
..+...|...+...|..-...+-..|..--+..+....+..|+.- -..++..-.+.|.+.+.++-|..+|....+ .+
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 445556666777777776666666666666666666665555432 234556666666677777777777766666 33
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHH
Q 011226 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 200 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 200 (490)
.+...|...+..--..|..+.-..+|++....- +.....|.....-+...|+...|..++....+... -+...|..-+
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaav 625 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAV 625 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 445566666665556666666666666666542 23344455555556666777777776666665432 2455666666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCC
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGN 279 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 279 (490)
+....+.+++.|..+|.+... ..++...|..-++..--.++.++|.+++++..+. + |+ .-.|-.+.+.+-+.++
T Consensus 626 Kle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f-p~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-F-PDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C-CchHHHHHHHhHHHHHHHH
Confidence 666666677777777766655 3355666655555555566666777766666553 2 23 3345555566666666
Q ss_pred hhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011226 280 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 359 (490)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (490)
.+.|...|..-.+.-+ -..-.|..+...=-+.|.+-.|..+++...-.++. +...|-..|+.-.+.|..+.|..++.+
T Consensus 701 ie~aR~aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666655443221 12234444444445566666666666666665555 666666666666666666666666555
Q ss_pred HHHc-----------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-
Q 011226 360 ARRR-----------------------------GADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS- 409 (490)
Q Consensus 360 ~~~~-----------------------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~- 409 (490)
.++. .+.-|....-.+...+-...++++|.+.|.+.++.+ ||
T Consensus 779 ALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--------~d~ 850 (913)
T KOG0495|consen 779 ALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--------PDN 850 (913)
T ss_pred HHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--------Ccc
Confidence 5432 123344445555666777788999999999999998 55
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 410 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
..+|..+...+.++|.-+.-.+++.+.....| .....|.+..+--....+..+.+
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~EP-~hG~~W~avSK~i~n~~~t~~ei 905 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETAEP-THGELWQAVSKDIKNWRKTPEEI 905 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhccCC-CCCcHHHHHhhhHHhccCCHHHH
Confidence 78899999999999999999999999999888 66667766665554444433333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=139.13 Aligned_cols=259 Identities=16% Similarity=0.108 Sum_probs=72.9
Q ss_pred HHHHHHhhCCHHHHHHHHhhcC-CC-CC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLP-ET-SK-NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG 172 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~-~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (490)
+...+.+.|++++|.++++... .. +| |...|..+.......++++.|.+.++++...+. -+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 3445555566666666663322 22 22 233344444444455666666666666655443 134444444444 4555
Q ss_pred CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011226 173 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 252 (490)
++++|.+++....+.. ++...+..++..+...++++++..+++.+......+.+...|..+...+.+.|++++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666555443321 34444555555556666666666666665543323445555555666666666666666666
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 011226 253 KELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY 332 (490)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (490)
++..+..+ -|......++..+...|+.+++.++++...+.. ..+...+..+..++...|+.++|...|+...+..+.
T Consensus 170 ~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 170 RKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 66555432 134455555555566666666555555554443 223344455555566666666666666665554433
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
|+.....+..++...|+.++|..+.+++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55555555566666666666665555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-13 Score=127.54 Aligned_cols=285 Identities=9% Similarity=-0.004 Sum_probs=200.3
Q ss_pred hCCHHHHHHHHhhcCCCCCCHhHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHH--HHHHHHHhcCCCCcHHH
Q 011226 103 VQGIDAAENYFVDLPETSKNHLTYGSL-LNCYCKELMTEKAEALLEKMKELNLGFSSMPFN--SLMTLYAKTGHPEKIPA 179 (490)
Q Consensus 103 ~g~~~~a~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 179 (490)
.|+++.|.+.+.......+++..+..+ .....+.|+++.|.+.+.++.+.. |+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 488888888777765533333433333 344477888888888888887754 4543332 33567777888888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 180 IIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW------TTFSNLASIYVEAGLFEKAERALK 253 (490)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~ 253 (490)
.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+...+.. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887764 2256667777888888888888888888888875222211 122333333344455566666666
Q ss_pred HHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 011226 254 ELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYD 333 (490)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 333 (490)
.+.+. .+.+......+...+...|+.++|.+++++..+.. ++... .++.+....++.+++.+..+...+..+. |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-C
Confidence 65442 23467777888888888999999999888887632 33321 2344444568888888888888887665 7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
...+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++....
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 778888888899999999999999988874 688888888888899999999999988887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-13 Score=126.99 Aligned_cols=286 Identities=12% Similarity=0.082 Sum_probs=203.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCcch-HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHh--hHHHHHHHHHHcCChhH
Q 011226 135 KELMTEKAEALLEKMKELNLGFSSMP-FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY--TYNVWMRALAAVNDISG 211 (490)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~ 211 (490)
..|+++.|.+.+.+..+.. |+... +-....++.+.|+++.|.+.+.+..+.. |+.. ........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4699999999998877654 44333 3344566778899999999998887643 4432 33345778888999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHH-HHHHHH---HhcCChhHHHHHH
Q 011226 212 AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ-FLITLY---GQTGNLSEVYRIW 287 (490)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~ 287 (490)
|...++.+.+. .|-+..++..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..++..+.+
T Consensus 172 Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 172 ARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999887 5667778888999999999999999999999887653 333232 111111 2233333334455
Q ss_pred HHHHHhCCC---CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHH
Q 011226 288 RSLRLAFPN---TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA--YAKEGRLENAEELKERARR 362 (490)
Q Consensus 288 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~ 362 (490)
..+....+. .+...+..+...+...|+.++|.+++++..+..+......+. ++.. ....++.+.+.+.++...+
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHH
Confidence 555444332 266777888889999999999999999988865543221111 2222 2345777888888888887
Q ss_pred cCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 363 RGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEK--AIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 363 ~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
. .|+. ....++...+.+.|++++|.+.|+. ..+.. |+...+..+...+.+.|+.++|.+++++..
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~--------p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ--------LDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 3443 4456778889999999999999994 55554 888888899999999999999999999875
Q ss_pred H
Q 011226 438 K 438 (490)
Q Consensus 438 ~ 438 (490)
.
T Consensus 398 ~ 398 (409)
T TIGR00540 398 G 398 (409)
T ss_pred H
Confidence 5
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=140.86 Aligned_cols=261 Identities=17% Similarity=0.133 Sum_probs=115.6
Q ss_pred HHHHHHhccCCchHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHHcC
Q 011226 60 DTLKKLRDRKLYYPALKLSENMEKRG-MNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET-SKNHLTYGSLLNCYCKEL 137 (490)
Q Consensus 60 ~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~ 137 (490)
.+...+.+.|++++|+++++...... .+.+...+..+.......++++.|...++.+... +-++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 56788889999999999997654443 2334444555666777889999999999999983 3346677777777 7899
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC-CCCCHhhHHHHHHHHHHcCChhHHHHHH
Q 011226 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS-IMPDSYTYNVWMRALAAVNDISGAERVI 216 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 216 (490)
++++|.++++...+.. ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998876654 567778889999999999999999999987542 3457788888999999999999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 011226 217 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN 296 (490)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (490)
++..+. .|.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+..|++.....+.
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999997 66778889999999999999999999998887754 356667888999999999999999999999887653
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 297 TANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
|......+..++...|+.++|.++.+++..
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --HHHHHHHHHHHT-----------------
T ss_pred -cccccccccccccccccccccccccccccc
Confidence 777788999999999999999999887643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-12 Score=112.91 Aligned_cols=378 Identities=14% Similarity=0.078 Sum_probs=263.2
Q ss_pred CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchH---HH
Q 011226 87 NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPF---NS 163 (490)
Q Consensus 87 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ 163 (490)
..|...+-.....+.+.|..+.|...|...... -+..|.+.+....-.-+.+.+. ..... . |....| -.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit~~e~~~----~l~~~-l-~~~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELITDIEILS----ILVVG-L-PSDMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhchHHHHH----HHHhc-C-cccchHHHHHH
Confidence 445544444555566778888888888776652 2334444443332223333222 22221 1 211112 12
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHH
Q 011226 164 LMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA---DWTTFSNLASIYV 240 (490)
Q Consensus 164 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 240 (490)
+..++....+.+++..-.......|++-+...-+....+.....|+++|+.+|+++.+. .|- |..+|+.++-.-.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHHHh
Confidence 33455566677888888888888887766665566666777888999999999999986 343 4556665554322
Q ss_pred HcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHH
Q 011226 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 320 (490)
Q Consensus 241 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 320 (490)
.... +..+..-.-.--+--+.|...+.+-|.-.++.++|...|+...+.++. ....|+.+..-|....+...|.+
T Consensus 311 ~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 2111 111111111111223457777888888899999999999999887765 46678889999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011226 321 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 400 (490)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 400 (490)
-++...+.++. |-..|-.|.++|...+...=|+-.|++..+.. +-|...|..|..+|.+.++.++|+..|......|-
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99999998776 88999999999999999999999999999863 33788999999999999999999999999998872
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCC-CHHhHHHHHHHHHhcCCCcHHHHHHHhhCCC
Q 011226 401 GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA----V-DDL-GVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 474 (490)
Q Consensus 401 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~ 474 (490)
.+...+..|...|.+.++.++|...|++.++. | ..+ ...+.--|...+.+.+++.++-...++....
T Consensus 464 -------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 -------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred -------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 46788999999999999999999999888762 2 212 3445555788888888888877766666655
Q ss_pred CCCHHHHHHHHHhh
Q 011226 475 EVSEASKKLLEAIC 488 (490)
Q Consensus 475 ~p~~~~~~~l~~~c 488 (490)
.+.-.--+.|.+-|
T Consensus 537 ~~e~eeak~LlRei 550 (559)
T KOG1155|consen 537 ETECEEAKALLREI 550 (559)
T ss_pred CchHHHHHHHHHHH
Confidence 66555545444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-13 Score=126.50 Aligned_cols=291 Identities=10% Similarity=0.038 Sum_probs=194.4
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHhcCCCCcHH
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLT-YGSLLNCYCKELMTEKAEALLEKMKELNLGFSSM--PFNSLMTLYAKTGHPEKIP 178 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 178 (490)
..|+++.|.+.+....+..|+... +-.........|+++.|.+.+++..+.. |+.. ..-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 458888888888777665555433 3444566777788888888888876644 4432 3334567777788888888
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHH-HHHH---HHHHcCCHHHHHHHHHH
Q 011226 179 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS-NLAS---IYVEAGLFEKAERALKE 254 (490)
Q Consensus 179 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~A~~~~~~ 254 (490)
..++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+ . .+...+. .-.. .....+..+++.+.+..
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-L-FDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888887764 2255667777888888888888888888888874 2 2333221 1111 11223333333445555
Q ss_pred HHHccCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 011226 255 LENRNAH---RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGCA 330 (490)
Q Consensus 255 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 330 (490)
+...... .+...+..+...+...|+.++|.+++++..+..+......+ ....-.....++.+.+.+.++...+..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 5443221 36777788888888888888888888888876543222111 1112222345677788888888776655
Q ss_pred CCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 331 TYDI--RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 331 ~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++....
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 55 6667888888899999999999985444334688888888888899999999999999886554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-13 Score=112.18 Aligned_cols=277 Identities=16% Similarity=0.202 Sum_probs=184.1
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHcCCHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW--TTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A 248 (490)
+++.++|.+.|-+|.+.. +-+..+..+|.+.|.+.|..+.|+++.+.+.++...+.+. .....|..-|...|-+|+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456778888888777642 1233444567777778888888888888777753222211 2234566777778888888
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch----hHHHHHHHHHhcCChhhHHHHHHH
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI----SYLNMIQVLVNLKDLPGAEKCFKE 324 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 324 (490)
..+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+... .|..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888887776432 234566677778888888888888877777665544322 345555556667777888888887
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 011226 325 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG 404 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 404 (490)
..+.+++ .+..-..+.+.+...|+++.|.+.++...+.+..--..+...+..+|.+.|+.++...++..+.+..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~----- 279 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN----- 279 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-----
Confidence 7776555 4555556677777788888888888888777554445566777778888888888888888877775
Q ss_pred CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 405 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 405 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+....-..+........-.+.|...+.+-+... |+...+..|+..-....+
T Consensus 280 ---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 280 ---TGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAE 330 (389)
T ss_pred ---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhcccc
Confidence 454455555555555555666666665555544 577777777776654443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.6e-13 Score=124.24 Aligned_cols=349 Identities=15% Similarity=0.142 Sum_probs=269.0
Q ss_pred HHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHH
Q 011226 100 VAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIP 178 (490)
Q Consensus 100 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 178 (490)
+.-.|++++|.+++.+++. .+.+...|.+|...|-..|+.+++...+-..-.... .|...|..+.....+.|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHH
Confidence 3344999999999999988 666788999999999999999999998877666544 56688999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-CHHHHH----HHHHHHHHcCCHHHHHHHHH
Q 011226 179 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-DWTTFS----NLASIYVEAGLFEKAERALK 253 (490)
Q Consensus 179 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~----~l~~~~~~~~~~~~A~~~~~ 253 (490)
-+|.+.++.. +++...+---...|-+.|+...|..-|.++... .+| |..-+. ..++.+...++-+.|.+.++
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999874 345445555667889999999999999999997 343 333222 34666777888899999998
Q ss_pred HHHHc-cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCC----------------------CCCchhHH----HHH
Q 011226 254 ELENR-NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP----------------------NTANISYL----NMI 306 (490)
Q Consensus 254 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------~~~~~~~~----~l~ 306 (490)
..... +-..+...++.++..+.+...++.|......+..... .++...|. -+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 87662 2224566788999999999999999988877765111 11222221 223
Q ss_pred HHHHhcCChhhHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 307 QVLVNLKDLPGAEKCFKEWESGC--ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
-++...+..+...-+...+.... +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34445555555555555555554 5556778899999999999999999999999986444467789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH--------cCCCCCHHhHHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKK--------AVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~ 455 (490)
+++|++.++..+... |+ ...-..|...+.+.|+.++|.++++.+.. ....|+..........|
T Consensus 465 ~e~A~e~y~kvl~~~--------p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA--------PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHHHHHHHHhcC--------CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 999999999999987 54 66667788889999999999999999653 23335666777778888
Q ss_pred HhcCC
Q 011226 456 AAAGR 460 (490)
Q Consensus 456 ~~~g~ 460 (490)
.+.|+
T Consensus 537 ~~~gk 541 (895)
T KOG2076|consen 537 FQVGK 541 (895)
T ss_pred HHhhh
Confidence 88888
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-14 Score=128.92 Aligned_cols=203 Identities=16% Similarity=0.041 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA 343 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (490)
+.+|-++..+|.-.++.+.|++.|++..+.++. ...+|+.+..-+.....+|.|...|+......++ +...|--|...
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhh
Confidence 344444444444444555555544444442221 3344444444444444445555544444433222 22333334444
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc
Q 011226 344 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE 423 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 423 (490)
|.+.++++.|.-.|+.+.+-++. +.+....+...+.+.|+.++|+++++++..... -|+..-..-+..+...
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-------kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-------KNPLCKYHRASILFSL 570 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-------CCchhHHHHHHHHHhh
Confidence 44555555555555444443221 222333333344444455555555555444431 1222222223334444
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCC
Q 011226 424 KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVS 477 (490)
Q Consensus 424 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~ 477 (490)
+++++|...++++++.-| .+..++..+.+.|.+.|+...++...-.+..+.|.
T Consensus 571 ~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 571 GRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred cchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 445555555555544444 44444445555555555544444444444444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-14 Score=128.30 Aligned_cols=288 Identities=14% Similarity=0.042 Sum_probs=232.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC--CCCCHhhHHHHHHHHHHcCChhHHH
Q 011226 136 ELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS--IMPDSYTYNVWMRALAAVNDISGAE 213 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~ 213 (490)
.-+..+|...|+.+.+. +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+ +-++
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 34678999999996654 32344666778889999999999999999998752 11256677777655422 2233
Q ss_pred H-HHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 214 R-VIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 214 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
. +-+.+.+. .+..+.+|.++.++|.-+++.+.|++.|++..+... ....+|+.+..-+.....+|.|...|+..+.
T Consensus 407 s~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 407 SYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 3 33445554 778899999999999999999999999999987432 2678999999999999999999999998854
Q ss_pred hCCCCCchhH---HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 011226 293 AFPNTANISY---LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA 369 (490)
Q Consensus 293 ~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 369 (490)
.|...| .-+...|.+.++++.|+-.|+...+.++. +.+....+...+.+.|+.|+|+++++++...+.+ |+
T Consensus 484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 344444 45778899999999999999999998887 7778888889999999999999999999987655 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV 445 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 445 (490)
..--..+..+...+++++|+..++++.+.- |+ ..+|..+...|.+.|+.+.|..-|..+.+++|++..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 555556677888899999999999999875 65 777888899999999999999999999999986543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-12 Score=109.35 Aligned_cols=291 Identities=13% Similarity=0.078 Sum_probs=213.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHH
Q 011226 136 ELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERV 215 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 215 (490)
.|+|..|+++..+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+..-.++....-+..+.....||.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 58999999998887776642 24455566667778888999999988887753345566666777788888899999988
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH-------HHHHHHHHHHHhcCChhHHHHHHH
Q 011226 216 IEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-------SAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
+.++.+. .+-++........+|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...|+
T Consensus 176 v~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 8888887 5667777888888999999999999999999888775543 456666666666666666566666
Q ss_pred HHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 011226 289 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN 368 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 368 (490)
..... .+-++..-.+++.-+...|+.++|.++..+..+.+..|+. ...-.+.+.++.+.-++..+.-.+.. .-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 65433 2334555667777888888888888888888877766541 12223455667777677666666542 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 443 (490)
+..+..+...|.+.+.+.+|.+.|+...+.+ |+..+|..+.+++.+.|+.++|..+.++.+..-.+|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLR--------PSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 4667778888888888888888888888776 888888888888888888888888888877544333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-11 Score=105.78 Aligned_cols=377 Identities=17% Similarity=0.096 Sum_probs=266.6
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHH-HHHHHHHHHcCCHHH
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTY-GSLLNCYCKELMTEK 141 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~ 141 (490)
..+.+.|..+.|.+.|......- +-....|..|...+ .+.+.+..+...+... +...- -.+..++-...+.++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~l~~~l~~~--~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSILVVGLPSD--MHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHHHHhcCccc--chHHHHHHHHHHHHHHHHHHH
Confidence 34566788888999888876553 34555555554444 3344444433333320 11111 234466777778999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCC--CCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI--MPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
+.+-.+.....|.+.+...-+....+.-...++++|+.+|+++.+... --|..+|..++-.- ..+-..+ -+-+..
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~skLs-~LA~~v 322 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDKSKLS-YLAQNV 322 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhhHHHH-HHHHHH
Confidence 999999999988844444444444556678899999999999988731 11556776665433 2222211 111222
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCc
Q 011226 220 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 299 (490)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 299 (490)
... ..--+.|...+.+.|.-.++.++|...|++..+.+. .....|+.+..-|...++...|.+-++..++-++. |-
T Consensus 323 ~~i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-Dy 398 (559)
T KOG1155|consen 323 SNI--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DY 398 (559)
T ss_pred HHh--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hH
Confidence 222 344556777899999999999999999999998664 35678999999999999999999999999886653 77
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011226 300 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 379 (490)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (490)
..|-.|.++|.-.+...-|.-.|++.....+. |...|.+|.++|.+.++.++|++.|.+....|-. +...+..+...|
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLy 476 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLY 476 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 78999999999999999999999999987665 8999999999999999999999999999986533 557888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 380 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
-+.++.++|...|++.++.... .+...|. .....-|..-+.+.+++++|..........+ +...--+.|++.+.+
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~-eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~--~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSEL-EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE--TECEEAKALLREIRK 552 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC--chHHHHHHHHHHHHH
Confidence 9999999999999988774200 0001232 2333345667788999999988776666543 344444455554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-12 Score=110.51 Aligned_cols=391 Identities=11% Similarity=0.019 Sum_probs=257.1
Q ss_pred HHHHHhccCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCC
Q 011226 61 TLKKLRDRKLYYPALKLSENMEKRGMNKT-VSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELM 138 (490)
Q Consensus 61 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 138 (490)
.-..+.++|++++|++.|.+.+... |+ +.-|.....+|...|+|+++.+.-....+..|+ +..+..-..++-..|+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence 3446778999999999999998775 66 667788888899999999999888888886666 4467777778888888
Q ss_pred HHHHHHHHHHH-HhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHH-CC--CCCCHhhHHHHHHHH-----------
Q 011226 139 TEKAEALLEKM-KELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKA-SS--IMPDSYTYNVWMRAL----------- 203 (490)
Q Consensus 139 ~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~p~~~~~~~l~~~~----------- 203 (490)
+++|+.=+.-. +..|+ .|..+--.+=+.+-+ .|....++-.+ .+ +-|......+....+
T Consensus 199 ~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGF-QNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHHHHHhhhHHHHhhhc-ccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 88776432221 11111 111111111011111 01111111111 11 112222222211111
Q ss_pred ------------HH--cC---ChhHHHHHHHHHHHCCCCCC-----CH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 204 ------------AA--VN---DISGAERVIEEMKRDGRVAA-----DW------TTFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 204 ------------~~--~~---~~~~a~~~~~~~~~~~~~~~-----~~------~~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
.. .+ .+..|...+.+-.......+ |. .+......-+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 00 01 22333333322211110111 11 11111222233468889999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 011226 256 ENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIR 335 (490)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (490)
+.....++ ..|-.+..+|....+.++.+..|+.....++. ++.+|..-.+.+.-.++++.|..-|++..+..+. +..
T Consensus 353 I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~ 429 (606)
T KOG0547|consen 353 IKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAY 429 (606)
T ss_pred HhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhH
Confidence 88655433 33777888899999999999999999887765 6667877788888889999999999999988776 777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCC-cCCHHHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKW-VPSSETIR 414 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~p~~~~~~ 414 (490)
.|..+.-+..+.+++++++..|++.+++ ++--+..|+.....+...+++++|.+.|+..++...+....+ .+-+.+..
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 7777777788899999999999999986 455678999999999999999999999999998862111100 11122223
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
.++. +.-.+++..|..+++++.+.+| ....+|..|...-.+.|+..+++
T Consensus 509 a~l~-~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 509 ALLV-LQWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred hHhh-hchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHH
Confidence 3332 2234899999999999999999 88899999999999999966654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-12 Score=109.41 Aligned_cols=284 Identities=12% Similarity=0.098 Sum_probs=203.5
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCC--CCCHhHHHHHHHHHHHcCCHHHHHHH
Q 011226 68 RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET--SKNHLTYGSLLNCYCKELMTEKAEAL 145 (490)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 145 (490)
.|+|.+|.....+-.+.+-.| ...|....++..+.|+.+.+-.++.++.+. .++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 688889988888877777443 445666667777888888888888888874 45556677777788888888888888
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 146 LEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-------YTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
++++.+.+. .+.........+|.+.|++..+..++..+.+.|.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 888887764 45677788888888888888888888888888765444 3466666666666666665666666
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC
Q 011226 219 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 298 (490)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 298 (490)
..+. ...++..-..++.-+.+.|+.++|.++.++..+++..|+.. . .-.+.+.++.+.-++..+.-.+..+. +
T Consensus 255 ~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 255 QPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred ccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 6665 45555556677888888888888888888887776655511 1 12345667777666666665555432 4
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 299 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
+..+.+|...|.+.+.+.+|...|+...+. .|+...|+.+.+++.+.|+..+|.++.++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 466677777778888888888888765553 45777777778888888888888777777664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-10 Score=102.59 Aligned_cols=388 Identities=10% Similarity=0.029 Sum_probs=242.2
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCY 133 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 133 (490)
+...+...+..=.+++.+..|..+++.....-...|. .|...+..--..|++..|.++|+.-.+..|+...|.+.|..-
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFE 184 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4444555666667788888888888888766422232 233444445567888888999888888788888898888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC-CC-CCCHhhHHHHHHHHHHcCChhH
Q 011226 134 CKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SI-MPDSYTYNVWMRALAAVNDISG 211 (490)
Q Consensus 134 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 211 (490)
.+.+.++.|..++++..-.. |++.+|--....-.+.|+...|..+|....+. |- ..+...|++....-.++..++.
T Consensus 185 lRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred HHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999888887744 88888888888778888888888888776653 10 0112223333333333344444
Q ss_pred HHHHHHHHHHCC------------------------------------------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011226 212 AERVIEEMKRDG------------------------------------------RVAADWTTFSNLASIYVEAGLFEKAE 249 (490)
Q Consensus 212 a~~~~~~~~~~~------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~ 249 (490)
|.-+|.-.+..- ..+.|..+|-..+..-...|+.+...
T Consensus 263 ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 263 ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHH
Confidence 444444443320 14555566666666666667777777
Q ss_pred HHHHHHHHccCCCCH--HHHHHH----HH----HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHH----HHhcCCh
Q 011226 250 RALKELENRNAHRDL--SAYQFL----IT----LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV----LVNLKDL 315 (490)
Q Consensus 250 ~~~~~~~~~~~~~~~--~~~~~l----~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~ 315 (490)
++|++.... ++|-. ..|... |+ .-....+.+.+.++|+...+. ++...+||.-+--. -.++.++
T Consensus 343 e~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l 420 (677)
T KOG1915|consen 343 ETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNL 420 (677)
T ss_pred HHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHccc
Confidence 777776653 32321 111111 11 112346666777777766653 22234444333222 2356677
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011226 316 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKA 395 (490)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 395 (490)
..|.+++...... -|-..+|...|..-.+.++++.+..+++..++.++. +..+|......-...|+.+.|..+|+-+
T Consensus 421 ~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 421 TGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred HHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7777777765543 345566666777777777788888888887776443 5566766666666777888888888777
Q ss_pred HhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 396 IDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 396 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
+.... .......|.+.|..-...|.++.|..+++++++... ...+|-++...-.
T Consensus 498 i~qp~-----ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~--h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 498 ISQPA-----LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ--HVKVWISFAKFEA 551 (677)
T ss_pred hcCcc-----cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc--cchHHHhHHHHhc
Confidence 76632 112345566666666777888888888888777553 4446655555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-12 Score=104.67 Aligned_cols=286 Identities=16% Similarity=0.140 Sum_probs=210.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH------hhHHHHHHHHHHcCCh
Q 011226 136 ELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS------YTYNVWMRALAAVNDI 209 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~ 209 (490)
.++.++|.++|-+|.+.+. -+..+.-+|.+.|-+.|..|.|+++-+.+.+. ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 4778899999988888542 34445567778888889999999988888764 332 2334566778888999
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHhcCChhHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD----LSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
|.|+.+|..+.+.| .--......|+..|-...+|++|++.-+++.+.+..+. ...|.-+...+....+.+.|..
T Consensus 124 DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999998864 33445667889999999999999999998888665544 2345556666667788999999
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
++.+..+.+++ .+..-..+.+.....|+++.|.+.++.+.+.++..-..+...|..+|...|+.++....+.++.+...
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 99988877654 34444567788889999999999999999988777778888999999999999999999999887533
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 011226 366 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ---EKDVDGAEGFLEILKK 438 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 438 (490)
....-..+...-....-.+.|...+.+-+... |+...+..++..-.. .|...+-...++.|..
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--------Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLRRK--------PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--------CcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333344443344445566777766666665 999999888886654 3345555566666654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-11 Score=107.11 Aligned_cols=430 Identities=10% Similarity=-0.012 Sum_probs=301.6
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhc----CC---CCCC
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDL----PE---TSKN 122 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~---~~~~ 122 (490)
+...++.....+...+.-.|++.+|..+...-.-.+ -|..+......++.+..+++.|..++... .. ...+
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~--~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEK--RDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 334677777788888888899998888877664333 46777788888899999999999999843 22 2222
Q ss_pred H-h------HH-----HHHH-------HHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc------------
Q 011226 123 H-L------TY-----GSLL-------NCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKT------------ 171 (490)
Q Consensus 123 ~-~------~~-----~~li-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------ 171 (490)
. . .+ +.-. ..|....+.++|...|.+....++. ....+..++....-.
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 1 0 01 0000 1244556777887777776654321 112222222211100
Q ss_pred -----CC-CCcHHHHHHHH----H------------HCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH
Q 011226 172 -----GH-PEKIPAIIQEM----K------------ASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 229 (490)
Q Consensus 172 -----~~-~~~a~~~~~~~----~------------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 229 (490)
+. .+....+|+-- . -.+..-+.........-+...+++.+..++++.+.+. .|+..
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~ 278 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHL 278 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCc
Confidence 00 01111111100 0 0112234444555566677889999999999999997 78888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 230 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
..+..-|.++...|+..+-..+=.++.+.- +....+|-++.--|...|+.++|.+.|.+.....+.- ...|..+..+|
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f-gpaWl~fghsf 356 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSF 356 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHh
Confidence 888888889999999888888878887753 3467889999888889999999999999876544332 34678888999
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 389 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 389 (490)
+-.|..|+|...+....+.-+. ...-+--+.--|.+.++.+.|.+.|.+..... +-|+...+-+.-.....+.+.+|.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHH
Confidence 9999999999988887653222 11122234455888999999999999988752 235667777766677789999999
Q ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHH
Q 011226 390 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRL 469 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m 469 (490)
.+|+..+..-.....+..--..+++.|..+|.+.+.+++|+..+++.+...+ .|..++.++.-.|...|+...|+-..=
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 9999888331110000111345789999999999999999999999999999 999999999999999999999998888
Q ss_pred hhCCCCCCHHHHHHHHHhhc
Q 011226 470 KMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 470 ~~~~~~p~~~~~~~l~~~c~ 489 (490)
++..+.|+..+..-+.+.|+
T Consensus 514 KaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 514 KALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHhcCCccHHHHHHHHHHH
Confidence 89999999988887777765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-10 Score=94.25 Aligned_cols=385 Identities=14% Similarity=0.036 Sum_probs=202.7
Q ss_pred CccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhh
Q 011226 36 DVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 115 (490)
...+..+++--...+.......-..+...+...|++++|+..+..+.... .++......+.-+..-.|.+.+|..+...
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 44444555443333333333334445566778899999999999987765 45555555566666677889999888877
Q ss_pred cCCCCCCHhHHHHHHHHHHHcC------------------------------CHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 011226 116 LPETSKNHLTYGSLLNCYCKEL------------------------------MTEKAEALLEKMKELNLGFSSMPFNSLM 165 (490)
Q Consensus 116 ~~~~~~~~~~~~~li~~~~~~~------------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 165 (490)
..+ ++..-..|.....+.+ .+.+|++++.+.+..+ |+-...|.-+
T Consensus 117 a~k---~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ 191 (557)
T KOG3785|consen 117 APK---TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYM 191 (557)
T ss_pred CCC---ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHH
Confidence 765 2222222222222223 3455666666655543 4444444433
Q ss_pred H-HHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCC---------------------
Q 011226 166 T-LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG--------------------- 223 (490)
Q Consensus 166 ~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------- 223 (490)
. +|.+..-++-+.++++...+. ++-++...|.......+.=+-..|++-...+...+
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 3 444555566666666655543 12122222222222222111111111111111100
Q ss_pred -----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC-------hhHHHH
Q 011226 224 -----------RVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN-------LSEVYR 285 (490)
Q Consensus 224 -----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~ 285 (490)
...| ..--.|+-.|.+.++..+|..+.+++.. .++.-|-.-.-..+..|+ ..-|.+
T Consensus 271 EgALqVLP~L~~~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIP--EARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred ccHHHhchHHHhhCh--HhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 0111 1122344555666666666666655431 111111111111222222 233444
Q ss_pred HHHHHHHhCCCCCch-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 286 IWRSLRLAFPNTANI-SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
.|.-+-..+..-|.. --.++..++.-..+++++...+..+...-...|...+| +.++++..|.+.+|.++|-++....
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChh
Confidence 444333333322222 22344555555667777777777776655554444444 6788888899999999988776554
Q ss_pred CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011226 365 ADPNAKTWE-IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443 (490)
Q Consensus 365 ~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 443 (490)
++ |..+|- .+.++|.+++.++.|++++-++-..+ -.......+..-|.+.+.+--|.+.|+.+...+|.|
T Consensus 424 ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~--------e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 424 IK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS--------ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch--------hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 44 455554 45567888899988887765543222 223334455567888888888888888888877643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-12 Score=105.73 Aligned_cols=232 Identities=13% Similarity=0.083 Sum_probs=174.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 276 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (490)
+.+.++|.+.|-+.+|.+.++...+. .|-+.||..|.+.|.+..++..|+.++.+-.+. .+-|+....-+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 56778888888888888888887774 466777778888888888888888888877663 22344444556777777
Q ss_pred cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 011226 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL 356 (490)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (490)
.++.++|.++|+...+..+ .++.....+...|...++++.|..+++.+.+.|.. ++..|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 8888888888888877654 25566666777777888888888888888888876 778888888888888888888888
Q ss_pred HHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011226 357 KERARRRGADPNA--KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 434 (490)
Q Consensus 357 ~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 434 (490)
|++....--.|+. ..|-.+-......|++..|.+.|+-.+..+. .+...++.|.-.-.+.|+++.|..++.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-------~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-------QHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-------chHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8887764333443 4566666666777888888888888877761 336778888777788888888888888
Q ss_pred HHHHcCC
Q 011226 435 ILKKAVD 441 (490)
Q Consensus 435 ~~~~~~~ 441 (490)
.+.+..|
T Consensus 454 ~A~s~~P 460 (478)
T KOG1129|consen 454 AAKSVMP 460 (478)
T ss_pred HhhhhCc
Confidence 8777665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=116.77 Aligned_cols=82 Identities=2% Similarity=-0.079 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
|++.+|..++.+-...|+.+.|..++.+|.+.|...+.+-|..++-+ .++...+..+++.|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 45555555555555555555555555555555554444444444333 444455555555555555555555554444
Q ss_pred HHHHh
Q 011226 342 GAYAK 346 (490)
Q Consensus 342 ~~~~~ 346 (490)
..+..
T Consensus 279 ip~l~ 283 (1088)
T KOG4318|consen 279 IPQLS 283 (1088)
T ss_pred Hhhhc
Confidence 44444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-09 Score=96.48 Aligned_cols=421 Identities=16% Similarity=0.124 Sum_probs=272.6
Q ss_pred hhHHHHHHhhcCC--CCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011226 22 EEALYDRLFKKGS--SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDL 99 (490)
Q Consensus 22 ~~~l~~~l~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (490)
...+|+++.+... .-..-..+++.+.+ +.+....++.-.--.+...|+-++|.+........++ -+...|+.+.-.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHH
Confidence 4467777777543 22222333444444 4555555665555556778999999999988877663 466677777767
Q ss_pred HHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHH
Q 011226 100 VAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIP 178 (490)
Q Consensus 100 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 178 (490)
+-...++++|++.|..... .+-|...|.-+.-.-++.|+++........+.+... .....|..++.++.-.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777899999999999888 455677888777777888999998888888887643 45677888888888999999999
Q ss_pred HHHHHHHHCC-CCCCHhhHHHHH------HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011226 179 AIIQEMKASS-IMPDSYTYNVWM------RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERA 251 (490)
Q Consensus 179 ~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 251 (490)
.++++..+.. -.|+...+.... ......|..+.|.+.+..-... +......-..-...+.+.+++++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 9999998764 245665554332 3456678888888888776654 333344445667888899999999999
Q ss_pred HHHHHHccCCCCHHHHHHHH-HHHHhcCChhHHH-HHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 011226 252 LKELENRNAHRDLSAYQFLI-TLYGQTGNLSEVY-RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC 329 (490)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 329 (490)
+..+...+ ||...|...+ .++....+..++. .+|....+.-+.. ...-..=+.......-.+....++....+.|
T Consensus 242 y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 99998854 6666665544 4444444444454 5666655432211 1100000111111122233344555555666
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cC----------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHH
Q 011226 330 ATYDIRVTNVMIGAYAKEGRLENAEELKERARR----RG----------ADPNAKTWE--IFSDYYLRNGDMKLAVDCLE 393 (490)
Q Consensus 330 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~ 393 (490)
+.+ ++..+...|-.-...+-..++.-.+.. .| -+|....|. .++..+-..|+++.|..+++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 542 344444444332222211122211211 10 134544443 45667788899999999999
Q ss_pred HHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCc
Q 011226 394 KAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS 462 (490)
Q Consensus 394 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 462 (490)
..+... |+ +..|..=.+.+.-.|++++|..++++..+.+. +|...-.--++...++.+..
T Consensus 396 ~AIdHT--------PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 396 LAIDHT--------PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHhccC--------chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccH
Confidence 888876 76 55666667788888999999999999999888 88777777788888887733
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-09 Score=98.56 Aligned_cols=424 Identities=15% Similarity=0.082 Sum_probs=243.8
Q ss_pred hhHHHHHHhhcCCCCccHHHHHH---HHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLN---QFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLD 98 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (490)
.+.++..+...+ ..+.+.+++. .+.. +.+.+...+..-+-++.+.++|++|+.+.+.-.... .+..-+-.-.-
T Consensus 12 ~~~l~t~ln~~~-~~~e~e~a~k~~~Kil~-~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAY 87 (652)
T KOG2376|consen 12 LEALLTDLNRHG-KNGEYEEAVKTANKILS-IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHHhc-cchHHHHHHHHHHHHHh-cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHH
Confidence 467777777766 3444554444 4333 336777778888888888888988885554321110 11111011123
Q ss_pred HHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH-hcCCCCcH
Q 011226 99 LVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYA-KTGHPEKI 177 (490)
Q Consensus 99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 177 (490)
+..+.+..++|+..++.... -+..+...-...+-+.|++++|+++|+.+.+.+. + .+...+.+-+ ..+....+
T Consensus 88 c~Yrlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-d---d~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-D---DQDEERRANLLAVAAALQV 161 (652)
T ss_pred HHHHcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-c---hHHHHHHHHHHHHHHhhhH
Confidence 34477888999888885443 2333445555667788999999999998877653 2 2222222111 11111111
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHH---HHHHHcCChhHHHHHHHHHHHCCC------CCC--CHH-----HHHHHHHHHHH
Q 011226 178 PAIIQEMKASSIMPDSYTYNVWM---RALAAVNDISGAERVIEEMKRDGR------VAA--DWT-----TFSNLASIYVE 241 (490)
Q Consensus 178 ~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~-----~~~~l~~~~~~ 241 (490)
. .+......| ..+|..+. ..+...|++.+|+++++...+.+. ... +.. .-.-|...+-.
T Consensus 162 ~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 122222333 23444443 356678999999999998833210 111 111 11235556677
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHH----HHHHHHHHhcCChh-----------------HHHHHH-------------
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAY----QFLITLYGQTGNLS-----------------EVYRIW------------- 287 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-----------------~a~~~~------------- 287 (490)
.|+.++|.+++....+... +|.... |.|+. .....++. .++.-+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888765 343211 11211 11111110 000000
Q ss_pred ------------HHHHHhCCC-CCchhHHHHHHHHHh--cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 288 ------------RSLRLAFPN-TANISYLNMIQVLVN--LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 288 ------------~~~~~~~~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
++.....+. .....+..++..+.+ ......+.+++....+..+.-...+.-..+......|+++.
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 001111111 112334444444332 22466777777777766655445666777888899999999
Q ss_pred HHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 353 AEELKE--------RARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 353 a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
|.+++. .+.+.+..|-.+ ..+...+.+.++-+.|..++.+.+..-......-..-..++..+...-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 556655555444 4566667777777777777777665421000000011233444445556789
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-CcHHH
Q 011226 425 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR-TSPVM 465 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~ 465 (490)
+.++|...++++.+..+ +|..+...++.+|++..- .++.+
T Consensus 473 ~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~d~eka~~l 513 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNP-NDTDLLVQLVTAYARLDPEKAESL 513 (652)
T ss_pred chHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999 999999999999999776 45544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-11 Score=115.20 Aligned_cols=264 Identities=12% Similarity=0.041 Sum_probs=180.7
Q ss_pred CHhhHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHH
Q 011226 192 DSYTYNVWMRALAA-----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE---------AGLFEKAERALKELEN 257 (490)
Q Consensus 192 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~ 257 (490)
+...|...+++... .+++++|...|++..+. .|.+...|..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34445555554322 23467899999999986 56666677777665542 2447899999999888
Q ss_pred ccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 011226 258 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT 337 (490)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (490)
..+ -+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...++...+..+. +...+
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 653 36777888888888999999999999999887654 4556777888899999999999999999887665 33333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHH
Q 011226 338 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTF 416 (490)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l 416 (490)
..++..+...|++++|...++++.+...+-+...+..+..++...|++++|...+.++.... |+ ....+.+
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--------~~~~~~~~~l 481 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--------ITGLIAVNLL 481 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--------chhHHHHHHH
Confidence 44455566788999999999998765322234456677778889999999999998876664 54 3344555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCC-CcHHHHHHHhhC
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVD-DLGVEVFEPLIRTYAAAGR-TSPVMLRRLKME 472 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-~~~~~~~~m~~~ 472 (490)
...|...| +.|...++.+.+..- .+....+ +...|.-.|+ ....+++.+.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 535 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMWNKFKNE 535 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHHHHhhcc
Confidence 55667777 477777777665322 1222222 4444444555 333444555544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=103.61 Aligned_cols=262 Identities=14% Similarity=0.151 Sum_probs=213.0
Q ss_pred HHHHcCChhHHHHHHHHHHHC------C--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 202 ALAAVNDISGAERVIEEMKRD------G--RVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~------~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
.|...+|+..|........+. | ....|+.--+.+.++|.+.|-+.+|.+.|+.-.+.- |-+.||-.|-+.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskv 265 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKV 265 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHH
Confidence 345566777776544443321 1 133444445789999999999999999999887753 556688889999
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 274 YGQTGNLSEVYRIWRSLRLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
|.+..++..|+.++.+..+.. |-.+|| .-+...+...++.++|.++++...+..+. ++.....+...|.-.++++.
T Consensus 266 Y~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHH
Confidence 999999999999999988754 445555 56778888899999999999999887655 78888888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC--HHHHHHHHHHHHhcCChHHHH
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~ 430 (490)
|+..++++...|+. +...|..+.-+|.-.++++-++..|++.+... ..|+ ..+|..+.......|++..|.
T Consensus 343 AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlsta------t~~~~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTA------TQPGQAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred HHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc------cCcchhhhhhhccceeEEeccchHHHH
Confidence 99999999999987 88899999999999999999999999998875 2244 678989998899999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHHhhCCCCCCH
Q 011226 431 GFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSE 478 (490)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~ 478 (490)
+.|+-.+..++ .+..++|.|.-.-.+.|+ .+.+++.. +..+.|+.
T Consensus 416 rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~--A~s~~P~m 462 (478)
T KOG1129|consen 416 RCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNA--AKSVMPDM 462 (478)
T ss_pred HHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHH--hhhhCccc
Confidence 99999999998 899999999999999999 44555554 33445553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-09 Score=90.77 Aligned_cols=371 Identities=12% Similarity=0.070 Sum_probs=233.4
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHc-CCH-HHH-------------HHHHHHHHhCC---
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKE-LMT-EKA-------------EALLEKMKELN--- 153 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~-~~a-------------~~~~~~~~~~~--- 153 (490)
.-...+.+|...++-+.|.......+.....+.. |.++.-+-+. ++- +.. +..+.-..+.+
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~i-nlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g 177 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRI-NLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhH-HHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc
Confidence 3445677777888888998888888773222222 2222222222 221 211 12222222221
Q ss_pred ------------CCCCcchHHHHHHHHHh--cCCCCcHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 154 ------------LGFSSMPFNSLMTLYAK--TGHPEKIPAIIQEMKAS-SIMPDSYTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 154 ------------~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
.+|...+...-+.++++ .++...+...+-.+... -++-|+.....+.+++...|+.++|+..|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 22333333334444433 44445555544444333 2555777788889999999999999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC
Q 011226 219 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 298 (490)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 298 (490)
.... .+.+........-.+.+.|+.++...+...+.... .-+...|..-.......++++.|+.+-++.++.... +
T Consensus 258 ~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~ 333 (564)
T KOG1174|consen 258 TLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-N 333 (564)
T ss_pred HhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-c
Confidence 8875 45555555555666677888888887777776532 123334444445556677888888888877665432 3
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-H
Q 011226 299 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS-D 377 (490)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~ 377 (490)
...|..=...+...|+.++|.-.|+......+. +...|..|+.+|...|++.+|...-+...+. +.-+..+...+. .
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTL 411 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcce
Confidence 334444445677788889998888887776543 7788999999999999998888777666553 223444544442 2
Q ss_pred HHH-hcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 378 YYL-RNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 378 ~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
.|. ...--++|..+++..++.. |+ ......+...|...|..++++.++++.+..- +|....+.|.+.+
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~--------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKIN--------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--PDVNLHNHLGDIM 481 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccC--------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--cccHHHHHHHHHH
Confidence 222 2223467777777777665 66 4566677777888888888888888877644 6777888888888
Q ss_pred HhcCCCcHHHHHHHhhCCCCCCHH
Q 011226 456 AAAGRTSPVMLRRLKMEKVEVSEA 479 (490)
Q Consensus 456 ~~~g~~~~~~~~~m~~~~~~p~~~ 479 (490)
...+...+++-..-.+..+.|+..
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcCccch
Confidence 887777777777777777766554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-11 Score=103.21 Aligned_cols=197 Identities=18% Similarity=0.136 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 204 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 204 (490)
.+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 344444444444555555555544444321 223344444444444555555555554444432 112333444444455
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHH
Q 011226 205 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY 284 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (490)
..|++++|...++...+....+.....+..+...+...|++++|...+++...... .+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555544321122233344444455555555555555555444321 12334444455555555555555
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 011226 285 RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 325 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 325 (490)
..+++..... ..+...+..+...+...|+.+.|..+.+.+
T Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555544431 122333334444444555555555544444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-10 Score=112.75 Aligned_cols=251 Identities=12% Similarity=0.012 Sum_probs=131.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh---------cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK---------TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
++++|..+|++..+..+ -+...|..+..++.. .+++++|...+++..+.. +-+...+..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 35567777777666542 123344444433332 123456666666666543 1244555556666666677
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
+++|...|+++.+. .|.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 77777777776665 4555566666666666777777777777766664332 12222233334555666677776666
Q ss_pred HHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC
Q 011226 289 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR-GADP 367 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p 367 (490)
++......-+...+..+..++...|+.++|...+..+....+. +....+.+...|...| +.|...++.+.+. .-.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 6654432112333455556666667777777766665444222 3334444444555555 3555555555432 1112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 21222 22233444554444444 5555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-10 Score=100.49 Aligned_cols=201 Identities=15% Similarity=0.066 Sum_probs=142.5
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 455666677777778888888888777765 455566777777777788888888888877776543 34556666777
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
.+...|++++|...++........+ ....+..+...+...|++++|...+.......+. +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 7777888888888887776542222 2334556677778888888888888887766544 4566777778888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
+|...+++..+. ...+...+..+...+...|+.++|..+++.+...
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888888888775 2335556666677777788888888887776554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-08 Score=91.27 Aligned_cols=389 Identities=12% Similarity=0.107 Sum_probs=252.8
Q ss_pred HhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC----------------------HHHHHHHH
Q 011226 56 WEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG----------------------IDAAENYF 113 (490)
Q Consensus 56 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~ 113 (490)
..+.++...|.+.|.+++|.++|++..+.- .+...|..+.++|+.-.. ++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 446778889999999999999999987664 355556666666653211 22233334
Q ss_pred hhcCCC-------------CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------cchHHHHHHHHHhcCCC
Q 011226 114 VDLPET-------------SKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS------SMPFNSLMTLYAKTGHP 174 (490)
Q Consensus 114 ~~~~~~-------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 174 (490)
+.+... +.++..|..-+. +..|+..+-...+.+.... +.|. ...|..+...|-..|+.
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 443331 122333433332 2356777777788777653 2222 34677888889999999
Q ss_pred CcHHHHHHHHHHCCCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC----------CCC------CHHHHHHH
Q 011226 175 EKIPAIIQEMKASSIMPD---SYTYNVWMRALAAVNDISGAERVIEEMKRDGR----------VAA------DWTTFSNL 235 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~l 235 (490)
+.|..+|++..+-..+.- ..+|......-.+..+++.|.++++....... .++ +...|..+
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999998877543322 23455555666677788899998888765320 111 22345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch-hHHHHHHHHH---h
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-SYLNMIQVLV---N 311 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~---~ 311 (490)
++.--..|-++....+++++.+..+. ++...-.....+-.+.-++++.+++++-+.....|+.. .|+..+.-+. .
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 66666778888899999999886553 33222222333455667889999998877766666554 3444443333 2
Q ss_pred cCChhhHHHHHHHHHhcCCCCChh-h-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIR-V-TNVMIGAYAKEGRLENAEELKERARRRGADPNA--KTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~-~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 387 (490)
....+.|..+|++..+..+ |... + |-.....--+.|-...|+.++++.... +.+.. ..|+..|.--+..=-+..
T Consensus 563 g~klEraRdLFEqaL~~Cp-p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCP-PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4578999999999998544 3322 1 111122223468888899999997654 44433 467877765554444566
Q ss_pred HHHHHHHHHhcCCCCCCCCcCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHHhcCC
Q 011226 388 AVDCLEKAIDTGRGDGGKWVPSSET---IRTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 388 A~~~~~~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
...+|+++++.- |+... ...+...-.+.|..+.|..++....+ .+|..+..-|.+.=.--.++|+
T Consensus 641 TR~iYekaIe~L--------p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 641 TREIYEKAIESL--------PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred cHHHHHHHHHhC--------ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 678888888774 66433 34445566789999999999988777 5676788899998888899998
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-09 Score=98.12 Aligned_cols=285 Identities=11% Similarity=0.009 Sum_probs=220.9
Q ss_pred CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH
Q 011226 156 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 235 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 235 (490)
.+......-.+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+=.++.+. .|..+.+|-++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhH
Confidence 44555566666777888999999999988776 3445555666677888999988888888888887 78888899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCh
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL 315 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (490)
.-.|...|+..+|.+.|.+....... =...|-.+...|+-.|..++|...+...-+.-+.. ..-+.-+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHhccH
Confidence 99999999999999999887653221 24578888899999999999999888776653321 11233345568889999
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 011226 316 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR--GADP----NAKTWEIFSDYYLRNGDMKLAV 389 (490)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~ 389 (490)
..|.++|.+.....+. |+...+.+.-.....+.+.+|..+|+..+.. .+.+ -..+++.+..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999998887665 7888888888888889999999999888731 1111 2345778888999999999999
Q ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 390 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
..+++.+... .-+..++.++.-.|...|+++.|.+.|.+.+-..| .|..+-..|-.+
T Consensus 476 ~~~q~aL~l~-------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p-~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP-DNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC-ccHHHHHHHHHH
Confidence 9999999886 25788999999999999999999999999998886 554444444433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-11 Score=110.78 Aligned_cols=222 Identities=14% Similarity=0.057 Sum_probs=139.0
Q ss_pred HHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCC
Q 011226 41 QQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETS 120 (490)
Q Consensus 41 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 120 (490)
.++-.+...|..|+..+|.++|..|+..|+++.|- +|.-|.-...+.+...++.++......++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 45667777899999999999999999999999998 9999987777778888999998888888877765 4
Q ss_pred CCHhHHHHHHHHHHHcCCHHH---HHHHHHHHHh----CCC-----------------CCCcchHHHHHHHHHhcCCCCc
Q 011226 121 KNHLTYGSLLNCYCKELMTEK---AEALLEKMKE----LNL-----------------GFSSMPFNSLMTLYAKTGHPEK 176 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~----~~~-----------------~~~~~~~~~l~~~~~~~~~~~~ 176 (490)
|...+|..|..+|...||+.. ..+.++.+.. .|+ -||.. .++......|-++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHH
Confidence 788899999999999998765 2232222221 121 11111 11111122222222
Q ss_pred HHHHH------------------------------HHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 011226 177 IPAII------------------------------QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVA 226 (490)
Q Consensus 177 a~~~~------------------------------~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 226 (490)
+++++ +......-.|++.+|.+++.+....|+.+.|..++.+|.+.| ++
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-fp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-FP 236 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-CC
Confidence 22222 211111113566666666666666666666666666666666 65
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC
Q 011226 227 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN 279 (490)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (490)
.+..-|-.|+-+ .++...+..++..|...|+.|+..|+...+..+..+|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 555554444443 55555566666666666666666666655555555443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-08 Score=95.25 Aligned_cols=368 Identities=13% Similarity=0.036 Sum_probs=249.7
Q ss_pred CCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-cchHH
Q 011226 85 GMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS-SMPFN 162 (490)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 162 (490)
.+.-+...|..+.-++.++|+++.+.+.|++... .......|+.+...|...|.-..|..+++.-......|+ ...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445677888888888899999999999998776 445567888898899999999999999988665442243 33333
Q ss_pred HHHHHHH-hcCCCCcHHHHHHHHHHC--C----CCCCHhhHHHHHHHHHHc-----------CChhHHHHHHHHHHHCCC
Q 011226 163 SLMTLYA-KTGHPEKIPAIIQEMKAS--S----IMPDSYTYNVWMRALAAV-----------NDISGAERVIEEMKRDGR 224 (490)
Q Consensus 163 ~l~~~~~-~~~~~~~a~~~~~~~~~~--~----~~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~ 224 (490)
..-..|. +.+..++++++-.+.... + +.| ..|..+.-+|... ....++++.+++..+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~-- 473 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF-- 473 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--
Confidence 3333343 356677777777666552 1 222 2333333333221 1245777888888887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-C---C--
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-T---A-- 298 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~-- 298 (490)
.+.|+.+...+.--|...++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+........ - +
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 344555555566677888899999999999988766678889999988888999999999988876543221 0 0
Q ss_pred -------------chhHHHHHHHHH-----------------------hcCChhhHHHHHHHHH--------hcC-----
Q 011226 299 -------------NISYLNMIQVLV-----------------------NLKDLPGAEKCFKEWE--------SGC----- 329 (490)
Q Consensus 299 -------------~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~----- 329 (490)
..|...++...- ..++..++....+.+. ..+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 001111111111 0011111211111110 000
Q ss_pred ------CCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011226 330 ------ATYD------IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 397 (490)
Q Consensus 330 ------~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 397 (490)
+.|+ ...|......+.+.+..++|...+.+..... ......|......+...|+..+|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 1111 1234456677788888999988888877652 22445566666677888999999999999998
Q ss_pred cCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHH
Q 011226 398 TGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEG--FLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML 466 (490)
Q Consensus 398 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 466 (490)
.. |+ +...+++..++.+.|+..-|.. ++..+.+.+| .+..+|..|...+-+.|+...+..
T Consensus 713 ld--------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 713 LD--------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred cC--------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHH
Confidence 87 65 7788999999999999988888 9999999999 999999999999999999655543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.4e-10 Score=103.19 Aligned_cols=186 Identities=12% Similarity=0.039 Sum_probs=122.8
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh----C----------CCCCc--hhHHHHHHHHHh
Q 011226 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA----F----------PNTAN--ISYLNMIQVLVN 311 (490)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~ 311 (490)
+..++..+...|++ + +|+.+-..|....+..-..+++...... + -.|+. .++..+.+.|..
T Consensus 130 ~~~yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVP-S--LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCc-h--HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 33444555555552 2 4555555555444444444444443321 0 12222 244556777888
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDC 391 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 391 (490)
.|++++|.++++...+..+. .+..|..-.+.+-+.|++.+|.+.++...+.+.. |...-+..+..+.++|++++|.++
T Consensus 207 ~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998887665 5778888888999999999999999999887554 555656667778899999999999
Q ss_pred HHHHHhcCCCCCCCCcCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 392 LEKAIDTGRGDGGKWVPSSETI--RTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+....+.+..|.....--.-.| .....+|.+.|++..|++.|..+.+
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9988877742111110001122 4556789999999999887766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-09 Score=102.55 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 011226 267 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 346 (490)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (490)
+..+...|-..|++++|+++++..+...+. .+..|..-...+-..|++.+|.+.++.....+.. |..+-+..+..+.+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 344555566666666666666666654332 2345555566666666666666666666665554 55555666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 347 EGRLENAEELKERARRRGADPNAK------TW--EIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
.|++++|.+++....+.+..|-.. .| .....+|.+.|++..|+..|..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 677777766666665544322211 11 22234566677776666665555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-09 Score=93.13 Aligned_cols=330 Identities=14% Similarity=0.018 Sum_probs=214.8
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcC
Q 011226 95 IHLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS-SMPFNSLMTLYAKTG 172 (490)
Q Consensus 95 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 172 (490)
...+-|.+.|.+++|++.+.+.++..|+ +..|.....+|...|+|++..+--...++.+ |+ +..+.--..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhc
Confidence 3456677889999999999999997788 7888999999999999999998888887754 43 334444455666677
Q ss_pred CCCcHHHHHHHH-HHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHH--------
Q 011226 173 HPEKIPAIIQEM-KASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR--DGRVAADWTTFSNLASIYVE-------- 241 (490)
Q Consensus 173 ~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-------- 241 (490)
++++|+.=.... +-.|+. |..+--.+=+.+- ..|..-.++-.+ +....|+.....+....+..
T Consensus 198 ~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred cHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 777665433222 111222 1111111111111 112222222222 11133444333322222211
Q ss_pred -----------------cC---CHHHHHHHHHHHHHc-cCCC-----CH------HHHHHHHHHHHhcCChhHHHHHHHH
Q 011226 242 -----------------AG---LFEKAERALKELENR-NAHR-----DL------SAYQFLITLYGQTGNLSEVYRIWRS 289 (490)
Q Consensus 242 -----------------~~---~~~~A~~~~~~~~~~-~~~~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (490)
.+ .+..|...+.+-... ...+ |. .+...-...+.-.|+.-.|..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 01 222232222221110 0001 11 1111111223446888899999999
Q ss_pred HHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 011226 290 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 369 (490)
.+...+.++. .|.-+...|....+.++..+.|....+.++. |+.+|..-.+.+.-.+++++|..=|++.+..... +.
T Consensus 352 ~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~ 428 (606)
T KOG0547|consen 352 AIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NA 428 (606)
T ss_pred HHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hh
Confidence 9887665433 3777888899999999999999999998877 7788888888888899999999999999985322 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD 442 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 442 (490)
..|..+.-+..+.+++++++..|++..+.- +..+..|+.....+...++++.|.+.|+.++++.+.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKKF-------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 556566666678899999999999999985 344899999999999999999999999999998874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-08 Score=85.81 Aligned_cols=314 Identities=11% Similarity=0.059 Sum_probs=225.3
Q ss_pred CCHhHHHHHHHHHHHc--CCHHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhh-H
Q 011226 121 KNHLTYGSLLNCYCKE--LMTEKAEALLEKMKEL-NLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYT-Y 196 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~ 196 (490)
|+..+....+.+++.. ++...|...+-.+... -.+-|+.....+...+...|+.++|...|+..... .|+..+ .
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 3333444455554443 4444444443333222 34467778889999999999999999999988764 343322 2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 276 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (490)
....-.+.+.|+.+....+...+... ..-+...|..-+......+++..|+.+-++..+... .+...+-.-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 22233456788888888888888775 334555555566666778899999999999887543 345566666677888
Q ss_pred cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH-HHHH-hcCChhHHH
Q 011226 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI-GAYA-KEGRLENAE 354 (490)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~ 354 (490)
.|++++|.-.|+..+...+ .+...|.-|+.+|...|.+.+|.-+-+...+.-. .+..+...+. ..+. ....-++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHH
Confidence 9999999999999877543 3678999999999999999999877776554322 2555554442 2222 222347888
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011226 355 ELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 433 (490)
Q Consensus 355 ~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 433 (490)
.+++...+. .|+- ...+.+...|...|..+.++.++++.+... ||....+.|.+.+...+.+++|.+.|
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------PDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------cccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 888887764 5554 455667778889999999999999999887 99999999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHH
Q 011226 434 EILKKAVDDLGVEVFEPLI 452 (490)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~ 452 (490)
..+++.+| .|..+...|=
T Consensus 495 ~~ALr~dP-~~~~sl~Gl~ 512 (564)
T KOG1174|consen 495 YKALRQDP-KSKRTLRGLR 512 (564)
T ss_pred HHHHhcCc-cchHHHHHHH
Confidence 99999998 7766665443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-08 Score=86.28 Aligned_cols=369 Identities=13% Similarity=0.071 Sum_probs=193.9
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTE 140 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~ 140 (490)
+..+..++++..|+.+++.-...+-+-...+-.-+..++.+.|++++|...+..+.. ..++...+..|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 556677899999999998776554332223334455677799999999999998877 6677778888887777789999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 011226 141 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 220 (490)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 220 (490)
+|..+-....+ ++..-..|+....+.++-++-..+-+.+... ..--.+|.......-.+++|++++.++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887655332 2223334444445566655555544444321 1222345555555566778888888777
Q ss_pred HCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc--CC------------------
Q 011226 221 RDGRVAADWTTFSN-LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT--GN------------------ 279 (490)
Q Consensus 221 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~------------------ 279 (490)
.. .|.....|. +.-+|.+..-++-+.++++-..+. ++-++...|..+....+. |+
T Consensus 179 ~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 179 QD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred hc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 64 244444333 344556666677777777665553 222233333333322221 11
Q ss_pred ---------------hhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 011226 280 ---------------LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 344 (490)
Q Consensus 280 ---------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (490)
-+.|++++-.+.+. -| ..-..++-.|.+.+++.+|..+.+.+.-. .|-..+...+. +
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~ 326 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--F 326 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--H
Confidence 12233332222221 11 12223455577888888888777664321 12222222222 2
Q ss_pred HhcC-------ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 011226 345 AKEG-------RLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 416 (490)
Q Consensus 345 ~~~~-------~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l 416 (490)
...| ...-|.+.|+-.-+.+..-|. .--.++...+.-..++++.+.++..+..-- ..|...-..+
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-------~NdD~Fn~N~ 399 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-------TNDDDFNLNL 399 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCcchhhhHH
Confidence 2222 234455555544333322221 112233333334444555555555444432 2333333345
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH-HHHHHHHhcCC
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE-PLIRTYAAAGR 460 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~ 460 (490)
..+.+..|++.+|+++|-++...++ .|..+|. .|.++|.+.|+
T Consensus 400 AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCC
Confidence 5566666666666666655544444 3333333 33444444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-12 Score=79.40 Aligned_cols=49 Identities=29% Similarity=0.435 Sum_probs=30.9
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 011226 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYA 169 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 169 (490)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-07 Score=82.71 Aligned_cols=416 Identities=12% Similarity=0.086 Sum_probs=206.6
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhhCC---HHHHHHHHhhcCCCCCCH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRG------MNKTVSDQAIHLDLVAKVQG---IDAAENYFVDLPETSKNH 123 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~ 123 (490)
.++..-...+..+++.+++++|-+.+....... .+.+...|..+.+..++.-+ --....+++.+....+|.
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq 246 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ 246 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH
Confidence 344445566667777777777777777664322 12344455555555554322 223445555555544553
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC----------------------CCcHHH
Q 011226 124 --LTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGH----------------------PEKIPA 179 (490)
Q Consensus 124 --~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~ 179 (490)
..|.+|..-|.+.|.+++|.++|++....- .++.-|..+.++|++-.. ++-...
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 367777777888888888888877766542 345556666666653211 011112
Q ss_pred HHHHHHHCCC-----------CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH------HHHHHHHHHHHHc
Q 011226 180 IIQEMKASSI-----------MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW------TTFSNLASIYVEA 242 (490)
Q Consensus 180 ~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~ 242 (490)
-|+.+...+. +-++.+|..- .-+..|+..+-...|.++.+. +.|.. ..|..+...|-..
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhc
Confidence 2222222110 0011111111 112245566666666666665 44422 2356667777777
Q ss_pred CCHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC-----------------chhH
Q 011226 243 GLFEKAERALKELENRNAHRD---LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA-----------------NISY 302 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~ 302 (490)
|+++.|..+|++..+...+-- ..+|-.....=.+..+++.|+++++.....-..|. ...|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 777777777777665433211 23344444444556666666666665543211110 1123
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLR 381 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 381 (490)
...++.--..|-++....+++.+.+..+. ++.+.......+-...-++++.+++++-+..=.-|+. ..|+..+..+.+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 33344444456666666666666655443 3333333333344555666777776665543222333 345555554432
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCCCCCcCCH-H-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHhHHHHHHHH
Q 011226 382 ---NGDMKLAVDCLEKAIDTGRGDGGKWVPSS-E-TIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-LGVEVFEPLIRTY 455 (490)
Q Consensus 382 ---~g~~~~A~~~~~~~~~~~~~~~~~~~p~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 455 (490)
....+.|..+|+++++.. .|.. . .|-.....-.+.|-...|+.+++++...-.. .-...||.+|.--
T Consensus 560 rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 235677777777777743 1321 1 1112222223456677777777776554331 1233444444433
Q ss_pred Hhc-CC-CcHHHHHHHhhCCCCCCHHHHHHH
Q 011226 456 AAA-GR-TSPVMLRRLKMEKVEVSEASKKLL 484 (490)
Q Consensus 456 ~~~-g~-~~~~~~~~m~~~~~~p~~~~~~~l 484 (490)
... |- ....+++.-.+. -||.......
T Consensus 633 ae~yGv~~TR~iYekaIe~--Lp~~~~r~mc 661 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIES--LPDSKAREMC 661 (835)
T ss_pred HHHhCCcccHHHHHHHHHh--CChHHHHHHH
Confidence 222 22 333444443322 4555554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-09 Score=99.69 Aligned_cols=245 Identities=17% Similarity=0.136 Sum_probs=178.4
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----cC-
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRD-----GRVAADWTT-FSNLASIYVEAGLFEKAERALKELENR-----NA- 260 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~- 260 (490)
..++..+...|...|+++.|+.+++...+. |...|...+ .+.+...|...+++++|..+|+++..- |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888999999999999999887764 222344443 345788899999999999999988652 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-----CC-CCCch-hHHHHHHHHHhcCChhhHHHHHHHHHhc---C
Q 011226 261 HR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-----FP-NTANI-SYLNMIQVLVNLKDLPGAEKCFKEWESG---C 329 (490)
Q Consensus 261 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 329 (490)
.| -..+++.|..+|.+.|++++|...++...+. +. .|... .++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 2456777888899999999998888765432 11 12222 3566778888999999999998875431 1
Q ss_pred CCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 330 ATY----DIRVTNVMIGAYAKEGRLENAEELKERARRR----GA--DP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 330 ~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
+.+ -..+++.|...|...|++++|.++++.++.. +- .+ ....++.+...|.+.+++.+|..+|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2467899999999999999999999998753 11 11 2346677888899999999999999887655
Q ss_pred CCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 399 GRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 399 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
. +.-+.-.|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 111112344 67899999999999999999999988764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.5e-12 Score=77.25 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=43.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 332 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 332 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-09 Score=96.36 Aligned_cols=302 Identities=20% Similarity=0.214 Sum_probs=201.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHH-HHHH----HHHHhC--CCCCCcchHHHHH
Q 011226 93 QAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKA-EALL----EKMKEL--NLGFSSMPFNSLM 165 (490)
Q Consensus 93 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~----~~~~~~--~~~~~~~~~~~l~ 165 (490)
+...-..++..+.+++|...++..... ..+..|...+...-+.+.. ...+ -.+... +.+.-..+...+.
T Consensus 131 ~hl~~~~~~~~~~l~ea~~~~e~~~~~----~~~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La 206 (508)
T KOG1840|consen 131 LHLLAAIQALLLQLDEAEQGQEQAAVT----PVKDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLA 206 (508)
T ss_pred HHHHHHHHHHHHHhhhhhccccccccc----chhHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHH
Confidence 333444445566677777777666541 1133343333222221111 1111 111122 2222234556688
Q ss_pred HHHHhcCCCCcHHHHHHHHHHC-----CC-CCCHhh-HHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCC-CHHHH
Q 011226 166 TLYAKTGHPEKIPAIIQEMKAS-----SI-MPDSYT-YNVWMRALAAVNDISGAERVIEEMKRD-----GRVAA-DWTTF 232 (490)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~ 232 (490)
..|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |...| -..++
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8999999999999999988764 21 233333 344777899999999999999998763 32333 34567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-----cC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHh---CCCCCc---
Q 011226 233 SNLASIYVEAGLFEKAERALKELENR-----NA-HRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLA---FPNTAN--- 299 (490)
Q Consensus 233 ~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~--- 299 (490)
+.|...|.+.|++++|...++...+- |. .|. ...++.+...++..+++++|..++....+. -+.++.
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 88889999999999999888876431 11 122 234566777889999999999998866432 122222
Q ss_pred -hhHHHHHHHHHhcCChhhHHHHHHHHHhcC----C--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC-
Q 011226 300 -ISYLNMIQVLVNLKDLPGAEKCFKEWESGC----A--TY-DIRVTNVMIGAYAKEGRLENAEELKERARR----RGAD- 366 (490)
Q Consensus 300 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~- 366 (490)
.+++.+...|...|++++|.++++.+.... . .+ ....++.|...|.+.+++.+|.++|.+... .|+.
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999975421 1 11 234667888999999999999999987653 3332
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 367 PN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 367 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
|+ ..+|..|...|...|+++.|+++.+.....
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 23 357889999999999999999998887743
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-07 Score=83.41 Aligned_cols=369 Identities=12% Similarity=0.055 Sum_probs=240.3
Q ss_pred CHHhHHHHHHH-HhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCC-CHhHHHHHHH
Q 011226 54 FKWEVGDTLKK-LRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSK-NHLTYGSLLN 131 (490)
Q Consensus 54 ~~~~~~~ll~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~ 131 (490)
-+....+++.. +...+++++|+..|......+ +.|...+..+.-.-++.|+++........+.+..| ....|..++.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAV 151 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34444444444 445688999999999998887 45777787777777788999888888777777334 4567888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCCcchHHHHHH------HHHhcCCCCcHHHHHHHHHHCCCCCCHhh-HHHHHHHH
Q 011226 132 CYCKELMTEKAEALLEKMKELN-LGFSSMPFNSLMT------LYAKTGHPEKIPAIIQEMKASSIMPDSYT-YNVWMRAL 203 (490)
Q Consensus 132 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~ 203 (490)
++.-.|+...|..++++..+.. -.|+...|..... ...+.|..++|++.+..-... +. |... -..-...+
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHH
Confidence 9999999999999999988754 2466666643332 344577778888777655432 21 2222 23445678
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHccCCCCHHHHH-HHHHHHHhcCChh
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE-RALKELENRNAHRDLSAYQ-FLITLYGQTGNLS 281 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 281 (490)
.+.+++++|..++..++.. .|.+...|..+..++.+..+.-++. .+|....+. + |....-. .=++......-.+
T Consensus 230 ~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhCcchhHH
Confidence 8999999999999999997 6666666666777776444444444 666655442 1 1111111 1111111122223
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH----hcC----------CCCChhhH--HHHHHHHH
Q 011226 282 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE----SGC----------ATYDIRVT--NVMIGAYA 345 (490)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~li~~~~ 345 (490)
..-.++..+.+.|+. .++..+...|-.....+-..++...+. ..+ ..|....| -.++..+-
T Consensus 306 ~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred HHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 344455566666654 344445544433222221222222211 111 13444444 45778888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 346 KEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
..|+++.|...++....+ .|+. ..|..-.+.+.+.|++++|..++++..+... +|...-..-..-..+.+
T Consensus 383 ~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-------aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-------ADRAINSKCAKYMLRAN 453 (700)
T ss_pred HcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHcc
Confidence 999999999999999875 4554 3455556788999999999999999998863 66666556667778899
Q ss_pred ChHHHHHHHHHHHHcCC
Q 011226 425 DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~ 441 (490)
+.++|.++.....+.|.
T Consensus 454 ~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccHHHHHHHHHhhhccc
Confidence 99999999998887664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-08 Score=81.00 Aligned_cols=200 Identities=13% Similarity=0.007 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
+...|.-.|...|+...|..-+++.++. .|.+..+|..+...|.+.|+.+.|.+.|++.....+ -+..+.|...-.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHH
Confidence 3455677888999999999999999987 778888888999999999999999999998887543 3566777777788
Q ss_pred HhcCChhHHHHHHHHHHHhCC-CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 011226 275 GQTGNLSEVYRIWRSLRLAFP-NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 353 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (490)
|..|++++|...|++....-. .-...+|..+.-+..+.|+.+.|...|++..+..+. .......+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 889999999999998876522 112457888888888999999999999998887666 555667788888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
...++.....+. ++..+.-..|+.-...|+.+.+-++=.++.+.-
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999998887765 788888788888888899888888877777765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-07 Score=85.28 Aligned_cols=237 Identities=15% Similarity=0.106 Sum_probs=147.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH-----
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI----- 271 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~----- 271 (490)
..+.++..+..+++.|++.+...... . .+..-++....+|...|.+.+....-+...+.|.. ...-|+.+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el--~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALEL--A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhH--h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 34555556666666666666666664 2 44445556666666666666666655555444431 122222222
Q ss_pred --HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 011226 272 --TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 349 (490)
Q Consensus 272 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (490)
.+|.+.++++.++..|.+.......|+. ..+....+++........-.++..-... ..-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~-r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEE-REKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHH-HHHHHHHHhccC
Confidence 2344455666666666665443333221 1122233344433333332222211111 122556778899
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHH
Q 011226 350 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDG 428 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 428 (490)
+..|+..|.++++.++ -|...|..-.-+|.+.|.+..|++-.+..++.. |+ ...|.-=..++....+++.
T Consensus 374 y~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--------p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELD--------PNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998763 377888888899999999999999988888886 54 5566655667777788999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 429 AEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
|.+.|++.++.+| .+......+.+++..
T Consensus 445 Aleay~eale~dp-~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 445 ALEAYQEALELDP-SNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHhcCc-hhHHHHHHHHHHHHH
Confidence 9999999999987 676666666666654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-08 Score=90.90 Aligned_cols=232 Identities=13% Similarity=0.081 Sum_probs=124.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
..+.++.-+.+++......|+ ...|..+...|...|++++|...|++..+..+ .+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555556556543211121 33455666666677777777777766666433 345666666667777777777777
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
.|+...+..+. +...+..+..++...|++++|.+.++...+..+. +. ........+...++.++|...|.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77776664433 3345555666666677777777777776665443 22 11111122334556777777775544321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011226 366 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG 444 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 444 (490)
.|+...+ .......|+...+ ..++.+.+.... .....| ....|..+...+.+.|++++|...|+++.+.+| +|
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~-~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~ 269 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATD-NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YN 269 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ch
Confidence 2222111 1222234444333 233333322100 000112 235677777778888888888888888887776 45
Q ss_pred HHhHHH
Q 011226 445 VEVFEP 450 (490)
Q Consensus 445 ~~~~~~ 450 (490)
..-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-07 Score=86.27 Aligned_cols=377 Identities=12% Similarity=0.009 Sum_probs=257.4
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCC---CCCHhHHHH
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET---SKNHLTYGS 128 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~ 128 (490)
.-++..|..+.-++...|++..+.+.|+.....-+ .....|+.+.-.+...|.-..|..+++..... +++...+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 34677788888888999999999999999876653 45667888888899999999999999887763 334444444
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHhC--CC--CCCcchHHHHHHHHHhcC-----------CCCcHHHHHHHHHHCC-CCC
Q 011226 129 LLNCYCK-ELMTEKAEALLEKMKEL--NL--GFSSMPFNSLMTLYAKTG-----------HPEKIPAIIQEMKASS-IMP 191 (490)
Q Consensus 129 li~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~-~~p 191 (490)
.-..|.+ .+.++++++.-.+.... +. ......|..+.-+|...- ...++++.+++..+.+ -.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4444544 36777777766666551 11 123345555555554321 1346778888887654 234
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC----------
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH---------- 261 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------- 261 (490)
+...| +.--|+..++++.|.+..++..+.+ ...+...|..|+-.+...+++.+|+.+.+.....-..
T Consensus 479 ~~if~--lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFY--LALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred hHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 33333 3445678889999999999999986 6778888999999999999999999998876553111
Q ss_pred ---------CCHHHHHHHHHHHHh-----------------------cCChhHHHHHHHHHH--------HhC-------
Q 011226 262 ---------RDLSAYQFLITLYGQ-----------------------TGNLSEVYRIWRSLR--------LAF------- 294 (490)
Q Consensus 262 ---------~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~------- 294 (490)
-...|...++...-. .++..++.+..+.+. ..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001122222221110 011112222111110 001
Q ss_pred ----CCCCc------hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 295 ----PNTAN------ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 295 ----~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
+.|+. ..|......+.+.++.++|...+.+.....+. ....|......+...|+.++|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 01111 12334556677788888888888777766443 66777777788888999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 365 ADPNAKTWEIFSDYYLRNGDMKLAVD--CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+. +..+..++...+.+.|+..-|.. ++.++.+.+. .+...|..+...+.+.|+.+.|.+.|....++..
T Consensus 715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-------~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-------LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 22 45677888999999998888887 9999999982 4699999999999999999999999999998776
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.6e-09 Score=82.40 Aligned_cols=193 Identities=15% Similarity=0.042 Sum_probs=99.4
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP 174 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (490)
+.-.|...|+...|..-+++..+..|+ ..+|..+...|.+.|+.+.|.+.|++...... .+..+.|..-..+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCCh
Confidence 333444555555555555555542222 33455555555555555555555555555432 3344555555555555555
Q ss_pred CcHHHHHHHHHHCCC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 175 EKIPAIIQEMKASSI-MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK 253 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 253 (490)
++|...|++....-. .--..+|..+.-|..+.|+.+.|...|++..+. .+....+...+.....+.|++-.|..+++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544311 112234555555555556666666666555554 34444444555555555666666665555
Q ss_pred HHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 254 ELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
.....+. ++..+.-..|+.--..|+.+.+-+.=..+..
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555444 5555555555555555555555554444444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-07 Score=81.82 Aligned_cols=386 Identities=12% Similarity=0.107 Sum_probs=221.1
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhH-HHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011226 24 ALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEV-GDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAK 102 (490)
Q Consensus 24 ~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (490)
.+...+..+. ....+...+......+.......+ ..-+....+.+..++|+..++.+.+ .+..+...-...+.+
T Consensus 48 a~~cKvValI-q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYr 122 (652)
T KOG2376|consen 48 AIRCKVVALI-QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYR 122 (652)
T ss_pred hHhhhHhhhh-hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHH
Confidence 4444444433 455667777443333322222222 2334445578999999999983321 234466667788999
Q ss_pred hCCHHHHHHHHhhcCC-CCCCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHH---HHHhcCCCCc
Q 011226 103 VQGIDAAENYFVDLPE-TSKNHL--TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMT---LYAKTGHPEK 176 (490)
Q Consensus 103 ~g~~~~a~~~~~~~~~-~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~ 176 (490)
.|++++|..+|+.+.+ ..++.. .-..++.+- .+... +.+......| ..+|..+-+ .++..|++.+
T Consensus 123 l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~q 193 (652)
T KOG2376|consen 123 LERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQ 193 (652)
T ss_pred HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHH
Confidence 9999999999999966 222211 111222111 11111 1122222223 345554443 4566888999
Q ss_pred HHHHHHHHHHCC-------------CCCCHh-hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHH----HHHHHH
Q 011226 177 IPAIIQEMKASS-------------IMPDSY-TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF----SNLASI 238 (490)
Q Consensus 177 a~~~~~~~~~~~-------------~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~ 238 (490)
|++++....+.+ +.-+.. .-..+.-++-..|+-++|..++...++. .++|.... |.|+..
T Consensus 194 A~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 194 AIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhh
Confidence 999988873221 111111 1234555677889999999999888887 45554322 222211
Q ss_pred HHHcCCHH-HHHHHHHH----------------------------------------HHHc--cCCCCHHHHHHHHHHHH
Q 011226 239 YVEAGLFE-KAERALKE----------------------------------------LENR--NAHRDLSAYQFLITLYG 275 (490)
Q Consensus 239 ~~~~~~~~-~A~~~~~~----------------------------------------~~~~--~~~~~~~~~~~l~~~~~ 275 (490)
-....-++ .++..++. .... +..|. ..+..++..+.
T Consensus 272 ~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t 350 (652)
T KOG2376|consen 272 SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEAT 350 (652)
T ss_pred ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHH
Confidence 11110001 00000000 0000 11122 23333333322
Q ss_pred h--cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHH--------HHHhcCCCCChhhHHHHHHHHH
Q 011226 276 Q--TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK--------EWESGCATYDIRVTNVMIGAYA 345 (490)
Q Consensus 276 ~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~ 345 (490)
+ .....++.+++...-+..+.-...+....+......|+++.|.+++. .+.+.+.. +.+...+...+.
T Consensus 351 ~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~ 428 (652)
T KOG2376|consen 351 KVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYY 428 (652)
T ss_pred HHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHH
Confidence 2 22456677777766655544334456677788889999999999999 55554444 455667778888
Q ss_pred hcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH
Q 011226 346 KEGRLENAEELKERARRR--GADPNAKTWEIFSD----YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 419 (490)
+.++.+.|..++.+.... .-.+.......++. .-.+.|+-++|..+++++.+.. .+|..+...++.+
T Consensus 429 ~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-------~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 429 KIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-------PNDTDLLVQLVTA 501 (652)
T ss_pred hccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-------CchHHHHHHHHHH
Confidence 989888888888887642 11223333333333 3357799999999999999975 2789999999999
Q ss_pred HHhcCChHHHHHHHHHH
Q 011226 420 FEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~ 436 (490)
|++. +++.|..+-+.+
T Consensus 502 ~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 502 YARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhc-CHHHHHHHhhcC
Confidence 9876 577787765553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-07 Score=87.21 Aligned_cols=302 Identities=13% Similarity=0.023 Sum_probs=174.6
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCC-CC--CCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPE-TS--KNHL-TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTL 167 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 167 (490)
.|..+...+...|+.+.+.+.+..... .+ .+.. ........+...|++++|.+++++..+..+ .+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHH
Confidence 344444455555666665555554433 11 1211 122223345667888888888888877642 23333332 222
Q ss_pred HHh----cCCCCcHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHc
Q 011226 168 YAK----TGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA 242 (490)
Q Consensus 168 ~~~----~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (490)
+.. .+..+.+.+.+.. .....|+ ......+..++...|++++|...+++..+. .+.+...+..+...+...
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHc
Confidence 333 3334444444433 1112233 234445566788899999999999999886 566677788888999999
Q ss_pred CCHHHHHHHHHHHHHccCC-CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch-hH-H--HHHHHHHhcCCh
Q 011226 243 GLFEKAERALKELENRNAH-RDL--SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-SY-L--NMIQVLVNLKDL 315 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~--~l~~~~~~~~~~ 315 (490)
|++++|...+++....... ++. ..|..+...+...|++++|..++++.....+.+... .. + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999887764321 222 345567788889999999999999875433211111 11 1 223333444544
Q ss_pred hhHHHH--H-HHHHhcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--C-H---HHHHHHH--HHHHhcC
Q 011226 316 PGAEKC--F-KEWESGCA-TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP--N-A---KTWEIFS--DYYLRNG 383 (490)
Q Consensus 316 ~~a~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~-~---~~~~~l~--~~~~~~g 383 (490)
+.+.+. + ........ ............++...|+.+.|..+++.+......+ . . .+-..++ .++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 433333 1 11111111 1111222356667788899999999999987632210 1 1 1111222 3456889
Q ss_pred CHHHHHHHHHHHHhcC
Q 011226 384 DMKLAVDCLEKAIDTG 399 (490)
Q Consensus 384 ~~~~A~~~~~~~~~~~ 399 (490)
+.++|.+.+...+...
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998887664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-07 Score=79.28 Aligned_cols=299 Identities=10% Similarity=0.015 Sum_probs=212.9
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSL 129 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 129 (490)
|.......+..++..+.+..++..|++++..-.+.. +.+......+..+|....++..|-..++++....|...-|..-
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 444555667788888888999999999998887776 2377778888899999999999999999998866766655432
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH--HHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 130 -LNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTL--YAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 130 -i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
...+-+.+.+..|+++...|... |+...-..-+.+ ....+++..+..++++....| +..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 45667789999999999888764 222222222222 235788899999998876543 555555666667899
Q ss_pred CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-------------CCH---------
Q 011226 207 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-------------RDL--------- 264 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~--------- 264 (490)
|+++.|.+-|+...+-++..|- ..|+ +.-+..+.|+++.|++...++.++|++ ||+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpl-lAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPL-LAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCch-hHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 9999999999999988745554 4555 445566789999999999999988764 121
Q ss_pred ------HHHHHHHHHHHhcCChhHHHHHHHHHHH-hCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 011226 265 ------SAYQFLITLYGQTGNLSEVYRIWRSLRL-AFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT 337 (490)
Q Consensus 265 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (490)
..+|.-...+.+.|+++.|.+.+-.|.- .....|++|...+.-.- -.+++....+-+.-+....+- ...+|
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHH
Confidence 2233334456678888988888887742 12244667765443222 234555555556666666664 45788
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 011226 338 NVMIGAYAKEGRLENAEELKER 359 (490)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~ 359 (490)
..++-.||+..-++.|-.++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhh
Confidence 8888899999999999888765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-08 Score=87.75 Aligned_cols=226 Identities=12% Similarity=0.010 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHhCCC-CC--CcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHH
Q 011226 137 LMTEKAEALLEKMKELNL-GF--SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAE 213 (490)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 213 (490)
+..+.++.-+.+++.... .| ....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345566666666664321 11 13446666667777788888888777777753 224667777777888888888888
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011226 214 RVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (490)
..|+...+. .+.+..++..+...+...|++++|.+.|+...+.. |+..........+...++.++|...|......
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 888888775 45566677777777778888888888888777643 33221222222334566778888887654432
Q ss_pred CCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc---CCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 294 FPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG---CAT---YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
. .++... . .......|+...+ +.+..+.+. .+. .....|..+...+...|++++|...|++..+.++ |
T Consensus 195 ~-~~~~~~-~--~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~ 268 (296)
T PRK11189 195 L-DKEQWG-W--NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-Y 268 (296)
T ss_pred C-CccccH-H--HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-c
Confidence 2 222211 1 2222335555444 244443321 110 1235677888888888888888888888887532 3
Q ss_pred CHHHHH
Q 011226 368 NAKTWE 373 (490)
Q Consensus 368 ~~~~~~ 373 (490)
|..-+.
T Consensus 269 ~~~e~~ 274 (296)
T PRK11189 269 NFVEHR 274 (296)
T ss_pred hHHHHH
Confidence 444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-07 Score=84.68 Aligned_cols=311 Identities=12% Similarity=-0.013 Sum_probs=193.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchH---HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHH
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPF---NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 199 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 199 (490)
...|..+...+...|+.+.+.+.+....+... ++...+ ......+...|++++|.+++++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 44666777777778888888777777665432 222222 222335667899999999999988763 223334332
Q ss_pred HHHHHH----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 200 MRALAA----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 200 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
...+.. .+..+.+.+.+...... .+........+...+...|++++|...+++..+... .+...+..+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPE--NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence 222222 45555565555552121 344455556777889999999999999999998653 45677888899999
Q ss_pred hcCChhHHHHHHHHHHHhCCC-CCc--hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhH-H--HHHHHHHhcC
Q 011226 276 QTGNLSEVYRIWRSLRLAFPN-TAN--ISYLNMIQVLVNLKDLPGAEKCFKEWESGCA-TYDIRVT-N--VMIGAYAKEG 348 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~ 348 (490)
..|++++|...+++.....+. ++. ..|..+...+...|++++|..+++......+ .+..... + .++..+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 999999999999998775432 222 2345678889999999999999999864433 1112111 1 2233334445
Q ss_pred ChhHHHHH--HHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CCC-cCCHHHHHHHHHHHHh
Q 011226 349 RLENAEEL--KERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG-GKW-VPSSETIRTFMRHFEQ 422 (490)
Q Consensus 349 ~~~~a~~~--~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-~p~~~~~~~l~~~~~~ 422 (490)
....+..+ +.......... ..........++...|+.+.|..+++.+.......+ ... ............++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 44433333 21111111111 112223456677899999999999999877542100 000 0112223333445678
Q ss_pred cCChHHHHHHHHHHHHc
Q 011226 423 EKDVDGAEGFLEILKKA 439 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~~~ 439 (490)
.|+.++|.+.+...+..
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-06 Score=72.35 Aligned_cols=301 Identities=12% Similarity=-0.012 Sum_probs=185.0
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhH-HHHHH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTV-SDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLT-YGSLL 130 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~li 130 (490)
.+...-..+-+.+..+|++..|+.-|....+.+ |+. .++-.-...|...|+...|+.=++...+.+||-.. --.-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 334444556677888999999999999887665 332 23333456777889989998888888887777432 22233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCcch----H------------HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHh
Q 011226 131 NCYCKELMTEKAEALLEKMKELNLGFSSMP----F------------NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY 194 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 194 (490)
..+.++|.++.|..=|+..++.. |+..+ + ...+..+...|+...|+.....+.+.. +-|..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 56788999999999999998865 32211 1 122333445677777777777777642 33666
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH----HHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY----QFL 270 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~l 270 (490)
.+..-..+|...|++..|+.=++...+. ...+..++-.+-..+...|+.+.++..+++..+. .||.-.+ ..+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 6666667777777777777777666665 3445555555666677777777777777766653 3443211 111
Q ss_pred ---------HHHHHhcCChhHHHHHHHHHHHhCCCCCchh---HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH
Q 011226 271 ---------ITLYGQTGNLSEVYRIWRSLRLAFPNTANIS---YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN 338 (490)
Q Consensus 271 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (490)
+......++|.++++..+...+..+....+. +..+-.++...+++.+|++...++.+..+. |+.++.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHH
Confidence 1122344556666666665555444322222 233444555566666666666666654433 455555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 339 VMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
--..+|.-...++.|+.-|+...+.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5566666666666666666666653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-06 Score=91.88 Aligned_cols=341 Identities=11% Similarity=0.013 Sum_probs=216.5
Q ss_pred HHHhhCCHHHHHHHHhhcCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------CCc--chHHHHHHHH
Q 011226 99 LVAKVQGIDAAENYFVDLPE--TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLG------FSS--MPFNSLMTLY 168 (490)
Q Consensus 99 ~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~ 168 (490)
.+...|+++.+..+++.++. ...+..........+...|+++++..++......--. +.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456888888888887754 1122223334445556789999999999877543110 111 1112233445
Q ss_pred HhcCCCCcHHHHHHHHHHCCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHH
Q 011226 169 AKTGHPEKIPAIIQEMKASSIMPDS----YTYNVWMRALAAVNDISGAERVIEEMKRDG----RVAADWTTFSNLASIYV 240 (490)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~ 240 (490)
...|++++|...+++..+.-...+. ...+.+...+...|+++.|...+++..... .......++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111121 234556667788999999999998887532 01112234566777888
Q ss_pred HcCCHHHHHHHHHHHHHc----cCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCC--CC--CchhHHHHHHHH
Q 011226 241 EAGLFEKAERALKELENR----NAH--R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP--NT--ANISYLNMIQVL 309 (490)
Q Consensus 241 ~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~--~~~~~~~l~~~~ 309 (490)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+...... .+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876542 211 1 123345566677788999999999987754311 11 122344466677
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCC-hhhH-----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYD-IRVT-----NVMIGAYAKEGRLENAEELKERARRRGADPNA---KTWEIFSDYYL 380 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~ 380 (490)
...|+.+.|...+........... ...+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 889999999999888754211111 1111 11224455688999999998775542111111 11345666788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 381 RNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..|++++|...+++........ + ..++ ..+...+..++...|+.++|...+.++.+...
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 9999999999999887652100 0 1122 34667777889999999999999999988655
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.4e-07 Score=75.96 Aligned_cols=194 Identities=13% Similarity=0.033 Sum_probs=108.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHH---HHHHhcCCCCcHHHHHHHHHHCCCCCCHhhH-HH
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLM---TLYAKTGHPEKIPAIIQEMKASSIMPDSYTY-NV 198 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~ 198 (490)
+.-.--+-..+...|++..|+.-|....+. |+..|.++. ..|...|+..-|+.=+...++ ++||-..- ..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHH
Confidence 344455667777888888999888888874 344455443 467778888888888888877 46664221 12
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHH----HHH------------HHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWT----TFS------------NLASIYVEAGLFEKAERALKELENRNAHR 262 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 262 (490)
-...+.+.|.++.|..=|+.+++.. |+.. .+. ..+..+...|+...|+..+..+.+-.+ .
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~---~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-W 187 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE---PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-W 187 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC---CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-c
Confidence 2346778889999999998888863 3221 111 112223334555555555555544222 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 263 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
|...|..-..+|...|++..|+.=++...+..-. +..++..+-..+...|+.+.+....++..+
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 4444555555555555555555444444332211 222333344444455555555555555444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-05 Score=73.09 Aligned_cols=208 Identities=13% Similarity=0.069 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHH
Q 011226 245 FEKAERALKELENRNAHRDLSAYQFLITLYGQTG---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 321 (490)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (490)
.+++..+++.....-...+..+|..+.+.--..- ..+....+++++......--..+|..+++...+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666554333334444444433222222 2556666777666543322345788889988899999999999
Q ss_pred HHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011226 322 FKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 400 (490)
Q Consensus 322 ~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 400 (490)
|.+..+.+..+ ++.+.++++..||. ++.+-|..+|+--.+. ...+..--...+.-+...++-..+..+|++.+..+.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99998877666 77888888887775 7889999999987764 222334445677788899999999999999999863
Q ss_pred CCCCCCcCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCC
Q 011226 401 GDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD---DLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 401 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 460 (490)
.|+ ..+|..++.--..-|+...+.++-+++...-+ .+....-..+++-|.-.+.
T Consensus 467 ------~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 467 ------SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred ------ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 244 68999999999999999999998888766433 1222233445555555555
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-06 Score=79.30 Aligned_cols=394 Identities=11% Similarity=0.018 Sum_probs=244.2
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCCHHH
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELMTEK 141 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 141 (490)
...+..|+++.|+..|-+.+... +++...|..-..+|+..|++++|.+=-.+-....|+ ...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34567899999999999998887 458888888899999999999998887777776666 5689999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcH---HHHHHHHHHC---CCCCCHhhHHHHHHHHHHc-------CC
Q 011226 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKI---PAIIQEMKAS---SIMPDSYTYNVWMRALAAV-------ND 208 (490)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~-------~~ 208 (490)
|+.-|.+-++... -+...++.+..++.......+. -.++...... ........|..++...-+. .+
T Consensus 89 A~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9999999888753 4556667777766221100000 0011111000 0000001122222111110 00
Q ss_pred hhHHHHHHHHHH--------HCC------CCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 011226 209 ISGAERVIEEMK--------RDG------RVAA----------------------DWTTFSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 209 ~~~a~~~~~~~~--------~~~------~~~~----------------------~~~~~~~l~~~~~~~~~~~~A~~~~ 252 (490)
.+...+..-.+. ..| ...| -..-...+.+...+..+++.|.+.+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111110000 000 0011 0112345667777777888888888
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhH-------HHHHHHHHhcCChhhHHHHHHHH
Q 011226 253 KELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY-------LNMIQVLVNLKDLPGAEKCFKEW 325 (490)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~ 325 (490)
....... -+..-++....+|...|.+.++...-....+.|-. ...-| ..+..+|.+.++++.+...|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 8877654 45555666667777777777666655554444321 11122 22334566677788888888876
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 011226 326 ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG 404 (490)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 404 (490)
....-.|+. ..+....+++....+...-. .|.. .-...-...+.+.|++..|+..|.++++..
T Consensus 325 Lte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~----- 388 (539)
T KOG0548|consen 325 LTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD----- 388 (539)
T ss_pred hhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----
Confidence 554333321 22333445555555544433 2332 112222556789999999999999999987
Q ss_pred CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 405 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 405 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
+-|...|....-+|.+.|.+..|++-.+..++++| +....|..=..++....++..++-..-+.....|+..-
T Consensus 389 --P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 389 --PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred --CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 14588899999999999999999999999999998 78888877777777777776666555444444454443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-08 Score=88.62 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=71.9
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcC
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL----RNG 383 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g 383 (490)
.+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. -..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCch
Confidence 344456666666555431 24455555566666666666666666666553 2232 2223333322 122
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCC
Q 011226 384 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (490)
.+.+|..+|+++.+. +.+++.+.+.+..++...|++++|.+++++..+.++ .++.+...++-+....|+.
T Consensus 182 ~~~~A~y~f~El~~~-------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCCHHHHHHHHHHCC-------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-T
T ss_pred hHHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCC
Confidence 466666666665554 225566666666666666666666666666666555 5555666666666666665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-09 Score=91.25 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh-hHHHHHH
Q 011226 279 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL-ENAEELK 357 (490)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~ 357 (490)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+....++. ++.+...++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 344455555544332 2233344444444444455555555554444443333 333444444444444444 3344444
Q ss_pred HHHHH
Q 011226 358 ERARR 362 (490)
Q Consensus 358 ~~~~~ 362 (490)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-07 Score=86.22 Aligned_cols=247 Identities=14% Similarity=0.091 Sum_probs=190.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 280 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (490)
.-+.+.|++.+|.-.|+..++. .|-+...|..|.......++-..|+..+.+..+..+ -+....-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhH
Confidence 3457889999999999999997 788999999999999999999999999999988543 3577788888899999999
Q ss_pred hHHHHHHHHHHHhCCCC--------CchhHHHHHHHHHhcCChhhHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCChh
Q 011226 281 SEVYRIWRSLRLAFPNT--------ANISYLNMIQVLVNLKDLPGAEKCFKEWE-SGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
..|++.++.-+...++- +...-.. ..+.....+....++|-++. ..+..+|+.+...|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99999999876554210 0000000 11112222334455555554 4454578889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 430 (490)
.|.+.|+.++...+. |...||-|...++...+.++|+..|.++++.. |. +.+...|.-+|...|.+++|.
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHH
Confidence 999999999985332 56789999999999999999999999999986 77 567777888999999999999
Q ss_pred HHHHHHHHcCC---------CCCHHhHHHHHHHHHhcCCC
Q 011226 431 GFLEILKKAVD---------DLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 431 ~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~ 461 (490)
+.|=.++.... .++-.+|..|=.++.-.++.
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 98888776322 12346788777777766663
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.5e-06 Score=79.26 Aligned_cols=246 Identities=14% Similarity=0.127 Sum_probs=117.7
Q ss_pred HHHHHHHHHhcC--CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhhCCHHHHHHHHhh
Q 011226 40 RQQLNQFLKSKK--RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRG--MNKTVSDQAIHLDLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 40 ~~~l~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 115 (490)
.++++..+..+. .-++..+...++++...+-+.+-+++++++.-.+ +.-+....+.++-...+ -+.....+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHH
Confidence 334455544443 3567788888999999999999999999985432 11222233333333222 344555566666
Q ss_pred cCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHh
Q 011226 116 LPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY 194 (490)
Q Consensus 116 ~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 194 (490)
+.. ..|+ +.......+-+++|..+|+..- .+....+.|+.- -+..+.|.++-++.. .+.
T Consensus 1046 LdnyDa~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~ 1105 (1666)
T KOG0985|consen 1046 LDNYDAPD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPA 1105 (1666)
T ss_pred hccCCchh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChH
Confidence 555 2222 2223334455566666655432 123333333332 233344444333221 233
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
.|..+..+-.+.|.+.+|++.|-+. .|+..|..++....+.|.|++-.+++....+....|.. =+.||-+|
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHH
Confidence 4555555555555555544443221 23334445555555555555555555444443333332 22344455
Q ss_pred HhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 011226 275 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF 322 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (490)
++.++..+..+++ ..|+......+.+-|...|.++.|.-+|
T Consensus 1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 5555444433322 1234444444444444444444444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-07 Score=84.99 Aligned_cols=256 Identities=14% Similarity=0.086 Sum_probs=194.5
Q ss_pred HHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHH
Q 011226 167 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE 246 (490)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (490)
-+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+. .+.+..+...|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 3567899999999999988875 236778888888999999999999999999997 7888899999999999999999
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHH-----------HHHHhcCChhHHHHHHHHHHHh-CCCCCchhHHHHHHHHHhcCC
Q 011226 247 KAERALKELENRNAHRDLSAYQFLI-----------TLYGQTGNLSEVYRIWRSLRLA-FPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 314 (490)
.|++.++......++ |..+. .............++|-++... +..+|......|.-.|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999988664321 11110 1111222234455566555444 434677788888888999999
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 011226 315 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLE 393 (490)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 393 (490)
+++|.+.|+......+. |..+||.|...++...+.++|+.-|.+.++. +|+- .+...|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999998777 8999999999999999999999999999984 5654 355566778999999999999988
Q ss_pred HHHhcCCC---CCCCCcCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011226 394 KAIDTGRG---DGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 433 (490)
Q Consensus 394 ~~~~~~~~---~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 433 (490)
.++..... +.....++..+|..|=.++.-.++.+.+.+..
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 77655311 11112234567877777777777777555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.4e-06 Score=85.89 Aligned_cols=330 Identities=15% Similarity=0.030 Sum_probs=205.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC--C----CCCH--hhHHHHHHHH
Q 011226 132 CYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS--I----MPDS--YTYNVWMRAL 203 (490)
Q Consensus 132 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~p~~--~~~~~l~~~~ 203 (490)
.....|+++.+..+++.+.......+..........+...|+++++..++....+.- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 345567777777777665321111223333444555667899999999998775431 0 1111 1222233456
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC---C--CHHHHHHHHHHH
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKAERALKELENRNAH---R--DLSAYQFLITLY 274 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~ 274 (490)
...|+++.|...+++....- ...+. ...+.+...+...|++++|...+++....... + ...++..+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 78999999999999987631 11121 23456677788899999999999887642111 1 123455567778
Q ss_pred HhcCChhHHHHHHHHHHHh----CCC--C-CchhHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCCChhhHHHHHHH
Q 011226 275 GQTGNLSEVYRIWRSLRLA----FPN--T-ANISYLNMIQVLVNLKDLPGAEKCFKEWESG----CATYDIRVTNVMIGA 343 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~ 343 (490)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999998876542 211 1 1223445556677789999999998886542 211123344556677
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHH
Q 011226 344 YAKEGRLENAEELKERARRRGAD-PNAKTW-----EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 417 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 417 (490)
+...|+.+.|...+......... .....+ ...+..+...|+.+.|..++......... . .......+..+.
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~--~-~~~~~~~~~~~a 698 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA--N-NHFLQGQWRNIA 698 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc--c-chhHHHHHHHHH
Confidence 88899999999999888642111 111111 11223445688999999998775543210 0 000112245677
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCCcHHH
Q 011226 418 RHFEQEKDVDGAEGFLEILKKA----VDD-LGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
.++...|++++|...++++... +.. ....+...+..++...|+..++.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7888999999999999998764 221 12456778888899999955543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-06 Score=74.30 Aligned_cols=224 Identities=9% Similarity=0.025 Sum_probs=108.4
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh--h
Q 011226 205 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL--S 281 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 281 (490)
..+..++|+.+..++++. .+-+..+|+....++...| ++++++..++++..... .+..+|+.....+.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 344455555555555554 3444444444444444444 34555555555554333 2333344333333333332 3
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CCh----hHHH
Q 011226 282 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE---GRL----ENAE 354 (490)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~----~~a~ 354 (490)
+++.+++.+.+..++ +...|+.....+...|+++++.+.++.+.+.++. |..+|+.....+.+. |.. ++..
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 445555555544432 3445555555555555555555555555555444 444444444333332 111 3455
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC------
Q 011226 355 ELKERARRRGADPNAKTWEIFSDYYLRN----GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK------ 424 (490)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 424 (490)
.....++...+. |...|+.+...+... ++..+|.+.+.+..+.++ .+...+..|++.|+...
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-------~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-------NHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-------CcHHHHHHHHHHHHhhhccchhh
Confidence 555555554322 445565555555442 233456666666555441 34555666666665422
Q ss_pred ------------ChHHHHHHHHHHHHcCC
Q 011226 425 ------------DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 425 ------------~~~~a~~~~~~~~~~~~ 441 (490)
..++|.++++.+.+.+|
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 23566677776644444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-05 Score=69.91 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=107.7
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011226 315 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCLE 393 (490)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (490)
.+....++.++......--..+|..++..-.+...++.|+.+|.++.+.+..+ +...+.+++.-++. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55556666666543322233577888898899999999999999999987776 66677777776654 78899999999
Q ss_pred HHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCC
Q 011226 394 KAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD--DLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 394 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 460 (490)
--++.. ..++......+.-+...|+-..+..+|++.+..+. .....+|..++..-..-|+
T Consensus 426 LGLkkf-------~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 426 LGLKKF-------GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHhc-------CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 988774 24455567788888999999999999999998844 2356899999999999999
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-06 Score=85.62 Aligned_cols=250 Identities=14% Similarity=0.161 Sum_probs=185.4
Q ss_pred CCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHcCCHHHH
Q 011226 174 PEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-----DWTTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 174 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A 248 (490)
.+.|.++-...... +-....|-..|......++.++|.++.+++... +.+ -...|.++++.-..-|.-+..
T Consensus 1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 34455544444432 223456777888888999999999999998876 422 234577777777777888888
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG 328 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (490)
.++|+++.+-. -....|..|...|.+.+..++|.++++.|.+..- -....|...+..+.+.++.+.|..++.+..+.
T Consensus 1517 ~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1517 KKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 89999988731 2345678888999999999999999999987744 35678888899999999999999999987765
Q ss_pred CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCc
Q 011226 329 CAT-YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV 407 (490)
Q Consensus 329 ~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 407 (490)
-++ -........+..-.+.|+.+.+..+|+..+...++ ....|+.+++.-.++|+.+.+..+|++....+. .
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l------~ 1666 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL------S 1666 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC------C
Confidence 443 13455566677778899999999999998876433 567899999999999999999999999999983 3
Q ss_pred CC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 408 PS--SETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 408 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
|- -..|...+..-.+.|+-+.++.+=.++.
T Consensus 1667 ~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred hhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 43 4566777766667777766665554444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-06 Score=71.16 Aligned_cols=292 Identities=12% Similarity=0.077 Sum_probs=201.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHH-HHHHHH
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPETSK-NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNS-LMTLYA 169 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 169 (490)
-+...+..+.+..+++.|++++..-.+..| +......|..+|-...++..|-..++++.... |...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 356677777888999999999988777434 77788889999999999999999999998764 55444432 344566
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHH--HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011226 170 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR--ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (490)
+.+.+..|+++...|... |+...-..-+. .....+|+..+..+.++....+ +..+.+...-...+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 788899999999888653 22221111122 3356788889998888876433 44555566667788999999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-------------Cch--------hHHHHH
Q 011226 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-------------ANI--------SYLNMI 306 (490)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~l~ 306 (490)
|.+-|+...+-+--.....|+.-+ +..+.|+++.|++...++++.|++- |.. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999887743333456777654 5678899999999999988776522 111 112233
Q ss_pred HH-------HHhcCChhhHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011226 307 QV-------LVNLKDLPGAEKCFKEWES-GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 378 (490)
Q Consensus 307 ~~-------~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (490)
.+ +.+.|+++.|.+.+..|-- .....|+.+...+.-. -..+++.+..+-+.-+...++- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 33 4567888888888877742 2233456665544322 2235566666666666665443 45788888889
Q ss_pred HHhcCCHHHHHHHHHHH
Q 011226 379 YLRNGDMKLAVDCLEKA 395 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~ 395 (490)
|+++.-++.|-+++.+-
T Consensus 320 yCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAEN 336 (459)
T ss_pred HhhhHHHhHHHHHHhhC
Confidence 99998888888887654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-06 Score=85.22 Aligned_cols=226 Identities=14% Similarity=0.140 Sum_probs=175.9
Q ss_pred CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHH
Q 011226 156 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMP---DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTT 231 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (490)
-+...|-..|....+.++.++|.++.+++... ++.- -...|.++++.-..-|.-+...++|+++.+. -.....
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHH
Confidence 45677888888888999999999999988764 2211 1245777777777788888999999999885 334567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-CchhHHHHHHHHH
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLV 310 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 310 (490)
|..|...|.+.+.+++|-++++.|.+. +......|...+..+.+..+-+.|..++.+..+.-++. ........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 889999999999999999999999885 33567789999999999999999999999887764432 1223345556667
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHH
Q 011226 311 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK--TWEIFSDYYLRNGDMK 386 (490)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~ 386 (490)
+.|+.+.++.+|+......++ -...|+..|+.-.++|+.+.++.+|++....++.|-.. .|...+..--..|+-.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 899999999999999887766 67899999999999999999999999999987776542 3444454444555543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-05 Score=76.50 Aligned_cols=327 Identities=16% Similarity=0.125 Sum_probs=181.3
Q ss_pred HHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-----------CCCCHhHHHHHHHH
Q 011226 64 KLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-----------TSKNHLTYGSLLNC 132 (490)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~~~li~~ 132 (490)
.|.--|+.+.|.+-.+.+. +...|..+...|.+..+++-|.-.+-.|.. ..++ ..=....-.
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4555677777777666553 334567777777777777776666655543 1121 222222333
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA 212 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 212 (490)
....|.+++|+.+|++... |..|=..|...|.|++|.++-+.=-+..+ ..||.....-+-..+|.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 4566888888888887766 44455566677888888887653322222 24555555666667777777
Q ss_pred HHHHHHHHHCC--------CCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 213 ERVIEEMKRDG--------RVA----------ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 213 ~~~~~~~~~~~--------~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
++.|++..... ..+ .|...|.-....+-..|+.|.|+.+|....+ |..+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 77666531110 012 2333444455555567777777777766543 55566666
Q ss_pred HhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcC
Q 011226 275 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC------ATYDIRVTNVMIGAYAKEG 348 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~ 348 (490)
|-.|+.++|-++-++- -|......+.+.|...|++.+|..+|.+..... .+.+ .-..|...+...|
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd--~~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND--MKDRLANLALMSG 1020 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHhhcC
Confidence 7777777777765542 244455567788888888888888877653210 0000 0011111122112
Q ss_pred --ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhcCCCCCCCCcCCHHHHHHHHH
Q 011226 349 --RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK--------AIDTGRGDGGKWVPSSETIRTFMR 418 (490)
Q Consensus 349 --~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~~~p~~~~~~~l~~ 418 (490)
+.-.|-.+|++. |.. +...+..|-+.|.+.+|+++.-+ ++..... ...|+...+--.+
T Consensus 1021 ~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd----~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD----AGSDPKLLRRCAD 1088 (1416)
T ss_pred chhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC----CCCCHHHHHHHHH
Confidence 222333333331 111 11223446667777666654221 1112211 1256777777777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 011226 419 HFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 419 ~~~~~g~~~~a~~~~~~~~~ 438 (490)
.++...++++|..++-..++
T Consensus 1089 FF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 78888888888887765543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.6e-06 Score=73.25 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=158.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG-NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (490)
-..+...+..++|+.+..++.+..+ -+..+|+.--.++...| ++++++..++++...+++ +..+|+.-...+.+.|+
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 3334445778899999999887543 24456666666666777 679999999999987765 34456555555556665
Q ss_pred h--hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC----H
Q 011226 315 L--PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN---GD----M 385 (490)
Q Consensus 315 ~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~ 385 (490)
. +.+..+++.+.+..++ |..+|+...-.+...|+++++++.++++++.++. |...|+.....+.+. |. .
T Consensus 122 ~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccH
Confidence 3 6778889899888776 8899999888999999999999999999998765 666777666555444 22 2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 011226 386 KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE----KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 459 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (490)
++++++..+++.... -|...|+.+...+... +...+|.+++.+....++ .+..+...|+..|+...
T Consensus 200 e~el~y~~~aI~~~P-------~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 200 DSELKYTIDAILANP-------RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGL 269 (320)
T ss_pred HHHHHHHHHHHHhCC-------CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhh
Confidence 467888888888761 3477788888777763 445679999999888887 88999999999998743
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.6e-06 Score=78.41 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 011226 410 SETIRTFMRHFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 435 (490)
..|...+..-+...|+.+.|...|-+
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHh
Confidence 34555666667777777777766543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-06 Score=76.67 Aligned_cols=220 Identities=15% Similarity=0.088 Sum_probs=145.9
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 011226 88 KTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTL 167 (490)
Q Consensus 88 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 167 (490)
|-...-..+...+...|-...|..+|+++. .|..+|.+|...|+..+|..+..+..+.. ||...|..+.+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek~--~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEKD--PDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcCC--CcchhHHHhhhh
Confidence 333444556667777777777777777653 56777777777777777777777766632 677777777776
Q ss_pred HHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011226 168 YAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (490)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+. .+....+|-.+..+..+.++++.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHH
Confidence 65555566777766644321 1112222333467777777777777776 56667777777777777778887
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
|.+.|..-.... +-+...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+....+.|.+++|.+.+.++..
T Consensus 538 av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 777777766532 12456777787788888887888877777776652 3444555556666777778877777777643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.82 E-value=3e-06 Score=73.15 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=36.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
+...+.+.|++++|+..+++..+.... .| ....+..+..++.+.|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPD-----TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344566667777777777776666410 01 2456666666777777777777766665543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-06 Score=80.27 Aligned_cols=216 Identities=15% Similarity=0.140 Sum_probs=176.7
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 011226 162 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE 241 (490)
Q Consensus 162 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (490)
..+...+...|-...|..+|++.. .|..++.+|...|+..+|..+..+..+ .+|++..|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence 566777888899999999998654 466788899999999999999988887 47899999999998888
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHH
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 321 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (490)
..-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.++ ....+|..+..+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHH
Confidence 88889999998875432 222233334457899999999998766544 2456788888888899999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 322 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++.+..
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9998887665 78899999999999999999999999999976 3466677788888889999999999999988774
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9e-06 Score=76.49 Aligned_cols=221 Identities=17% Similarity=0.235 Sum_probs=142.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 280 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (490)
.+.....+|.+|+.+++.+.... ....-|..+...|...|+++.|.++|.+.- .++-.|..|.+.|+|
T Consensus 740 eaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 34455567777777777766642 333446677778888888888888775531 345567778888888
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (490)
+.|.++-.+. .|+......|.+-..-+-+.|++.+|.++|-.+. .|+ ..|..|-+.|..++.+.+.++-
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 8887776554 2344445556666666677788888877765442 233 3567788888888877776653
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 361 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 361 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
.-. .-..|...+..-|-..|+...|...|-+.. -|.+....|..++-|++|.++-+ ..|
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------------d~kaavnmyk~s~lw~dayriak---teg 935 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------------DFKAAVNMYKASELWEDAYRIAK---TEG 935 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------------hHHHHHHHhhhhhhHHHHHHHHh---ccc
Confidence 211 122455566777888888888887765432 35566777888888888866644 344
Q ss_pred CCCCHHhHHHHHHHHHhcCCCcHHHH
Q 011226 441 DDLGVEVFEPLIRTYAAAGRTSPVML 466 (490)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~g~~~~~~~ 466 (490)
- .|..-...++.+-.-.|+-+-.++
T Consensus 936 g-~n~~k~v~flwaksiggdaavkll 960 (1636)
T KOG3616|consen 936 G-ANAEKHVAFLWAKSIGGDAAVKLL 960 (1636)
T ss_pred c-ccHHHHHHHHHHHhhCcHHHHHHH
Confidence 4 666666666666666666544444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-05 Score=80.43 Aligned_cols=171 Identities=14% Similarity=0.129 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 345 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (490)
.+..+..+|-+.|+.++|..+|+++.+..+. +....+.+...|... ++++|.+++...... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 4445555555555555555555555554422 444445555555555 555555555443322 33
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 346 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT-GRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
..+++..+.++|.++.... |+.. +.-..+.+.+... | +.--..++..+-..|...+
T Consensus 181 ~~kq~~~~~e~W~k~~~~~--~~d~---------------d~f~~i~~ki~~~~~------~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYN--SDDF---------------DFFLRIERKVLGHRE------FTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred hhhcchHHHHHHHHHHhcC--cccc---------------hHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhhh
Confidence 4445555555555555531 1211 1111222222222 1 1123445556667788888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCC
Q 011226 425 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVS 477 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~ 477 (490)
+++++..+++.+++..+ .|..+..-++.+|...=..-.-+-+.++..|+.-+
T Consensus 238 ~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 238 DWDEVIYILKKILEHDN-KNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNN 289 (906)
T ss_pred hhhHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHccCcchHHHHHHHhccccC
Confidence 99999999999999999 78888999999997332222233444455555444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.1e-05 Score=73.19 Aligned_cols=338 Identities=10% Similarity=0.071 Sum_probs=200.3
Q ss_pred CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 70 LYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKM 149 (490)
Q Consensus 70 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 149 (490)
+..+..+..+++-..+ -|+ +...+...+-+++|..+|+...- +....+.||.- -++++.|.+.-++.
T Consensus 1035 d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~---n~~A~~VLie~---i~~ldRA~efAe~~ 1101 (1666)
T KOG0985|consen 1035 DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDM---NVSAIQVLIEN---IGSLDRAYEFAERC 1101 (1666)
T ss_pred ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcc---cHHHHHHHHHH---hhhHHHHHHHHHhh
Confidence 4445555555554443 132 34556667778888888887653 55555555542 36777887777665
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH
Q 011226 150 KELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 229 (490)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 229 (490)
.+ +..|..+..+-.+.|...+|.+-|-+. -|+..|..+++.+.+.|.+++-.+++....+.. -.|..
T Consensus 1102 n~------p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~i 1168 (1666)
T KOG0985|consen 1102 NE------PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYI 1168 (1666)
T ss_pred CC------hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccc
Confidence 44 356888888888888888887766432 266778888888888888888888888887766 56666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 230 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
.+ .|+-+|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+ .-|..|...+
T Consensus 1169 d~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TL 1230 (1666)
T KOG0985|consen 1169 DS--ELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTL 1230 (1666)
T ss_pred hH--HHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHH
Confidence 55 78888888888777655542 366666667777777777777776666543 2355566666
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 389 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 389 (490)
...|++..|.+.-++. .+..+|..+-.+|...+.+.-| +|--.++.....-..-++.-|-..|-+++.+
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 6666666666544432 1445666666666555444332 1222222233344555666666666666666
Q ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCC------CCCHHhHHHHHHHHHhcCCCc
Q 011226 390 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVD------DLGVEVFEPLIRTYAAAGRTS 462 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~------~~~~~~~~~l~~~~~~~g~~~ 462 (490)
.+++..+-.. +...-.|+-|.-.|.+- ++++..+.++-... .++ -.....|+-|+-.|.+-..+.
T Consensus 1300 sl~Ea~LGLE-------RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyD 1371 (1666)
T KOG0985|consen 1300 SLLEAGLGLE-------RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYD 1371 (1666)
T ss_pred HHHHhhhchh-------HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 6666554332 12333455554444443 23433333332221 111 012445666666665555555
Q ss_pred HHHHHHHh
Q 011226 463 PVMLRRLK 470 (490)
Q Consensus 463 ~~~~~~m~ 470 (490)
-+....|.
T Consensus 1372 NAa~tmm~ 1379 (1666)
T KOG0985|consen 1372 NAALTMME 1379 (1666)
T ss_pred HHHHHHHh
Confidence 55544443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-06 Score=70.19 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=92.4
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY-LRNGD--MKLA 388 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 388 (490)
.++.+++...++......+. |...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55666777777777766665 7778888888888888888888888888875432 556666666653 56666 4888
Q ss_pred HHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 389 VDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
.+++++.++.. | +...+..+...+.+.|++++|...|+++++..+ |+..-+
T Consensus 130 ~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~-~~~~r~ 181 (198)
T PRK10370 130 REMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS-PRVNRT 181 (198)
T ss_pred HHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCccHH
Confidence 88888888876 4 467777777888888888888888888888877 554333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-06 Score=74.02 Aligned_cols=185 Identities=10% Similarity=0.019 Sum_probs=95.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH--hh
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSS----MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS--YT 195 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~ 195 (490)
....+..+...+...|+++.|...|+++.... |+. .++..+..++...|++++|...++++.+....... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34445555555556666666666666655533 221 23445555556666666666666666553211000 12
Q ss_pred HHHHHHHHHHc--------CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH
Q 011226 196 YNVWMRALAAV--------NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY 267 (490)
Q Consensus 196 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 267 (490)
+..+..++... |+.+.|.+.|+.+.+. .+.+...+..+..... ... ... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 33333333332 5677777777777765 3333333222211100 000 000 011
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCC-C-CchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 011226 268 QFLITLYGQTGNLSEVYRIWRSLRLAFPN-T-ANISYLNMIQVLVNLKDLPGAEKCFKEWESG 328 (490)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (490)
..+...|.+.|++.+|...++...+..+. | ....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23445567777777777777777665432 1 2345666777777777777777777766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.3e-06 Score=79.81 Aligned_cols=132 Identities=16% Similarity=0.241 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA 343 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (490)
...+..|.....+.|..++|..+++...+..+. +......+...+.+.+++++|...++......+. +......+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 444444444444444444544444444442221 1222333444444444444444444444444433 44444444444
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 344 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
+...|++++|..+|+++...+. -+...+..+..++...|+.++|...|++..+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444444444444444211 12334444444444444444444444444444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-06 Score=67.55 Aligned_cols=125 Identities=10% Similarity=-0.110 Sum_probs=92.6
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 320 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.+++...+.. +..+..+...+...|++++|...|+......+ .+...|..+..++...|++++|+..|++.....
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445544432 22344567777888888888888888887543 266777788888888888888888888888876
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
. .+...+..+..++...|++++|...|+..++..| .++..|.....+...
T Consensus 89 p-------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p-~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 A-------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY-ADASWSEIRQNAQIM 138 (144)
T ss_pred C-------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 1 4577888888888888888888888888888887 777777666655543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-05 Score=80.33 Aligned_cols=218 Identities=13% Similarity=0.069 Sum_probs=125.0
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 011226 90 VSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHL-TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLY 168 (490)
Q Consensus 90 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 168 (490)
...+..|+..+...+++++|.++.+...+..|+.. .|-.+...+...++.+.+.-+ .+ +...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhc
Confidence 34555666666666666666666665555444432 333333344455554444333 21 2222
Q ss_pred HhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011226 169 AKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 248 (490)
....++.-+..++..|...+ -+...+-.+..+|-+.|+.++|..+++++.+. .+-++.+.|.+...|... ++++|
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHH
Confidence 22233333333333443322 23456677888888999999999999999987 678888889999999888 99999
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-------------------CCchhHHHHHHHH
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-------------------TANISYLNMIQVL 309 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~ 309 (490)
.+++.+.... +...+++.++.++|.++....+. --..++..+-..|
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 9888887653 44455666666666666543321 1112223333444
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 345 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (490)
-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 4555555555555555555444 4444444444444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-05 Score=75.10 Aligned_cols=213 Identities=16% Similarity=0.138 Sum_probs=145.1
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHh-CCC--------CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEK-RGM--------NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN 122 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 122 (490)
..+...|..+.+.+.+.++++-|.-.+-.|.. +|. .|+ .+-..+.......|.+++|+.+|++...
T Consensus 754 IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---- 828 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---- 828 (1416)
T ss_pred HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----
Confidence 35667788899999999888888777666632 111 122 2333444455678999999999988765
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHH----------HHCC----
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEM----------KASS---- 188 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~---- 188 (490)
|..|=..|-..|.|++|+++-+.--... =..||......+-..++.+.|++.|++. ....
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 4445566777899999999877533222 2345655566666667777777766532 1111
Q ss_pred -----CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC
Q 011226 189 -----IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD 263 (490)
Q Consensus 189 -----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 263 (490)
-.-|...|.-...-.-..|+.+.|+.+|...... ..+++..|-.|+.++|-++-++- -|
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~----------fs~VrI~C~qGk~~kAa~iA~es------gd 966 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY----------FSMVRIKCIQGKTDKAARIAEES------GD 966 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh----------hhheeeEeeccCchHHHHHHHhc------cc
Confidence 1224445555666666788899999888877553 35777778889999998887663 35
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
......+.+.|-..|++.+|..+|.+.+
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6677788889999999999998887664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-05 Score=73.90 Aligned_cols=375 Identities=12% Similarity=-0.004 Sum_probs=224.0
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 69 KLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLE 147 (490)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 147 (490)
++...|+..|-...+.... -...|..+...|....+...|.+.|+...+ ...+...+......|++..+++.|..+.-
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3356666666666555422 234688888888888888999999999888 44456788889999999999999998843
Q ss_pred HHHhCCCCCCc--chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 011226 148 KMKELNLGFSS--MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV 225 (490)
Q Consensus 148 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 225 (490)
..-+... .-. ..|...--.|.+.++...|..-|+...+..++ |...|..+..+|..+|.+..|.++|.++... .
T Consensus 551 ~~~qka~-a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 551 RAAQKAP-AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHhhhch-HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 3333211 111 22223333466778888888888888776433 6678888999999999999999999888775 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-------H
Q 011226 226 AADWTTFSNLASIYVEAGLFEKAERALKELENRN------AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR-------L 292 (490)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~ 292 (490)
|.+...--...-.-+..|.+.+|+..+..+...- ..--..++-.+...+.-.|-..++.++++.-+ .
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4444443444555667888888888887765421 11112223222222333333333333333221 1
Q ss_pred hCCCCCchhHHHHHHH-----------------------HHhcCCh---h---hHHHHHHHHHhcCCCCChhhHHHHHHH
Q 011226 293 AFPNTANISYLNMIQV-----------------------LVNLKDL---P---GAEKCFKEWESGCATYDIRVTNVMIGA 343 (490)
Q Consensus 293 ~~~~~~~~~~~~l~~~-----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (490)
.....+...|..+-++ ....+.. + -+.+.+-.-.+ ...+...|..|+..
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHH
Confidence 1111111112111111 1111111 1 01111111111 11123344444443
Q ss_pred HHh----cC----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHH
Q 011226 344 YAK----EG----RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT 415 (490)
Q Consensus 344 ~~~----~~----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~ 415 (490)
|.+ .+ +...|...+...++.. .-+..+|+.+--. ...|++.-|.-.|-+..... +.+..+|..
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-------p~~~~~W~N 855 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-------PTCHCQWLN 855 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-------ccchhheec
Confidence 333 12 2235677777776642 2356667665544 66677777777776666654 245778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 416 FMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 416 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+...+.+..+++.|...|.......| .|...|-.........|+
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHH
Confidence 88889999999999999999999999 888888777666666676
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-08 Score=54.97 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=15.5
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 188 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-05 Score=65.01 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=149.0
Q ss_pred cCCHHHHHHHHHHHHH---cc-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChh
Q 011226 242 AGLFEKAERALKELEN---RN-AHRDLS-AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP 316 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (490)
..+.++..+++.++.. +| ..++.. .|..++-+....|+.+.|...++.+....+. +..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence 4678899999888754 34 445543 3555666778889999999999999887643 2222222233345679999
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 317 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
+|.++++.+.+.++. |..++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999988765 7778877777777888888999988888876 56699999999999999999999999999999
Q ss_pred hcCCCCCCCCcCC-HHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 011226 397 DTGRGDGGKWVPS-SETIRTFMRHFEQEK---DVDGAEGFLEILKKAVDDLGVEVFEPL 451 (490)
Q Consensus 397 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l 451 (490)
-.. |- +..+..+.+.+.-.| +.+.|.+.|++.++..+ .+...+..+
T Consensus 182 l~~--------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~-~~~ral~GI 231 (289)
T KOG3060|consen 182 LIQ--------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP-KNLRALFGI 231 (289)
T ss_pred HcC--------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh-HhHHHHHHH
Confidence 876 54 555666666655444 57788899999998776 454444333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.9e-06 Score=68.87 Aligned_cols=120 Identities=10% Similarity=0.101 Sum_probs=65.8
Q ss_pred cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--hhHH
Q 011226 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY-AKEGR--LENA 353 (490)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a 353 (490)
.++.+++...++...+..+. +...|..+...|...|+++.|...|+...+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34445555555555544432 4445555556666666666666666665555444 555555555542 44444 3566
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++++..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666654332 44555555555666666666666666666554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-08 Score=54.66 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=14.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 259 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL 290 (490)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (490)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5e-05 Score=62.88 Aligned_cols=240 Identities=14% Similarity=0.119 Sum_probs=132.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChh
Q 011226 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS 281 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (490)
-+.-.|.+..++..-...... +.+...-..+-++|...|.+..... ++.... .|.......+.......++.+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 334455555555444433322 1233333344555555555443322 222211 233344444443333344433
Q ss_pred HHH-HHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 282 EVY-RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360 (490)
Q Consensus 282 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (490)
.-+ ++.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+++-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 233334333333332333333455677777777777666521 2223333334456667777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 361 RRRGADPNAKTWEIFSDYYL----RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 361 ~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
.+- .+..+.+-|..++. -.+.+.+|.-+|+++-+.. .|+..+.+....++...|++++|..+++.+
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-------~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-------PPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-------CCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 763 25556665655553 2345777777888777752 377777777777777788888888888888
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 437 KKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
+...+ .++.+...++-+-...|+.++..
T Consensus 234 L~kd~-~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 234 LDKDA-KDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred HhccC-CCHHHHHHHHHHHHHhCCChHHH
Confidence 87777 67777777777777777764443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.4e-06 Score=67.05 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=86.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
+-..+...|+-+....+....... .+.+......++....+.|++..|...|.+..... ++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 444555555555555555554432 34444454455555666666666666666655532 245566666666666666
Q ss_pred ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 011226 279 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKE 358 (490)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 358 (490)
+.++|..-|.+..+..+. +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666666655554332 3344555555555566666666666665554433 44455555555566666666665554
Q ss_pred H
Q 011226 359 R 359 (490)
Q Consensus 359 ~ 359 (490)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-05 Score=66.36 Aligned_cols=158 Identities=16% Similarity=0.021 Sum_probs=106.7
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 011226 94 AIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG 172 (490)
Q Consensus 94 ~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (490)
..+-..+.-.|+-+....+...... .+.|....+..+....+.|++..|...|++...... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHcc
Confidence 4444555556666666666665444 444555566677777777777777777777776543 67777777777777777
Q ss_pred CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011226 173 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 252 (490)
++++|..-|.+..+... -++...+.+.-.+.-.|+.+.|..++...... -.-+..+-..+.......|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777766422 24455666777777777777777777777765 3446666667777777777777777766
Q ss_pred HHH
Q 011226 253 KEL 255 (490)
Q Consensus 253 ~~~ 255 (490)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00017 Score=59.43 Aligned_cols=190 Identities=18% Similarity=0.232 Sum_probs=140.6
Q ss_pred HcCChhHHHHHHHHHHHCC---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh
Q 011226 205 AVNDISGAERVIEEMKRDG---RVAAD-WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 280 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (490)
...+.++..+++.++.... ...++ +..|..+.-+....|+.+.|...++.+.+.- +-+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 3457889999988887642 12233 3456677778888999999999999988754 22333322223335567999
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (490)
++|.++++.+.+.++ .|..++..=+...-..|+.-+|++-+....+.-+. |...|..+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998774 36667766666666778888898888888776554 9999999999999999999999999999
Q ss_pred HHcCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC
Q 011226 361 RRRGADP-NAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTG 399 (490)
Q Consensus 361 ~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 399 (490)
.-. .| ++..+..+...+.-.| +..-|.++|.+.++..
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 874 34 4445556666554444 5667899999999886
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.3e-05 Score=67.46 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=56.7
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011226 170 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE 249 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 249 (490)
..|++++|+..++.+.+. .+-|+.........+...|+..+|.+.++.+... .|........+..+|.+.|++.+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 445555555555555443 1123333333444555555555555555555553 2333444444555555555555555
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011226 250 RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS 289 (490)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (490)
.+++...... +-|+..|..|.++|...|+..++.....+
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 5555544432 23445555555555555555555444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4e-06 Score=65.54 Aligned_cols=117 Identities=15% Similarity=-0.048 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 433 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 433 (490)
..++++..+. .|+ .+......+...|++++|...|+..+.... .+...|..+..++...|++++|...|
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-------WSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4556666653 344 355667788999999999999999998861 46889999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHH
Q 011226 434 EILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKK 482 (490)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~ 482 (490)
+++...+| .+..++..+..++...|+..+++...-+...+.|+.....
T Consensus 82 ~~Al~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 82 GHALMLDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999 9999999999999999998888877777777888765543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-05 Score=78.50 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=125.2
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 69 KLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELMTEKAEALLE 147 (490)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 147 (490)
....+++.-+...... +..+...+..|..+..+.|.+++|..+++.+.+..|+ ......+...+.+.+++++|+..++
T Consensus 66 ~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 66 HKPAAALPELLDYVRR-YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred cchHhhHHHHHHHHHh-ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3334444333333333 3456888888999999999999999999999995555 5577888899999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 011226 148 KMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA 227 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 227 (490)
+.....+ -+......+..++.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|+...+. ..+
T Consensus 145 ~~l~~~p-~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~ 220 (694)
T PRK15179 145 LYFSGGS-SSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGD 220 (694)
T ss_pred HHhhcCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCc
Confidence 9998763 345556677778888999999999999998743 234778888889999999999999999999886 556
Q ss_pred CHHHHHHHH
Q 011226 228 DWTTFSNLA 236 (490)
Q Consensus 228 ~~~~~~~l~ 236 (490)
....|+.++
T Consensus 221 ~~~~~~~~~ 229 (694)
T PRK15179 221 GARKLTRRL 229 (694)
T ss_pred chHHHHHHH
Confidence 666655443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-05 Score=63.75 Aligned_cols=242 Identities=14% Similarity=0.076 Sum_probs=138.6
Q ss_pred cHHHHHHHHHHhcCC-CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHH-Hhh
Q 011226 38 SVRQQLNQFLKSKKR-VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENY-FVD 115 (490)
Q Consensus 38 ~~~~~l~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~ 115 (490)
.+...++...+.... -.......+.++|...|.+...+.- +.... .|.......+...+..-++.+.-+.- .+.
T Consensus 23 nyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~ 98 (299)
T KOG3081|consen 23 NYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILASLYEL 98 (299)
T ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHH
Confidence 344445444433322 3344445556677767766544332 22222 33333344444444434444433332 333
Q ss_pred cCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH
Q 011226 116 LPE--TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS 193 (490)
Q Consensus 116 ~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 193 (490)
+.. ..-+......-...|++.|++++|++..+... +......=+..+.+..+++-|.+.+++|.+.. +.
T Consensus 99 ~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 99 VADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 332 11122223333456778888888888776622 22333333344556677788888888887743 56
Q ss_pred hhHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 011226 194 YTYNVWMRALAA----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQF 269 (490)
Q Consensus 194 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (490)
.|.+.|..++.+ .+++..|.-+|+++-+. .+|++.+.+-.+.++...|++++|..+++....+.. .+..+...
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~N 246 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHH
Confidence 667666666544 34677888888888775 788888888888888888888888888888877654 34555555
Q ss_pred HHHHHHhcCChhH-HHHHHHHHHHhCC
Q 011226 270 LITLYGQTGNLSE-VYRIWRSLRLAFP 295 (490)
Q Consensus 270 l~~~~~~~~~~~~-a~~~~~~~~~~~~ 295 (490)
++.+-...|...+ ..+.+.++....+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 5555555555433 4455666665443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0012 Score=64.23 Aligned_cols=420 Identities=11% Similarity=0.055 Sum_probs=233.8
Q ss_pred HHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHH
Q 011226 47 LKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTY 126 (490)
Q Consensus 47 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 126 (490)
.++++.+.+..+..+ .+.+.|+.++|..+++.....+.. |..|...+-.+|.+.|..++|..+|+......|+....
T Consensus 37 kk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell 113 (932)
T KOG2053|consen 37 KKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELL 113 (932)
T ss_pred HHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHH
Confidence 334444444444433 346789999999888887655533 77788888888999999999999999999877887778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC-CCC---------cHHHHHHHHHHCC-CCCCHhh
Q 011226 127 GSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG-HPE---------KIPAIIQEMKASS-IMPDSYT 195 (490)
Q Consensus 127 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~---------~a~~~~~~~~~~~-~~p~~~~ 195 (490)
..+..+|++.+++.+-.+.--++-+. .+.+...|=++++.+.+.. ..+ -|.+.++.+.+.+ ..-+..-
T Consensus 114 ~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE 192 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE 192 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH
Confidence 88888888888887655554444442 3234445555566555432 222 2444555554443 1112222
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
...-...+...|++++|..++..-....-...+...-+.-+..+...++|.+..++-.++...|. |. |...++.+.
T Consensus 193 ~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~ 268 (932)
T KOG2053|consen 193 IILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN--DD--YKIYTDSVF 268 (932)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC--cc--hHHHHHHHH
Confidence 22233455677888899888833332211344444455667778888899988888888888764 32 333222211
Q ss_pred h----c------------CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH---hcCChhhHHHHHHHHHhcCCCCChhh
Q 011226 276 Q----T------------GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV---NLKDLPGAEKCFKEWESGCATYDIRV 336 (490)
Q Consensus 276 ~----~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (490)
+ . +..+...+...+..... ....|.+-+.+.. .-|+.+++.-.|- .+.|.. ..
T Consensus 269 klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~--~kfg~k---pc 340 (932)
T KOG2053|consen 269 KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYF--KKFGDK---PC 340 (932)
T ss_pred HHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHH--HHhCCC---cH
Confidence 1 0 11111111111111110 1123333333333 3455555443332 222222 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----H---HHHHHHHHHhcCC-----HHHHHHHHHHHH---hcCCC
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAK----T---WEIFSDYYLRNGD-----MKLAVDCLEKAI---DTGRG 401 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~---~~~l~~~~~~~g~-----~~~A~~~~~~~~---~~~~~ 401 (490)
|..=+..|...=..+.-..++...... .++.. . +...+..-...|. .+.-..++.+.. +.|..
T Consensus 341 c~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls 418 (932)
T KOG2053|consen 341 CAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLS 418 (932)
T ss_pred hHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccc
Confidence 333344444444555556666665542 22222 0 1222222222232 233334443332 23333
Q ss_pred CCCCCcCCH---------HHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHH
Q 011226 402 DGGKWVPSS---------ETIRTFMRHFEQEKDVD---GAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLR 467 (490)
Q Consensus 402 ~~~~~~p~~---------~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~ 467 (490)
-+++.-|+. -+.+.|++.|.+.++.. +|+-+++......+ -|..+--.|++.|+-.|- .+.+++.
T Consensus 419 ~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~-hnf~~KLlLiriY~~lGa~p~a~~~y~ 497 (932)
T KOG2053|consen 419 LSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSP-HNFQTKLLLIRIYSYLGAFPDAYELYK 497 (932)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 233333432 23467778888888755 56677888777777 888888999999999998 4556677
Q ss_pred HHhhCCCCCCHHHHHHHH
Q 011226 468 RLKMEKVEVSEASKKLLE 485 (490)
Q Consensus 468 ~m~~~~~~p~~~~~~~l~ 485 (490)
.+.-..|.-|.--+-++.
T Consensus 498 tLdIK~IQ~DTlgh~~~~ 515 (932)
T KOG2053|consen 498 TLDIKNIQTDTLGHLIFR 515 (932)
T ss_pred hcchHHhhhccchHHHHH
Confidence 777667766655444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-05 Score=62.04 Aligned_cols=100 Identities=11% Similarity=0.059 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
......+...+...|++++|...|+.+...+. .+...+..+...+...|++++|...++...+.+ ..+...+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~ 88 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-------PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCChHHH
Confidence 34444555566666666666666666665432 244555566666666666666666666666654 1335555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..+..++...|++++|...+++..+..|
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5666666666666666666666666654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00018 Score=65.10 Aligned_cols=119 Identities=11% Similarity=-0.010 Sum_probs=67.3
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 388 (490)
...|+++.|+..++.+....+. |+..+....+.+.+.|+.++|.+.++.+... .|+ ....-.+..+|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3456666666666665555443 5555555556666666666666666666654 333 33444455566666666666
Q ss_pred HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 389 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+.++++..... .-|+..|..|..+|...|+..++.....+...
T Consensus 394 i~~L~~~~~~~-------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 394 IRILNRYLFND-------PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHhhcC-------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 66666665554 13455666666666666665555555544443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00042 Score=68.05 Aligned_cols=391 Identities=12% Similarity=-0.031 Sum_probs=226.4
Q ss_pred HHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC---HhHHHHHHH
Q 011226 55 KWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN---HLTYGSLLN 131 (490)
Q Consensus 55 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~li~ 131 (490)
...|..+-..|+...+...|...|+..-+.+ ..+........+.|++..+++.|..+.-...+..|- ...|-..--
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4556666667777778889999999987666 346777888899999999999999885444332111 122333444
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHH--HHHHHcCCh
Q 011226 132 CYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM--RALAAVNDI 209 (490)
Q Consensus 132 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~ 209 (490)
.|.+.++...|+.-|+.....++ .|...|..+..+|...|.+..|+++|.+.... .|+. +|.... -.-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 57788999999999999988765 67889999999999999999999999988763 4543 333322 234678899
Q ss_pred hHHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHccCCCCHHHHHHHHHHHHhc
Q 011226 210 SGAERVIEEMKRDGR-----VAADWTTFSNLASIYVEAGLFEKAERALKEL-------ENRNAHRDLSAYQFLITLYGQT 277 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 277 (490)
.++...+..+..... ...-..++..+...+.-.|-..+|..+++.- ..+....+...|-.+-.+|.-.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 999998888765310 1111222222223333333333344433332 2222112222332222222110
Q ss_pred CChh------HHHHHHH-HHHHhCC--------------------CCCchhHHHHHHHHHh----c----CChhhHHHHH
Q 011226 278 GNLS------EVYRIWR-SLRLAFP--------------------NTANISYLNMIQVLVN----L----KDLPGAEKCF 322 (490)
Q Consensus 278 ~~~~------~a~~~~~-~~~~~~~--------------------~~~~~~~~~l~~~~~~----~----~~~~~a~~~~ 322 (490)
-..+ ....++. +....+. ..+..+|..++..|.+ . .+...|...+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 0000 0001111 1111111 1123334334433332 1 1223567777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011226 323 KEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD 402 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 402 (490)
....+..-. +..+|+.|.-. ...|.+.-|...|-.-.... +-...+|..+...+.+..+++.|...|.......+
T Consensus 807 KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-- 881 (1238)
T KOG1127|consen 807 KKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-- 881 (1238)
T ss_pred HHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCc--
Confidence 776655443 66777776554 55577777777776555432 22556777777778888899999999988877751
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHhHHHHHHHHHhcCC
Q 011226 403 GGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK----AVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 403 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
.+...|--........|+.-++..+|..--. .|--++..-|......-...|+
T Consensus 882 -----~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 882 -----LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred -----hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 2345554444444566776676666665211 1111444444444444455555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.4e-06 Score=63.74 Aligned_cols=123 Identities=7% Similarity=-0.075 Sum_probs=99.0
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011226 356 LKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 434 (490)
Q Consensus 356 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 434 (490)
.++.+... .| +......+...+...|++++|.+.|+.+...+. .+...+..+..++...|++++|...++
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-------YNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 33 334456677788899999999999999998861 467888899999999999999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHHHhh
Q 011226 435 ILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 488 (490)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c 488 (490)
+..+.++ .+...+..+..+|...|+...++........+.|+...+..+...|
T Consensus 76 ~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 76 LAAALDP-DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 9999988 8899999999999999997777666666667788888876665544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.2e-05 Score=60.13 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYD--IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA--KTWEIFSD 377 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~ 377 (490)
|..++..+ ..++...+...++.+.+..+... ....-.+...+...|++++|...|+.+......|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33333333 35666666666666665443311 122233445666677777777777777765422221 12333455
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 378 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
.+...|++++|+..++...... .....+......+.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--------~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--------FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--------hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777775532222 33445566667777777777777777654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.25 E-value=6e-05 Score=57.03 Aligned_cols=109 Identities=9% Similarity=-0.010 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGAD--PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
++..++..+.+.|++++|...|..+.+.... .....+..+...+.+.|+++.|...|+.+...... .......+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----SPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC----CCcccHHH
Confidence 4455666777778888888888887764221 11234556677778888888888888887776410 00124556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
..+..++.+.|+.++|...++++.+..| .+..+..
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~ 114 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYP-GSSAAKL 114 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCc-CChhHHH
Confidence 6777777888888888888888888776 5554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.7e-05 Score=69.26 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN 382 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 382 (490)
..++..+...++++.|..+++++.+..+ + ....+++.+...++-.+|.+++++..+... -+...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~p--e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDP--E--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCC--c--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 4455555666777777777777776642 2 334466666667777777777777775422 2445555555667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 383 GDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 383 g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
++++.|+++.+++.+.. |+ ..+|..|..+|.+.|+++.|+..+..+.-.
T Consensus 248 ~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 77777777777777775 54 557777777777777777777777665544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.8e-05 Score=68.71 Aligned_cols=123 Identities=21% Similarity=0.201 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 127 GSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 127 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
..|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+......-.+.+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344455555566666666666666644 33 33445555555555566666666665432 22444444445556666
Q ss_pred CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 207 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
++.+.|..+.+++.+. .|.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666664 44455566666666666666666666665543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.2e-06 Score=47.76 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNLGFS 157 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 157 (490)
+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777776666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0002 Score=56.23 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=48.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH--HHHHHHHHHHHhcCCh
Q 011226 206 VNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL--SAYQFLITLYGQTGNL 280 (490)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 280 (490)
.++...+...++.+.+. .+.+ ....-.+...+...|++++|...|+.+......++. .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 44555555555555543 2222 122223344445555555555555555543321111 1222234444455555
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 323 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (490)
++|+..++...... .....+......+...|+.++|...|+
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555554321111 112233334444455555555554444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.8e-06 Score=46.35 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGADPN 368 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 368 (490)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.2e-06 Score=46.15 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 011226 124 LTYGSLLNCYCKELMTEKAEALLEKMKELNLGF 156 (490)
Q Consensus 124 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (490)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.013 Score=57.45 Aligned_cols=375 Identities=10% Similarity=0.064 Sum_probs=212.8
Q ss_pred HHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHH----HHHHHhhc
Q 011226 41 QQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDA----AENYFVDL 116 (490)
Q Consensus 41 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~ 116 (490)
..++.....+.. +..++..+-..|.+.++.++|..+|+...+.. |+......+..+|.|.+++.+ |.+++...
T Consensus 64 ~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~ 140 (932)
T KOG2053|consen 64 KLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNF 140 (932)
T ss_pred HHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566665444443 77788888889999999999999999998775 677777788889999888876 45555544
Q ss_pred CCCCCCHhHHHHHHHHHHHc-CCHHH---------HHHHHHHHHhCC-CCCCcchHHHHHHHHHhcCCCCcHHHHHH-HH
Q 011226 117 PETSKNHLTYGSLLNCYCKE-LMTEK---------AEALLEKMKELN-LGFSSMPFNSLMTLYAKTGHPEKIPAIIQ-EM 184 (490)
Q Consensus 117 ~~~~~~~~~~~~li~~~~~~-~~~~~---------a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~ 184 (490)
++ +...+=++++.+... ...+. |.+.++.+.+.+ ..-+..-...-...+...|++++|++++. ..
T Consensus 141 pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~l 217 (932)
T KOG2053|consen 141 PK---RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITL 217 (932)
T ss_pred Cc---ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 43 444333344444332 22222 445566665543 21122222233344556889999999994 33
Q ss_pred HHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----------------cCCHHHH
Q 011226 185 KASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----------------AGLFEKA 248 (490)
Q Consensus 185 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~A 248 (490)
.+.-...+...-+--+..+...+++.+..++-.++...| ..| |...+..+.+ .+..+..
T Consensus 218 a~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~ 292 (932)
T KOG2053|consen 218 AEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDEC 292 (932)
T ss_pred HHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHH
Confidence 333233444555567788889999999999999999986 222 3333332221 1222333
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYG---QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 325 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 325 (490)
.+...+..... ....|-+-+.++. .-|+.+++...|-+ +-|-.| .|..=+..|...=..+.-..++...
T Consensus 293 ~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l 364 (932)
T KOG2053|consen 293 IEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKL 364 (932)
T ss_pred HHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHh
Confidence 33333322221 1223333333333 44777776554432 223232 3333344454444555666666665
Q ss_pred HhcCCCCC--hh---hHHHHHHHHHhcCC-----hhHHHHHHHHHH---HcC------CCCCHHH---------HHHHHH
Q 011226 326 ESGCATYD--IR---VTNVMIGAYAKEGR-----LENAEELKERAR---RRG------ADPNAKT---------WEIFSD 377 (490)
Q Consensus 326 ~~~~~~~~--~~---~~~~li~~~~~~~~-----~~~a~~~~~~~~---~~~------~~p~~~~---------~~~l~~ 377 (490)
........ .. .+...+..-.-.|. .+....++.+.. ++| +-|+..+ -+.++.
T Consensus 365 ~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid 444 (932)
T KOG2053|consen 365 VLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLID 444 (932)
T ss_pred hccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHH
Confidence 54322111 11 12222333333342 233344443332 222 2334332 356677
Q ss_pred HHHhcCCHH---HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 378 YYLRNGDMK---LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 378 ~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+-+.++.. +|+-+++...... .-|..+=..+++.|+-.|-+..|.+.|+.+--..+
T Consensus 445 ~~rktnd~~~l~eaI~LLE~glt~s-------~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 445 LWRKTNDLTDLFEAITLLENGLTKS-------PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhcC-------CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 788887755 6777777777665 14456667888999999999999999887654443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.9e-06 Score=45.71 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00034 Score=64.02 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=63.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 421 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 421 (490)
..+...|++++|+..|+++++.+.. +...|..+..+|...|++++|+..++++++... .+...|..+..+|.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------~~~~a~~~lg~~~~ 81 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-------SLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CCHHHHHHHHHHHH
Confidence 4455566677777777766664322 445555666666667777777777777766651 23556666666667
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 422 QEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 422 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
..|++++|...|+++++.+| .+......+..+
T Consensus 82 ~lg~~~eA~~~~~~al~l~P-~~~~~~~~l~~~ 113 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAP-GDSRFTKLIKEC 113 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 77777777777777776666 455444444333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=66.18 Aligned_cols=105 Identities=12% Similarity=-0.019 Sum_probs=92.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 376 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
...+...|++++|+++|+++++... .+...|..+..+|...|++++|...++++++..| .+...|..+..+|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-------NNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHH
Confidence 4566788999999999999999871 3478888999999999999999999999999998 8999999999999
Q ss_pred HhcCCCcHHHHHHHhhCCCCCCHHHHHHHHHhh
Q 011226 456 AAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 488 (490)
Q Consensus 456 ~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c 488 (490)
...|++.+++....+...+.|+..........|
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999998888877777788899988877777666
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00044 Score=60.94 Aligned_cols=129 Identities=14% Similarity=0.215 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK-EGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (490)
|..++...-+.+..+.|..+|....+.+. .+..+|......-.. .++.+.|..+|+...+. +..+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 44445555555555555555555543221 123333333333222 33444455555555543 2334445555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCcCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 381 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSS----ETIRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
..++.+.|..+|++.+..- |.. ..|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 82 ~~~d~~~aR~lfer~i~~l--------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 82 KLNDINNARALFERAISSL--------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTS--------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5555555555555555442 222 355555555555555555555555555543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00022 Score=51.12 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=42.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
+...+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.++....... .+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHH
Confidence 444444555555555555555443 233334444455555555555555555555444322 12234444444555555
Q ss_pred ChhHHHHHHHHHH
Q 011226 279 NLSEVYRIWRSLR 291 (490)
Q Consensus 279 ~~~~a~~~~~~~~ 291 (490)
++++|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555554443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.2e-05 Score=67.73 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=88.3
Q ss_pred CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCC----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHH
Q 011226 87 NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET----SKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFN 162 (490)
Q Consensus 87 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 162 (490)
+.+......+++.+....+++.+..++-..... .--..+..++++.|.+.|..+.+++++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445556667777777777777777777666552 1112345688888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 163 SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 163 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888887766666667766666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00085 Score=54.52 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSET 412 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~ 412 (490)
.+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|+..+++.++.. | +...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~ 108 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--------PKQPSA 108 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHH
Confidence 445555556666666666666666665322221 2455556666666677777777776666654 3 2444
Q ss_pred HHHHHHHHHhcCC--------------hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 413 IRTFMRHFEQEKD--------------VDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 413 ~~~l~~~~~~~g~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+..+..++...|+ +++|.+++++....+| .+ +..++.-+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p-~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP-NN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc-hh---HHHHHHHHHhcCc
Confidence 5555555555554 5667777777777665 33 6666666666665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00026 Score=50.74 Aligned_cols=97 Identities=18% Similarity=0.129 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 416 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l 416 (490)
+..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|.+.++...+... .+...+..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-------DNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------cchhHHHHH
Confidence 34455666667777777777777766422 2335556666667777777777777777776651 234566677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
...+...|+++.|...++...+..|
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHccCC
Confidence 7777777777777777777665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00053 Score=51.78 Aligned_cols=98 Identities=10% Similarity=0.045 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHH
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRV-AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITL 273 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 273 (490)
..+...+.+.|++++|...|+.+.+.... +.....+..+..++.+.|++++|...|+.+....... ....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444555555555555555555543100 1112334445555555555555555555554432111 12334444455
Q ss_pred HHhcCChhHHHHHHHHHHHhC
Q 011226 274 YGQTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ 294 (490)
+...|+.++|...++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 555555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0061 Score=52.35 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 011226 234 NLASIYVEAGLFEKAERALKELENRNAHRDLSAY---QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 310 (490)
Q Consensus 234 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (490)
.....+...|++++|.+.|+.+....+.. .... -.++.++.+.+++++|...+++..+..+.-...-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34455566677777777777776643322 1111 2345566677777777777777776655433333433333332
Q ss_pred h--c---------------CCh---hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 011226 311 N--L---------------KDL---PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK 370 (490)
Q Consensus 311 ~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 370 (490)
. . .|. ..|...|+.+.+. |-...-..+|...+..+... =..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHH
Confidence 1 1 111 2233444444433 33333344555544444431 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
.--.+..-|.+.|.+..|+.-++.+++.... ..........++.+|...|..++|..+...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPD----TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124556688999999999999999988611 11235667788899999999999988776553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.9e-05 Score=53.70 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=49.8
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcC
Q 011226 347 EGRLENAEELKERARRRGAD-PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEK 424 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 424 (490)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++ .+.+ | +......+..+|.+.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHHHHHHhC
Confidence 46777777777777765331 2334444567777777777777777777 3332 3 2344455567777777
Q ss_pred ChHHHHHHHHH
Q 011226 425 DVDGAEGFLEI 435 (490)
Q Consensus 425 ~~~~a~~~~~~ 435 (490)
++++|+++|++
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 77777777765
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00011 Score=52.43 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCC--------CCcHHHHHHHHHHCCCCCCHhhHH
Q 011226 127 GSLLNCYCKELMTEKAEALLEKMKELNL-GFSSMPFNSLMTLYAKTGH--------PEKIPAIIQEMKASSIMPDSYTYN 197 (490)
Q Consensus 127 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~p~~~~~~ 197 (490)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- .-+.+.+|++|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455566666888888888888888888 8888888888887766432 235567778888888888888888
Q ss_pred HHHHHHHH
Q 011226 198 VWMRALAA 205 (490)
Q Consensus 198 ~l~~~~~~ 205 (490)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87776643
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00035 Score=64.05 Aligned_cols=123 Identities=10% Similarity=-0.017 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhH
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENR--NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY 302 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 302 (490)
.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|...|..+.++.+++.=..-|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 5666667777777777777788888888777654 12122345568888888888888888888877778888888888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
+.|++.+.+.|++..|.++...|...+.-.+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888877666555666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.002 Score=57.10 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=59.3
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHHHHh----cCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CHH
Q 011226 302 YLNMIQVLVNL-KDLPGAEKCFKEWES----GCA-TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP-----NAK 370 (490)
Q Consensus 302 ~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~ 370 (490)
+..+...|... |+++.|.+.|++..+ .+. ..-..++..+...+.+.|++++|.++|+++...-... +..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444555555 677777777776532 121 0012344556667777777888887777776532211 111
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC--HHHHHHHHHHHH
Q 011226 371 -TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFE 421 (490)
Q Consensus 371 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 421 (490)
.|...+-++...|+.-.|.+.+++....... +..+ ......|+.+|-
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~----F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPS----FASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT----STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHHH
Confidence 1222333555667777777777777655311 2122 344555565553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=61.08 Aligned_cols=99 Identities=16% Similarity=0.066 Sum_probs=87.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 378 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
-+.+.+++++|+..|.++++.. .-|...|..-..+|.+.|.++.|++-.+..+..+| -...+|..|..+|..
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHc
Confidence 3567899999999999999986 13577778888999999999999999999999998 889999999999999
Q ss_pred cCCCcHHHHHHHhhCCCCCCHHHHHHH
Q 011226 458 AGRTSPVMLRRLKMEKVEVSEASKKLL 484 (490)
Q Consensus 458 ~g~~~~~~~~~m~~~~~~p~~~~~~~l 484 (490)
.|++.+++...-+...+.|+..+++-=
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHH
Confidence 999999998888889999999987543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0089 Score=49.98 Aligned_cols=169 Identities=19% Similarity=0.235 Sum_probs=88.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc
Q 011226 235 LASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 312 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (490)
....+...|++++|.+.|+.+....+.. .....-.++.++.+.|+++.|...++.+.+..|.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 4445556666777777776666543211 12334445666666777777777777766665543333232222222211
Q ss_pred C-------------ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011226 313 K-------------DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 379 (490)
Q Consensus 313 ~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (490)
. ....|... +..++.-|-......+|...+..+.+. =...--.+..-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 1 11222223 333444444445555565555555432 011112345678
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----HHHHHHHHHHHHhcCChHHHH
Q 011226 380 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~ 430 (490)
.+.|.+..|..-++.+++.- |+ ......++.++.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~y--------p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENY--------PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHS--------TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC--------CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88999999999999998886 54 345577788888888877554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00042 Score=58.78 Aligned_cols=125 Identities=20% Similarity=0.196 Sum_probs=84.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011226 307 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 386 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 386 (490)
.-+.+.+++.+|...|.+.+...++ |.+.|..-..+|++.|.++.|++=.+..+..+.. ...+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3456677888888888888877666 7777777778888888888888887777764322 3457777778888888888
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHH-HhcCChH---HHHHHHHHHHHcCC
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF-EQEKDVD---GAEGFLEILKKAVD 441 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~---~a~~~~~~~~~~~~ 441 (490)
+|++.|++.++.. |+..+|..=+... .+.+... .+..-++.....+.
T Consensus 167 ~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~ 217 (304)
T KOG0553|consen 167 EAIEAYKKALELD--------PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGA 217 (304)
T ss_pred HHHHHHHhhhccC--------CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccC
Confidence 8888888888776 7766665444433 3333333 33344444444444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.7e-05 Score=42.36 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELN 153 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 153 (490)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666766777777777766666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0094 Score=51.21 Aligned_cols=178 Identities=12% Similarity=0.066 Sum_probs=111.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 198 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF---SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 198 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
.....+...|++++|...|+.+... .|-+.... -.++.++.+.+++++|...+++..+..+......+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3455567789999999999999886 44444433 456778888999999999999988765443333444444443
Q ss_pred Hh--c---------------CC---hhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 011226 275 GQ--T---------------GN---LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI 334 (490)
Q Consensus 275 ~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (490)
+. . .| ..+|+..|+.+++..|. . .-..+|...+..+...- .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~--S-------------~ya~~A~~rl~~l~~~l----a 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN--S-------------QYTTDATKRLVFLKDRL----A 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC--C-------------hhHHHHHHHHHHHHHHH----H
Confidence 31 1 11 23455666666665432 2 22344444333332210 0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRR--GADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
..-..+.+.|.+.|.+..|..-++.+++. +..........++.+|...|..++|......+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11124567788899999999999999874 222334556677888999999998888776543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.001 Score=51.46 Aligned_cols=91 Identities=10% Similarity=-0.023 Sum_probs=49.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH
Q 011226 340 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419 (490)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 419 (490)
+...+...|++++|..+|+.+...++. +..-|-.|..++-..|++++|+..|..+....+ .|+..+..+..+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-------ddp~~~~~ag~c 112 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-------DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCchHHHHHHHH
Confidence 344445556666666666655553222 333444455555555666666666666555541 335555555556
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 011226 420 FEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~~~ 438 (490)
+...|+.+.|.+.|+.++.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.002 Score=57.19 Aligned_cols=156 Identities=13% Similarity=-0.001 Sum_probs=75.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHH--HHHhcCChhhHHHHHHHHHhcCCCCChh-hHHHHHH------
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ--VLVNLKDLPGAEKCFKEWESGCATYDIR-VTNVMIG------ 342 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~------ 342 (490)
.++.-.|+.++|.++--.+.+.... ..+...++ ++...++.+.+...|++....++..... .-....+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 3455567777777766665553321 22233333 3335667777777777766654431111 0011111
Q ss_pred ----HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH---HHH--HhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHH
Q 011226 343 ----AYAKEGRLENAEELKERARRRGADPNAKTWEIFS---DYY--LRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SET 412 (490)
Q Consensus 343 ----~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~---~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~ 412 (490)
-..+.|++..|.+.|.+.+.. .|+..--+..+ ++. .+.|+.++|+.--++..... +. ...
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~i--dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--------~syika 323 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNI--DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--------SSYIKA 323 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcC--CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--------HHHHHH
Confidence 123455666666666665543 33322222111 111 14456666666655555543 22 233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
+..-..++.-.++|++|.+-++++.+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444555566666666666665544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00088 Score=59.04 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL-YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
+|..+++..-+.+..+.|..+|++..+.+. .+...|...... |...++.+.|.++|+...+..+ .+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 456666666666667777777777664321 233334333333 2224555557777776665533 2445556666666
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYD---IRVTNVMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
...|+.+.|..+|+..... ..++ ...|...+..-.+.|+++.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6667777777777766554 2111 236666666666666666666666666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.027 Score=50.95 Aligned_cols=136 Identities=9% Similarity=-0.079 Sum_probs=85.8
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSL 129 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 129 (490)
.+|-+..+|..++..|..++..++..+++++|..-- +.-..+|...+..-....++.....+|.+.....-+...|..-
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lY 115 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLY 115 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHH
Confidence 456678889999999999999999999999986543 2334456666766666788999999998887755677778777
Q ss_pred HHHHHHcCCHH------HHHHHHHHHHh-CCCCCC-cchHHHHHHHHH---hcCCC------CcHHHHHHHHHH
Q 011226 130 LNCYCKELMTE------KAEALLEKMKE-LNLGFS-SMPFNSLMTLYA---KTGHP------EKIPAIIQEMKA 186 (490)
Q Consensus 130 i~~~~~~~~~~------~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---~~~~~------~~a~~~~~~~~~ 186 (490)
+.-..+.++.- ...+.|+-... .++.|- ...|+..+..+- ..|.| +...+.|.+|..
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 76544433211 12233333333 234343 345555555433 23444 445566666654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0027 Score=49.11 Aligned_cols=94 Identities=10% Similarity=-0.073 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 127 GSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 127 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
-.+...+...|++++|.++|+.+...++ -+..-|-.|..++-..|++++|+..|.......+ -|+..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3344455567777777777777766553 3445555666666667777777777777766543 2556666677777777
Q ss_pred CChhHHHHHHHHHHHC
Q 011226 207 NDISGAERVIEEMKRD 222 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~ 222 (490)
|+.+.|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777776665
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00047 Score=49.24 Aligned_cols=67 Identities=7% Similarity=0.158 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 243 GLFEKAERALKELENRNA-HRDLSAYQFLITLYGQTG--------NLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.++..+
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 444444444444444444 344444444444333321 1123334444444444444444444444443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.9e-05 Score=52.79 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=6.5
Q ss_pred HHHHHhcCChhHHHHHH
Q 011226 341 IGAYAKEGRLENAEELK 357 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~ 357 (490)
..+|.+.|++++|..++
T Consensus 32 a~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33333333333333333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0034 Score=60.22 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+...|..+.......|++++|...+++++... |+...|..+...+...|+.++|.+.++++..++|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44566666555556788888888888888876 7777788888888888888888888888887776
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00029 Score=47.10 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEK-DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 441 (490)
+...|..+...+...|++++|+..|++.++.. |+ ...|..+..++...| ++++|.+.+++.++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677888888899999999999999999987 54 778888888899998 79999999999888764
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00029 Score=46.36 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+...+.+.|++++|++.|+++++.. | +...+..+..++...|++++|...|+++++..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4567889999999999999999987 5 478889999999999999999999999999887
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.1e-05 Score=41.23 Aligned_cols=29 Identities=38% Similarity=0.612 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0027 Score=51.54 Aligned_cols=88 Identities=8% Similarity=0.027 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHH
Q 011226 229 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI 306 (490)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (490)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+.....+. +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34455666666667777777777776665432221 245556666666666666666666666554332 233344444
Q ss_pred HHHHhcCChhh
Q 011226 307 QVLVNLKDLPG 317 (490)
Q Consensus 307 ~~~~~~~~~~~ 317 (490)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555554433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0034 Score=55.65 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=47.8
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHc----cCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC-----ch
Q 011226 232 FSNLASIYVEA-GLFEKAERALKELENR----NAH-RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA-----NI 300 (490)
Q Consensus 232 ~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~ 300 (490)
+..+...|... |++++|.+.|++..+. +.. .-...+..+...+.+.|++++|.++|+++.......+ ..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444455555 6666666666665431 100 0123344556666777777777777776654322111 11
Q ss_pred -hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 011226 301 -SYLNMIQVLVNLKDLPGAEKCFKEWESG 328 (490)
Q Consensus 301 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (490)
.|...+-++...||...|.+.++.....
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1222333455566777777777766544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0011 Score=53.55 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
++..+...+...|++++|...++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0039 Score=46.45 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=21.3
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011226 170 KTGHPEKIPAIIQEMKASSIMPD--SYTYNVWMRALAAVNDISGAERVIEEMKR 221 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 221 (490)
..|+.++|+.+|++....|+... ...+-.+...+...|++++|..+++....
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444433322 11222333344444444444444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00023 Score=47.37 Aligned_cols=62 Identities=29% Similarity=0.348 Sum_probs=51.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 011226 380 LRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (490)
...|++++|+++|+++.... | +...+..+..+|.+.|++++|..+++++....+ .++..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP-DNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT-THHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CHHHHHHH
Confidence 56799999999999999987 5 688888999999999999999999999999887 44444443
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0046 Score=52.99 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=74.2
Q ss_pred HHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC
Q 011226 291 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG---RLENAEELKERARRRGADP 367 (490)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p 367 (490)
...++. |...|..|...|...|+.+.|..-|....+..++ |+..+..+..++.... ...++..+|+++...+..
T Consensus 149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~- 225 (287)
T COG4235 149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA- 225 (287)
T ss_pred HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-
Confidence 344443 6677888888888888888888888887766444 6666666666555432 345677888888876433
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|..+...+...+...|++.+|...|+.|++..
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 55566666677788888888888888888876
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00031 Score=56.86 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=73.2
Q ss_pred HHHHhhcCCCCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHH
Q 011226 110 ENYFVDLPETSKNHLTYGSLLNCYCKE-----LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEM 184 (490)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 184 (490)
...|+.......+..+|..++..|.+. |.++=....+..|.+.|+..|..+|+.|++.+=+ |.+-
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv--------- 103 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV--------- 103 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------
Confidence 344444433335667777777777643 6677777788888889998999999998887654 2221
Q ss_pred HHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCC
Q 011226 185 KASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL 244 (490)
Q Consensus 185 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (490)
|.. .+.++..- --.+-+-|++++++|...| +-||..++..+++.+++.+.
T Consensus 104 ------p~n-~fQ~~F~h--yp~Qq~c~i~lL~qME~~g-V~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 ------PRN-FFQAEFMH--YPRQQECAIDLLEQMENNG-VMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------ccc-HHHHHhcc--CcHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhccccH
Confidence 111 11111111 1124556777888888877 88888888888888776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.027 Score=50.36 Aligned_cols=214 Identities=15% Similarity=0.053 Sum_probs=133.2
Q ss_pred CCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHhCCCCCchhH-
Q 011226 227 ADWTTFSNL-ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT--LYGQTGNLSEVYRIWRSLRLAFPNTANISY- 302 (490)
Q Consensus 227 ~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 302 (490)
|...++..+ ..++.-.|+.++|.+.--...+... ...+...++ ++.-.++.+.+...|++.+..++ +-..-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHH
Confidence 444455443 3556678999999998888776432 223333443 34456888999999999877554 32211
Q ss_pred --HH----------HHHHHHhcCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 303 --LN----------MIQVLVNLKDLPGAEKCFKEWESGC---ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 303 --~~----------l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
.. -.+-..+.|++..|.+.|.+.+... ..++...|........+.|+..+|+.--++..+.
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---- 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---- 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----
Confidence 11 1233567899999999999987643 4556667777777888999999999999988874
Q ss_pred CHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011226 368 NAKT---WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG 444 (490)
Q Consensus 368 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 444 (490)
|..- |..-..++...++|++|.+-++...+...+ .-...++.....++.+..+.+ -..++-........+.
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-----~e~r~~l~~A~~aLkkSkRkd-~ykilGi~~~as~~ei 390 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-----CEIRRTLREAQLALKKSKRKD-WYKILGISRNASDDEI 390 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cchHHHHHHHHHHHHHhhhhh-HHHHhhhhhhcccchh
Confidence 3322 222233556678899999999998888621 012444444444454433322 2233333333333356
Q ss_pred HHhHHHHHHHH
Q 011226 445 VEVFEPLIRTY 455 (490)
Q Consensus 445 ~~~~~~l~~~~ 455 (490)
..+|..+.-.+
T Consensus 391 kkayrk~AL~~ 401 (486)
T KOG0550|consen 391 KKAYRKLALVH 401 (486)
T ss_pred hhHHHHHHHHh
Confidence 66676555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0046 Score=50.02 Aligned_cols=101 Identities=14% Similarity=0.031 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE 411 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~ 411 (490)
...|..+...+...|++++|...|++.......| ...++..+...+...|++++|+..+++...... ....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-------~~~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-------FLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CcHH
Confidence 4556677777888899999999999887653222 234677788888899999999999999887641 2345
Q ss_pred HHHHHHHHHH-------hcCChHHHH-------HHHHHHHHcCC
Q 011226 412 TIRTFMRHFE-------QEKDVDGAE-------GFLEILKKAVD 441 (490)
Q Consensus 412 ~~~~l~~~~~-------~~g~~~~a~-------~~~~~~~~~~~ 441 (490)
.+..+...+. ..|+++.|. .++++.....|
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5556665665 777777554 44445555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0056 Score=58.73 Aligned_cols=138 Identities=11% Similarity=0.075 Sum_probs=92.1
Q ss_pred cCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC--------ChhhHHHHHHHH
Q 011226 259 NAHRDLSAYQFLITLYGQT-----GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK--------DLPGAEKCFKEW 325 (490)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 325 (490)
..+.+...|...+++.... ++...|..+|++..+..+. ....+..+..++.... +...+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445667777777765432 2356788888888775543 2233433333332211 122333333333
Q ss_pred Hhc-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 326 ESG-CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 326 ~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
... ....+...|..+.......|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++.....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 222 12335577777777777789999999999999986 4688889999999999999999999999999887
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0003 Score=46.86 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=44.0
Q ss_pred hccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHH
Q 011226 66 RDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSL 129 (490)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 129 (490)
.+.|++++|++.|+.+.... +-+......+..++.+.|++++|.++++.+....|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45678888888888887665 3366666677788888888888888888887766664444433
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00051 Score=60.69 Aligned_cols=264 Identities=14% Similarity=-0.004 Sum_probs=162.4
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhhCCHHHHHHHHhhcCC-------CCCCHhHHHHHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVS----DQAIHLDLVAKVQGIDAAENYFVDLPE-------TSKNHLTYGSLL 130 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~li 130 (490)
-..+++.|+....+.+|+...+.|. -|.. +|..+.++|.-.+++++|++....-.. .--...+...|-
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 3468999999999999999999883 3443 566677788888899999887543211 111112223344
Q ss_pred HHHHHcCCHHHHHHHHHH----HHhCCC-CCCcchHHHHHHHHHhcCCC--------------------CcHHHHHHHHH
Q 011226 131 NCYCKELMTEKAEALLEK----MKELNL-GFSSMPFNSLMTLYAKTGHP--------------------EKIPAIIQEMK 185 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~ 185 (490)
..+--.|.+++|+-.-.+ ..+.|- ......+..+...|...|+. +.|.++|.+=.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 444455677766543222 112110 12234455566666655431 22334433221
Q ss_pred ----HCCC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHH----HCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 186 ----ASSI-MPDSYTYNVWMRALAAVNDISGAERVIEEMK----RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 186 ----~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
+.|- -.....|..|.+.|.-.|+++.|+...+.-. +.|.-......+..+.++++-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 0122446666667777889999988765533 334223345567889999999999999999988754
Q ss_pred HccC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----h-CCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011226 257 NRNA-----HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL----A-FPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE 326 (490)
Q Consensus 257 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (490)
...+ .....+...|...|.-..++.+|+.++..-.. . ...-....+.+|..++...|..++|..+...-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3211 12345666788888888889999988765332 1 112244577889999999999999988776643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.01 Score=44.23 Aligned_cols=109 Identities=18% Similarity=0.089 Sum_probs=58.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHH
Q 011226 340 MIGAYAKEGRLENAEELKERARRRGADPNA--KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 417 (490)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 417 (490)
+..++-..|+.++|+.+|++....|..... ..+-.+...+...|++++|..++++..... |+..+ +......+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~--~~~l~~f~A 82 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDEL--NAALRVFLA 82 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccc--cHHHHHHHH
Confidence 344555667777777777777666654332 234445556666777777777777666653 00000 112222233
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 418 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
.++...|+.++|.+.+-.... ++...|..-+..|.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 355666777777666655443 23335555555544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.055 Score=48.09 Aligned_cols=291 Identities=15% Similarity=0.076 Sum_probs=189.8
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH--HhcCCCCcHHHHHHHHHHCCCCCCHhhHH---
Q 011226 125 TYGSLLNCYCK--ELMTEKAEALLEKMKELNLGFSSMPFNSLMTLY--AKTGHPEKIPAIIQEMKASSIMPDSYTYN--- 197 (490)
Q Consensus 125 ~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--- 197 (490)
-|..|-.++.. .|+-..|.++-.+-... +.-|....-.|+.+- .-.|+++.|.+-|+.|.. |+.|-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 45555555443 47777887776654422 223444455555443 347999999999999986 333322
Q ss_pred -HHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc-CCCCHH--HHHHHHHH
Q 011226 198 -VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN-AHRDLS--AYQFLITL 273 (490)
Q Consensus 198 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~--~~~~l~~~ 273 (490)
.|.-..-+.|+.+.|.++-+..-.. -+.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 2333345788999999998888775 45555677889999999999999999998765532 233321 11222222
Q ss_pred HHh---cCChhHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 011226 274 YGQ---TGNLSEVYRIWRSLRLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 349 (490)
Q Consensus 274 ~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (490)
-.. ..+...|...-.+..+ ..||..-- ..-..++.+.|+..++-.+++.+-+..+.|++ ...|....-
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i------a~lY~~ar~ 307 (531)
T COG3898 236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI------ALLYVRARS 307 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH------HHHHHHhcC
Confidence 111 2344555555444433 44554422 33457788999999999999999887766653 233444444
Q ss_pred hhHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh-cCCh
Q 011226 350 LENAEELKERARR-RGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ-EKDV 426 (490)
Q Consensus 350 ~~~a~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~ 426 (490)
-+.+..-+++..+ ..++|| ..+...+..+-...|++..|..--+...+.. |....|..|.+.-.. .|+-
T Consensus 308 gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~--------pres~~lLlAdIeeAetGDq 379 (531)
T COG3898 308 GDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA--------PRESAYLLLADIEEAETGDQ 379 (531)
T ss_pred CCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC--------chhhHHHHHHHHHhhccCch
Confidence 4555555555543 224444 4566667778888999999988888877766 888888888876654 4999
Q ss_pred HHHHHHHHHHHHc
Q 011226 427 DGAEGFLEILKKA 439 (490)
Q Consensus 427 ~~a~~~~~~~~~~ 439 (490)
.++...+.+....
T Consensus 380 g~vR~wlAqav~A 392 (531)
T COG3898 380 GKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999888764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.064 Score=47.99 Aligned_cols=84 Identities=25% Similarity=0.268 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (490)
+.+..+.-+...|+...|.++-.+. .+ |+...|...+.+++..++|++-.++-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455555566665555554443 12 4556666666666666666655544321 113355666666666
Q ss_pred hcCCHHHHHHHHHH
Q 011226 381 RNGDMKLAVDCLEK 394 (490)
Q Consensus 381 ~~g~~~~A~~~~~~ 394 (490)
+.|+..+|..++.+
T Consensus 249 ~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 249 KYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHh
Confidence 66666666666555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.031 Score=44.17 Aligned_cols=128 Identities=14% Similarity=0.106 Sum_probs=84.6
Q ss_pred CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHH
Q 011226 296 NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG---ADPNAKTW 372 (490)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~ 372 (490)
.|+...-..|..++...|+..+|...|.+....-...|....-.+.++....+++..|...++.+-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 345555556677777777777777777777766666666677777777777777777777777776642 1233 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011226 373 EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 433 (490)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 433 (490)
-.+.+.+...|.+.+|..-|+...... |+...-......+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--------PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--------CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 455667777777777777777777765 66555555555666777666655433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.073 Score=48.38 Aligned_cols=216 Identities=10% Similarity=0.026 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHccCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch-----hHHHHHHHHH-h--
Q 011226 244 LFEKAERALKELENRNAH----RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-----SYLNMIQVLV-N-- 311 (490)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~-~-- 311 (490)
+.+++..+-+.+....+. .=..+|..++...++.++...|-+.+.-+....+..... +-..+-+..+ .
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~ 353 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDE 353 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchH
Confidence 455555555544332111 113567777788888888888888877666543322111 0011112222 1
Q ss_pred -cCChhhHHHHHHHHHhcCCCCChhhHHHHH---HHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHH----HHHH--
Q 011226 312 -LKDLPGAEKCFKEWESGCATYDIRVTNVMI---GAYAKEGR-LENAEELKERARRRGADPNAKTWEIFS----DYYL-- 380 (490)
Q Consensus 312 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~----~~~~-- 380 (490)
..+...-..+|..+...++. .......|+ .-+-+.|. -++|+.+++.+.+.. .-|..+-|.+. .+|.
T Consensus 354 ~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qa 431 (549)
T PF07079_consen 354 SYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQA 431 (549)
T ss_pred HHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHH
Confidence 11112223334444333322 111222222 23444454 566677776666531 11222222221 1222
Q ss_pred -hcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 381 -RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH--FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 381 -~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
....+.+-+.+-+-+.+.|++|.. ..+...-+.|.++ +...|++.++.-.-..+.+.. |++.+|..+.-++..
T Consensus 432 Ls~~~~~rLlkLe~fi~e~gl~~i~--i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--PS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 432 LSMHAIPRLLKLEDFITEVGLTPIT--ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--PSPQAYRLLGLCLME 507 (549)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccc--ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHH
Confidence 223344445554555555554311 1123344444432 345666666655544444443 466666666666666
Q ss_pred cCCCcHHH
Q 011226 458 AGRTSPVM 465 (490)
Q Consensus 458 ~g~~~~~~ 465 (490)
..++.+|.
T Consensus 508 ~k~Y~eA~ 515 (549)
T PF07079_consen 508 NKRYQEAW 515 (549)
T ss_pred HhhHHHHH
Confidence 55554443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.057 Score=45.27 Aligned_cols=136 Identities=9% Similarity=0.011 Sum_probs=95.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH----
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS---- 376 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~---- 376 (490)
..+.++..+.-.|.+.-...++.++.+..++.++.....|++.-.+.|+.+.|...|++..+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666777777777788888888877766778888888888888888888888888776533333444443333
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011226 377 -DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443 (490)
Q Consensus 377 -~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 443 (490)
..|.-.+++..|...+.++..... .++...+.-.-+..-.|+..+|.+.++.|+...|.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-------~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-------RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-------CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 235566788888888888887761 234444444445556788999999999999887644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0056 Score=53.01 Aligned_cols=101 Identities=10% Similarity=0.066 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS 410 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~ 410 (490)
..|...+..+.+.|++++|...|+.+.+.. |+. ..+..+...|...|++++|...|+.+.+... +. ....
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP--~s--~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP--KS--PKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CC--cchh
Confidence 345555555566788999999998888753 333 4566777888889999999999999887751 00 0124
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..+..++..+...|+.+.|..+|+++++..|
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5556667778888999999999999888776
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0056 Score=51.03 Aligned_cols=150 Identities=14% Similarity=0.045 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 139 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
.+..+++|++-.. .+-+.++..+.-.+.+.-...++++.++...+.++.....|++...+.||.+.|...|+.
T Consensus 165 ~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3556666665443 345666677777777777788888887766566777777788888888888888888887
Q ss_pred HHHCCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011226 219 MKRDGRVAADWTTFS-----NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 219 ~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (490)
..+.. ...+..+++ .....|.-++++..|...+.++..... .|+...|.-.-+..-.|+..+|++.++.|...
T Consensus 238 vek~~-~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 238 VEKVT-QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHH-hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66543 333333333 333445566777888888877766433 34444554444455567788888888888775
Q ss_pred CCCC
Q 011226 294 FPNT 297 (490)
Q Consensus 294 ~~~~ 297 (490)
.+.|
T Consensus 316 ~P~~ 319 (366)
T KOG2796|consen 316 DPRH 319 (366)
T ss_pred CCcc
Confidence 4433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.003 Score=56.02 Aligned_cols=138 Identities=14% Similarity=0.050 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHH----HhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCC-CCCH
Q 011226 300 ISYLNMIQVLVNLKDLPGAEKCFKEW----ESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARR----RGA-DPNA 369 (490)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~p~~ 369 (490)
..|..|.+.|.-.|+++.|+...+.- .+.|-+. ....+..|..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777788999988766552 2222211 234667788888888999999988877543 221 1223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
.+..++...|.-..++++|+.++.+-+...-.-+ +..-....+.+|..+|...|..+.|..+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-DRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455677777777889999988876554310000 0113467788999999999999999988777655
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.017 Score=49.67 Aligned_cols=110 Identities=14% Similarity=0.043 Sum_probs=87.3
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC
Q 011226 323 KEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTG 399 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 399 (490)
+.-...++. |...|..|...|...|+.+.|..-|.+..+.. .++...+..+..++.... ...++..+|++++...
T Consensus 146 e~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 333444565 88999999999999999999999999999852 235566666666654332 4568999999999987
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
. -|+.....|...+...|++.+|...|+.|++..|
T Consensus 224 ~-------~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 224 P-------ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred C-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 2 4577778888899999999999999999999987
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=43.80 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELEN 257 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~ 257 (490)
..+|..+...+...|++++|+..|++.++. .+.+...|..+..+|...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344555555555555555555555555554 3445555555555555555 45555555555443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=43.15 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=32.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011226 200 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 257 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 257 (490)
...+...|++++|...|+++++. .+-+...+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666666654 344555555666666666666666666665554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.054 Score=42.88 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=80.9
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CCHHHH
Q 011226 189 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-RDLSAY 267 (490)
Q Consensus 189 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 267 (490)
+-|+...-..|..+....|+..+|...|++... |-+.-|....-.+.++....+++..|...++++.+-... .+..+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 346666666677777777777777777777776 336666776667777777777777777777777653311 112234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHH
Q 011226 268 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 321 (490)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (490)
-.+.+.+...|.+.+|...|+......+.|....| ....+.+.|+.+++..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHH
Confidence 45566777777777777777777765444433332 23344556655555433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.17 Score=48.61 Aligned_cols=178 Identities=10% Similarity=-0.009 Sum_probs=85.2
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhC-CCCCChh--hH----HHHHHHHHhhCCHHHHHHHHhhcCCCCCCHh
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKR-GMNKTVS--DQ----AIHLDLVAKVQGIDAAENYFVDLPETSKNHL 124 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~--~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 124 (490)
.|.+..|..+...-...-.++-|...|-+.... |++.-.. +. ..-...-+--|++++|.+++-.+...
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr----- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh-----
Confidence 355555555555445555555555555544222 2111000 00 00011222347777887777666541
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNL--GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRA 202 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 202 (490)
...|..+.+.|+|-...++++.--. +. ..-...|+.+...++....|++|.+.|..-.. ....+.+
T Consensus 764 --DLAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ec 831 (1189)
T KOG2041|consen 764 --DLAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIEC 831 (1189)
T ss_pred --hhhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHH
Confidence 2234555666776666665543110 00 01124566666666666666666666653321 1124455
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011226 203 LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 252 (490)
+.+..++++-+.+.+. .+.+....-.+...+.+.|.-++|.+.+
T Consensus 832 ly~le~f~~LE~la~~------Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 832 LYRLELFGELEVLART------LPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHhhhhHHHHHHh------cCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 5555555554443333 3333344445555666666666555554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0088 Score=48.71 Aligned_cols=31 Identities=0% Similarity=-0.094 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHh
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVN 311 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (490)
+-|++++++|...|+.||..++..+++.+.+
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 3445555555555555555555555555533
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.2 Score=48.25 Aligned_cols=337 Identities=14% Similarity=0.048 Sum_probs=177.6
Q ss_pred CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhH------------HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 011226 87 NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLT------------YGSLLNCYCKELMTEKAEALLEKMKELNL 154 (490)
Q Consensus 87 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 154 (490)
.|.+..|..+.+.....-.++.|...|-+.... +.... -.+=+.+ --|++++|.++|-++-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh-
Confidence 477777888777777777777777777666541 11111 1111122 2377888888876665543
Q ss_pred CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHH
Q 011226 155 GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS 233 (490)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (490)
..|..+.+.|+|-.+.++++.--.. .-..-...|+.+...++....|++|.+.|..-... .
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e 826 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------E 826 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------H
Confidence 3455666677776666665421100 00011345777777777777788887777654221 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC
Q 011226 234 NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 313 (490)
Q Consensus 234 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (490)
..+.++.+..++++-..+...+. -+....-.+.+++.+.|.-++|.+.+-+-. .| ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHH
Confidence 35666666666666555555443 355566778888888888888887765431 12 13466777777
Q ss_pred ChhhHHHHHHHHHhcCCC-----------CChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHHHHHHHH
Q 011226 314 DLPGAEKCFKEWESGCAT-----------YDIRVTNVMIGAYAKEGRLENAEELKERARR----RGADPNAKTWEIFSDY 378 (490)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~~~l~~~ 378 (490)
++.+|.++-+...-..+. .+..+ ..-|..+.+.|+.-+|-+++.+|.+ ++.+|-..---.++.+
T Consensus 893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 887777766543211000 00011 1234556677777777777777754 2333222111111111
Q ss_pred H---------------HhcCCHHHHHHHHHHHHhcCCCC--CCCCc-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 011226 379 Y---------------LRNGDMKLAVDCLEKAIDTGRGD--GGKWV-PSSETIRTFMRHFEQEKDVDGAEGFLEILKKA- 439 (490)
Q Consensus 379 ~---------------~~~g~~~~A~~~~~~~~~~~~~~--~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 439 (490)
+ -..|..++|..+++...-..... ...++ .....|..|..--...|.++.|...--.+...
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 1 12355555655444332221000 00000 12233334444445667777777643333331
Q ss_pred CCCCCHHhHHHHHHHHHhcCC
Q 011226 440 VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+.-|-..+|..|.-+-+....
T Consensus 1052 d~lpP~eiySllALaaca~ra 1072 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLLALAACAVRA 1072 (1189)
T ss_pred hcCCHHHHHHHHHHHHhhhhh
Confidence 222556677766655554444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.11 Score=46.96 Aligned_cols=165 Identities=18% Similarity=0.042 Sum_probs=101.5
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCCCC----C-CHhHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCcchHHH
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPETS----K-NHLTYGSLLNCYCK---ELMTEKAEALLEKMKELNLGFSSMPFNS 163 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (490)
+...++-.|-...+++...++.+.+...+ + +..+-....-++.+ .|+.++|++++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556777888888888888887731 1 12222234445556 7888999999888666556688888888
Q ss_pred HHHHHHh----c-----CCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChh----HHHHHH----HHHHHCCC--
Q 011226 164 LMTLYAK----T-----GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDIS----GAERVI----EEMKRDGR-- 224 (490)
Q Consensus 164 l~~~~~~----~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~----~a~~~~----~~~~~~~~-- 224 (490)
+...|-. . ...++|...|.+.-+. .||.++--.++..+...|... +..++- ..+.+.|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 7776643 1 2356777777766543 355443223333333344211 222222 22223331
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENR 258 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 258 (490)
...+...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2345556678889999999999999999999875
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.23 Score=48.23 Aligned_cols=325 Identities=15% Similarity=0.080 Sum_probs=158.9
Q ss_pred hcCCCCHHhHHH-----HHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhC---CHHHHHHHHhhcCCCC
Q 011226 49 SKKRVFKWEVGD-----TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQ---GIDAAENYFVDLPETS 120 (490)
Q Consensus 49 ~~~~~~~~~~~~-----ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 120 (490)
-|.+.+...|.. ++..+...+.+..|+++-+++...-..- ...|......+.+.. +-+.+..+-+++...-
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 377777777766 4778888999999999999884332222 445555555555542 2233333333443321
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC--------
Q 011226 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNL----GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS-------- 188 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 188 (490)
..-..|..+.+....+|+++-|..+++.=...+- -.+..-+...+.-+.+.|+.+-...++-.+...-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3345677788777789999999988765222210 0122334555666677777777777766654421
Q ss_pred --CCC-CHhhHHHHHH--------HHHHcCChhHHHHHH--HHHHHCCCCCCCHHHHHHHHHHHHHcCCHH---H-----
Q 011226 189 --IMP-DSYTYNVWMR--------ALAAVNDISGAERVI--EEMKRDGRVAADWTTFSNLASIYVEAGLFE---K----- 247 (490)
Q Consensus 189 --~~p-~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~----- 247 (490)
..| ....|..+++ .+.+.++-..+...| +.........+-........+.+.+..... +
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 011 1111211111 011112211111111 110000000111111122333343333211 1
Q ss_pred --HHHHHHHHHH-ccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 011226 248 --AERALKELEN-RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE 324 (490)
Q Consensus 248 --A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (490)
-+++.+.+.. .|......+.+--+.-+...|+-.+|.++-.+. --||...|-.=+.+++..+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 1111111111 111111222333344455566666666555444 345666666666666666666665554443
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011226 325 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLE 393 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (490)
.. ++.-|..++.+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++.-
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 22 234555566667777777777666654221 11 34556666666666665543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.012 Score=50.95 Aligned_cols=99 Identities=9% Similarity=0.114 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC--CCHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAH--RDLSAYQF 269 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ 269 (490)
.|...+....+.|++++|...|+.+++. .|.+ ...+..+...|...|++++|...|+.+.+.-.. .....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445567788888888877775 3333 345667777777778888888777777653221 12334444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCC
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFP 295 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (490)
+..++...|+.++|..+|+.+.+..+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 55566677777777777777776554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.12 Score=46.71 Aligned_cols=36 Identities=14% Similarity=-0.078 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011226 408 PSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG 444 (490)
Q Consensus 408 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 444 (490)
.+-..+.+++.++.-.|++++|.+.+++|....+ |.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~-~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP-PA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-cc
Confidence 5666778899999999999999999999998875 54
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.014 Score=43.99 Aligned_cols=92 Identities=10% Similarity=0.084 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG---------RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
..++..++.++++.|+.+....+++..-.-+ .++++...|+..+..+++.+|+..|++..|.++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555666666666665555554433221 4556668899999999999999999999999999998874
Q ss_pred -CCCCCHHhHHHHHHHHHhcCC
Q 011226 440 -VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 440 -~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+++.+...|..|++=....-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhcC
Confidence 444568899988887655544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.12 Score=43.21 Aligned_cols=177 Identities=13% Similarity=0.085 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC--chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 011226 267 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA--NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 344 (490)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (490)
.-.....+...|++++|...|+.+....+... ......++.++.+.|+++.|...++.+.+.-+.....-+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445567788999999999999888755322 2244567778888899999999988887765543333333333333
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHH
Q 011226 345 AKEGRLENAEELKERARRRGADPN-------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 417 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 417 (490)
+......... . ...| ...+..++.-|-...-..+|...+..+.+.- ...-..+.
T Consensus 88 ~~~~~~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l----------a~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL----------AEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred HHHHhCccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 2211111110 0 0011 1123334444444444555555444443321 01112356
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCCCc
Q 011226 418 RHFEQEKDVDGAEGFLEILKKAVDDL--GVEVFEPLIRTYAAAGRTS 462 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 462 (490)
..|.+.|.+..|..-++.+++.-|.. ...+...++.+|.+.|...
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 77999999999999999999976521 2346677888888888743
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0052 Score=41.47 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=49.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..|.+.+++++|+++++.++..+. .++..+.....++.+.|++++|.+.|+++.+.+|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-------DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 467888999999999999999871 3477778888899999999999999999998887
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.21 Score=44.67 Aligned_cols=280 Identities=13% Similarity=0.052 Sum_probs=138.5
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhhCCHHHHHHHHhhcCCCCCCHhHHH----HHHHHHHHcCCHHH
Q 011226 68 RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLV--AKVQGIDAAENYFVDLPETSKNHLTYG----SLLNCYCKELMTEK 141 (490)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~ 141 (490)
.|+-..|.++-.+..+. +..|..-...++.+- .-.|+++.|.+-|+.|.. |+.+-. .|.-.--+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 45666666555444211 122332233333322 234777777777777765 333322 22222334566666
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC-CCCCHhh--HHHHHHHH---HHcCChhHHHHH
Q 011226 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS-IMPDSYT--YNVWMRAL---AAVNDISGAERV 215 (490)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~--~~~l~~~~---~~~~~~~~a~~~ 215 (490)
|.+.-++.-..-. .-...+...+...+..|+|+.|+++++.-.+.. +.++..- -..|+.+- .-..|...|...
T Consensus 173 Ar~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 6666666555432 224556666667777777777777776554432 2333221 11222211 112244555555
Q ss_pred HHHHHHCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-
Q 011226 216 IEEMKRDGRVAADWT-TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA- 293 (490)
Q Consensus 216 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 293 (490)
-.+..+ ..|+.. .-..-...+.+.|+..++-.+++.+-+..+.|+.. . +..+.+.|+ .+..-++...+.
T Consensus 252 A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHHH
Confidence 444444 233322 12234566677777777777777777655555431 1 112233443 333333332221
Q ss_pred CCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHc
Q 011226 294 FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA-KEGRLENAEELKERARRR 363 (490)
Q Consensus 294 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~ 363 (490)
..+| +..+...+..+....|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+.++.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1222 3344455666666777777666655555443 344555555555433 347777777777776653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0057 Score=48.12 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH------HHHHh-hCCCCCCHHHHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM------LRRLK-MEKVEVSEASKKLL 484 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~------~~~m~-~~~~~p~~~~~~~l 484 (490)
....++..+...|+++.|...++.+...+| -|...|..++.+|...|+...++ ...+. +.|+.|++.+..+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 456677788899999999999999999999 99999999999999999955443 23333 56999999998887
Q ss_pred HHh
Q 011226 485 EAI 487 (490)
Q Consensus 485 ~~~ 487 (490)
.++
T Consensus 143 ~~i 145 (146)
T PF03704_consen 143 REI 145 (146)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.29 Score=44.62 Aligned_cols=373 Identities=11% Similarity=0.083 Sum_probs=197.5
Q ss_pred CCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC---------HHHHHHHHhh-cCCCC
Q 011226 51 KRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG---------IDAAENYFVD-LPETS 120 (490)
Q Consensus 51 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~-~~~~~ 120 (490)
.+.-+..+...+.+=...+++.....+|........ +...|...++-..+... +-+|-++.-. +.-.+
T Consensus 72 fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~ 149 (660)
T COG5107 72 FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEP 149 (660)
T ss_pred CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccc
Confidence 344556677777777778899999999999977764 45556666655554432 1222222222 11123
Q ss_pred CCHhHHHHHHHHH---H------HcCCHHHHHHHHHHHHhCCCCCCcchHH------HHHHHHH-h--cCC----CCcHH
Q 011226 121 KNHLTYGSLLNCY---C------KELMTEKAEALLEKMKELNLGFSSMPFN------SLMTLYA-K--TGH----PEKIP 178 (490)
Q Consensus 121 ~~~~~~~~li~~~---~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~l~~~~~-~--~~~----~~~a~ 178 (490)
.+...|+..+..+ - .+.++|...+.+.+++...+..=...|+ .=++-.. + .|+ +-.|.
T Consensus 150 ~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar 229 (660)
T COG5107 150 QSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSAR 229 (660)
T ss_pred cccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 3445566554432 2 2334455566677766542211111121 1111000 0 111 22444
Q ss_pred HHHHHHHH--CCCCC----CHhhH-----------HHHHHHHHHcC-----C--hhHHHHHHHHHHHCCCCCCCHHHHHH
Q 011226 179 AIIQEMKA--SSIMP----DSYTY-----------NVWMRALAAVN-----D--ISGAERVIEEMKRDGRVAADWTTFSN 234 (490)
Q Consensus 179 ~~~~~~~~--~~~~p----~~~~~-----------~~l~~~~~~~~-----~--~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (490)
..+++... .|+.. +..++ ..+|+--...| + .....-++++.... ++.....|--
T Consensus 230 ~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~d 307 (660)
T COG5107 230 QRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFD 307 (660)
T ss_pred HHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHH
Confidence 44554432 13211 12222 22232211111 1 11222345555554 5666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh--------------CC-----
Q 011226 235 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA--------------FP----- 295 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~----- 295 (490)
.-..+...++-+.|+...+.-... .|+. .-.+...|.-..+-+.+...|+...+. +.
T Consensus 308 ys~Y~~~isd~q~al~tv~rg~~~--spsL--~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e 383 (660)
T COG5107 308 YSEYLIGISDKQKALKTVERGIEM--SPSL--TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFE 383 (660)
T ss_pred HHHHHhhccHHHHHHHHHHhcccC--CCch--heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCcc
Confidence 666677778888888777653321 1221 111222333333333333333322110 00
Q ss_pred ----------CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 296 ----------NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 296 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
..-...|...+++..+..-++.|..+|.++.+.+ ..+++.++++++..++. |+...|..+|+--...
T Consensus 384 ~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~- 461 (660)
T COG5107 384 YSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK- 461 (660)
T ss_pred ccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-
Confidence 0012345556666667777788888888887776 66677777887776654 6777788888766553
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 365 ADPNAKTW-EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 365 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
-||...| +..+.-+...++-+.|..+|+..+..- ..+ ..+|..+|.--..-|+...+..+=+++.+.-|
T Consensus 462 -f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~-------~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 462 -FPDSTLYKEKYLLFLIRINDEENARALFETSVERL-------EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred -CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH-------HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 3444443 445556667788888888888665541 222 45778888777778888777777777776654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.002 Score=44.23 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
.+++.+...|...|++++|++.|++.++.. ...+...|+ ..++..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467788888999999999999999888651 100001133 56788999999999999999999999875
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0032 Score=42.48 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=58.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHHH
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEA 486 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~ 486 (490)
...|.+.++++.|.+++++++..+| .++..|.....++.+.|++.+++...-......|+......+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3578899999999999999999999 89999999999999999988877666666677888877665543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.074 Score=41.61 Aligned_cols=89 Identities=15% Similarity=0.003 Sum_probs=55.6
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 387 (490)
-+...|++++|..+|+-+.-.++. +...|..|..++-..+++++|...|......+.. |+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 344567777777777766655443 5556666666666677777777777666554332 34444455566667777777
Q ss_pred HHHHHHHHHhc
Q 011226 388 AVDCLEKAIDT 398 (490)
Q Consensus 388 A~~~~~~~~~~ 398 (490)
|...|+...+.
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 77777766653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.37 Score=43.25 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 310 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (490)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++-.. +-++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445666667777777777766553 26777777778888888887776654321 123467777788888
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011226 311 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 359 (490)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (490)
+.|+..+|..+...+ + +..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888877777776651 1 13456677777777777665433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.33 Score=46.39 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 228 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
+..+...+...+.+...+.-|-++|..|-+ ...+++.+...++|++|..+-+...
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc
Confidence 344555555556666777777888877754 2245667777888888887766553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.17 Score=48.21 Aligned_cols=219 Identities=11% Similarity=0.140 Sum_probs=103.9
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHH---------HHHHHhCCCCCCcchHHHHHHHHHhcCCCC--cHHHHHHHHHHCCCCC
Q 011226 123 HLTYGSLLNCYCKELMTEKAEAL---------LEKMKELNLGFSSMPFNSLMTLYAKTGHPE--KIPAIIQEMKASSIMP 191 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p 191 (490)
...+.+-+..|...|.+++|.++ |+.+.... .+...++..=.+|.+.++.. +...-++++++.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 33444555567777877777654 22222211 23334555556666655533 3333456677777777
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHH--ccCCCCH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS-----NLASIYVEAGLFEKAERALKELEN--RNAHRDL 264 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 264 (490)
+... +...++-.|++.+|-++|.+--.. .--...|+ -++.-|...|..++-..+.++-.+ .+++..
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP- 706 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRSGHE---NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP- 706 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHcCch---hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence 7643 345566677788877777653211 01111111 122333334443333333222111 011101
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH-----H-HHHhCC---CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 011226 265 SAYQFLITLYGQTGNLSEVYRIWR-----S-LRLAFP---NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIR 335 (490)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~-----~-~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (490)
.+....+...|+.++|..+.- + +.+.+. ..+..+...+...+-+...+..|-++|..|-+.
T Consensus 707 ---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 707 ---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred ---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 122334445566555554321 1 111111 122334444444455556666667777665332
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
..+++.....+++.+|..+-+...+
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCcc
Confidence 2455666667777777777666554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0049 Score=36.56 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 453 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 453 (490)
.++..+...|...|++++|.++|+++++..| .|...|..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhhh
Confidence 4678889999999999999999999999999 89998887764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.36 Score=41.61 Aligned_cols=145 Identities=10% Similarity=0.081 Sum_probs=75.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhH--HHHHHHHHHH
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLT--YGSLLNCYCK 135 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~li~~~~~ 135 (490)
-..-.......+++.+|...|+....... -+......+..+|...|+.+.|..++..++....+... ...-|..+.+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 33344456667777777777777766542 23445556667777777777777777777662222111 1122333444
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCCCcHHHHHHHHHHC--CCCCCHhhHHHHHHHHHHcC
Q 011226 136 ELMTEKAEALLEKMKELNLGF-SSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS--SIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~ 207 (490)
.....+...+-.+.-.. | |...-..+...+...|+.+.|++.+-.+.+. |.. |...-..++..+...|
T Consensus 216 aa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444333333333322 3 4444455555666666666666655554433 222 3334444555444444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.68 Score=44.03 Aligned_cols=184 Identities=13% Similarity=0.136 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CChhhHHHH
Q 011226 263 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT--YDIRVTNVM 340 (490)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 340 (490)
+..+|..-+.--...|+.+.+.-+|+...-.--. -...|-..+.-....|+.+.|..++....+-..+ |......+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3567888888888899999999988877532111 1123333444444458888888887776554333 222222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH---HHHHHHHhcCCCCCCCCcCCHHHH---
Q 011226 341 IGAYAKEGRLENAEELKERARRRGADPNAKTW-EIFSDYYLRNGDMKLAV---DCLEKAIDTGRGDGGKWVPSSETI--- 413 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~p~~~~~--- 413 (490)
+ .-..|+++.|..+++.+.+. . |+.... ..-+....+.|+.+.+. +++....... -+..+.
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--------~~~~i~~~l 442 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--------ENNGILEKL 442 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--------cCcchhHHH
Confidence 2 33467999999999999876 3 554332 22244456777877777 3333332221 222222
Q ss_pred -HHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 414 -RTFMR-HFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 414 -~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
....+ .+.-.++.+.|..++.++.+..+ ++...|..+++.....+.
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~-~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILP-DCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCC-ccHHHHHHHHHHHHhCCc
Confidence 22222 23446889999999999999998 999999999999887774
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.039 Score=43.35 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----ccCCCCHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN-----RNAHRDLSAY 267 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~ 267 (490)
....++..+...|+++.|..+.+.+... .|.+...|..+|.+|...|+...|.+.|+.+.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455667777888888888888888886 677888888888888888888888888877643 4676765543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.012 Score=40.37 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRD----GRVAAD-WTTFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
++.+..+|...|++++|+..|++..+. |...++ ..++..+..+|...|++++|++.+++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444455555555555544444321 101111 233444444444445555554444443
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.046 Score=42.74 Aligned_cols=91 Identities=12% Similarity=0.002 Sum_probs=73.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH
Q 011226 340 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419 (490)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 419 (490)
...-+...|++++|..+|.-+.-.++- +..-|..|..++-..+++++|+..|......+. -|+..+.....+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-------~dp~p~f~agqC 114 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-------NDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------CCCCccchHHHH
Confidence 344456789999999999999876543 556667777788889999999999999887763 344446667889
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 011226 420 FEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~~~ 438 (490)
+...|+.+.|...|+.+.+
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999888
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.091 Score=48.34 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=54.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK----TWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+...++.+..+|...|++++|+..|++.++. .|+.. +|..+..+|...|+.++|+..++++++.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5677888888999999999999999998874 67754 47888888999999999999999998863
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.067 Score=50.26 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=83.8
Q ss_pred HHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH
Q 011226 55 KWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYC 134 (490)
Q Consensus 55 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 134 (490)
......+++.+-+.|-.+.|+++..+ + ..-.+...+.|+++.|.++.++.. +...|..|.....
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKELD----DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHHH
Confidence 45566667777777777777766432 2 123556667777777777776664 5667777777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHH
Q 011226 135 KELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAER 214 (490)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 214 (490)
++|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.....| + ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~---~---~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG---D---INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc---C---HHHHHHHHHHcCCHHHHHH
Confidence 78888877777766443 6666666777777766666666655544 1 4555556666677777666
Q ss_pred HHHHH
Q 011226 215 VIEEM 219 (490)
Q Consensus 215 ~~~~~ 219 (490)
++.+.
T Consensus 424 lL~~~ 428 (443)
T PF04053_consen 424 LLIET 428 (443)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.074 Score=47.72 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
.++..+..++.+.+++..|+..-++.+..+. +|.....--..+|...|+++.|...|+++++..| .|-.+-+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-------~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~ 329 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-------NNVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARA 329 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-------CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 3566677788888999999999999888862 6677888888889999999999999999999988 7777777
Q ss_pred HHHHHHHhcCC---CcHHHHHHHhhC
Q 011226 450 PLIRTYAAAGR---TSPVMLRRLKME 472 (490)
Q Consensus 450 ~l~~~~~~~g~---~~~~~~~~m~~~ 472 (490)
.|+.+-.+..+ ....++..|-..
T Consensus 330 el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 330 ELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77776665555 334566666443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.11 Score=39.09 Aligned_cols=101 Identities=10% Similarity=0.094 Sum_probs=63.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHH
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 201 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 201 (490)
|..++..++.++++.|+++....+++..=. +..+... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345667777777777777777777755432 2111100 0000 1123346678888888888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHc
Q 011226 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA 242 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (490)
+|+..|++..|.++++...+.-.++.+..+|..|+.-....
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 88888888888888888777654666677777777655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.096 Score=48.18 Aligned_cols=98 Identities=12% Similarity=-0.074 Sum_probs=69.6
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011226 298 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI--RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF 375 (490)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 375 (490)
+...++.+..+|...|++++|...|+...+..+.... .+|..+..+|...|+.++|+..+++..+.+ . ..|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhHHHH
Confidence 3456788999999999999999999999887665221 358889999999999999999999999852 1 123211
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHhcC
Q 011226 376 SD--YYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 376 ~~--~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.. .+..-.+.++..++++...+.|
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhC
Confidence 11 1112223345666777777766
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.85 Score=40.35 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=12.7
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011226 378 YYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~ 396 (490)
.+.+.++++.|.+.|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456777777777776544
|
It is also involved in sporulation []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.045 Score=46.39 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCCCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 011226 108 AAENYFVDLPETSKNHLTYGSLLNCYCKE-----LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK 170 (490)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (490)
...+.|..+.....|..+|-..+..+... +.++-.-..++.|.+.|+..|..+|+.|++.+-+
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 34555666654456667777777666543 5566666778889999999999999999887643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.21 Score=38.15 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=39.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCC--CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNT--ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 346 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (490)
....+.|++++|.+.|+.+....+.. ....-..++.+|.+.++++.|...++...+..+.....-|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34455666666666666666554321 1123344555666666666666666666555544333444444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.8 Score=38.82 Aligned_cols=182 Identities=16% Similarity=0.215 Sum_probs=87.2
Q ss_pred HHHcCCHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc----
Q 011226 239 YVEAGLFEKAERALKELENRNAH--RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL---- 312 (490)
Q Consensus 239 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 312 (490)
-.+.|++++|.+.|+.+....+- -...+.-.++-++.+.++++.|+...++.....+.....-|...|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 34556666666666666543221 122334445555666666666666666666655544444444444444421
Q ss_pred ---CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011226 313 ---KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 389 (490)
Q Consensus 313 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 389 (490)
.|...+...+..+. .++.-|=...-...|..-+..+... + ...=..+.+-|.+.|.+-.|.
T Consensus 124 ~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~-L---A~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 124 DVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA-L---AGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH-H---HHHHHHHHHHHHHhcChHHHH
Confidence 12222222222211 1111111111112222222222110 0 000013445677888888888
Q ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 390 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.-++++++.-.. ..-....+-.+..+|...|-.++|.+.-+-+ ..+.
T Consensus 188 nR~~~v~e~y~~----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl-~~N~ 234 (254)
T COG4105 188 NRFEEVLENYPD----TSAVREALARLEEAYYALGLTDEAKKTAKVL-GANY 234 (254)
T ss_pred HHHHHHHhcccc----ccchHHHHHHHHHHHHHhCChHHHHHHHHHH-HhcC
Confidence 888888887410 1112345566677888888888887765543 3444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.15 Score=37.84 Aligned_cols=95 Identities=20% Similarity=0.127 Sum_probs=62.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh
Q 011226 343 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 422 (490)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 422 (490)
++...|+++.|++.|.+.+..- +-....||.-..++--.|+.++|++-+++.++..... .+.--..|..-...|..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~---trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ---TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHH
Confidence 4566778888888887777642 2356677777777777788888888777777763110 00112334444455677
Q ss_pred cCChHHHHHHHHHHHHcCC
Q 011226 423 EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~~~~~ 441 (490)
.|+-+.|..-|+...++|.
T Consensus 128 ~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGS 146 (175)
T ss_pred hCchHHHHHhHHHHHHhCC
Confidence 7888888888888777775
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.9 Score=42.83 Aligned_cols=181 Identities=16% Similarity=0.196 Sum_probs=120.3
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHH----HHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAI----HLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYG 127 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 127 (490)
....++..-+..+.+..-++-|+.+-+. .+. +..+... ..+-+.+.|++++|...|-+-.. ..|+
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s----- 401 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS----- 401 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----
Confidence 3455566677778888888888877543 332 3333333 34555578999999888876655 4333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
.+|.-|....++.+--..++.+.+.|. .+...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 345556666777777788888888887 677777889999999999888877776544 2221 112345677777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
-.++|..+-..... +...... .+-..+++++|++.++.+.
T Consensus 478 yl~~a~~LA~k~~~------he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 478 YLDEAELLATKFKK------HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred hHHHHHHHHHHhcc------CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 77777766554432 2333333 3445688999999888764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.6 Score=41.82 Aligned_cols=181 Identities=13% Similarity=0.007 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH------HHHHHHHHHHHh----cCCh
Q 011226 211 GAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL------SAYQFLITLYGQ----TGNL 280 (490)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~ 280 (490)
-..-+|.-+... +||... .++...+=.|+-+.+++.+....+.+--..+ -.|...+..++. ..+.
T Consensus 175 ~G~G~f~L~lSl--LPp~~~---kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 175 FGFGLFNLVLSL--LPPKVL---KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHh--CCHHHH---HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 345577777776 666554 5778888889999999999887653211111 234444443333 4567
Q ss_pred hHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhcCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGC---ATYDIRVTNVMIGAYAKEGRLENAEEL 356 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (490)
+.|.+++..+.+..| +...| ..-.+.+...|++++|.+.|+...... .......+-.+.-.+.-.+++++|.+.
T Consensus 250 ~~a~~lL~~~~~~yP--~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKRYP--NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 889999999988664 44444 333456677999999999999754311 122334455566778889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHhcC
Q 011226 357 KERARRRGADPNAKTWEIFSDY-YLRNGDM-------KLAVDCLEKAIDTG 399 (490)
Q Consensus 357 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~~~ 399 (490)
|..+.+.. .-+...|..+..+ +...|+. ++|.++|.+.....
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999742 2344455544443 3466777 88888888776553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.28 Score=41.83 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGAD--PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
.|+.-+. +.+.|++..|...|...++..+. -....+-.|..++...|++++|...|..+.+...+ . .--+..+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~--s--~KApdal 218 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK--S--PKAPDAL 218 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC--C--CCChHHH
Confidence 4555444 34556678888888777765322 11233445677777788888888888777776521 0 1124666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..|..+..+.|+.++|..+|+++.+.-|
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 7777777788888888888888777665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.96 Score=38.52 Aligned_cols=226 Identities=18% Similarity=0.104 Sum_probs=134.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011226 207 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR-NAHRDLSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
+....+...+...............+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555553200012455566666677777777777776666542 122344455555566666666777777
Q ss_pred HHHHHHHhCCCCCchhHHHHHH-HHHhcCChhhHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 286 IWRSLRLAFPNTANISYLNMIQ-VLVNLKDLPGAEKCFKEWESGCA--TYDIRVTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777665543332 112222222 56777777777777777644222 11233333344445667788888888888777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 363 RGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 363 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.........+..+...+...++++.|...+....... |+ ...+..+...+...+..+.+...+.+.....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4211135566667777777778888888888888775 44 44445555555566678888888888777665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.21 Score=42.55 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC--CCHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAH--RDLSAYQF 269 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ 269 (490)
.|+.-+.. .+.|++..|...|...++. .|-+ ...+-.|..++...|++++|..+|..+.+.-.+ .-+..+-.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555443 4677788888888887775 3332 334556777788888888888888777664322 11345566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCC
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPN 296 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (490)
|..+..+.|+.++|..+|+++.+..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 666777777888888888777776543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.6 Score=40.17 Aligned_cols=407 Identities=13% Similarity=0.053 Sum_probs=212.6
Q ss_pred HHhccCCchHHHHHHHHHHhCCCCCChh------hHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHH--HHH
Q 011226 64 KLRDRKLYYPALKLSENMEKRGMNKTVS------DQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNC--YCK 135 (490)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~--~~~ 135 (490)
.+.+++++++|..+|.++-+.. ..++. .-+.++++|.. .+++.....+..+.+..|. ..|-.+..+ +-+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~-s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK-SAYLPLFKALVAYK 91 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence 4567899999999999995543 22222 22345555543 5566666666666553342 233344333 346
Q ss_pred cCCHHHHHHHHHHHHhC--CCCCC------------cchHHHHHHHHHhcCCCCcHHHHHHHHHHCCC----CCCHhhHH
Q 011226 136 ELMTEKAEALLEKMKEL--NLGFS------------SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI----MPDSYTYN 197 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~--~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~ 197 (490)
.+.+++|.+.+..-.+. +..|. -..=+..+..+...|.+.++..+++++...=+ .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78999999988877665 22221 11115667788899999999999998876533 36788888
Q ss_pred HHHHHHHHcCChh---------------HHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 011226 198 VWMRALAAVNDIS---------------GAERVIEEMKRDG-----RVAADWTTFSNLASIYVEA--GLFEKAERALKEL 255 (490)
Q Consensus 198 ~l~~~~~~~~~~~---------------~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~ 255 (490)
.++-.+.++=-++ -+.-+..++.... .+.|.......++....-. ....--.++++..
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 8666665431111 1111111111100 0222222223333222211 1111222333333
Q ss_pred HHccCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCC----CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 011226 256 ENRNAHRDLS-AYQFLITLYGQTGNLSEVYRIWRSLRLAFPN----TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA 330 (490)
Q Consensus 256 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 330 (490)
...-+.|+-. ....+...... +.+++..+-+.+....+. --..+|..++....+.++...|.+.+.-+....+
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3333444421 12222222222 455555554444322111 1134678888888999999999999888776544
Q ss_pred CCChh-----hHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHh
Q 011226 331 TYDIR-----VTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSD---YYLRNGD-MKLAVDCLEKAID 397 (490)
Q Consensus 331 ~~~~~-----~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~-~~~A~~~~~~~~~ 397 (490)
..+.. +-..+-+..+. .-+...=+.+|+.....++. .......++. -+-+.|. -++|+++++.+++
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 32211 00112222221 12334456667776665443 1122223332 3556666 7789999988887
Q ss_pred cCCCCCCCCcCCHHHHHHHH--------HHHHhcC--ChHHHHHHHHHHH--HcCCCCCHHhHHHHHHH--HHhcCCCcH
Q 011226 398 TGRGDGGKWVPSSETIRTFM--------RHFEQEK--DVDGAEGFLEILK--KAVDDLGVEVFEPLIRT--YAAAGRTSP 463 (490)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~l~--------~~~~~~g--~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~--~~~~g~~~~ 463 (490)
-.. -|...-+.+. .++.... +.-.-..+.++.- ...+ .+...-|.|.++ +...|++..
T Consensus 409 ft~-------yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i-~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 409 FTN-------YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITI-SEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred hcc-------ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccc-cHHHHHHHHHHHHHHHhcccHHH
Confidence 642 3332222111 1111111 2222233333321 1222 345555666554 677899888
Q ss_pred HHHHHHhhCCCCCCHHHHHHH
Q 011226 464 VMLRRLKMEKVEVSEASKKLL 484 (490)
Q Consensus 464 ~~~~~m~~~~~~p~~~~~~~l 484 (490)
+....+--..+.|++.+++++
T Consensus 481 c~~ys~WL~~iaPS~~~~RLl 501 (549)
T PF07079_consen 481 CYLYSSWLTKIAPSPQAYRLL 501 (549)
T ss_pred HHHHHHHHHHhCCcHHHHHHH
Confidence 888888888899998888765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.3 Score=38.37 Aligned_cols=143 Identities=13% Similarity=0.104 Sum_probs=84.2
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011226 307 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 386 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 386 (490)
......|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777776665554 445556677777777777777777777654311111112122233344444444
Q ss_pred HHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCC
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKA--VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+...+-.+.-.. | |...-..+...+...|+.+.|.+.+=.+++. +. .|...-..|+..+.-.|.
T Consensus 221 ~~~~l~~~~aad---------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD---------PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCC
Confidence 444443333332 4 5666667777777778888777766555553 33 566777777777777775
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.93 Score=43.45 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=109.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHH-----HHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT-----TFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSA 266 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 266 (490)
+..++....=.||-+.+++.+.+..+.+++.-... .|...+..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 34566666778999999999998877542222211 23344443433 45678899999999875 366655
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHHHHhC---CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 011226 267 YQFL-ITLYGQTGNLSEVYRIWRSLRLAF---PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 342 (490)
Q Consensus 267 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (490)
|... .+.+...|++++|++.|+...... .+.....+--+...+.-..++++|.+.|..+.+..- .+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 5443 456677899999999999765311 122334456677788889999999999999987533 24455544433
Q ss_pred -HHHhcCCh-------hHHHHHHHHHHH
Q 011226 343 -AYAKEGRL-------ENAEELKERARR 362 (490)
Q Consensus 343 -~~~~~~~~-------~~a~~~~~~~~~ 362 (490)
++...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44557777 788888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.91 Score=35.22 Aligned_cols=127 Identities=10% Similarity=0.071 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
...++..+...+.......+++.+...+. .+...++.++..|++.+. ....+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34566666666777777777777766654 466677777777776532 333333331 1233344456777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 382 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE-KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
.+.++++.-++.++-. +...+..+... ++++.|.+++++ . .++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~---------------~~~Al~~~l~~~~d~~~a~~~~~~-----~-~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------------FKDAIVTLIEHLGNYEKAIEYFVK-----Q-NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC---------------HHHHHHHHHHcccCHHHHHHHHHh-----C-CCHHHHHHHHHHHHc
Confidence 7777777777766421 12223333333 677777777765 1 456677777766654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.2 Score=36.60 Aligned_cols=85 Identities=12% Similarity=0.021 Sum_probs=50.3
Q ss_pred hhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHH
Q 011226 102 KVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAI 180 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 180 (490)
..|-+.-|.-=|.+.....|+ +.+||-|.--+...|+++.|.+.|+...+.++.-+-...|--|.. .--|++.-|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHH
Confidence 335555555555555554454 457777777777888888888888888876542222222222222 235677777766
Q ss_pred HHHHHHC
Q 011226 181 IQEMKAS 187 (490)
Q Consensus 181 ~~~~~~~ 187 (490)
+...-+.
T Consensus 156 ~~~fYQ~ 162 (297)
T COG4785 156 LLAFYQD 162 (297)
T ss_pred HHHHHhc
Confidence 6555444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.5 Score=37.26 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=108.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 011226 200 MRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 276 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (490)
+..-.+.|++++|.+.|+.+... .+-+ ..+.-.++.++.+.++++.|...+++.....+......|...|.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 33456889999999999999986 3333 445556778888999999999999998876554444456666665553
Q ss_pred c-------CChh---HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 011226 277 T-------GNLS---EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 346 (490)
Q Consensus 277 ~-------~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (490)
. .|.. .|..-|+++++.-| ++. | ...|..-...+...- ...=..+.+.|.+
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ryP--nS~-Y------------a~dA~~~i~~~~d~L----A~~Em~IaryY~k 179 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRYP--NSR-Y------------APDAKARIVKLNDAL----AGHEMAIARYYLK 179 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHCC--CCc-c------------hhhHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 2 2233 33444444444433 221 1 112222222211100 0011346677888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 347 EGRLENAEELKERARRRGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.|.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|.+.-.-+....
T Consensus 180 r~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 180 RGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred hcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 89999999999998886 22222 344556678888888888877765555443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.5 Score=37.29 Aligned_cols=188 Identities=13% Similarity=0.163 Sum_probs=89.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH---ccCC--CCHHHHHHHHHHHHhcCC
Q 011226 207 NDISGAERVIEEMKRDGRVAADW--TTFSNLASIYVEAGLFEKAERALKELEN---RNAH--RDLSAYQFLITLYGQTGN 279 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~~~ 279 (490)
.++++|+.-|++..+..+..-.+ .+...++..+.+.+++++..+.+.++.. +.+. -+..+.|.+++.-..+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35566666666665532111111 2233455666666666666666655532 1111 123344555554444444
Q ss_pred hhHHHHHHHHHHH----h-CCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-----------CChhhHHHHHHH
Q 011226 280 LSEVYRIWRSLRL----A-FPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-----------YDIRVTNVMIGA 343 (490)
Q Consensus 280 ~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~ 343 (490)
.+-..++++.-.+ . +-..=-.|-..+...|...+++.+..++++++..+... .=..+|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 4433333332111 0 00000112234556666666666666666666432211 013455666667
Q ss_pred HHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHH
Q 011226 344 YAKEGRLENAEELKERARR-RGADPNAKTWEIFSDYY-----LRNGDMKLAVDCLEKA 395 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~ 395 (490)
|..+.+-..-..++++... ....|.+.... +|+-| .+.|++++|-.-|-++
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 7777776677777776654 22234443332 33333 4566676665443333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.48 Score=44.69 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=12.4
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
+...|..|.....+.|+++-|++.|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 333444444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.3 Score=44.06 Aligned_cols=61 Identities=5% Similarity=-0.007 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 257 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 257 (490)
.++.+.-++.+.+++..|++..+..+.. .+.|....-.-..++...|+++.|...|+.+.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444555666666666666666666665 455555555555666666666666666666655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.1 Score=35.40 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=81.0
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHH---
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTV-SDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSL--- 129 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l--- 129 (490)
+...|...++ +.+.+..++|+.-|..+.+.|...-+ -............|+...|...|+++....+.+....-+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444444443 56778888999999988887754222 122233445567788888888888887733333333222
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 011226 130 --LNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187 (490)
Q Consensus 130 --i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 187 (490)
...+...|.++......+-+...+-+.....-..|.-+-.+.|++..|.++|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2234566777777777666655444333344455666666777777777777776654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.85 Score=34.10 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
+...+..+...|+-+.-.+++..+.+ .-.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556666666666666666654 2334556666666666666666666666666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.88 Score=39.98 Aligned_cols=115 Identities=17% Similarity=0.011 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCc--hhH--HHHHHHHHhcCChhh
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN--ISY--LNMIQVLVNLKDLPG 317 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~--~~l~~~~~~~~~~~~ 317 (490)
.|+..+|-..++++.+. .+.|...+...-.+|.-.|+.+.-...++++.-. -.+|. .+| ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555542 2345555555555555555555555555554322 01122 122 122223344555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011226 318 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 359 (490)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (490)
|++.-++..+.+.. |.....++...+-..|+..++.+...+
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555555444332 444444445555555555555555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.16 E-value=3.6 Score=40.48 Aligned_cols=106 Identities=12% Similarity=0.140 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 414 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~ 414 (490)
-+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-+++-+... ++.-|.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------------sPIGy~ 748 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------------SPIGYL 748 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------------CCCCch
Confidence 344555666777788888888776654 4677888888888888888887666654432 234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
.+..+|.+.|+.++|.+.+-+... +.-...+|.+.|+..+|.
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAA 790 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHH
Confidence 677888888888888887755321 114666677777755543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.16 E-value=1 Score=35.31 Aligned_cols=52 Identities=15% Similarity=-0.073 Sum_probs=29.6
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhHH-HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLTY-GSLLNCYCKELMTEKAEALLEKMKELN 153 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~ 153 (490)
+.++.+++..+++.+.-..|..... ..-...+...|+|.+|..+|+++.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 4566667776666666543443222 112233556777777777777766543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.1 Score=34.65 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 011226 235 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (490)
++..+.+.+.......+++.+...+. .+...++.++..|++.. ..+..+.+.. ..+......++..|.+.+-
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 44444444555555555555544432 34445555555555432 2222222221 1122333344555555555
Q ss_pred hhhHHHHHHH
Q 011226 315 LPGAEKCFKE 324 (490)
Q Consensus 315 ~~~a~~~~~~ 324 (490)
++++..++..
T Consensus 85 ~~~~~~l~~k 94 (140)
T smart00299 85 YEEAVELYKK 94 (140)
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.74 Score=34.31 Aligned_cols=91 Identities=19% Similarity=0.094 Sum_probs=56.2
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHH---HHHHHHHHHHhcC
Q 011226 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLS---AYQFLITLYGQTG 278 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 278 (490)
+....|+++.|++.|.+.+.. .|.....||.-..++.-.|+.++|++-+++..+..-..+.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 455677777777777777776 66677777777777777777777777777665532212222 2222233455566
Q ss_pred ChhHHHHHHHHHHHhC
Q 011226 279 NLSEVYRIWRSLRLAF 294 (490)
Q Consensus 279 ~~~~a~~~~~~~~~~~ 294 (490)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666555444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.14 E-value=2.9 Score=39.22 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCAT-YDIRVTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
..+..++-+.|+.++|.+.++++.+..+. .+..+...|+.++...+.+.++..++.+--+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44566666778888888888777654332 2334666777778888888888777777543
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=2.9 Score=39.00 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 430 (490)
+|.++-++..+.+.. |......+..+....++++.|..+|++....+ || ..+|......+.-.|+.++|.
T Consensus 322 ~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 322 KALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444544322 44444444444444555555555555555554 44 344444444445555555565
Q ss_pred HHHHHHHHcCC
Q 011226 431 GFLEILKKAVD 441 (490)
Q Consensus 431 ~~~~~~~~~~~ 441 (490)
+.+++..++.|
T Consensus 393 ~~i~~alrLsP 403 (458)
T PRK11906 393 ICIDKSLQLEP 403 (458)
T ss_pred HHHHHHhccCc
Confidence 55555555554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.11 Score=30.74 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS 233 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (490)
+..+..+|...|++++|+++|+++++. .|.|...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHH
Confidence 344455555555555555555555554 344444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.4 Score=34.82 Aligned_cols=124 Identities=14% Similarity=0.076 Sum_probs=54.2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHH-HHHHH--HHHHHhcCCh
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLS-AYQFL--ITLYGQTGNL 280 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~ 280 (490)
.+.+..++|+.-|..+.+.|.-..-............+.|+...|...|+++-.....|-.. -...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34555666666666666654111111122223334455566666666666665433333221 00011 1123445555
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
++.....+.+-..+-..-...-..|.-+-.+.|++.+|...|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444432221111111123344444555666666666655544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.55 Score=41.64 Aligned_cols=224 Identities=11% Similarity=0.007 Sum_probs=116.0
Q ss_pred ccCCchHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhhCCHHHHHHHH----hhcCC---CCCCHhHHHHHHHHHHHcC
Q 011226 67 DRKLYYPALKLSENMEKRG--MNKTVSDQAIHLDLVAKVQGIDAAENYF----VDLPE---TSKNHLTYGSLLNCYCKEL 137 (490)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~---~~~~~~~~~~li~~~~~~~ 137 (490)
.+.+.++|+..+.....+- ......++..+..+.++.|.+++++..- +...+ ...--..|-.+.+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655543221 1122345566667777777776654432 11111 1111234555555655555
Q ss_pred CHHHHHHHHHHHHhC-CCCCC---cchHHHHHHHHHhcCCCCcHHHHHHHHHHCCC-----CCCHhhHHHHHHHHHHcCC
Q 011226 138 MTEKAEALLEKMKEL-NLGFS---SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI-----MPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~ 208 (490)
++.+++.+-..-... |..|. -....++..+..-.+.++++++.|+...+..- .....+|..|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 566665554443332 11111 12233445555666667777777776654311 1123467777778888888
Q ss_pred hhHHHHHHHHHHHCC-CCC-CCHHH-H-----HHHHHHHHHcCCHHHHHHHHHHHHHc----cCCC-CHHHHHHHHHHHH
Q 011226 209 ISGAERVIEEMKRDG-RVA-ADWTT-F-----SNLASIYVEAGLFEKAERALKELENR----NAHR-DLSAYQFLITLYG 275 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~-~~~-~~~~~-~-----~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 275 (490)
+++|.-+.....+.- ... .|+.. | -.+.-++-..|....|.+.-++..+. |-.+ -......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 887776655543310 011 12211 2 22344555667777777776665432 2211 1233445667777
Q ss_pred hcCChhHHHHHHHHH
Q 011226 276 QTGNLSEVYRIWRSL 290 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~ 290 (490)
..|+.+.|+.-|++.
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888887777654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.2 Score=34.09 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=36.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 011226 237 SIYVEAGLFEKAERALKELENRNAH--RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 310 (490)
Q Consensus 237 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (490)
....+.|++++|.+.|+.+..+-+. -....--.++.+|.+.+++++|...++..++.++.....-|...+.+++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344455566666555555543211 1123333455556666666666666666655555433344444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.90 E-value=3.8 Score=39.31 Aligned_cols=351 Identities=10% Similarity=0.009 Sum_probs=186.4
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSD-QAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLN 131 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~ 131 (490)
+...+..++..--...+.+.+..++..+...- |-... |......=.+.|..+.+.++|++... .+.+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444444554444444556666677665443 44443 33444455577889999999988877 5566667766665
Q ss_pred HHH-HcCCHHHHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHH---HH
Q 011226 132 CYC-KELMTEKAEALLEKMKEL-NLG-FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL---AA 205 (490)
Q Consensus 132 ~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~ 205 (490)
.+. ..|+.+...+.|+..... |.. .+...|...|..-..++++.....+|+..++.- ...|+....-| .+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHh
Confidence 444 357777778888877653 211 345667777877777888888889988887741 22222222222 11
Q ss_pred c------CChhHHHHHHHHHHHC---CCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 206 V------NDISGAERVIEEMKRD---GRVAADWTTFSNLASIYVE-AGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 206 ~------~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
. ...+++.++-.....+ +...+.......-+.--.. .+..+++.....+... ..-.++-
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHH
Confidence 1 1222222222222110 0000011111111110000 1111111111111110 0011122
Q ss_pred hcCChhHHHHHHHHHHHh---CCCC----CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 011226 276 QTGNLSEVYRIWRSLRLA---FPNT----ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG 348 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 348 (490)
......+....|+.-... .++| +..+|..-+..-...|+.+.+.-+|+...--.-. =...|-..+......|
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSG 345 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcC
Confidence 222223333333333221 1222 3346777788888899999999999887543222 2245555566666669
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH-HHHHHHHHHHHhcCCh
Q 011226 349 RLENAEELKERARRRGADPNAKTWEIFSDY-YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHFEQEKDV 426 (490)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 426 (490)
+.+-|..++....+--++ +......+-.. .-..|++..|..+++.+...- |+. ..-..-+....+.|+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred chhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcch
Confidence 999999888877764333 33222222222 345689999999999999885 553 2333344556678888
Q ss_pred HHHHH
Q 011226 427 DGAEG 431 (490)
Q Consensus 427 ~~a~~ 431 (490)
+.+..
T Consensus 417 ~~~~~ 421 (577)
T KOG1258|consen 417 EDANY 421 (577)
T ss_pred hhhhH
Confidence 88873
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.1 Score=35.96 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 011226 161 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV 240 (490)
Q Consensus 161 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (490)
|.....+|-..+++++|...+.+..+. ..-+...|. ....++.|.-+.+++.+ .+.-...|+.-...|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~k---lsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSK---LSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHH
Confidence 444445555666666666666555421 111221111 11223444455555544 2333444555566666
Q ss_pred HcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCC-----CCCchhHHHHHHHHHhcCCh
Q 011226 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP-----NTANISYLNMIQVLVNLKDL 315 (490)
Q Consensus 241 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 315 (490)
.+|.++-|-..+++..+. ....++++|+++|.+....-. +.-...+..+-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666665555554331 122334444444443322100 00111233344445555555
Q ss_pred hhHHHHHHHHH----hcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 011226 316 PGAEKCFKEWE----SGCATYD-IRVTNVMIGAYAKEGRLENAEELKERARRRG---ADPNAKTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 316 ~~a~~~~~~~~----~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 387 (490)
++|-..+..-. +..-.++ -..|-..|-.+....++..|...++.--..+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 55554444321 1111111 1234445555666667777777777633211 112445666666665 3456555
Q ss_pred HHHH
Q 011226 388 AVDC 391 (490)
Q Consensus 388 A~~~ 391 (490)
+..+
T Consensus 246 ~~kv 249 (308)
T KOG1585|consen 246 IKKV 249 (308)
T ss_pred HHHH
Confidence 5444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.8 Score=37.12 Aligned_cols=227 Identities=15% Similarity=0.101 Sum_probs=119.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH-------HHHHHHcC-CHHHHHHHHHHHHHc--------cCCCC----
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNL-------ASIYVEAG-LFEKAERALKELENR--------NAHRD---- 263 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~-~~~~A~~~~~~~~~~--------~~~~~---- 263 (490)
.+.|+.+.|..++.+..... ...++.....+ .....+.+ +++.|..++++..+- ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~-~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLL-NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45677777777777766542 12222222222 22233345 777777666655332 11222
Q ss_pred -HHHHHHHHHHHHhcCChh---HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 011226 264 -LSAYQFLITLYGQTGNLS---EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV 339 (490)
Q Consensus 264 -~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (490)
..+...++.+|...+..+ +|..+++.+....+. ...++..-+..+.+.++.+.+.+.+..|...-.. ....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 245667778887777654 456666666555443 2445555667777788899999999998876332 2234444
Q ss_pred HHHHH---HhcCChhHHHHHHHHHHHcCCCCCHHHH-HH-HHH---HHHhcCC------HHHHHHHHHHHHhcCCCCCCC
Q 011226 340 MIGAY---AKEGRLENAEELKERARRRGADPNAKTW-EI-FSD---YYLRNGD------MKLAVDCLEKAIDTGRGDGGK 405 (490)
Q Consensus 340 li~~~---~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~-l~~---~~~~~g~------~~~A~~~~~~~~~~~~~~~~~ 405 (490)
++..+ .. .....+...+..+....+.|....| .. ++. ...+.++ .+...++++...+....|
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~--- 236 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ--- 236 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC---
Confidence 44444 33 3345666666666654455544311 11 111 1112111 444445555433332211
Q ss_pred CcCC-HHHHHHH----HHHHHhcCChHHHHHHHHHHH
Q 011226 406 WVPS-SETIRTF----MRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 406 ~~p~-~~~~~~l----~~~~~~~g~~~~a~~~~~~~~ 437 (490)
+.+. .....++ +..+.+.++++.|...|+-..
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1122 1222233 334567899999999998654
|
It is also involved in sporulation []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.58 E-value=3.1 Score=36.96 Aligned_cols=129 Identities=9% Similarity=0.229 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHh--cCC----hhHHHHHHHHHHHhCC---CCCchhHHHHHHHHHhcCC--
Q 011226 246 EKAERALKELENRNAHRDLSAYQFLITLYGQ--TGN----LSEVYRIWRSLRLAFP---NTANISYLNMIQVLVNLKD-- 314 (490)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-- 314 (490)
++...+++.|.+.|+..+..+|-+....... ..+ ...|..+|+.|++.++ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777777776555543222222 222 3567778888887765 3344555555433 2333
Q ss_pred --hhhHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011226 315 --LPGAEKCFKEWESGCATYDIR--VTNVMIGAYAKEGR--LENAEELKERARRRGADPNAKTWEIFS 376 (490)
Q Consensus 315 --~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~ 376 (490)
.+.++.+|+.+.+.|...+-. ....++...-.... ...+.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 245566777777766544322 22222222211111 446788888888888887777665443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.47 E-value=4.3 Score=38.11 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=70.1
Q ss_pred cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 011226 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL 356 (490)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (490)
.....++.+++++..+.+-.. .-...... ..|. .++.+......+-..+-..+..++.+.|+.++|.+.
T Consensus 213 A~Ti~Eae~l~rqAvkAgE~~--lg~s~~~~---~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~ 281 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGEAS--LGKSQFLQ---HHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKM 281 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHh--hchhhhhh---cccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHH
Confidence 455788888888876654210 00000111 1111 112222333333344445677888899999999999
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 357 KERARRRGAD-PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 357 ~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+++|.+.... -+......++.++...+.+.++..++.+.-+..
T Consensus 282 ~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 282 FRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred HHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 9999874322 133466789999999999999999999976543
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.37 E-value=7.7 Score=40.58 Aligned_cols=106 Identities=12% Similarity=0.033 Sum_probs=61.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK--TWEIFSDYYLR 381 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~ 381 (490)
+...-+.....+++|--.|+..-+. ..-+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHH
Confidence 3334445566777777666654221 23466777888888888877766531 1222 22456667777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011226 382 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 435 (490)
.+++-+|-++..+.... | .-.+..+++...+++|.++...
T Consensus 1012 ~~kh~eAa~il~e~~sd---------~-----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD---------P-----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cccchhHHHHHHHHhcC---------H-----HHHHHHHhhHhHHHHHHHHHHh
Confidence 88888888777776544 2 1222345555566666655544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.7 Score=32.56 Aligned_cols=136 Identities=12% Similarity=0.183 Sum_probs=81.9
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchh---HHHHHHHHHhcCChh
Q 011226 240 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANIS---YLNMIQVLVNLKDLP 316 (490)
Q Consensus 240 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 316 (490)
.-.|..++..+++.+...+ .+..-+|-+|--....-+-+-..++++.+ |.-.|... ...++.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc--
Confidence 3457777777887777663 23444555554444444444555555444 22223322 2344555544432
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 317 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
+.......+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++-+++.++-
T Consensus 85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3345566778889999999999999998763 35788888899999999999999999999999
Q ss_pred hcCC
Q 011226 397 DTGR 400 (490)
Q Consensus 397 ~~~~ 400 (490)
+.|.
T Consensus 148 ekG~ 151 (161)
T PF09205_consen 148 EKGL 151 (161)
T ss_dssp HTT-
T ss_pred Hhch
Confidence 9983
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.6 Score=35.39 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=66.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHH
Q 011226 344 YAKEGRLENAEELKERARRRGADPNA-----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFM 417 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~ 417 (490)
+...|++++|..-|.+.++. +++.. ..|..-..++.+.+.++.|++-..+.++.+ |+ ......-.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty~kAl~RRA 175 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTYEKALERRA 175 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chhHHHHHHHH
Confidence 56678888888888888875 22222 233344456778888888888888888887 54 33334445
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 011226 418 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (490)
.+|.+...+++|++-|+++.+..| ....+-..
T Consensus 176 eayek~ek~eealeDyKki~E~dP-s~~ear~~ 207 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDP-SRREAREA 207 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCc-chHHHHHH
Confidence 678888889999999999888887 33344433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=3 Score=35.29 Aligned_cols=204 Identities=19% Similarity=0.128 Sum_probs=118.2
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...+......+...+++..+...+...............+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3444555556666666666666666655410034445555556666666666666666666665533322 111222222
Q ss_pred -HHHhcCChhHHHHHHHHHHHhCCC--CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 011226 273 -LYGQTGNLSEVYRIWRSLRLAFPN--TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 349 (490)
Q Consensus 273 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (490)
.+...|+++.+...+.......+. .....+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 566677777777777766442210 11222333333355667777777777777665333235566677777777788
Q ss_pred hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 350 LENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
++.|...+...... .|+ ...+......+...+..+.+...+.+.....
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888887774 233 3344444444446677888888888887776
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.57 Score=40.05 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCcchHHHHHHHHHhc-----CCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHH
Q 011226 156 FSSMPFNSLMTLYAKT-----GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT 230 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (490)
.|-.+|...+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+ |.+.|..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-----------------gkfiP~n- 126 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-----------------GKFIPQN- 126 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-----------------cccccHH-
Confidence 4455555555554432 3334444445555666666666666666554422 1122211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 280 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (490)
.+....-.|-+ +-+=+++++++|...|+.||..+-..+++++.+.+-.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11111111111 2234678888888888888888888888888877653
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.07 E-value=2.7 Score=34.09 Aligned_cols=91 Identities=12% Similarity=0.067 Sum_probs=65.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH
Q 011226 340 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEI-----FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 414 (490)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~ 414 (490)
+...+...|++++|...++..... |....+.. +.+.....|.+++|+..++.....+ -......
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--------w~~~~~e 163 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--------WAAIVAE 163 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--------HHHHHHH
Confidence 456677888999998888877753 33334433 3456678889999999888776665 3344455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.-.+.+...|+-++|..-|++.++.+.
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 567788889999999999998888763
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.02 E-value=4.3 Score=36.33 Aligned_cols=127 Identities=17% Similarity=0.033 Sum_probs=56.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhC-----CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh----cCCCC-C----hh
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAF-----PNTANISYLNMIQVLVNLKDLPGAEKCFKEWES----GCATY-D----IR 335 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~----~~ 335 (490)
+..++...+.++++++.|+...+-- ......++..|...|....|+++|.-+.....+ .++.. + ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3444444555555555555443211 111123455555555566666655544433221 11110 0 01
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGA-DPNAKT----WEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
..-.+.-++...|++-+|.+.-++..+..+ .-|..+ ...+.+.|-..|+.+.|+.-|++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 112233445556666666666655543211 112222 2334445556666666666665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.63 Score=40.42 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH--HH-----HHhhCCCCCCHHHHH
Q 011226 410 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM--LR-----RLKMEKVEVSEASKK 482 (490)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~--~~-----~m~~~~~~p~~~~~~ 482 (490)
..++..++..+...|+.+.+.+.++++....| -+...|..++.+|.+.|+...++ ++ .+++.|+.|.+.+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 44677888899999999999999999999999 89999999999999999955443 22 455679999998887
Q ss_pred HHHHh
Q 011226 483 LLEAI 487 (490)
Q Consensus 483 ~l~~~ 487 (490)
+..++
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.93 Score=39.41 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----ccCCCCHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN-----RNAHRDLSAYQ 268 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~ 268 (490)
.++..++..+...|+.+.+...++++... .+.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45666777888888888888888888887 677888888888888888888888888887755 46666666555
Q ss_pred HHHHH
Q 011226 269 FLITL 273 (490)
Q Consensus 269 ~l~~~ 273 (490)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 54444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.88 E-value=4.5 Score=36.02 Aligned_cols=22 Identities=14% Similarity=0.233 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhCCCCCchhHH
Q 011226 282 EVYRIWRSLRLAFPNTANISYL 303 (490)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~ 303 (490)
.+.++++.+.+.++++....|.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcCCcccccccc
Confidence 4455555555555555444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.84 E-value=5.3 Score=36.76 Aligned_cols=66 Identities=23% Similarity=0.143 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 227 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR---DLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
....+|..++..+.+.|.++.|...+..+...+... .......-+...-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445567778888888888888888888877643211 233444445666777888888888877766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=3.7 Score=38.33 Aligned_cols=126 Identities=7% Similarity=-0.032 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHH
Q 011226 350 LENAEELKERARR-RGADPNA-KTWEIFSDYYL---------RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR 418 (490)
Q Consensus 350 ~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 418 (490)
.+.|..+|.+... ..+.|+. ..|..+..++. ......+|.++.++.++.+. .|+.....+..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-------~Da~a~~~~g~ 346 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-------VDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHH
Confidence 4567888888872 2234443 33333333221 12345678889999999872 56888888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHH
Q 011226 419 HFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKL 483 (490)
Q Consensus 419 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~ 483 (490)
+..-.++++.|...|+++..++| ....+|........-.|+..+++...-++..+.|......+
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 88888999999999999999999 88899998988899999988888777777777777654443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.09 Score=28.93 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=26.1
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHH
Q 011226 433 LEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV 464 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 464 (490)
|+++++..| .|+.+|+.|...|...|+..++
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhh
Confidence 677888888 8999999999999999986554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.64 E-value=8.7 Score=38.57 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=45.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
++..+.+..+.+.++.+.+..-+ -++..|..++..+.+.+.++...+...++++.=...+...-..+++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~----------~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~ 780 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK----------EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQI 780 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc----------cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 45556667777777776655422 35678888888888888766666555554442111222223446666
Q ss_pred HHhcCC
Q 011226 455 YAAAGR 460 (490)
Q Consensus 455 ~~~~g~ 460 (490)
+++.+.
T Consensus 781 Lakn~~ 786 (933)
T KOG2114|consen 781 LAKNGT 786 (933)
T ss_pred HhcCCc
Confidence 666665
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.63 E-value=3.9 Score=34.49 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKT 171 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (490)
.|.....+|....++++|...+.+..+...+...+-.. ..-++.|.-+.+++.... --+..|+-....|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA------AKayEqaamLake~~kls--Evvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHh
Confidence 34444555666666777666665554311111111111 122344444444444421 1123445555666777
Q ss_pred CCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHcCCHHH
Q 011226 172 GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (490)
|.++.|-..+++.-+. ...-+++.|+++|++.... ++..--...+....+.+.+...+++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 7776666665544321 1222344444444443321 1011122234444555666666666
Q ss_pred HHHHHHHHHHccC----CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHhCC---CCCchhHHHHHHHHHhcCChhhHH
Q 011226 248 AERALKELENRNA----HRDL-SAYQFLITLYGQTGNLSEVYRIWRSLRLAFP---NTANISYLNMIQVLVNLKDLPGAE 319 (490)
Q Consensus 248 A~~~~~~~~~~~~----~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 319 (490)
|-..|.+-..... -++. ..|...|-.|.-..++..|...++.-.+.+- .-+..+...|+.+| ..||.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 6555544321100 0111 2233444455555677777777766332211 11334555555555 345666555
Q ss_pred HHH
Q 011226 320 KCF 322 (490)
Q Consensus 320 ~~~ 322 (490)
+++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.9 Score=30.65 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+..+-++.+.... +.|++.+..+.+++|.+.+++..|.++|+-++.+-. +....|..+++-+
T Consensus 28 e~rrglN~l~~~D------lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYD------LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSS------B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccc------cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHHHH
Confidence 4555666666666 679999999999999999999999999998876543 3333676666543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.52 E-value=6.1 Score=36.39 Aligned_cols=125 Identities=8% Similarity=0.002 Sum_probs=72.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-----
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADP---NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG----- 404 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----- 404 (490)
...+|..++..+.+.|.++.|...+..+...+... .+......+..+-..|+..+|+..+++..........
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44566667777777777777777777766533111 2233334455556667777777777666662111000
Q ss_pred --------------------C--CcCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 405 --------------------K--WVPSSETIRTFMRHFEQE------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 405 --------------------~--~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
. ...-...+..+..-+... +..+++...|+++.+..+ .....|..+...+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP-SWEKAWHSWALFND 303 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHH
Confidence 0 000122333344444444 778888899999988877 66667777777765
Q ss_pred hc
Q 011226 457 AA 458 (490)
Q Consensus 457 ~~ 458 (490)
+.
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 44
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.6 Score=34.24 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 230 TTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+...-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4466677777777777777777777766433322 23445566666777777777766666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.30 E-value=9.2 Score=37.79 Aligned_cols=147 Identities=16% Similarity=0.036 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH-------ccCCCCHHHHHHHHHHHHhcC--
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASI-YVEAGLFEKAERALKELEN-------RNAHRDLSAYQFLITLYGQTG-- 278 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 278 (490)
...+.++++...+.|...+-...-.....+ +....+.+.|+.+|+.+.. .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 345666666666654222222211122222 3344566666666666654 33 1223444445554432
Q ss_pred ---ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cC
Q 011226 279 ---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN---LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EG 348 (490)
Q Consensus 279 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 348 (490)
+.+.|..++...-..|. |+...+ +...+.. ..+...|.++|......|.. ..+-.+..+|.. ..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVER 378 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCC
Confidence 44556666666555443 222222 2222221 13455666666666665542 122222222221 23
Q ss_pred ChhHHHHHHHHHHHcC
Q 011226 349 RLENAEELKERARRRG 364 (490)
Q Consensus 349 ~~~~a~~~~~~~~~~~ 364 (490)
+.+.|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 5566666666666655
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.29 E-value=3.4 Score=32.86 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=55.7
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 011226 181 IQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 260 (490)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 260 (490)
++.+.+.+++|+...+..+++.+.+.|++..... +...+ +-+|.......+-.+ .+....+.++--+|.++-
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~-Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYH-VIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhc-ccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh-
Confidence 3444445555666666666666666665443322 22223 333333222221111 112222333333332210
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 261 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
...+..+++.+...|++-+|+++.+.... .+......++++..+.+|...-..+++-...
T Consensus 89 ---~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 ---GTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01244455555566666666655554311 1222233455555555555544444444433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.28 E-value=3.3 Score=32.55 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=24.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 346 KEGRLENAEELKERARRRGADPNAKTWEIF-SDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
..++.+++..++..+.-. .|.......+ ...+...|++.+|+.+|+++.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 344555555555555542 3333222111 123445555556666555554443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.86 Score=31.88 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
++.+-++.+.... ..|++.+..+.+++|.+.+++..|.++|+-++..-. .+...|..+++-
T Consensus 25 e~rr~mN~l~~~D------lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~lqe 85 (103)
T cd00923 25 ELRRGLNNLFGYD------LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHHHH
Confidence 5566667777666 679999999999999999999999999998885433 355577766654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.16 E-value=10 Score=37.98 Aligned_cols=82 Identities=12% Similarity=-0.006 Sum_probs=50.3
Q ss_pred CccHHHHHHHHHHhcCC------------CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhh
Q 011226 36 DVSVRQQLNQFLKSKKR------------VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKV 103 (490)
Q Consensus 36 ~~~~~~~l~~~~~~~~~------------~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (490)
.+.....+..+++.... ++......+|-.+.+.|++++|.++.......- ......+...+..+...
T Consensus 80 ~p~~~~~V~afv~~~~~~~~~~~~~~l~~~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 80 VPSTYNKVRAFVNVRLKRPGAWTDSGLEIVNGDPIWALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYASS 158 (613)
T ss_dssp SS-HHHHHHHHHHCTTBESSCBSSTT--EETTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTTT
T ss_pred CCCcHHHHHHHHHHHhcccCCCcccccccCCCCccHHHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHhC
Confidence 44556666666665442 356667788888999999999999986554332 34455666777777654
Q ss_pred CC-------HHHHHHHHhhcCC
Q 011226 104 QG-------IDAAENYFVDLPE 118 (490)
Q Consensus 104 g~-------~~~a~~~~~~~~~ 118 (490)
.+ -+....-|++...
T Consensus 159 ~~~~l~~~~~~~l~~ey~~~~r 180 (613)
T PF04097_consen 159 PDRRLPPELRDKLKLEYNQRIR 180 (613)
T ss_dssp TSS---TCCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 22 2345555555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.36 Score=26.23 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..+..+...+...|++++|.+.+++.++..|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4677888999999999999999999999886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.0054 Score=48.04 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=83.3
Q ss_pred HHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCH
Q 011226 60 DTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMT 139 (490)
Q Consensus 60 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 139 (490)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-----yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-----YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-----S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-----cCHHHHHHHHHhcchH
Confidence 35667777888999999999998776566788889999999999888888888874433 2234567777777888
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 140 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
++|.-++.++.... ..+..+...++++.|.+.+.+. ++...|..+++.+...++
T Consensus 87 ~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 87 EEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 88887776643321 1111133445666666433321 356667777776655543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.35 Score=26.36 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+|..+..++...|++++|+..|+++++..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5788899999999999999999999999886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.26 Score=27.48 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.17 Score=27.80 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=18.3
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011226 217 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE 249 (490)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 249 (490)
++.++. .|.+..+|+.+...|...|++++|.
T Consensus 3 ~kAie~--~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIEL--NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344443 4556666666666666666666654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.98 Score=31.61 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 236 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 236 (490)
++.+-++.+....+.|++....+.+++|.+.+|+..|+++|+.+... +..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 44555566666667788888888888888888888888888877754 333444555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.37 E-value=5.6 Score=32.92 Aligned_cols=166 Identities=13% Similarity=0.082 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh--hhHHHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI--RVTNVMI 341 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 341 (490)
+..||.+.-.+...|+++.|.+.|+...+..+.-+-...|. .-++.--|++.-|.+-+...-..++. |+ ..|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 45677777777888888888888888877554322212222 22233467888887777666555443 22 2222222
Q ss_pred HHHHhcCChhHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC-CcCCHHHHHHHHHH
Q 011226 342 GAYAKEGRLENAEELK-ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK-WVPSSETIRTFMRH 419 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~p~~~~~~~l~~~ 419 (490)
. ..-++.+|..-+ ++... .|..-|...|..|.- |+..+ ..+++++..... .+.. -..-..||.-+...
T Consensus 177 E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~-~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKISE-ETLMERLKADAT-DNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhcc-chHHHHHHHHHHHHHHHHH
Confidence 1 223455555433 33333 255555555544432 22111 233333333220 0000 00114678888999
Q ss_pred HHhcCChHHHHHHHHHHHHcCC
Q 011226 420 FEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+...|+.++|..+|+-.+....
T Consensus 247 ~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HhccccHHHHHHHHHHHHHHhH
Confidence 9999999999999998887554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.41 Score=26.69 Aligned_cols=26 Identities=23% Similarity=0.117 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMK 150 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~ 150 (490)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.20 E-value=15 Score=37.40 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=105.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCH----H---HHHHHH-HHHHHcCCHHHHHHHHHHHHHcc----CCCCHHHHHHHH
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADW----T---TFSNLA-SIYVEAGLFEKAERALKELENRN----AHRDLSAYQFLI 271 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~----~---~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l~ 271 (490)
....++++|..++.++...- ..|+. . .++.+- ......|++++|.++.+.....- ..+....+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44567778877777776642 11111 1 122222 12234677777777776655421 123345556666
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHH---H--HHHHHhcCChhhH--HHHHHHHHhc----CC--CCChhhHH
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLN---M--IQVLVNLKDLPGA--EKCFKEWESG----CA--TYDIRVTN 338 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~~~a--~~~~~~~~~~----~~--~~~~~~~~ 338 (490)
.+..-.|++++|..+..+..+..-.-+...+.. + ...+...|+...+ ...|...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 667777888888877766654422223332222 1 1223445532222 2222222211 00 01112333
Q ss_pred HHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHH
Q 011226 339 VMIGAYAK-EGRLENAEELKERARRRGADPNAKTWE--IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT 415 (490)
Q Consensus 339 ~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~ 415 (490)
.+..++.+ .+...++..-+.-.......|-...+. .++......|+.++|...++++......++ ..++...-..
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~--~~~~~~a~~~ 662 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ--YHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC--CCchHHHHHH
Confidence 33444333 112222222222222222222222222 456667778888888888888777653211 1222222222
Q ss_pred HHH--HHHhcCChHHHHHHHHH
Q 011226 416 FMR--HFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 416 l~~--~~~~~g~~~~a~~~~~~ 435 (490)
.+. .....|+.+.+...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 23456676666665554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.54 Score=41.29 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=61.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+.|.+.|.+++|+++|...+... | ++.++..-..+|.+...+..|+.-...++.++- .-..+|..-+.+-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHH
Confidence 35778888888888888887776 5 777777777888888888888877777766553 3344444444444
Q ss_pred HhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 456 AAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 456 ~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
...|...++-.+.-....++|+...
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHH
Confidence 4444444444444444566666443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.13 E-value=3.6 Score=33.42 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-H------H
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-L------S 265 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~------~ 265 (490)
.+..+...|++.|+.+.|.+.|.++.+.. ..+. ...+-.+|......+++..+...+.+....--.+. . .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45566677777777777777777776653 2222 22345566666777777777776666544211111 1 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
.|..+ .+...+++..|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 11111 2234567777776665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.06 E-value=5.2 Score=31.87 Aligned_cols=30 Identities=13% Similarity=0.411 Sum_probs=14.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHcCCHH
Q 011226 216 IEEMKRDGRVAADWTTFSNLASIYVEAGLFE 246 (490)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (490)
++.+.+.+ ++++...+..++..+.+.|++.
T Consensus 17 irSl~~~~-i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHN-IPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 33333334 4455555555555555555433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.02 E-value=8.4 Score=34.21 Aligned_cols=151 Identities=10% Similarity=0.019 Sum_probs=89.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH----hhHHHHHHHHHHcCChh
Q 011226 135 KELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS----YTYNVWMRALAAVNDIS 210 (490)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 210 (490)
..|++.+|-..++++++. .+.|...++..=+++.-.|+.+.-...++++... ..||. +.-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 356666777777777664 3356666666667777777777777777666543 12232 22233334556677777
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 211 GAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH---RDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
+|++.-++..+. .+.|...-.++.+.+--.|++.++.++..+-.+.=-. .-..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 787777777776 5666666677777777777777777766543221000 00111222233455567778888777
Q ss_pred HH
Q 011226 288 RS 289 (490)
Q Consensus 288 ~~ 289 (490)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 64
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.92 Score=32.12 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS 237 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (490)
+..+-++.+....+.|++....+.+++|.+.+|+..|+++|+.+... +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 44455566666667778888888888888888888888888877765 3333335555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.92 E-value=19 Score=37.99 Aligned_cols=134 Identities=10% Similarity=0.004 Sum_probs=77.7
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011226 278 GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELK 357 (490)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (490)
++++.|+.-+..+. ...|.-.++.--+.|.+.+|..++..=.+ --...|.+..+.+...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34555555444431 22344445555566666666665543111 12234555556666777888887777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 358 ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
+..-+ ..--+.+|..+|+|++|+.+..++..... --..+-..|..-+...+++-+|.+++.+..
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~d-------e~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKD-------ELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHH-------HHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 65432 12346778888999999888877643210 001222567777788888888888777655
Q ss_pred H
Q 011226 438 K 438 (490)
Q Consensus 438 ~ 438 (490)
.
T Consensus 1027 s 1027 (1265)
T KOG1920|consen 1027 S 1027 (1265)
T ss_pred c
Confidence 4
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.67 E-value=6.9 Score=34.00 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
++.....|..+|.+.+|.++.+.....+. .+...+-.++..+...||--.|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455667777777777777777666432 456666677777777777666666665553
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.54 E-value=8.7 Score=33.41 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcH------HHH-HHHhhCCCCCCHHHHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP------VML-RRLKMEKVEVSEASKKLL 484 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------~~~-~~m~~~~~~p~~~~~~~l 484 (490)
++......|..+|.+.+|.++.++.+..+| .+...|..|+..|...|+.-. .+- ......|+..|....+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy 359 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWY 359 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHh
Confidence 455667789999999999999999999999 999999999999999999322 222 223455888887766554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.4 Score=35.63 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=75.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
.-+...|++++|..-|.++++...+ .........|..-..++.+.+.++.|+.-..+.++++| ....+...-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~--~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPS--TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCcc--ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHH
Confidence 3467899999999999999998621 00011134455556788899999999999999999998 67777777788898
Q ss_pred hcCCCcHHHHHHHhhCCCCCCHH
Q 011226 457 AAGRTSPVMLRRLKMEKVEVSEA 479 (490)
Q Consensus 457 ~~g~~~~~~~~~m~~~~~~p~~~ 479 (490)
+..++.+++-++-+-....|...
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchH
Confidence 88778888877766666666654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.38 E-value=7.4 Score=37.49 Aligned_cols=151 Identities=11% Similarity=0.004 Sum_probs=77.5
Q ss_pred hccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 011226 66 RDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEAL 145 (490)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 145 (490)
.-.|+++.|-.++..+. ....+.+.+.+.+.|-.++|+++- +|... -.....+.|+++.|.++
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhh---hhhhhhhcCcHHHHHHH
Confidence 34566666655443332 222344555566666666665443 12111 11122345666666666
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 011226 146 LEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV 225 (490)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 225 (490)
..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-- 722 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-- 722 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc--
Confidence 54432 234566666666666776666666654432 3445555666666665555555555544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 226 AADWTTFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
..|. + ..+|...|+++++.+++..-
T Consensus 723 ~~N~-A----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KNNL-A----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccch-H----HHHHHHcCCHHHHHHHHHhc
Confidence 2222 1 12344456666666666543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.06 E-value=4.5 Score=35.44 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 349 RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
++++++.++..=+..|+-||..++..+|+.+.+.+++.+|.++...|+..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44455555555555555556555555666555555555555555555444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.00 E-value=4.8 Score=35.30 Aligned_cols=136 Identities=12% Similarity=0.064 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------ccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELEN----------RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (490)
.+|...-| .|.++|.....|+.-....-.+.. .|......+...++..-....+++.+...+-+++...
T Consensus 16 l~p~~rr~-~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~ 94 (418)
T KOG4570|consen 16 LSPAGRRY-LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSP 94 (418)
T ss_pred CCchhcch-hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCc
Confidence 55544332 356666666666654443323322 2334455566666666666778889988887776431
Q ss_pred ---CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 295 ---PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 295 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
..++. +-.++++.+. .-++++++.++..=...|+-||.++++.+|+.+.+.+++.+|..+.-.|...
T Consensus 95 ~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 95 NAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 12222 2223333333 3467789988888889999999999999999999999999999988888764
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.76 E-value=36 Score=39.06 Aligned_cols=314 Identities=11% Similarity=0.008 Sum_probs=166.0
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGM--NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMT 139 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 139 (490)
..+-.+.+.+.+|+-.++.-..... .-....|-.+...|+..+++|...-+...-.. +...+.. |-.....|++
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl~~q-il~~e~~g~~ 1465 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSLYQQ-ILEHEASGNW 1465 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccHHHH-HHHHHhhccH
Confidence 3345567788888888887411110 11222344445588888998888777764211 2233333 3345677999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHH-HHHHHHHcCChhHHHHHHHH
Q 011226 140 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV-WMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~ 218 (490)
..|...|+.+.+.+. +...+++-++......|.++.+....+-.... ..+....++. =+.+.-+.++++.....+.
T Consensus 1466 ~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999998763 34677888887777788888777766555443 2333333333 3445577888887777665
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHccCCC--------C-HHHHHHHHHHHHhcCChhHHHHHH
Q 011226 219 MKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHR--------D-LSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
.+ ...++.+.. ++....+.. +.-.-.+.++.+...-+.| + ...|..++..+.-.. -....
T Consensus 1543 ---~~-n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l~~~~ 1613 (2382)
T KOG0890|consen 1543 ---DR-NIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----LENSI 1613 (2382)
T ss_pred ---cc-cccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----HHHHH
Confidence 22 223333321 333333322 2222222333333221111 0 122333333222111 01111
Q ss_pred HHHHHhCCCCCchh------HHHH---HHHHHhcCChhhHHHHHHH-HHhc----CC-CCChhhHHHHHHHHHhcCChhH
Q 011226 288 RSLRLAFPNTANIS------YLNM---IQVLVNLKDLPGAEKCFKE-WESG----CA-TYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 288 ~~~~~~~~~~~~~~------~~~l---~~~~~~~~~~~~a~~~~~~-~~~~----~~-~~~~~~~~~li~~~~~~~~~~~ 352 (490)
+... +..++..+ |..- .+.+.+ ..+-+--+++ +... +. .--..+|-...+.....|+++.
T Consensus 1614 ~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1614 EELK--KVSYDEDSANNSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHhh--ccCccccccccchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1111 11221111 1111 111111 1111111111 1111 11 1134577778888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|...+-...+.+ .| ..+.....-+-+.|+...|+.++++.+...
T Consensus 1689 A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1689 AQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 998887777754 22 344455667789999999999999999775
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.76 E-value=11 Score=33.01 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCC---CCCCHhHHHHHHHHHHH-cC-CHHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCCCcHHH
Q 011226 106 IDAAENYFVDLPE---TSKNHLTYGSLLNCYCK-EL-MTEKAEALLEKMKEL-NLGFSSMPFNSLMTLYAKTGHPEKIPA 179 (490)
Q Consensus 106 ~~~a~~~~~~~~~---~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 179 (490)
+.+|+++|+.... .-.|..+-..+++.... .+ ....-.++.+-+... +-.++..+...++..++..++|.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555555552211 22355555555555444 11 122222333333322 334666677777777777777777777
Q ss_pred HHHHHHHC-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHH-----HHHCCCCCCCHHHHHHHHHHH
Q 011226 180 IIQEMKAS-SIMPDSYTYNVWMRALAAVNDISGAERVIEE-----MKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 180 ~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~l~~~~ 239 (490)
+++..... +..-|...|..+++.....||..-..++.++ +.+. +++.+...-..+-..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~-~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRN-NVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeec-CCcCCHHHHHHHHHHH
Confidence 77766554 4455667777777777777777655555443 1222 2555555544444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.94 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
..|..+...+...|++++|+..|+++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356666777777778888888777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.50 E-value=21 Score=35.93 Aligned_cols=370 Identities=12% Similarity=0.094 Sum_probs=173.0
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCC----CChhhHHHH-HHHHHhhCCHHHHHHHHhhcCC-----CCCCHhHHHHHHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMN----KTVSDQAIH-LDLVAKVQGIDAAENYFVDLPE-----TSKNHLTYGSLLN 131 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~li~ 131 (490)
++.+.+.+... |...++...+.--. +-...+..+ +..+...++...|.+.++.+.. ..|...++..++.
T Consensus 107 ~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 107 ARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 44444444444 88888876443211 222233333 2233333788888888877766 2233334444554
Q ss_pred HHH--HcCCHHHHHHHHHHHHhCCC---------CCCcchHHHHHHHHH--hcCCCCcHHHHHHHHHH-------CC-C-
Q 011226 132 CYC--KELMTEKAEALLEKMKELNL---------GFSSMPFNSLMTLYA--KTGHPEKIPAIIQEMKA-------SS-I- 189 (490)
Q Consensus 132 ~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~-------~~-~- 189 (490)
+.. +.+..+.+.+.++++..... .|-..+|..+++.++ ..|+++.+...++++.+ .. .
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~ 265 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWP 265 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 443 34556777777776633211 234566667776554 46666676666555532 10 0
Q ss_pred --C-------------------CCHhh---------HHHHHH--HHHHcCChhHHHHHHHHHHHC-------CCCCCCH-
Q 011226 190 --M-------------------PDSYT---------YNVWMR--ALAAVNDISGAERVIEEMKRD-------GRVAADW- 229 (490)
Q Consensus 190 --~-------------------p~~~~---------~~~l~~--~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~- 229 (490)
. |.... ...++. ..+..+..++|.+++++..+. ....+..
T Consensus 266 ~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~s 345 (608)
T PF10345_consen 266 SWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSES 345 (608)
T ss_pred CcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcC
Confidence 0 11111 111222 223344444555544443321 0011111
Q ss_pred -------HHHHHHHH---------HHHHcCCHHHHHHHHHHHHHccCC-CC-------HHHHHHHHHHHHhcCChhHHHH
Q 011226 230 -------TTFSNLAS---------IYVEAGLFEKAERALKELENRNAH-RD-------LSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 230 -------~~~~~l~~---------~~~~~~~~~~A~~~~~~~~~~~~~-~~-------~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
..|...+. ..+-.+++..|...++.+.+.... |+ ...+....-.+-..|+.+.|..
T Consensus 346 l~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~ 425 (608)
T PF10345_consen 346 LSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALY 425 (608)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 11211222 223468899999999988763211 11 2222222233445699999999
Q ss_pred HHH--------HHHHhCCCCCchhHHH--HHHHHHh--cCChhh--HHHHHHHHHhc---CCCCChhhHHHH-HHHHHhc
Q 011226 286 IWR--------SLRLAFPNTANISYLN--MIQVLVN--LKDLPG--AEKCFKEWESG---CATYDIRVTNVM-IGAYAKE 347 (490)
Q Consensus 286 ~~~--------~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~~--a~~~~~~~~~~---~~~~~~~~~~~l-i~~~~~~ 347 (490)
.|. .....+...+..++.. ++..+.. ..+.++ +.++++.+... .+..+..++..+ +.++...
T Consensus 426 ~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~ 505 (608)
T PF10345_consen 426 QYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTF 505 (608)
T ss_pred HHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhC
Confidence 997 3333343333333322 1112222 222233 67777766542 222233333443 3333322
Q ss_pred CC--hhHHHHHHHHHHH-c-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC--CHHHH----
Q 011226 348 GR--LENAEELKERARR-R-GADPNAK----TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETI---- 413 (490)
Q Consensus 348 ~~--~~~a~~~~~~~~~-~-~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p--~~~~~---- 413 (490)
.. ..++...+....+ . ....+.. +++.+-..+. .|+..+..+..........+ .| ....|
T Consensus 506 ~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k-----~~d~~~~LW~~v~ 579 (608)
T PF10345_consen 506 EPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKK-----SSDYSDQLWHLVA 579 (608)
T ss_pred CccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh-----hhhhhhHHHHHHH
Confidence 22 2244444433332 1 1111221 2222222333 67777766655554433211 02 23444
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 414 -RTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 414 -~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
..+...+...|+.++|.....+...
T Consensus 580 ~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 580 SGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 2334457788999999988877644
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.12 E-value=2.3 Score=39.48 Aligned_cols=89 Identities=7% Similarity=-0.072 Sum_probs=39.7
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011226 309 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 388 (490)
+...|+++.+...+...... +.....+...+++.....|++++|..+-..|....+. +..........--..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34455555555555443322 1112334444555555555555555555555544333 222222222222333445555
Q ss_pred HHHHHHHHhcC
Q 011226 389 VDCLEKAIDTG 399 (490)
Q Consensus 389 ~~~~~~~~~~~ 399 (490)
.-.|++.....
T Consensus 411 ~~~wk~~~~~~ 421 (831)
T PRK15180 411 YHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccC
Confidence 55555555443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.84 E-value=9.6 Score=31.05 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=51.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 200 MRALAAVNDISGAERVIEEMKRDGRVAADWT----TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
...+...|++++|...++..... +.|.. +-..|.+.....|.+|+|+..++.....+. .......-.+++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34566677777777777766643 12211 122345556667777777777776654332 1222333445666
Q ss_pred hcCChhHHHHHHHHHHHhC
Q 011226 276 QTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~ 294 (490)
..|+-++|..-|......+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777766654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.55 E-value=1.3 Score=23.96 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.|..+...+...|++++|++.|++.++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556667777777777777777777664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.43 E-value=2.4 Score=37.53 Aligned_cols=53 Identities=19% Similarity=0.069 Sum_probs=25.5
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
.|.+.|.+++|+..|.......+. |++++..-..+|.+..++..|..=....+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 455555555555555554433221 44444444455555555554444444333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.25 E-value=26 Score=35.17 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 232 FSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
-..|+..|...+++..|++++-..+
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhcc
Confidence 3447788888888888888776654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.26 Score=38.48 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=25.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444445555555555555544433444555555555555554455444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.17 E-value=48 Score=38.15 Aligned_cols=319 Identities=10% Similarity=0.027 Sum_probs=158.2
Q ss_pred HHHHHhhCCHHHHHHHHhhcCC----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 011226 97 LDLVAKVQGIDAAENYFVDLPE----TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG 172 (490)
Q Consensus 97 ~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (490)
..+-.+++.+..|.-.++.-.. .......|..+...|..-+++|...-+...-.. +...++ -|......|
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~~g 1463 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEASG 1463 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHhhc
Confidence 3445577778888888877322 111122344444578888888877777654111 122233 333345678
Q ss_pred CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHH
Q 011226 173 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN-LASIYVEAGLFEKAERA 251 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~ 251 (490)
++..|...|+.+.+.+ ++...+++-++......|.++..+...+-.... ..+....++. =+.+--+.++||.....
T Consensus 1464 ~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred cHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 8888888888887754 223666777777777788888777766666554 3333333333 23444566777776665
Q ss_pred HHHHHHccCCCCHHHHHHH--HHHHHhcC--ChhHHHHHHHHHHHhCCCC------C---chhHHHHHHHHHhcCChhhH
Q 011226 252 LKELENRNAHRDLSAYQFL--ITLYGQTG--NLSEVYRIWRSLRLAFPNT------A---NISYLNMIQVLVNLKDLPGA 318 (490)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~~------~---~~~~~~l~~~~~~~~~~~~a 318 (490)
.. + .+..+|... .....+.. |.-.-.+..+.+++.-+.| . ...|..++....-.. .+.-
T Consensus 1541 l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~ 1612 (2382)
T KOG0890|consen 1541 LS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENS 1612 (2382)
T ss_pred hh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHH
Confidence 54 1 122233322 22222222 1111112333332221111 0 012223322221111 0101
Q ss_pred HHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHH-HHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHH
Q 011226 319 EKCFKEWES-GCATYDIRVTNVMIGAYAKEGRLENAEELKER-ARRRGADP-----NAKTWEIFSDYYLRNGDMKLAVDC 391 (490)
Q Consensus 319 ~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~ 391 (490)
.+.+..... ....-+...|..-+..-....+..+-+--+++ +......| -..+|....+..-.+|+++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 111111000 00011111121111111111111221111111 11111122 234677777777789999999998
Q ss_pred HHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 392 LEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+-++.+.+ -+..+--...-+...|+...|..++++.++...
T Consensus 1693 ll~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 88887775 234455666778899999999999999987554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.16 E-value=8.8 Score=29.71 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=25.9
Q ss_pred hCCHHHHHHHHhhcCCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 011226 103 VQGIDAAENYFVDLPETSKNH---LTYGSLLNCYCKELMTEKAEALLEKMKELN 153 (490)
Q Consensus 103 ~g~~~~a~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 153 (490)
.++.+++..+++.+.-..|+. .++..+ .+...|+|++|.++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 455666666665555433332 223222 2445666666666666666543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.93 E-value=1 Score=24.38 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+|..+...|...|++++|...|++..+..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678888999999999999999999998765
|
... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.61 E-value=5.6 Score=38.26 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=45.4
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011226 170 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE 249 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 249 (490)
+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|......+ .|+-.+...|+-+...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~----------~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARDLG----------SLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcchh----------hhhhhhhhcCChhHHH
Confidence 4455555555443321 34445556666666666666655555544332 3444444455544444
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011226 250 RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
.+-....+.|. .| .-.-+|...|+++++.+++.
T Consensus 713 ~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHH
Confidence 43333333332 11 12223445555555555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=17 Score=32.19 Aligned_cols=233 Identities=13% Similarity=0.002 Sum_probs=114.6
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHccCCCCHHH
Q 011226 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF----EKAERALKELENRNAHRDLSA 266 (490)
Q Consensus 191 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~ 266 (490)
+|.......+.++...|..+ +...+..+.+. ++...-...+.+++..|+. +++...+..+... .++...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 46666666666666666533 33333334332 3445555566666666653 3566666655322 245444
Q ss_pred HHHHHHHHHhcCCh-----hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 267 YQFLITLYGQTGNL-----SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 267 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
-...+.++...+.. ..+...+.... ..++..+-...+.++.+.++. .+...+-.+.+. ++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHH
Confidence 44455555544321 12222222222 222444445556666666653 344444444432 2333444444
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHH
Q 011226 342 GAYAKEG-RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 420 (490)
Q Consensus 342 ~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 420 (490)
.++...+ +...+...+..+.. .++...-...+.++.+.|+ ..|+..+-+.++.+ + .....+.++
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---------~--~~~~a~~AL 245 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---------T--VGDLIIEAA 245 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---------c--hHHHHHHHH
Confidence 4454432 23345555555553 2355555566666666665 45555555555543 1 223455666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 421 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 421 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
...|+. +|...+..+.+.. +|..+-..-+.++
T Consensus 246 g~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 666664 4666666666544 2444444444443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.11 E-value=2.7 Score=34.67 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCC----CCHhHHHHHHHH
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETS----KNHLTYGSLLNC 132 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~li~~ 132 (490)
+...+..+.+.+++++|+...+.-.+.. +.+...-..+++.++-.|++++|..-++...... +-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445666677777777777777766664 3455556677777777777777766665554422 223345555543
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=88.04 E-value=30 Score=34.44 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011226 319 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 397 (490)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 397 (490)
....+.+...-+-.+......++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+.-+.++|+....-.+...+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444433333444555566666666666666666665544311 223344444555566665555544444443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.78 E-value=32 Score=34.54 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHh---cCChhhHHHHHHHHHhc
Q 011226 300 ISYLNMIQVLVN---LKDLPGAEKCFKEWESG 328 (490)
Q Consensus 300 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 328 (490)
.-+..||..|.+ ..+...|.+++-.+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 456677777765 45666777776665543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.66 E-value=31 Score=34.18 Aligned_cols=152 Identities=16% Similarity=0.038 Sum_probs=72.5
Q ss_pred HHHcCCHHHHHHHHHHHHh-------CCCCCCcchHHHHHHHHHhcC-----CCCcHHHHHHHHHHCCCCCCHhhHHHHH
Q 011226 133 YCKELMTEKAEALLEKMKE-------LNLGFSSMPFNSLMTLYAKTG-----HPEKIPAIIQEMKASSIMPDSYTYNVWM 200 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 200 (490)
+....|++.|+..|+...+ .+ ......-+..+|.+.. +.+.|..++....+.|. |+...+...+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 3355677777777777765 33 3334555555555543 23446666666666552 2333322222
Q ss_pred HHHHH-cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 201 RALAA-VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV----EAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 201 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
.-... ..+...|.++|...-+.| ..+ .+-.+..+|. -..+...|..++++....|. |....-...+..+.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G-~~~---A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAG-HIL---AIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYG 409 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcC-ChH---HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHc
Confidence 21111 134566777777766665 211 1112222222 12355666666666666552 22111112222233
Q ss_pred hcCChhHHHHHHHHHHHhC
Q 011226 276 QTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~ 294 (490)
. +.++.+.-.+..+.+.+
T Consensus 410 ~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 410 V-GRYDTALALYLYLAELG 427 (552)
T ss_pred c-ccccHHHHHHHHHHHhh
Confidence 3 55555555555554443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.50 E-value=19 Score=31.54 Aligned_cols=63 Identities=10% Similarity=0.270 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTANISYLNMIQVLVNLKDLPGAEKCFKE 324 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (490)
++..+...++..++..++|.+-+++|+..... ++..|...|..+|......|+..-..++..+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 44555555666666666666666666554433 3444555566666666666665555444443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.44 E-value=35 Score=34.49 Aligned_cols=315 Identities=9% Similarity=-0.050 Sum_probs=160.0
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEK 141 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 141 (490)
+....+.|++..+.++...+...-.. ....|..+...+ .....++...+++.-...+.....-...+..+.+.+++..
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~pL~-~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDYPLY-PYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCCCcH-hHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 34455678888887777766433221 111222222211 1235677777777776644444455556666777788887
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHH--HHHHHH
Q 011226 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAE--RVIEEM 219 (490)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~--~~~~~~ 219 (490)
.+..+.. .+.+...-.....+....|+.++|......+-..|- ..+..++.++..+.+.|.+.... +=++.+
T Consensus 118 ~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 7763311 123444445666777778887777777666655542 24566777777777666544322 222222
Q ss_pred HHCCCCCCCHHHHHHHHHHH-----------HH-cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH--HhcCChhHHHH
Q 011226 220 KRDGRVAADWTTFSNLASIY-----------VE-AGLFEKAERALKELENRNAHRDLSAYQFLITLY--GQTGNLSEVYR 285 (490)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~~-----------~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~ 285 (490)
...| +...-..+...+ .. ..+...+...+.. +.++...-..++-++ ....+.+.|..
T Consensus 192 l~~~----~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 192 MKAG----NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHCC----CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 2222 111111111111 00 0111112111111 112221111111122 23456688888
Q ss_pred HHHHHHHhCCC-CCc--hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 286 IWRSLRLAFPN-TAN--ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 286 ~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
++........- +.. .....+.......+..+++...+....... .+......-+......++++.+...+..|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 88876444321 111 123333333333333556666666543322 2444455555666688888888888888754
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 363 RGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 363 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
.. .-...-.--+.+++...|+.++|...|+.+.
T Consensus 341 ~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 341 EA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred hh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 31 2133333445667677888888888888874
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.97 E-value=13 Score=28.92 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=24.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 347 EGRLENAEELKERARRRGADPNAKTWEI-FSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.++.+++..+++.|.-. .|+..-... -...+...|++.+|+++|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 45556666666555542 333222111 1223445566666666666665554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.78 E-value=42 Score=34.82 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=58.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------CHHHHHHH-----HHHHHhc--CCCCCCC--
Q 011226 343 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG--------DMKLAVDC-----LEKAIDT--GRGDGGK-- 405 (490)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------~~~~A~~~-----~~~~~~~--~~~~~~~-- 405 (490)
.|......+-+..+++.+....-.++..-.+.++..|...= +-+++.+. +..+++. ...|+..
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 35555666777777777765444445555555555554211 11122222 1222211 1111111
Q ss_pred CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH------------c-CCCCCHHhHHHHHHHHHhc
Q 011226 406 WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK------------A-VDDLGVEVFEPLIRTYAAA 458 (490)
Q Consensus 406 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~-~~~~~~~~~~~l~~~~~~~ 458 (490)
..|....|....-.+.+.|+.++|..++-..+. . ...++...|..++..|...
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 012233333333334578888888887765543 1 2335788888888888776
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.56 E-value=2.2 Score=24.33 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.36 E-value=2.2 Score=24.34 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
.+++.+...|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777888888888888888877655
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.00 E-value=13 Score=29.83 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcC----C-------hHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEK----D-------VDGAEGFLEILKKAVDDLGVEVFEPLI 452 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 452 (490)
+++|+.-|++++... |+ ..++..+..+|...+ + +++|...|+++...+ |+...|+.-+
T Consensus 51 iedAisK~eeAL~I~--------P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~--P~ne~Y~ksL 120 (186)
T PF06552_consen 51 IEDAISKFEEALKIN--------PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED--PNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHH
Confidence 456666777777766 77 678888888876544 2 556666666666666 5777777777
Q ss_pred HHHHh
Q 011226 453 RTYAA 457 (490)
Q Consensus 453 ~~~~~ 457 (490)
....+
T Consensus 121 e~~~k 125 (186)
T PF06552_consen 121 EMAAK 125 (186)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66643
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.89 E-value=41 Score=33.85 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=96.2
Q ss_pred HhHHHHHHHHh-ccCCchHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhhCCHHHHHHHHhhcCC--C--CCCHh-
Q 011226 56 WEVGDTLKKLR-DRKLYYPALKLSENMEKRGMNKTVS-----DQAIHLDLVAKVQGIDAAENYFVDLPE--T--SKNHL- 124 (490)
Q Consensus 56 ~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~--~--~~~~~- 124 (490)
.+...+...|. ...++++|...+++.....-+++.. ....++..+.+.+... |....+...+ . .-+..
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34445566665 5688999999999885443333332 2234456666666555 8888887666 1 11122
Q ss_pred -HHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCcchHHHHHHHHH--hcCCCCcHHHHHHHHHHCCC--------
Q 011226 125 -TYGSL-LNCYCKELMTEKAEALLEKMKELN---LGFSSMPFNSLMTLYA--KTGHPEKIPAIIQEMKASSI-------- 189 (490)
Q Consensus 125 -~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~-------- 189 (490)
.+..+ +..+...+++..|.+.++.+.... ..|-..++-.++.+.. ..+..+++.+.++.+.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 23333 233333489999999998886642 2233444455555544 35556778888887743321
Q ss_pred -CCCHhhHHHHHHHH--HHcCChhHHHHHHHHHH
Q 011226 190 -MPDSYTYNVWMRAL--AAVNDISGAERVIEEMK 220 (490)
Q Consensus 190 -~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 220 (490)
.|...+|..+++.+ ...|+++.+...++++.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23456676676644 55677666666555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.27 E-value=19 Score=29.65 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHH
Q 011226 350 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 429 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 429 (490)
-+.|...|-.+...+.--++..-..+ ..|....+.++++.++.+.++..... -.+|+..+.+|+..+.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~---~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPD---DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHhcchhhh
Confidence 36777878777776544444444444 44444678888888888888774221 247788888888888888888877
Q ss_pred H
Q 011226 430 E 430 (490)
Q Consensus 430 ~ 430 (490)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.17 E-value=2.1 Score=22.80 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+-.+..++.+.|++++|.+.|+++++.-|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 44567788899999999999999998775
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.12 E-value=36 Score=32.46 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHH
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLN 304 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (490)
.+.|....-+++..+..+..+.-...+..+|..-| .+...|..++.+|... ..+.-..+|+++.+.... |...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 34444455556666666655655556666655533 3445555666666655 345555566655554332 2222222
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 011226 305 MIQVLVNLKDLPGAEKCFKEWE 326 (490)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~ 326 (490)
|...|. .++...+..+|..+.
T Consensus 138 La~~yE-kik~sk~a~~f~Ka~ 158 (711)
T COG1747 138 LADKYE-KIKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHH-HhchhhHHHHHHHHH
Confidence 333222 255555555555543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.50 E-value=2 Score=22.86 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 374 IFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.+..++.+.|++++|.+.|+++++..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34556667777888888888777765
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.96 E-value=3.1 Score=22.40 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+|..+...|...|++++|.+.|++..+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44555566666777777777777666543
|
... |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.79 E-value=9.7 Score=36.63 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHH
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLN 304 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (490)
+.|-+...|...-.+.-.|+...|...+.......+...-+....|...+.+.|...+|..++.+..... ...+.++..
T Consensus 603 ~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~ 681 (886)
T KOG4507|consen 603 NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLS 681 (886)
T ss_pred CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHh
Confidence 3344433333333333456777777766665443222223344455666666677777777777665544 234456667
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 011226 305 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 344 (490)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (490)
+.+++....++++|++.|+...+..++ +...-+.|...-
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIR 720 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHH
Confidence 777777777888888888777766554 555555554433
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.45 E-value=8.2 Score=37.08 Aligned_cols=105 Identities=14% Similarity=0.010 Sum_probs=82.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 345 AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
...|+...|...+.........-..+....+...+.+.|....|-.++.+.+.... ..+-++..+.+++....
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-------sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-------SEPLTFLSLGNAYLALK 690 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-------cCchHHHhcchhHHHHh
Confidence 44688899999888877543333344556677777888888899999888877752 45678888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 425 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
+++.|++.|+++.++.+ .+...-+.|...-|.
T Consensus 691 ~i~~a~~~~~~a~~~~~-~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTT-KCPECENSLKLIRCM 722 (886)
T ss_pred hhHHHHHHHHHHHhcCC-CChhhHHHHHHHHHh
Confidence 99999999999999998 888888888776653
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.18 E-value=10 Score=28.31 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 011226 177 IPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 236 (490)
Q Consensus 177 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 236 (490)
..+-++.+....+.|++.....-+++|.+.+|+..|.++|+-+... +.+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3444555555667788888888888888888888888888887765 444444455444
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.47 E-value=4.1 Score=23.95 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=12.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRD 222 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~ 222 (490)
+..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 444555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.87 E-value=21 Score=26.70 Aligned_cols=71 Identities=11% Similarity=0.042 Sum_probs=46.4
Q ss_pred HHhcCCCCHHhHHHHHHHHhccCC--chHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC
Q 011226 47 LKSKKRVFKWEVGDTLKKLRDRKL--YYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE 118 (490)
Q Consensus 47 ~~~~~~~~~~~~~~ll~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 118 (490)
..+|.. +...+..--..|..... --+..+.++.+...++.|++......+.++-+.+++..|..+|+.+..
T Consensus 40 ~~hg~e-t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 40 MEHGPE-TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hhcCcc-cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334443 44444444333433222 225556666777777888888888888888888888888888888776
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.65 E-value=9.5 Score=30.65 Aligned_cols=97 Identities=10% Similarity=-0.030 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE----------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
++.|.+.++.....+. .|...++....++... .-+++|+.-|++++..+| ....++..+.++
T Consensus 7 FE~ark~aea~y~~nP-------~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-~~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-------LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-NKHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-------HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 4556666666555551 3455544444433322 235667777888888898 778888999999
Q ss_pred HHhcCC--C----cH-----HHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 455 YAAAGR--T----SP-----VMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 455 ~~~~g~--~----~~-----~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
|...+. . ++ +....-++...+|+..+++.-.+.+.
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 988877 1 11 22233345578999999987776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.35 E-value=35 Score=28.90 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=29.1
Q ss_pred CChhHHHHHHHHHHHCCC-CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH
Q 011226 207 NDISGAERVIEEMKRDGR-VAADW---TTFSNLASIYVEAGLFEKAERALKELENRNAHRDL 264 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 264 (490)
.++++|+..|+..-+.-. ...+. ..+......-...+++.+|.++|+++....+..+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 355556655555544210 11111 11222333344567777888888777765554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 3e-11
Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 11/220 (5%)
Query: 28 RLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDR-------KLYYPALKLSEN 80
R K D +Q Q LK+K ++ R + K L+
Sbjct: 25 RWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTR 84
Query: 81 MEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTE 140
+ + + ++ A + + S + C
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 141 KAEALLEKMKEL---NLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 197
A LL + +N++M +A+ G +++ ++ +K + + PD +Y
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 198 VWMRALAAVNDISGA-ERVIEEMKRDGRVAADWTTFSNLA 236
++ + + +G ER +E+M ++G T L+
Sbjct: 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 6e-05
Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 4/138 (2%)
Query: 267 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK---CFK 323
L+ +L A + L + + LP A
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 324 EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383
+ + N ++ +A++G + + + G P+ ++ R
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 384 -DMKLAVDCLEKAIDTGR 400
D CLE+ G
Sbjct: 215 QDAGTIERCLEQMSQEGL 232
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 4e-11
Identities = 63/524 (12%), Positives = 137/524 (26%), Gaps = 155/524 (29%)
Query: 11 KNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKL 70
K++ K L + D + + + L ++ + + V + L+ + K
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI--NYKF 93
Query: 71 YYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL 130
+K +E + M + +Q + + D +K +++
Sbjct: 94 LMSPIK-TEQRQPSMMTRMYIEQ---------------RDRLYNDNQVFAKYNVSR---- 133
Query: 131 NCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS--S 188
+ + +ALLE N+ + G + S +
Sbjct: 134 ----LQPYLKLRQALLELRPAKNV-----------LID---G-----------VLGSGKT 164
Query: 189 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 248
+ AL +V +M D ++ W N
Sbjct: 165 WV-----------ALDVCLS----YKVQCKM--DFKIF--WLNLKNC----------NSP 195
Query: 249 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 308
E L+ L+ D + + + RL L V
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLL----V 249
Query: 309 LVNLKDLPGAEKCFKEWESGC----ATYDIRVTNVMIGAYAKEGRLEN------------ 352
L+N+++ K + + C T +VT+ + A L++
Sbjct: 250 LLNVQN----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 353 ---------AEELKERARRR--------GA--DPNAKTWEIFSDYYLRNGDMKLAVDCLE 393
++L TW D + KL +E
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW----DNWKHVNCDKLT-TIIE 360
Query: 394 KAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVDDLGVEVFE 449
+++ V R + F++ L ++ V V V
Sbjct: 361 SSLN---------VLEPAEYR---KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 450 PLIRTYAAAGRTS-------PVMLRRLKMEKVEVSEASKKLLEA 486
+ Y+ + P + LK++ + +++
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 2e-07
Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 80/280 (28%)
Query: 9 RTKNIAKRSKKHLEEALYDRLFKKGS---SDVSVRQQLNQFLKSKKRVFKW------EVG 59
+ I + S LE A Y ++F + S + L + W +V
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--------WFDVIKSDVM 405
Query: 60 DTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVD---L 116
+ KL L +EK+ T+S +I+L+L K++ A VD +
Sbjct: 406 VVVNKLHKYSL----------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 117 PETSK--------------NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFN 162
P+T +H+ + L N E+ +M L+ F
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGH-HLKNI----EHPERMTLF--RMVFLDFRF------ 502
Query: 163 SLMTLYAKTGH-------PEKIPAIIQEMK--ASSIMPDSYTYNVWMRALAAVNDISGAE 213
L K H I +Q++K I + Y + A+ ++ + E
Sbjct: 503 ----LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFLPKIE 556
Query: 214 RVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK 253
+ + + +T +A + + +FE+A + ++
Sbjct: 557 ENL--------ICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 49/320 (15%), Positives = 90/320 (28%), Gaps = 35/320 (10%)
Query: 95 IHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNL 154
+ L+ + + AE+Y + K+ + A+ K+ E++
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID- 335
Query: 155 GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-TYNVWMRALAAVNDISGAE 213
++ + + ++G K + P+ T+ VN IS A
Sbjct: 336 PYNLDVYPLHLASLHESGEKNK--LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393
Query: 214 RVIE---EMKRDGRVAADWTTFSNLASIYVEAGLFEKA----ERALKELENRNAHRDLSA 266
R M W A + G ++A A L
Sbjct: 394 RYFSKSSTMDPQ--FGPAWI---GFAHSFAIEGEHDQAISAYTTAA-RLFQGTHL----P 443
Query: 267 YQFLITLYGQTGNLSE---VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 323
Y FL + Q GN+ + S L + + V N D+ A F+
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQ--SSYALF-QYDPLL-LNELGVVAFNKSDMQTAINHFQ 499
Query: 324 E-WESGCATYDIRVTNVMI-----GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 377
T AY K + A + + + +A +
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIAL 558
Query: 378 YYLRNGDMKLAVDCLEKAID 397
YL LA+ L +++
Sbjct: 559 VYLHKKIPGLAITHLHESLA 578
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 30/311 (9%), Positives = 78/311 (25%), Gaps = 45/311 (14%)
Query: 117 PETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEK 176
P+ + ++ A L + LN + + L+ E+
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228
Query: 177 IPAIIQEM-KASSIMPDS-YTYNVWMRALAAVNDISGA----ERVIEEMKRDGRVAADWT 230
+ + +A P + ++ A ++ +E + + +
Sbjct: 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL----- 283
Query: 231 TFSNLASIYVEAGLFEKAERALKELENRNAHR------------------DLSAYQFLIT 272
+ Y R R L +
Sbjct: 284 -HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342
Query: 273 LYGQTGNLSEVYRIW-RSLRLAFPNT-ANISYLNMIQVLVN-LKDLPGAEKCFKEWESGC 329
L+ E + + + +L + +K A F E
Sbjct: 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE----- 397
Query: 330 ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 389
I + KE + +++ + + +++ + + N M+ A
Sbjct: 398 -GVKINQKS-----REKEKMKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQAD 450
Query: 390 DCLEKAIDTGR 400
+ E+ +++G
Sbjct: 451 EDSERGLESGS 461
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 29/189 (15%), Positives = 58/189 (30%), Gaps = 15/189 (7%)
Query: 120 SKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPA 179
N + Y + + A L + L + + K + A
Sbjct: 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE------CMAMTVQILLKLDRLDL--A 149
Query: 180 IIQEMKASSIMPDSYTYNV---WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 236
+ K D+ + W+ A + A + +EM + + + A
Sbjct: 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQA 207
Query: 237 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE-VYRIWRSLRLAFP 295
+ ++ G +E AE L+E ++++ L+ L G E R L+ A
Sbjct: 208 ACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266
Query: 296 NTANISYLN 304
+ I
Sbjct: 267 SHPFIKEYR 275
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 7e-05
Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 10/219 (4%)
Query: 179 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI 238
++ E+K SS P+ ++ LA+ + ++ + T ASI
Sbjct: 52 VVLDEIKPSS-APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110
Query: 239 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS-LRLAFPNT 297
Y + A R L + L + + + L + + T
Sbjct: 111 YFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164
Query: 298 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELK 357
+ + + L A F+E C+ + + N + +GR E AE +
Sbjct: 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVL 223
Query: 358 ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396
+ A + + + +T G + +
Sbjct: 224 QEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQL 261
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 27/181 (14%), Positives = 55/181 (30%), Gaps = 23/181 (12%)
Query: 234 NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSL 290
++ G A + ++ + A+Q+L T + R R L
Sbjct: 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALR--RCL 125
Query: 291 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW--------------ESGCATYDIRV 336
L P+ + + + N A + ++W E G +
Sbjct: 126 ELK-PDNQT-ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183
Query: 337 TNVMIGAYAKEGRLENAEELKERARRRGAD-PNAKTWEIFSDYYLRNGDMKLAVDCLEKA 395
+ ++G+ + +EL A R + + +G+ AVDC A
Sbjct: 184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243
Query: 396 I 396
+
Sbjct: 244 L 244
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-05
Identities = 34/251 (13%), Positives = 72/251 (28%), Gaps = 27/251 (10%)
Query: 235 LASIYVEAGLFEKA----ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR-- 288
A + + G ++A + AL+EL + + A L + G L+ + +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 289 ---SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF-------KEWESGCATYDIRVTN 338
+ + + A S + ++L L A + E +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 339 VMIGAYAKEGRLENAEELKERA----RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK 394
+ RL+ AE + + L GD+ A L +
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 395 AIDTGR--GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP-- 450
+ W+ ++ +R + +++ D A +L K +
Sbjct: 200 LENLLGNGKYHSDWISNANKVR--VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257
Query: 451 -LIRTYAAAGR 460
+ R G
Sbjct: 258 NIARAQILLGE 268
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 44/398 (11%), Positives = 101/398 (25%), Gaps = 57/398 (14%)
Query: 13 IAKRSKKHLEEAL--YDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKL 70
A S + +A+ L G D + + + + +K+ + + + R ++
Sbjct: 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160
Query: 71 YYPALKLSENMEKRGMNKTVSDQAIHLD-LVAKVQGIDAAENYFVDLPETSKNHLTYGSL 129
L+ D + + + A L +
Sbjct: 161 LPSNTSLASFFGI-------FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213
Query: 130 LNCYCKELMTEKAEALLEKMKELNLG-FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS 188
N + L + L +++ + + A + ++ +
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD--AQVLLQESIN 271
Query: 189 IMPDSYTYNVWMRALAAVNDISGA----ERVIEEMKRDGRVAADWTTFSNLASIYVEAGL 244
+ P +Y LA + ++ ++ + + T+ + +Y
Sbjct: 272 LHPTPNSYIFLALTLADKENSQEFFKFFQKAVD-LNPE-----YPPTYYHRGQMYFILQD 325
Query: 245 FEKAERALK---ELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSLRLAFPNTA 298
++ A+ + L N Y L L + G +E + + FP
Sbjct: 326 YKNAKEDFQKAQSLNPENV----YPYIQLACLLYKQGKFTESEAFFN--ETKLK-FPTLP 378
Query: 299 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKE 358
+ ++L + D A K + AK +
Sbjct: 379 EV-PTFFAEILTDRGDFDTAIKQYDI--------------------AKRLEEVQEKIHVG 417
Query: 359 RARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396
G L A+ L KA
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 8e-05
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 61 TLKKLRDR-KLY----YPALKLSENME 82
LKKL+ KLY PAL + ME
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.9 bits (92), Expect = 4e-04
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 20/48 (41%)
Query: 140 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187
EK + +K+L SL LYA + PA+ +KA+
Sbjct: 18 EK-----QALKKLQ--------ASL-KLYA----DDSAPAL--AIKAT 45
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 9e-05
Identities = 19/185 (10%), Positives = 52/185 (28%), Gaps = 20/185 (10%)
Query: 230 TTFSNLASIYVEAGLFEKA----ERALKELENRNAHRDL-SAYQFLITLYGQTGN----- 279
+ +A Y + ++KA E AL+ + R + + + Y ++G+
Sbjct: 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242
Query: 280 --LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE----WESGCATYD 333
+ ++ R P+ + L A + +E + +
Sbjct: 243 EHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299
Query: 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCL 392
+ + Y + +L ++ + + + + A
Sbjct: 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFY 359
Query: 393 EKAID 397
K +
Sbjct: 360 RKVLK 364
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 20/172 (11%)
Query: 234 NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSL 290
LA +AG FE AER +L + + L +++ Q L ++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFST--LAI 60
Query: 291 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT----YDIRVTNVMIGAYAK 346
+ P A +Y N+ V L A + ++ A I + A
Sbjct: 61 KQN-PLLAE-AYSNLGNVYKERGQLQEAIEHYRH-----ALRLKPDFIDGYINLAAALVA 113
Query: 347 EGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAID 397
G +E A + A + +P+ + G ++ A C KAI+
Sbjct: 114 AGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 24/192 (12%), Positives = 55/192 (28%), Gaps = 23/192 (11%)
Query: 226 AADWTTFSNLASIYVEAGLFEKA----ERALKELENRNAHRDL-SAYQFLITLYGQTGNL 280
AA ++ A + A E+A + + N + A++ + +
Sbjct: 35 AAS--EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92
Query: 281 SEVYRIWRSLRLAF-----PNTANISYLNMIQVLVNLKDLPGAEKCFKE-----WESGCA 330
E + + + P+TA L+ L+ DL A +++
Sbjct: 93 PEAVQYIEKASVMYVENGTPDTA-AMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERL 151
Query: 331 TYDIRVTNVMIGAYAKEGRLENAEELKERA----RRRGADPN-AKTWEIFSDYYLRNGDM 385
+ ++ + + A ++ + P K L D
Sbjct: 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211
Query: 386 KLAVDCLEKAID 397
A C+ ++
Sbjct: 212 VAAQKCVRESYS 223
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 25/181 (13%)
Query: 232 FSNLASIYVEAGLFEKAERALK---ELENRNAHRDLSAYQFLITLYGQTGNLSE---VYR 285
+ + ++A A +L ++ YG T N +
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH----LPMLYIGLEYGLTNNSKLAERFFS 183
Query: 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE---------WESGCATYDIRV 336
++L +A P + + V + AEK F + E ++ +
Sbjct: 184 --QALSIA-PEDPFV-MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239
Query: 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396
N + K + A + +A NA T+ + G+ + AVD A+
Sbjct: 240 NN-LGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTAL 297
Query: 397 D 397
Sbjct: 298 G 298
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 18/180 (10%), Positives = 39/180 (21%), Gaps = 23/180 (12%)
Query: 234 NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSL 290
++ +A A + + A++ L + +
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALN--HAR 82
Query: 291 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW--------------ESGCATYDIRV 336
L P + + N + A + W D
Sbjct: 83 MLD-PKDIA-VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLN 140
Query: 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396
+A L A + +A+ Y + + A L +A+
Sbjct: 141 VQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAV 199
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 9e-04
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 25/214 (11%)
Query: 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERAL 252
S+ ++ L G + ++ K + L Y++ G E+A+ L
Sbjct: 4 SHHHHHHSSGLVPRGSHMGDQNPLKTDKGRDEARD---AYIQLGLGYLQRGNTEQAKVPL 60
Query: 253 K---ELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSLRLAFPNTANISYLNMI 306
+ E++ +A A+ L ++ YR ++L A + N
Sbjct: 61 RKALEIDPSSA----DAHAALAVVFQTEMEPKLADEEYR--KALASD-SRNARV-LNNYG 112
Query: 307 QVLVNLKDLPGAEKCFKE--WESGCATYDIRVTNVMIG-AYAKEGRLENAEELKERARRR 363
L K A + E ++ N +G + + A+E E++ R
Sbjct: 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN--LGLVSLQMKKPAQAKEYFEKSLR- 169
Query: 364 GADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAI 396
+ N +D + + A +
Sbjct: 170 -LNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.61 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.49 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.49 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.43 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.35 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.32 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.22 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.2 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.15 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.15 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.14 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.13 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.13 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.12 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.11 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.1 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.07 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.03 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.99 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.88 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.87 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.87 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.86 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.84 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.83 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.82 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.8 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.79 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.77 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.75 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.73 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.72 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.72 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.71 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.69 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.68 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.67 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.6 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.59 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.57 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.56 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.5 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.48 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.47 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.47 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.47 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.44 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.4 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.36 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.33 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.31 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.27 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.26 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.24 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.19 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.19 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.18 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.06 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.01 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.99 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.9 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.85 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.81 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.8 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.78 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.66 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.62 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.59 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.48 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.34 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.32 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.28 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.16 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.07 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.98 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.92 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.9 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.89 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.89 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.78 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.71 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.54 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.45 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.44 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.4 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.29 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.25 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.25 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.21 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.17 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.15 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.95 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.41 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.35 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.95 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.92 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.53 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.5 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.43 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.26 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.14 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.05 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.01 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.94 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.28 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.03 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.89 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.65 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.95 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.94 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.88 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.81 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.76 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.28 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 87.94 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.9 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 86.55 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.29 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.23 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 80.32 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-38 Score=309.14 Aligned_cols=301 Identities=9% Similarity=-0.011 Sum_probs=253.0
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 250 (490)
.|++++|.++|+++.+. +++..+++.++.++.+.|++++|..+|+++.+. .+.+..++..++.++.+.|++++|.+
T Consensus 285 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp HHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred cchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 34444444444444332 367888889999999999999999999999886 46678888999999999999999999
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 011226 251 ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA 330 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 330 (490)
+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.++
T Consensus 361 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 361 ISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp HHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999998654 357889999999999999999999999999886543 577899999999999999999999999998766
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-
Q 011226 331 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS- 409 (490)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~- 409 (490)
. +..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++..|.+.|++++|+++|+++.+... +.+..|+
T Consensus 439 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~p~~ 514 (597)
T 2xpi_A 439 G-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK--KTQSNEKP 514 (597)
T ss_dssp T-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HSCCCSGG
T ss_pred c-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh--ccccchhh
Confidence 4 788999999999999999999999999998643 3788999999999999999999999999988710 0003376
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHH
Q 011226 410 -SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKK 482 (490)
Q Consensus 410 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~ 482 (490)
..+|..++.+|.+.|++++|.+.++++.+.+| .+..+|..++.+|.+.|++.+++...-+...+.|+.....
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 78999999999999999999999999999998 8999999999999999997776654444555677765443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=295.72 Aligned_cols=404 Identities=11% Similarity=-0.002 Sum_probs=355.6
Q ss_pred CCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHh
Q 011226 35 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFV 114 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 114 (490)
+...+..+++.+.. ..|+..++..++..|.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.++|+
T Consensus 99 ~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 99 QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred CchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 34455555555553 3456688888999999999999999999988544 5788899999999999999999999999
Q ss_pred hcCC-C----------------CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------------------
Q 011226 115 DLPE-T----------------SKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNL----------------------- 154 (490)
Q Consensus 115 ~~~~-~----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 154 (490)
++.. . +.+..+|+.++.+|.+.|++++|+++|+++.+.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHH
Confidence 6443 2 23578999999999999999999999999876442
Q ss_pred -----------------------------------------------CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 011226 155 -----------------------------------------------GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187 (490)
Q Consensus 155 -----------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 187 (490)
+++..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 156778889999999999999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH
Q 011226 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY 267 (490)
Q Consensus 188 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 267 (490)
+. .+..++..++.++.+.|++++|..+++++.+. .+.+..+++.++..|.+.|++++|.++|+++.+... .+..+|
T Consensus 335 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 410 (597)
T 2xpi_A 335 DP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAW 410 (597)
T ss_dssp CT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred Cc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHH
Confidence 53 37788999999999999999999999999976 677899999999999999999999999999987543 468899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 268 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
+.++.+|.+.|++++|.++|+++.+.++ .+..++..++.+|.+.|++++|.++|+.+.+..+. +..+|+.++..|.+.
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHh
Confidence 9999999999999999999999988755 37789999999999999999999999999987665 889999999999999
Q ss_pred CChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH
Q 011226 348 GRLENAEELKERARRR----GADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 421 (490)
Q Consensus 348 ~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 421 (490)
|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|++.++++.+.+ ..+..+|..++.+|.
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-------TNDANVHTAIALVYL 561 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHH
Confidence 9999999999999875 66787 7899999999999999999999999999987 147899999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 422 QEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 422 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
+.|++++|.+.++++.+..| .+..++..+.++|.
T Consensus 562 ~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLAISP-NEIMASDLLKRALE 595 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 99999999999999999998 88999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=243.86 Aligned_cols=382 Identities=12% Similarity=0.033 Sum_probs=337.0
Q ss_pred HHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCH
Q 011226 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMT 139 (490)
Q Consensus 61 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~ 139 (490)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++.... .+.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3556778999999999999997775 34556677778888899999999999998888 556788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 140 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
++|.+.|+++.+..+ .+..+|..+..++.+.|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998652 345679999999999999999999999998864 44 45677788889999999999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC
Q 011226 219 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 298 (490)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 298 (490)
+.+. .+.+..+|..+...+.+.|++++|...|+++...++ .+...+..+...+...|++++|...+++.....+. +
T Consensus 161 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 161 AIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 9997 677789999999999999999999999999998654 45778899999999999999999999999887653 5
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011226 299 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 378 (490)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (490)
..++..+...+...|++++|...|+.+.+..+. +..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 678889999999999999999999999987665 67889999999999999999999999999863 4478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 011226 379 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 458 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (490)
+...|++++|++.++++.+.. +.+..++..+...+.+.|++++|...++++.+..| .+..+|..+...+...
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHc
Confidence 999999999999999999875 14588999999999999999999999999999988 8899999999998877
Q ss_pred CC
Q 011226 459 GR 460 (490)
Q Consensus 459 g~ 460 (490)
|+
T Consensus 387 ~~ 388 (388)
T 1w3b_A 387 QD 388 (388)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-28 Score=229.25 Aligned_cols=369 Identities=13% Similarity=0.094 Sum_probs=322.9
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP 174 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (490)
+...+.+.|++++|.+.++.+.. .+.+...+..+...+...|++++|...++....... .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 35567789999999999998877 444566778888889999999999999999888653 5778999999999999999
Q ss_pred CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 175 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 254 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 254 (490)
++|...|+++.+.. +.+..+|..+..++...|++++|...|+++.+. .|.+...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998853 224567899999999999999999999999997 566777888899999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 011226 255 LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI 334 (490)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (490)
+....+ .+..+|..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...+++.....+. +.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 988643 45788999999999999999999999999987654 5667888999999999999999999999887665 68
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 414 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~ 414 (490)
.++..+...+...|++++|...|+++.+.+.. +..+|..+...+.+.|++++|++.++++.+.. ..+..++.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~ 309 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-------PTHADSLN 309 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHH
Confidence 89999999999999999999999999986432 56789999999999999999999999999986 25688999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
.+...+.+.|++++|...++++.+..| .+..++..++.+|.+.|+..+++...-+...+.|+...
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 999999999999999999999999888 88999999999999999988777655555567776543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-31 Score=249.11 Aligned_cols=204 Identities=10% Similarity=0.064 Sum_probs=121.0
Q ss_pred HHHHHHHHHHCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCC---------HH
Q 011226 177 IPAIIQEMKASSIMPDS-YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL---------FE 246 (490)
Q Consensus 177 a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 246 (490)
+..+.+.+.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.| +.||..+|++||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555544333 245566666666666666666666666666 66666666666666665443 45
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011226 247 KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE 326 (490)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (490)
+|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 327 SGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 327 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666665543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-31 Score=249.34 Aligned_cols=207 Identities=15% Similarity=0.172 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC---------h
Q 011226 140 EKAEALLEKMKELNLGFSS-MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND---------I 209 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~ 209 (490)
..+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456667778777765544 46889999999999999999999999999999999999999999998765 6
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS 289 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (490)
+.|.++|++|...| +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 290 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
|.+.|+.||..||++||.+|++.|+.++|.+++++|.+.+..|+..+|+.++..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998864
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-26 Score=218.96 Aligned_cols=413 Identities=10% Similarity=-0.008 Sum_probs=328.1
Q ss_pred HHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHH
Q 011226 55 KWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCY 133 (490)
Q Consensus 55 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~ 133 (490)
...+......+.+.|++++|+..|+.+.+.+ |+...+..+..++.+.|++++|...++.+.+ .+.+..+|..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4566777888999999999999999998876 6899999999999999999999999999888 545677999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCC-----------------------------------cHH
Q 011226 134 CKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPE-----------------------------------KIP 178 (490)
Q Consensus 134 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------------------~a~ 178 (490)
...|++++|...|+++...+. ++......++..+....... ...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998764 44444444444333321111 111
Q ss_pred HHHHHHHHCCCC--------C-CHhhHHHHHHHHHH---cCChhHHHHHHHHHHH-----CCCC-------CCCHHHHHH
Q 011226 179 AIIQEMKASSIM--------P-DSYTYNVWMRALAA---VNDISGAERVIEEMKR-----DGRV-------AADWTTFSN 234 (490)
Q Consensus 179 ~~~~~~~~~~~~--------p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~ 234 (490)
.+...+...... | +...+......+.. .|++++|...|+++.+ .... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 111111111100 1 13344444444444 8999999999999988 3111 234567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 011226 235 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (490)
+...+...|++++|...|+++.+.... ...+..+..++...|++++|...++.+....+. +...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCC
Confidence 999999999999999999999886543 888899999999999999999999999886543 56678889999999999
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011226 315 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK 394 (490)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (490)
+++|...++.+.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..+++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999887665 677889999999999999999999999998633 3567888899999999999999999999
Q ss_pred HHhcCCCCCCCCcCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHH
Q 011226 395 AIDTGRGDGGKWVPS----SETIRTFMRHFEQ---EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLR 467 (490)
Q Consensus 395 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 467 (490)
+.+.... .++ ...+..+...+.. .|++++|...++++.+..+ .+..++..+..+|.+.|+..+++..
T Consensus 398 a~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 398 AIELENK-----LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHT-----SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhhhc-----cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9887511 011 3488999999999 9999999999999999988 8899999999999999997777655
Q ss_pred HHhhCCCCCCHHHH
Q 011226 468 RLKMEKVEVSEASK 481 (490)
Q Consensus 468 ~m~~~~~~p~~~~~ 481 (490)
.-+...+.|+....
T Consensus 472 ~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 472 FEESADLARTMEEK 485 (514)
T ss_dssp HHHHHHHCSSHHHH
T ss_pred HHHHHHhccccHHH
Confidence 55555667776543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-24 Score=206.63 Aligned_cols=317 Identities=10% Similarity=0.038 Sum_probs=224.6
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHH
Q 011226 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 200 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 200 (490)
.+...+..+...+.+.|++++|+.+|+++.+... .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 3445566666666666666666666666665432 345566666666666666666666666666543 22455666666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHccCCCCHH
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADW---TTFSNL------------ASIYVEAGLFEKAERALKELENRNAHRDLS 265 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 265 (490)
.++...|++++|...|+++.+. .+.+. ..+..+ ...+...|++++|...|+++.+... .+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChH
Confidence 6666667777777777666664 23333 344333 3346777777777777777766433 4566
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH-----
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM----- 340 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 340 (490)
.+..+..+|...|++++|...|+++....+. +..++..+...+...|++++|...|+.+....+. +...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 6777777777777777777777777665432 4566777777777777777777777777665443 44444443
Q ss_pred -------HHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC
Q 011226 341 -------IGAYAKEGRLENAEELKERARRRGADPN-----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP 408 (490)
Q Consensus 341 -------i~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p 408 (490)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|+..++++.+.. ..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------p~ 327 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-------PD 327 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cc
Confidence 78889999999999999999885 344 3467788889999999999999999999876 13
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 409 SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
+...|..+..+|...|++++|...++++.+..| .+..++..+..+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 372 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKA 372 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHH
Confidence 588999999999999999999999999999988 788888888844
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-24 Score=202.07 Aligned_cols=370 Identities=11% Similarity=-0.012 Sum_probs=248.6
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHH
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLL 130 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li 130 (490)
+.+...+..+...+.+.|++++|+.+|+.+.+.. +.+...+..+..++...|++++|...|+.+.. .+.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3455666666667777777777777777766553 34556666666666777777777777766666 333455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 131 NCYCKELMTEKAEALLEKMKELNLGFSS---MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
..|.+.|++++|.+.|+++.+.+. .+. ..+..++..+.. ..+..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 677777777777777776666442 122 344444333110 11223344567778
Q ss_pred ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
++++|...|+++.+. .+.+..++..++.+|.+.|++++|.+.|+++.+... .+..++..+..+|...|++++|...|
T Consensus 158 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 158 DYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888887775 566777777788888888888888888887776543 45677777777888888888888888
Q ss_pred HHHHHhCCCCCchhHHHH------------HHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChh
Q 011226 288 RSLRLAFPNTANISYLNM------------IQVLVNLKDLPGAEKCFKEWESGCATYD----IRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~ 351 (490)
+++....+. +...+..+ ...+...|++++|...|+.+.+..+. + ...+..+...+.+.|+++
T Consensus 235 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 235 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHH
Confidence 877765432 22333333 67788888888898888888775443 3 346777888888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHH-----------
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRH----------- 419 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~----------- 419 (490)
+|...++++.+.. +.+...|..+..+|...|++++|...++++++.. |+ ...+..+..+
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--------ENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------SSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHhhcccchh
Confidence 9999999888753 2367788888888899999999999999988876 44 5556555532
Q ss_pred -HHhcC-----ChHHHHHHHHH-HHHcCCC--CC-------HHhHHHHHHHHHhcCC
Q 011226 420 -FEQEK-----DVDGAEGFLEI-LKKAVDD--LG-------VEVFEPLIRTYAAAGR 460 (490)
Q Consensus 420 -~~~~g-----~~~~a~~~~~~-~~~~~~~--~~-------~~~~~~l~~~~~~~g~ 460 (490)
|...| +.+++.+.+++ .++..|. ++ ...+..+..+|...|+
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d 440 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 33344 56677888876 4544431 22 2367777888877777
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-23 Score=202.86 Aligned_cols=411 Identities=10% Similarity=0.026 Sum_probs=310.3
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNC 132 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~ 132 (490)
....+......+.+.|++++|++.|+.+.... +.+...+..+..++.+.|++++|.+.|+.+.. .+.+..++..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 45667778888999999999999999998876 45778888999999999999999999999888 55567889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC------CCCCCHhh-----------
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS------SIMPDSYT----------- 195 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~~~~----------- 195 (490)
+...|++++|.+.|+. .... |+. ....+..+...+....|...++.+... ...|+...
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHH-HhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999963 3322 221 122233333444445677777766442 11122111
Q ss_pred -------------------HHHHHHHH--------HHcCChhHHHHHHHHHHHCCCCCCCHH-------HHHHHHHHHHH
Q 011226 196 -------------------YNVWMRAL--------AAVNDISGAERVIEEMKRDGRVAADWT-------TFSNLASIYVE 241 (490)
Q Consensus 196 -------------------~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~ 241 (490)
...+...+ ...|++++|..+++++.+. .+.+.. ++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 11111111 1225789999999999986 444433 46677788889
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHH
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 321 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (490)
.|++++|...|+++.... |+...+..+...+...|++++|...++.+....+. +..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999998864 55788899999999999999999999999887654 567888999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011226 322 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG 401 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 401 (490)
++.+.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..++++.+....
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9999887665 678899999999999999999999999998643 35678888999999999999999999999887511
Q ss_pred CCCCCcCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhh
Q 011226 402 DGGKWVPSSETIRTFMRHFEQE----------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKM 471 (490)
Q Consensus 402 ~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~ 471 (490)
. .........+......+... |++++|...++++.+..| .+..++..+..+|...|+..+++...-+.
T Consensus 411 ~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 411 Q-EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp C-SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred c-hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 0 00112233355566777787 999999999999999998 88999999999999999976666444444
Q ss_pred CCCCCCHH
Q 011226 472 EKVEVSEA 479 (490)
Q Consensus 472 ~~~~p~~~ 479 (490)
..+.|+..
T Consensus 489 l~~~~~~~ 496 (537)
T 3fp2_A 489 AILARTMD 496 (537)
T ss_dssp HHHC--CH
T ss_pred HHhCCCcH
Confidence 44455543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=202.29 Aligned_cols=400 Identities=11% Similarity=-0.047 Sum_probs=314.8
Q ss_pred CCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHh
Q 011226 35 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFV 114 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 114 (490)
+...+...++...... |+...+..+...+.+.|++++|++.++.+.+.+ +.+...+..+..++...|++++|...|+
T Consensus 21 ~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555666666666655 578899999999999999999999999998876 4567789999999999999999999999
Q ss_pred hcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----------------------------------CC----
Q 011226 115 DLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKEL-----------------------------------NL---- 154 (490)
Q Consensus 115 ~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------------------------------~~---- 154 (490)
.+.. .+++......++..+........+.+.+..+... ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 9877 3344555555555544433333333333211110 00
Q ss_pred -----CCCcchHHHHHHHHHh---cCCCCcHHHHHHHHHH-----CCCC--------CCHhhHHHHHHHHHHcCChhHHH
Q 011226 155 -----GFSSMPFNSLMTLYAK---TGHPEKIPAIIQEMKA-----SSIM--------PDSYTYNVWMRALAAVNDISGAE 213 (490)
Q Consensus 155 -----~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------p~~~~~~~l~~~~~~~~~~~~a~ 213 (490)
+.+...+......+.. .|++++|..+|+++.+ .... .+..++..+..++...|++++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 0113333444444444 8999999999999987 3111 23456778889999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011226 214 RVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (490)
..++++.+.. +. ...+..+...+...|++++|...++.+..... .+...+..+...+...|++++|...++++...
T Consensus 258 ~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 333 (514)
T 2gw1_A 258 EDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333 (514)
T ss_dssp HHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999863 33 88899999999999999999999999987543 46778999999999999999999999999887
Q ss_pred CCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----
Q 011226 294 FPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN---- 368 (490)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~---- 368 (490)
.+. +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...++++.+.... ++
T Consensus 334 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 411 (514)
T 2gw1_A 334 DPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG 411 (514)
T ss_dssp CSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSC
T ss_pred Chh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHH
Confidence 654 5678888999999999999999999999887654 6788899999999999999999999999874222 11
Q ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011226 369 AKTWEIFSDYYLR---NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV 445 (490)
Q Consensus 369 ~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 445 (490)
...+..+...+.. .|++++|...++++.+.. ..+...+..+..++.+.|++++|...++++.+..| .+.
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~ 483 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-------PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-TME 483 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc-ccH
Confidence 3378888999999 999999999999999986 14578899999999999999999999999999998 666
Q ss_pred HhHHHH
Q 011226 446 EVFEPL 451 (490)
Q Consensus 446 ~~~~~l 451 (490)
..+..+
T Consensus 484 ~~~~~~ 489 (514)
T 2gw1_A 484 EKLQAI 489 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-21 Score=178.40 Aligned_cols=318 Identities=10% Similarity=0.017 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 204 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 204 (490)
.+..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 334444444444444444444444444321 223344444444444444444444444444432 113334444444444
Q ss_pred HcCChhHHHHHHHHHHHCCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 011226 205 AVNDISGAERVIEEMKRDGRVA---ADWTTFSNL------------ASIYVEAGLFEKAERALKELENRNAHRDLSAYQF 269 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (490)
..|++++|...|+++.+. .+ .+...+..+ ...+...|++++|.+.++++.+... .+...+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 455555555555544443 12 222222222 3555555666666666665555332 34455555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH------------
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT------------ 337 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 337 (490)
+..++...|++++|...++.+....+. +...+..+...+...|++++|...++...+..+. +...+
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 555566666666666666655554322 3445555555566666666666666665554333 22222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 338 NVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
..+...+...|++++|...++++.+.... +. ..+..+...+...|++++|+..++++.+.. ..+...+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 309 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-------PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cccHHHH
Confidence 23366788899999999999999885322 22 224456778889999999999999999876 1368889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 458 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (490)
..+...+...|++++|...|+++.+..| .+..++..+..+....
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 7888888888776543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-21 Score=186.97 Aligned_cols=392 Identities=10% Similarity=0.001 Sum_probs=300.9
Q ss_pred CCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHh
Q 011226 35 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFV 114 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 114 (490)
+...+...++...+.. +.++..+..+...+.+.|++++|++.++.+.+.+ +.+...+..+..++...|++++|...|+
T Consensus 40 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp CCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666777777766643 4678889999999999999999999999998876 4567888999999999999999999997
Q ss_pred hcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCcc-----------------------------
Q 011226 115 DLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELN------LGFSSM----------------------------- 159 (490)
Q Consensus 115 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~----------------------------- 159 (490)
.+.. .|+ .....+..+...+....|...++.+.... ..|+..
T Consensus 118 ~~~~-~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (537)
T 3fp2_A 118 VLSL-NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA 194 (537)
T ss_dssp HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHH
T ss_pred HHhc-CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHH
Confidence 4433 222 22333445556666778888888876531 111111
Q ss_pred -hHHHHHHHHHh--------cCCCCcHHHHHHHHHHCCCCCC--------HhhHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 011226 160 -PFNSLMTLYAK--------TGHPEKIPAIIQEMKASSIMPD--------SYTYNVWMRALAAVNDISGAERVIEEMKRD 222 (490)
Q Consensus 160 -~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 222 (490)
....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+...|++++|...++.+.+.
T Consensus 195 ~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 11122211111 247889999999988753 33 234667778889999999999999999995
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhH
Q 011226 223 GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY 302 (490)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 302 (490)
.|+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++....+. +...+
T Consensus 273 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 347 (537)
T 3fp2_A 273 ---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPY 347 (537)
T ss_dssp ---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHH
T ss_pred ---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 35588899999999999999999999999988654 46788999999999999999999999999987654 56788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHHHHHHHHH
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-----PNAKTWEIFSD 377 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~ 377 (490)
..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...|+++.+.... .....+.....
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 88999999999999999999999887655 6778999999999999999999999998864211 11122344456
Q ss_pred HHHhc----------CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 378 YYLRN----------GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 378 ~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
.+... |++++|+..++++.+... .+...+..+..++.+.|++++|...|+++.+..+ .+...
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~ 498 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-------RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR-TMDEK 498 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHH
Confidence 67777 999999999999999861 4578899999999999999999999999999987 44443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-20 Score=171.55 Aligned_cols=302 Identities=11% Similarity=-0.021 Sum_probs=226.7
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNC 132 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~ 132 (490)
+...+..+...+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|...|+.+.. .+.+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34567778888899999999999999998776 45677888899999999999999999999888 44467889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC----CcchHHHH------------HHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGF----SSMPFNSL------------MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTY 196 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 196 (490)
+...|++++|...|++..+.. | +...+..+ ...+...|++++|..+++++.+.. +.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 999999999999999998865 4 33344444 466777888888888888887653 3356677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHH--------
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ-------- 268 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------- 268 (490)
..+..++...|++++|...++.+.+. .+.+..++..+...+...|++++|...++...+... .+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHH
Confidence 77788888888888888888888876 566777888888888888888888888888776433 2233322
Q ss_pred ----HHHHHHHhcCChhHHHHHHHHHHHhCCCCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 269 ----FLITLYGQTGNLSEVYRIWRSLRLAFPNTAN---ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 269 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
.+...+.+.|++++|...++.+....+.... ..+..+...+...|++++|...++...+..+. +..++..+.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 313 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 2255577778888888888877765543111 12344667777788888888888877766443 667777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 011226 342 GAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
..+...|++++|...|+++.+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 7788888888888888877765
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-20 Score=170.76 Aligned_cols=291 Identities=11% Similarity=-0.032 Sum_probs=213.5
Q ss_pred CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH
Q 011226 156 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 235 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 235 (490)
.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+. .+.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 455566666666666677777777777666543 224445555666777777777777777777775 45566677777
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 011226 236 ASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 236 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (490)
...+...| ++++|.+.|++...... .+...|..+...+...|++++|...++++.+..+. +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 77777777 77777777777766432 34566777777777777777777777777766543 34556667777788888
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHH
Q 011226 315 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG--------ADPNAKTWEIFSDYYLRNGDMK 386 (490)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~ 386 (490)
+++|...++...+..+. +...+..+...+...|++++|...++++.+.. .......+..+...+...|+++
T Consensus 175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 88888888887776554 66778888888888888888888888887631 1233567888888888999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-HhcCC
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY-AAAGR 460 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 460 (490)
+|+..++++.+... .+...+..+..++...|++++|...++++.+..| .+..++..+..++ ...|+
T Consensus 254 ~A~~~~~~a~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLIP-------QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHST-------TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhCc-------cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCc
Confidence 99999999888761 3577888888899999999999999999988887 7888888888888 44454
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-19 Score=163.04 Aligned_cols=290 Identities=7% Similarity=-0.072 Sum_probs=245.2
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 011226 189 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ 268 (490)
Q Consensus 189 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (490)
.+.+...+..+...+...|++++|..+|+++.+. .+.+...+..++..+...|++++|...++++.+... .+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHH
Confidence 3456677888899999999999999999999987 677777888889999999999999999999988653 4677888
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 269 FLITLYGQTG-NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 269 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
.+...+...| ++++|...|+.+....+. +...+..+...+...|++++|...++.+.+..+. +...+..+...|...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 9999999999 999999999999876543 4667889999999999999999999999887665 567777899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC--CcCCHHHHHHHHHHHHhcCC
Q 011226 348 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK--WVPSSETIRTFMRHFEQEKD 425 (490)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 425 (490)
|++++|...++++.+... .+...+..+...+...|++++|...++++.+........ .......+..+..++...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999999999998643 367888999999999999999999999998863111000 12346789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHH
Q 011226 426 VDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLE 485 (490)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~ 485 (490)
+++|...++++.+..+ .+..++..+..+|...|+..+++...-+...+.|+........
T Consensus 252 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (330)
T 3hym_B 252 YAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310 (330)
T ss_dssp HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHH
Confidence 9999999999999998 7899999999999999998888877777778888765544333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-18 Score=162.48 Aligned_cols=371 Identities=11% Similarity=-0.007 Sum_probs=308.1
Q ss_pred CCCHHhHHHHHHHHhc----cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----hCCHHHHHHHHhhcCCCCCCH
Q 011226 52 RVFKWEVGDTLKKLRD----RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAK----VQGIDAAENYFVDLPETSKNH 123 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 123 (490)
.-++.....+...|.. .+++++|+..|+...+.| +...+..+...|.. .+++++|.++|+...+. .+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCH
Confidence 3456777777777777 899999999999998776 56677888888888 89999999999987663 367
Q ss_pred hHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCCHhh
Q 011226 124 LTYGSLLNCYCK----ELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK----TGHPEKIPAIIQEMKASSIMPDSYT 195 (490)
Q Consensus 124 ~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~ 195 (490)
..+..|...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 778888888888 889999999999998876 56778888888887 788999999999998875 6778
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHHH
Q 011226 196 YNVWMRALAA----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAY 267 (490)
Q Consensus 196 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 267 (490)
+..+...|.. .++.++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 8888888888 899999999999999875 45677788888887 889999999999988754 45677
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc-----CChhhHHHHHHHHHhcCCCCChhhHH
Q 011226 268 QFLITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL-----KDLPGAEKCFKEWESGCATYDIRVTN 338 (490)
Q Consensus 268 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (490)
..+...|.. .++.++|+..|+...+.+ +...+..+...|... ++.++|...|+...+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 778788887 899999999999987654 445667788888877 89999999999998865 456777
Q ss_pred HHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCHH
Q 011226 339 VMIGAYAKEG---RLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSE 411 (490)
Q Consensus 339 ~li~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~ 411 (490)
.+...|...| +.++|...|++..+.| +...+..+...|.. .+++++|+.+|++..+.+ +..
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---------~~~ 400 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---------LSA 400 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---------CHH
Confidence 8888888766 7899999999999863 67788888888888 899999999999999875 467
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHh
Q 011226 412 TIRTFMRHFEQ----EKDVDGAEGFLEILKKAVDD--LGVEVFEPLIRTYAA 457 (490)
Q Consensus 412 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 457 (490)
.+..+...|.. .+++++|...|+++.+.++. .+..+...|...+..
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 78888888988 89999999999999999852 255566555554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-20 Score=168.89 Aligned_cols=306 Identities=11% Similarity=-0.002 Sum_probs=214.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHH-HHHHHHHCCC---CCCHhhHHHHHHHHHHcCChhHH
Q 011226 137 LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPA-IIQEMKASSI---MPDSYTYNVWMRALAAVNDISGA 212 (490)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a 212 (490)
+.++.+...|+.+...+ |+ ++...|++++|.. .|++...... ..+...+..+...+...|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 44455555555555443 22 1223466777777 6665543211 11244566777788888888888
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
...|+++.+. .+.+..++..+..++...|++++|...|+++.+... .+..++..+..+|...|++++|...++.+..
T Consensus 84 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 84 VLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888876 566777788888888888888888888888777543 4667777788888888888888888888877
Q ss_pred hCCCCCchhHHH--------------HHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHH
Q 011226 293 AFPNTANISYLN--------------MIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELK 357 (490)
Q Consensus 293 ~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 357 (490)
..+......... .+..+...|++++|...++.+.+..+.. +..++..+...|...|++++|...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 654322221111 2333448899999999999998765543 5788899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 358 ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
+++.+... .+...+..+...+...|++++|+..++++++.. ..+...+..+..+|.+.|++++|...++++.
T Consensus 241 ~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 241 TAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-------PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99998632 357889999999999999999999999999986 1458899999999999999999999999999
Q ss_pred HcCCCCC-----------HHhHHHHHHHHHhcCCCcHHH
Q 011226 438 KAVDDLG-----------VEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 438 ~~~~~~~-----------~~~~~~l~~~~~~~g~~~~~~ 465 (490)
+..| .+ ..+|..+..+|...|+..++.
T Consensus 313 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 313 NMQR-KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHH-TC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HhCC-CCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 8776 34 789999999999999965544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-20 Score=171.95 Aligned_cols=272 Identities=12% Similarity=-0.019 Sum_probs=178.3
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 011226 160 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 160 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (490)
.+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...|+++.+. .+.+..++..+...+
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSF 142 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34444444444444444444444444432 123344444444555555555555555555544 334444555555555
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCCHHHHH---------------HHHHHHHhcCChhHHHHHHHHHHHhCCCC-CchhHH
Q 011226 240 VEAGLFEKAERALKELENRNAHRDLSAYQ---------------FLITLYGQTGNLSEVYRIWRSLRLAFPNT-ANISYL 303 (490)
Q Consensus 240 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 303 (490)
...|++++|.+.++++...... +...+. ..+..+...|++++|...++++....+.. +..++.
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 5555555555555555443221 111111 02333348889999999999988876542 466788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 383 (490)
.+...+...|++++|...++.+....+. +..++..+...+...|++++|...|+++.+... .+...+..+...|.+.|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCC
Confidence 8889999999999999999998877554 678889999999999999999999999988632 36778889999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCC---CC-CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 384 DMKLAVDCLEKAIDTGRGDG---GK-WVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~~~---~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
++++|...|+++.+...... .. ......+|..+..++...|++++|..++++.+
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999999988751100 00 00126889999999999999999999887543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-17 Score=162.28 Aligned_cols=398 Identities=9% Similarity=0.016 Sum_probs=288.8
Q ss_pred CCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHH
Q 011226 51 KRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL 130 (490)
Q Consensus 51 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li 130 (490)
.|.+...+..++. +.+.|++++|..+|+.+.+.. +.+...|..++..+.+.|+++.|.++|+++....|+...|...+
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4557778888887 477899999999999998875 45677888999999999999999999999999668888888777
Q ss_pred HHH-HHcCCHHHHHH----HHHHHHhC-CCCC-CcchHHHHHHHHHh---------cCCCCcHHHHHHHHHHCCCCCCHh
Q 011226 131 NCY-CKELMTEKAEA----LLEKMKEL-NLGF-SSMPFNSLMTLYAK---------TGHPEKIPAIIQEMKASSIMPDSY 194 (490)
Q Consensus 131 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~ 194 (490)
... ...|+++.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45677777665 77766542 4333 45677777776654 678899999999998731111123
Q ss_pred hHHHHHHHH-------------HHcCChhHHHHHHHHHH------HCC--CCCCC--------HHHHHHHHHHHHHc---
Q 011226 195 TYNVWMRAL-------------AAVNDISGAERVIEEMK------RDG--RVAAD--------WTTFSNLASIYVEA--- 242 (490)
Q Consensus 195 ~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~--~~~~~--------~~~~~~l~~~~~~~--- 242 (490)
.|....... ...+++..|..++.... +.. ..+|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 343322211 12345677777766532 211 02443 24555555433332
Q ss_pred -CCH----HHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHHhCCCCCchhHH
Q 011226 243 -GLF----EKAERALKELENRNAHRDLSAYQFLITLYGQ-------TGNLS-------EVYRIWRSLRLAFPNTANISYL 303 (490)
Q Consensus 243 -~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~ 303 (490)
++. +++..+|++.....+ .+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...+.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 477889999887543 467888888888775 69987 8999999987521222466788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHh
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYD-IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY-YLR 381 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 381 (490)
.++..+.+.|++++|..+|+.+.+..+. + ...|..++..+.+.|++++|..+|++..+... .+...|...... +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHH
Confidence 8889999999999999999999986443 3 35888999999999999999999999998522 233333322222 346
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C--CHHhHHHHHHHHHh
Q 011226 382 NGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-L--GVEVFEPLIRTYAA 457 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~ 457 (490)
.|+.++|..+|++.++.. | +...|..++..+.+.|+.++|..+|++++...+. | ....|..++.....
T Consensus 404 ~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999886 5 5889999999999999999999999999997651 1 24489888999889
Q ss_pred cCCC
Q 011226 458 AGRT 461 (490)
Q Consensus 458 ~g~~ 461 (490)
.|+.
T Consensus 476 ~G~~ 479 (530)
T 2ooe_A 476 IGDL 479 (530)
T ss_dssp SSCH
T ss_pred cCCH
Confidence 9983
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=166.32 Aligned_cols=267 Identities=10% Similarity=-0.056 Sum_probs=210.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHH
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 201 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 201 (490)
+...|..+...+.+.|++++|.+.|+++.+... .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445688888888899999999999998888653 467788888889999999999999999888764 335778888889
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CCHHHHHHH
Q 011226 202 ALAAVNDISGAERVIEEMKRDGRVAADWT----------TFSNLASIYVEAGLFEKAERALKELENRNAH-RDLSAYQFL 270 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l 270 (490)
++...|++++|...|+++.+.. +.+.. .+..+...+...|++++|...|+++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999988752 22222 2334578888899999999999999886543 167888899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 011226 271 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL 350 (490)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 350 (490)
...|...|++++|...|+++.+..+. +..++..+..+|...|++++|...|+.+.+..+. +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887653 5678889999999999999999999998887655 688899999999999999
Q ss_pred hHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011226 351 ENAEELKERARRRGAD-----------PNAKTWEIFSDYYLRNGDMKLAVDCLEK 394 (490)
Q Consensus 351 ~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (490)
++|...|+++.+.... .+...|..+..++...|+.+.+..+..+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999864211 1256788899999999999888877665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-16 Score=148.51 Aligned_cols=356 Identities=13% Similarity=0.049 Sum_probs=295.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----hCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHH----cCCHHHHHH
Q 011226 73 PALKLSENMEKRGMNKTVSDQAIHLDLVAK----VQGIDAAENYFVDLPETSKNHLTYGSLLNCYCK----ELMTEKAEA 144 (490)
Q Consensus 73 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~ 144 (490)
.+++.++...+.| +...+..+...|.. .++++.|..+|+...+. .+...+..|...|.. .+++++|.+
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3455566655554 56677777778877 79999999999987663 467788889999998 899999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCChhHHHHHH
Q 011226 145 LLEKMKELNLGFSSMPFNSLMTLYAK----TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGAERVI 216 (490)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~ 216 (490)
.|++..+.| +...+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|...|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999875 56777888888888 789999999999998876 66778888888887 78999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 011226 217 EEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYRIWR 288 (490)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 288 (490)
++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 175 ~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 175 SKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999864 57788889999988 899999999999998854 56678888888886 789999999999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----CChhHHHHHHHH
Q 011226 289 SLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-----GRLENAEELKER 359 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~ 359 (490)
+..+.+ +...+..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|...|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 987754 34566677777877 899999999999988764 556777888888887 899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh----cCChHHHHHH
Q 011226 360 ARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGF 432 (490)
Q Consensus 360 ~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 432 (490)
..+.| +...+..+...|...| ++++|+++|++..+.+ ++..+..+...|.. .+++++|...
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---------EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99864 5567777777787766 7899999999999875 56788889999988 8999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHh----cCCCcHHHH
Q 011226 433 LEILKKAVDDLGVEVFEPLIRTYAA----AGRTSPVML 466 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~ 466 (490)
|++..+.+ ++.++..|...|.. .++..+++.
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999876 47888999999988 677555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-19 Score=162.71 Aligned_cols=275 Identities=12% Similarity=-0.041 Sum_probs=223.2
Q ss_pred CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH
Q 011226 156 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 235 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 235 (490)
.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|+..|+++.+. .+.+..++..+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 139 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMAL 139 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 355668999999999999999999999998864 347788999999999999999999999999997 67788999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-CchhHHHH
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHR---------DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNM 305 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 305 (490)
...|...|++++|...|+++.+..... ....+..+...+...|++++|...++++....+.. +..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999998743210 12233445788999999999999999999876542 56788999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011226 306 IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 385 (490)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 385 (490)
...+...|++++|...++.+.+..+. +..+|..+..+|...|++++|...|+++.+... .+...+..+...|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887665 788999999999999999999999999998632 2578899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCC-----CcCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011226 386 KLAVDCLEKAIDTGRGDGGK-----WVPSSETIRTFMRHFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 435 (490)
++|...|+++++........ ...+..+|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999875110000 001357889999999999999988887765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-17 Score=154.45 Aligned_cols=270 Identities=11% Similarity=-0.065 Sum_probs=176.3
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC------
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKR--------GMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE------ 118 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------ 118 (490)
.....++.+...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566777888888999999999999887432 1122345788889999999999999888876643
Q ss_pred --CC-CCHhHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCcchHHHHHHH---HHhcCCCCcHHHHHHHHHHCCCC
Q 011226 119 --TS-KNHLTYGSLLNCYCKE--LMTEKAEALLEKMKELNLGFSSMPFNSLMTL---YAKTGHPEKIPAIIQEMKASSIM 190 (490)
Q Consensus 119 --~~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 190 (490)
.. ....++..+..++... +++++|++.|++..+..+ -+...+..+... +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 11 2245666665555554 578999999999988652 234444444444 345678889999999888754 2
Q ss_pred CCHhhHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHH
Q 011226 191 PDSYTYNVWMRALAA----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSA 266 (490)
Q Consensus 191 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 266 (490)
.+...+..+...+.. .|+.++|.+.+++.... .+.+..++..+...|...|++++|...+++..+..+ .+..+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHH
Confidence 245555555544444 46788999999999887 677888899999999999999999999999887543 35566
Q ss_pred HHHHHHHHHhcC-------------------ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 267 YQFLITLYGQTG-------------------NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 267 ~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
+..+..+|...+ ..+.|...++......+. +...+..+...+...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 666665554321 123344444444443322 233444445555555555555555555444
Q ss_pred c
Q 011226 328 G 328 (490)
Q Consensus 328 ~ 328 (490)
.
T Consensus 363 ~ 363 (472)
T 4g1t_A 363 K 363 (472)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-18 Score=154.77 Aligned_cols=272 Identities=11% Similarity=-0.050 Sum_probs=185.1
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 011226 160 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 160 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (490)
.+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+. .+.+..++..+...+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHH
Confidence 34444444555555555555555554432 124444555555555666666666666665554 344555555566666
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCCHHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHHhCCCCCchhHHH
Q 011226 240 VEAGLFEKAERALKELENRNAHRDLSAYQFL--------------IT-LYGQTGNLSEVYRIWRSLRLAFPNTANISYLN 304 (490)
Q Consensus 240 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (490)
...|++++|.+.++++...... +...+..+ .. .+...|++++|...++++.+..+. +...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 6666666666666665543221 11122221 22 367778889999999988877654 5677888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 305 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcc
Confidence 888999999999999999998877654 678889999999999999999999999988642 367788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCC-----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKW-----VPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+++|.+.++++.+......... ..+...+..+..++.+.|++++|..++++.++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999998761100000 00377889999999999999999999876544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-17 Score=151.09 Aligned_cols=261 Identities=11% Similarity=0.015 Sum_probs=222.0
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+...+..+...+...|++++|..+|+++.+. .+.+...+..+...+...|++++|...++++.+... .+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHH
Confidence 3445677888999999999999999999987 677888999999999999999999999999988643 4678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHH--------------HH-HHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM--------------IQ-VLVNLKDLPGAEKCFKEWESGCATYDIRV 336 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (490)
..+...|++++|...++++....+. +...+..+ .. .+...|++++|...++.+.+..+. +...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHH
Confidence 9999999999999999999886543 22333333 22 377789999999999999887665 7889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 416 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l 416 (490)
+..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..++++.+.. ..+...+..+
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l 246 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-------PGYVRVMYNM 246 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHH
Confidence 99999999999999999999999998643 367888999999999999999999999999986 1458889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-----------CHHhHHHHHHHHHhcCCCcHHH
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVDDL-----------GVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
..++...|++++|...++++.+..+.. +..+|..+..+|...|+..++.
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999988732 6889999999999999965554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-16 Score=151.41 Aligned_cols=378 Identities=13% Similarity=0.069 Sum_probs=275.0
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 011226 78 SENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGF 156 (490)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (490)
|+...+.. +-+...|..++. +.+.|+++.|..+|+.+.. .+.+...|..++..+.+.|++++|.++|++..... |
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 44444444 346778888888 4778999999999999988 55567789999999999999999999999999865 6
Q ss_pred CcchHHHHHHHH-HhcCCCCcHHH----HHHHHHHC-CCCC-CHhhHHHHHHHHHH---------cCChhHHHHHHHHHH
Q 011226 157 SSMPFNSLMTLY-AKTGHPEKIPA----IIQEMKAS-SIMP-DSYTYNVWMRALAA---------VNDISGAERVIEEMK 220 (490)
Q Consensus 157 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 220 (490)
+...|..++... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 777887777643 45788888776 67766543 5444 45667777776554 789999999999998
Q ss_pred HCCCCCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHH------cc---CCCC--------HHHHHHH
Q 011226 221 RDGRVAADWTTFSNLASIY-------------VEAGLFEKAERALKELEN------RN---AHRD--------LSAYQFL 270 (490)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~A~~~~~~~~~------~~---~~~~--------~~~~~~l 270 (490)
+.. .......|....... .+.++++.|..+++.+.. .. ++|+ ...|...
T Consensus 158 ~~P-~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 158 VNP-MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred hch-hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 842 222223443332211 123567777777766321 11 2333 2455555
Q ss_pred HHHHHhc----CCh----hHHHHHHHHHHHhCCCCCchhHHHHHHHHHh-------cCChh-------hHHHHHHHHHh-
Q 011226 271 ITLYGQT----GNL----SEVYRIWRSLRLAFPNTANISYLNMIQVLVN-------LKDLP-------GAEKCFKEWES- 327 (490)
Q Consensus 271 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~- 327 (490)
+...... ++. ..+..+|++.....+. +...|..++..+.. .|+++ +|..+++...+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433222 232 3777889998887543 56677777777765 79987 89999999986
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 011226 328 GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-A-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK 405 (490)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 405 (490)
..+ .+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+...
T Consensus 316 ~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~----- 387 (530)
T 2ooe_A 316 LLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR----- 387 (530)
T ss_dssp TCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-----
T ss_pred hCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-----
Confidence 333 36889999999999999999999999999985 454 2 4788888888899999999999999998751
Q ss_pred CcCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHHhhC
Q 011226 406 WVPSSETIRTFMRH-FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKME 472 (490)
Q Consensus 406 ~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~ 472 (490)
.+...+...+.. +...|++++|..+|+++++..| .++..|..++..+.+.|+ .+..+++.....
T Consensus 388 --~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 388 --TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp --CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred --CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 233444333322 3468999999999999999988 889999999999999999 455666665554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=146.87 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=98.1
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+..++..+...+...|+.++|++.++++...+..|.+...+..+...+...|++++|++.+++ +.+...+..++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 344444444455555555555555555544321133344444444555555555555555544 23444555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhH---HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISY---LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG 348 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 348 (490)
..+.+.|++++|.+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+..+. +...++.+..++...|
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcC
Confidence 55555555555555555555443 222111 11122223335555666666555554332 5555555555666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC
Q 011226 349 RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL-AVDCLEKAIDTG 399 (490)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 399 (490)
++++|...|+++.+.... +..++..++..+...|+.++ +.++++++.+..
T Consensus 215 ~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 666666666665554222 44455555555555555543 345555555554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-16 Score=151.18 Aligned_cols=362 Identities=12% Similarity=0.006 Sum_probs=254.9
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHhhcCC----------CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----
Q 011226 88 KTVSDQAIHLDLVAKVQGIDAAENYFVDLPE----------TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELN---- 153 (490)
Q Consensus 88 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---- 153 (490)
.....|+.+..++...|++++|++.|++..+ .+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456789999999999999999999987543 12345689999999999999999999998876521
Q ss_pred --CCC-CcchHHHHHHHHHh--cCCCCcHHHHHHHHHHCCCCCC-HhhHHHHHHH---HHHcCChhHHHHHHHHHHHCCC
Q 011226 154 --LGF-SSMPFNSLMTLYAK--TGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRA---LAAVNDISGAERVIEEMKRDGR 224 (490)
Q Consensus 154 --~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 224 (490)
..+ ...++..+..++.. .+++++|+..|++..+.. |+ +..+..+..+ +...++.++|++.+++..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-- 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-- 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--
Confidence 011 23455555555554 356899999999998854 43 4444444444 44567888999999999886
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch
Q 011226 225 VAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 300 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 300 (490)
.+.+..++..+...+.. .+++++|.+.+++...... .+...+..+...|...|++++|...+++..+..+. +..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHH
Confidence 56777777777666555 4678899999999887654 46778889999999999999999999999887654 445
Q ss_pred hHHHHHHHHHh-------------------cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 301 SYLNMIQVLVN-------------------LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 301 ~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
++..+..+|.. .+..+.|...++...+..+. +...+..+...|...|++++|...|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 55555555432 12356777888887776554 66788889999999999999999999999
Q ss_pred HcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 362 RRGADPNAK--TWEIFSD-YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 362 ~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+....|... .+..+.. .....|++++|+..|++.++.. |+..... +....+..++++.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--------~~~~~~~---------~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--------QKSREKE---------KMKDKLQKIAKMRLS 424 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--------CCCHHHH---------HHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------cccHHHH---------HHHHHHHHHHHHHHH
Confidence 864333221 1222222 3457899999999999999887 6543322 223455667788888
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCC
Q 011226 439 AVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 474 (490)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~ 474 (490)
.+| .++.+|..|..+|...|+..+|+...-++..+
T Consensus 425 ~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 425 KNG-ADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HCC--CTTHHHHHHHHHHHHHHCC------------
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888 88999999999999999977776544444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-17 Score=146.67 Aligned_cols=253 Identities=7% Similarity=0.035 Sum_probs=126.0
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHH
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTV--SDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTE 140 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 140 (490)
+.....|+++.|+..++...... |+. .....+..++...|+++.|+..++.. .+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHH
Confidence 33444566666666655543322 222 23344455666666666666555442 2344455555555666666666
Q ss_pred HHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 141 KAEALLEKMKELNLGFS-SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 141 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
+|++.++++...+..|+ ...+..+...+...|++++|++.+++ +.+...+..++.++.+.|++++|.+.|+.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666555443232 33334444555566666666665554 234455555555556666666666666665
Q ss_pred HHCCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC
Q 011226 220 KRDGRVAADWTT--FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT 297 (490)
Q Consensus 220 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (490)
.+. .+.+... ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++.....+.
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 553 1211111 0112222223355555555555555542 234455555555555555555555555555554332
Q ss_pred CchhHHHHHHHHHhcCChhh-HHHHHHHHHhcC
Q 011226 298 ANISYLNMIQVLVNLKDLPG-AEKCFKEWESGC 329 (490)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~ 329 (490)
+..++..++..+...|+.++ +.++++++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33444455555555555543 344555554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=153.80 Aligned_cols=283 Identities=13% Similarity=0.126 Sum_probs=96.3
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHH
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAII 181 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 181 (490)
+.|++++|.++++++.. +.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~~----~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55667777777777732 347777777777777777777777542 45566777777777777777777766
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 182 QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 182 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp --------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 555543 3345666667777777777777666653 244556777777777777777777777654
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 24666777777777777777777665 14566777777777777777774433321 12333344566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC------CHHHHHH
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP------SSETIRT 415 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p------~~~~~~~ 415 (490)
..|.+.|++++|..+++...... .-....|+.+..+|++- ++++..+.++.....-- +.| +...|..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~in-----i~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVN-----IPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSC-----HHHHHHHHHTTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHH
Confidence 66777777777777776666543 23445555555555443 23333333332222110 111 2344555
Q ss_pred HHHHHHhcCChHHHHH
Q 011226 416 FMRHFEQEKDVDGAEG 431 (490)
Q Consensus 416 l~~~~~~~g~~~~a~~ 431 (490)
+.-.|...++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 5555666666665544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-17 Score=145.63 Aligned_cols=353 Identities=10% Similarity=0.054 Sum_probs=165.5
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNC 132 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 132 (490)
+++..|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++...+..+++.+.+.++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 33468889999999999999999999653 577789999999999999999999888887755667889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA 212 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 212 (490)
|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+ ..|..++.++.+.|++++|
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHH
Confidence 999999999998884 277789999999999999999999999966 4689999999999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
.+.++++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|.+++|..+++....
T Consensus 168 Vea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 168 VDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 9999988 267899999999999999999966554422 2333455688899999999999999998875
Q ss_pred hCCCCCchhHHHHHHHHHhc--CChhhHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 293 AFPNTANISYLNMIQVLVNL--KDLPGAEKCFKEWESGCATY------DIRVTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
.. ......|+.+.-+|++- ++..+..+.|.. +.+++| +...|..+.-.|...++++.|.... .+.
T Consensus 236 le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm---~~h- 308 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH- 308 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS-
T ss_pred Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH---HhC-
Confidence 54 33455666666666653 333334443332 111211 5678899999999999999887753 332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH-------------HHHHHHHHhcCChHHHHH
Q 011226 365 ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI-------------RTFMRHFEQEKDVDGAEG 431 (490)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~-------------~~l~~~~~~~g~~~~a~~ 431 (490)
.|+...-..+.....+..+.+--.+...-.++.. |. .+ +..+..+.+.|+..-+..
T Consensus 309 -~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~--------p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~ 377 (449)
T 1b89_A 309 -PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--------PL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKP 377 (449)
T ss_dssp -TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC--------GG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHH
T ss_pred -ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC--------HH--HHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHH
Confidence 1222122222222233333332222111111111 11 12 233444566666666666
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 432 FLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
.++.+... .+..+-.+|-..|....+
T Consensus 378 yl~~v~~~---n~~~vnealn~l~ieeed 403 (449)
T 1b89_A 378 YLRSVQNH---NNKSVNESLNNLFITEED 403 (449)
T ss_dssp HHHHHHTT---CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHh---hHHHHHHHHHHHHHhhhh
Confidence 66555543 456666666666766655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-16 Score=136.99 Aligned_cols=239 Identities=13% Similarity=0.049 Sum_probs=186.0
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC--CC----HHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH--RD----LSA 266 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~ 266 (490)
...+..+...+...|++++|...|+++.+. . .+...+..+..++...|++++|...+++..+.... ++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 345667777888888888888888888876 4 66777888888888888888888888887664321 12 467
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 011226 267 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 346 (490)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (490)
+..+..++...|++++|...|++.....+ + ...+...|++++|...++.+....+. +...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHH
Confidence 77788888888888888888888877543 2 23456667888888888888776544 56778888888999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCCh
Q 011226 347 EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV 426 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 426 (490)
.|++++|...++++.+... .+...+..+...+...|++++|+..++++++... .+...+..+..++...|++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------NFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHhhH
Confidence 9999999999999888643 3677888888899999999999999999988861 3478888899999999999
Q ss_pred HHHHHHHHHHHHcC------CCCCHHhHHHHHH
Q 011226 427 DGAEGFLEILKKAV------DDLGVEVFEPLIR 453 (490)
Q Consensus 427 ~~a~~~~~~~~~~~------~~~~~~~~~~l~~ 453 (490)
++|...++++.+.. | .+..++..+..
T Consensus 224 ~~A~~~~~~a~~~~~~~~~~p-~~~~~~~~l~~ 255 (258)
T 3uq3_A 224 ASALETLDAARTKDAEVNNGS-SAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcCCC-chHHHHHHHHH
Confidence 99999999998877 5 56666655544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-15 Score=147.34 Aligned_cols=348 Identities=14% Similarity=0.122 Sum_probs=269.5
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGM--NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYG 127 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 127 (490)
....++..+...++.|...|.+.+|+++++++...+- .-+...-+.++....+. +.....+..+.+... + ..
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d---~~ 1053 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D---AP 1053 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c---HH
Confidence 3456788888899999999999999999999974431 12334455566666565 556666666665431 2 34
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
.+...+...|.+++|..+|++... .....+.++. ..+++++|.+++++.. +..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 477788889999999999998531 1222233332 6788999999988552 4678889999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
++++|+..|.+. .+...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 999999999553 467788889999999999999999998877754 33334445888999998888644432
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 288 RSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
. .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 1 235566777999999999999999999984 47889999999999999999999876 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+..++ -....
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler-aH~gm 1316 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----------VVHADELEELINYYQDRGYFEELITMLEAALGLER-AHMGM 1316 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh-hHhHH
Confidence 6789999999999999999988876542 24566777899999999999999999999998885 78888
Q ss_pred HHHHHHHHHhcCC
Q 011226 448 FEPLIRTYAAAGR 460 (490)
Q Consensus 448 ~~~l~~~~~~~g~ 460 (490)
|+-|...|++-.-
T Consensus 1317 ftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1317 FTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHHHHHhCCH
Confidence 9888888887655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.8e-19 Score=170.65 Aligned_cols=150 Identities=16% Similarity=0.209 Sum_probs=124.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHH
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKE---LNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 199 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 199 (490)
..+||+||.+|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCh-hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC------HHHHHHHHH
Q 011226 200 MRALAAVNDI-SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD------LSAYQFLIT 272 (490)
Q Consensus 200 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~ 272 (490)
|.++++.|+. +.|.++|++|.+.| +.||..+|+.++....+. .+++.++++ ..+..|+ ..+...|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG-~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG-LKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT-CCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC-CCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999984 78999999999999 999999999998766654 334444444 2344443 455566777
Q ss_pred HHHhcC
Q 011226 273 LYGQTG 278 (490)
Q Consensus 273 ~~~~~~ 278 (490)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-15 Score=132.22 Aligned_cols=255 Identities=11% Similarity=0.013 Sum_probs=197.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC--HHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLI 271 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 271 (490)
..+......+...|++++|+..|+++.+. .+.+...+..+..+|...|++++|...+++.......++ ...|..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34556677888899999999999999886 556666888888899999999999999998887332222 33478888
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
..+...|++++|...|+...+..+. +...+..+...+...|++++|...++...+..+. +...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998887654 5577888999999999999999999998877554 6677777773444556999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCCCCcCC------HHHHHHHHHHHHh
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVPS------SETIRTFMRHFEQ 422 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~ 422 (490)
+|...|+++.+.... +...+..+...+...|+ +++|...++++.+... -.|+ ...|..+...|..
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-----PGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-----GGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-----cccccchHHHHHHHHHHHHHHHH
Confidence 999999999986322 46677777888888888 8889999998887631 1132 3678889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 011226 423 EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 459 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (490)
.|++++|...++++.+..| .+..++..+.......+
T Consensus 234 ~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDP-TNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHhcCc-cHHHHHHHhhhhhcccc
Confidence 9999999999999999998 88888888776655443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-18 Score=164.68 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=99.5
Q ss_pred cchHHHHHHHHHhcCCCCcHHHHHHHHHH---CCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHH
Q 011226 158 SMPFNSLMTLYAKTGHPEKIPAIIQEMKA---SSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN 234 (490)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (490)
..|||+||++|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.| +.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHHH
Confidence 46788888888888888888888877753 4788888888888888888888888888888888888 8888888888
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc
Q 011226 235 LASIYVEAGLF-EKAERALKELENRNAHRDLSAYQFLITLYGQT 277 (490)
Q Consensus 235 l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (490)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 88888888874 67888888888888888888888887655554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-15 Score=134.72 Aligned_cols=251 Identities=11% Similarity=0.068 Sum_probs=212.2
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL-FEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
...|..+..++...|++++|+..++++++. .+.+..+|+.+..++...|+ +++|+..|+++..... -+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 355777788888999999999999999997 67788899999999999996 9999999999988654 4678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK-EGRL 350 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~ 350 (490)
.++...|++++|+..|+++.+..+. +...|..+..++...|++++|...++++.+..+. +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999987764 6778888999999999999999999999988776 88899999999999 6665
Q ss_pred hHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc
Q 011226 351 ENA-----EELKERARRRGADPNAKTWEIFSDYYLRNG--DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE 423 (490)
Q Consensus 351 ~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 423 (490)
++| +..+++.++.... +...|..+...+...| ++++|++.+.++ +.. ..+...+..++.+|.+.
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-------p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-------HSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-------CCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-------CCCHHHHHHHHHHHHHH
Confidence 888 5889888886433 5678888888888888 689999999888 443 14578889999999887
Q ss_pred C---------ChHHHHHHHHHH-HHcCCCCCHHhHHHHHHHHHhc
Q 011226 424 K---------DVDGAEGFLEIL-KKAVDDLGVEVFEPLIRTYAAA 458 (490)
Q Consensus 424 g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 458 (490)
| ..++|.++++++ .+.+| .....|..+...+...
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHH
Confidence 4 358999999999 88888 8888999888887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-15 Score=131.70 Aligned_cols=238 Identities=10% Similarity=-0.013 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC--C----chhH
Q 011226 229 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT--A----NISY 302 (490)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 302 (490)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++...+..+.. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577889999999999999999999999877 778899999999999999999999999988754321 2 4678
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN 382 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 382 (490)
..+...+...|++++|...++...+..+. ...+...|++++|...++.+..... .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 88999999999999999999999886543 2446677889999999999998532 2456778888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCc
Q 011226 383 GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS 462 (490)
Q Consensus 383 g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 462 (490)
|++++|+..++++.+... .+...+..+..++...|++++|...++++.+..| .+..+|..+..+|...|+..
T Consensus 153 ~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999861 4588899999999999999999999999999998 88999999999999999966
Q ss_pred HHHHHHHhhCCCC------CCHHHHHHHHH
Q 011226 463 PVMLRRLKMEKVE------VSEASKKLLEA 486 (490)
Q Consensus 463 ~~~~~~m~~~~~~------p~~~~~~~l~~ 486 (490)
+++....+...+. |+.........
T Consensus 225 ~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 225 SALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 6654444444444 66555444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-13 Score=136.57 Aligned_cols=375 Identities=9% Similarity=0.039 Sum_probs=269.5
Q ss_pred CCccHHHHHHHHHHhcCC--CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHH
Q 011226 35 SDVSVRQQLNQFLKSKKR--VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENY 112 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 112 (490)
.+..+..+++...-.+.. .+...-+.++....+. +..+..+..+.+.... ...+...+...|.+++|..+
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHH
Confidence 445555555555433221 1223333355555444 5566666655554221 33467788889999999999
Q ss_pred HhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC
Q 011226 113 FVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD 192 (490)
Q Consensus 113 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 192 (490)
|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.+.|.+. -|
T Consensus 1072 YkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD 1133 (1630)
T 1xi4_A 1072 FRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DD 1133 (1630)
T ss_pred HHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CC
Confidence 999753 2233333433 6789999999988652 3678999999999999999999999653 37
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+. + .++...|..+..
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 1203 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHH
Confidence 7788889999999999999999999888753 33333446899999999888644432 2 356667778999
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
.|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+..+|...|++..
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999885 37889999999999999999999876 266889988999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc--CChHHHH
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE--KDVDGAE 430 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~ 430 (490)
|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....|+-+...+.+. ++..++.
T Consensus 1269 A~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-------raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1269 AQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 98877653 2366677789999999999999999998888664 13355666666666654 3455555
Q ss_pred HHHHHHHHcCC----CCCHHhHHHHHHHHHhcCCCcHHHHHHHhhC
Q 011226 431 GFLEILKKAVD----DLGVEVFEPLIRTYAAAGRTSPVMLRRLKME 472 (490)
Q Consensus 431 ~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~ 472 (490)
+.|..-....+ -.+...|.-++..|.+.|++..|+...|...
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 55553322110 0357789999999999999888876665543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-15 Score=127.61 Aligned_cols=209 Identities=17% Similarity=0.076 Sum_probs=112.9
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 011226 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL 270 (490)
Q Consensus 191 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 270 (490)
++...+..+...+...|++++|...|++..+. .|.+...+..+...+.+.|++++|...|++..+..+ .+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 44555556666666666666666666666665 455566666666666666666666666666655432 234455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 011226 271 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL 350 (490)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 350 (490)
..++...+.. ... .....|++++|...++...+..+. +...+..+...+...|++
T Consensus 80 g~~~~~~~~~---------------~~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 80 SEAYVALYRQ---------------AED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHHHT---------------CSS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhh---------------hhh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCh
Confidence 5555544000 000 001116666666666666655444 455666666666666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHH
Q 011226 351 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 351 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 430 (490)
++|+..|++..+.+ .+...+..+...+...|++++|+..|+++++... .+...+..+...+...|++++|.
T Consensus 135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-------~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-------KDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHccCHHHHH
Confidence 66666666666654 4566666666666666666666666666666641 23556666666666666666666
Q ss_pred HHHHHH
Q 011226 431 GFLEIL 436 (490)
Q Consensus 431 ~~~~~~ 436 (490)
..+++.
T Consensus 206 ~~~~~~ 211 (217)
T 2pl2_A 206 RAAALE 211 (217)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 666654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-15 Score=125.76 Aligned_cols=199 Identities=13% Similarity=0.044 Sum_probs=133.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHH
Q 011226 155 GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN 234 (490)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (490)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+. .|.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 4677889999999999999999999999998864 336788888999999999999999999999997 6778889999
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHH
Q 011226 235 LASIYVEA-----------GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL 303 (490)
Q Consensus 235 l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (490)
+...+... |++++|...|++..+..+ -+...+..+..++...|++++|+..|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999888 666666666666665432 234555566666666666666666666665554 3455555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (490)
.+..++...|++++|...|+...+..+. +...+..+...+...|++++|...|++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5666666666666666666665555443 4455555555556666666666555543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-14 Score=137.62 Aligned_cols=344 Identities=15% Similarity=0.087 Sum_probs=237.8
Q ss_pred HHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH---HHHHHHHhhcCCCCCCHhHHHHHHHHHHHc
Q 011226 60 DTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGI---DAAENYFVDLPETSKNHLTYGSLLNCYCKE 136 (490)
Q Consensus 60 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~li~~~~~~ 136 (490)
.+...+.+.|++++|++.|+...+.| +...+..+...+...|+. ++|..+|+...+. +...+..|...+...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhC
Confidence 35667778999999999999998776 333455566677777888 8999999988874 666777777755555
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC---CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 137 L-----MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP---EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 137 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
+ ++++|++.|++..+.|. ...+..|...|...+.. .++.+.+......| +......+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 78999999999999764 34777888888776553 45666666666655 45566678888888885
Q ss_pred hhHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc----
Q 011226 209 ISGAER----VIEEMKRDGRVAADWTTFSNLASIYVEAG---LFEKAERALKELENRNAHRDLSAYQFLITLYGQT---- 277 (490)
Q Consensus 209 ~~~a~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 277 (490)
++++.. +++.... .++..+..|...|...| +.++|++.|++..+.|. ++...+..+...|...
T Consensus 157 ~~~~~~~a~~~~~~a~~-----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN-----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp GGGGHHHHHHHHHHHTT-----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSS
T ss_pred cccCHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCC
Confidence 554444 4444433 23337788999999999 99999999999998775 5666556777777655
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHHHHHHH-H--HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-----C
Q 011226 278 GNLSEVYRIWRSLRLAFPNTANISYLNMIQV-L--VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG-----R 349 (490)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~ 349 (490)
+++++|+..|+... .+ +...+..+... + ...++.++|...|++..+.| +...+..|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 79999999999986 32 44566666666 3 46899999999999998876 6677778888787 55 9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh---
Q 011226 350 LENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ--- 422 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 422 (490)
+++|...|++.. . -+...+..+...|.. ..++++|..+|++..+.|. + .....|...|..
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-------~--~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-------N--SADFAIAQLFSQGKG 369 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-------T--THHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-------H--HHHHHHHHHHHhCCC
Confidence 999999999887 3 366677777766665 3489999999999999872 3 344556666654
Q ss_pred -cCChHHHHHHHHHHHHcCC
Q 011226 423 -EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 423 -~g~~~~a~~~~~~~~~~~~ 441 (490)
..+.++|..+|+...+.|.
T Consensus 370 ~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 4589999999999999886
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-13 Score=121.82 Aligned_cols=225 Identities=13% Similarity=0.016 Sum_probs=176.9
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAY 267 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 267 (490)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45566677777888888888888888887742 44567777788888 888888888888887754 56677
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHH
Q 011226 268 QFLITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNV 339 (490)
Q Consensus 268 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (490)
..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777778888 888888888888877654 55667777778887 888888888888887765 5566777
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCHH
Q 011226 340 MIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSE 411 (490)
Q Consensus 340 li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~ 411 (490)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ | ..
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~-~~ 219 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--------N-GG 219 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--------C-HH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--------C-HH
Confidence 7777877 888899999998888763 55677777888888 889999999999988876 4 66
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 011226 412 TIRTFMRHFEQ----EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 412 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 441 (490)
.+..+...|.. .+++++|...|++..+.++
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77778888888 8899999999999988886
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-14 Score=122.16 Aligned_cols=208 Identities=14% Similarity=0.038 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 230 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
..+..+...+...|++++|.+.|+++.+... .+...+..+...|...|++++|.+.++++.+..+. +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 4445555555555566666655555554322 24455555555566666666666666655554332 344555566666
Q ss_pred HhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 388 (490)
...|++++|.+.++.+...+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665521122 445666667777777777777777777776532 2456677777777777888888
Q ss_pred HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 389 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
...++++.+.. ..+...+..+...+...|++++|.+.++++.+..| .+....
T Consensus 195 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 246 (252)
T 2ho1_A 195 RQYYDLFAQGG-------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP-GSLEYQ 246 (252)
T ss_dssp HHHHHHHHTTS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSHHHH
T ss_pred HHHHHHHHHhC-------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 88877777664 14466677777777777888888888887777766 444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.4e-15 Score=126.79 Aligned_cols=211 Identities=12% Similarity=0.041 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN 311 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (490)
|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+..+. +...+..+...+..
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHH
Confidence 34444444444555555555544444221 23444444444555555555555555554443321 33444455555555
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDC 391 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 391 (490)
.|++++|...++.+.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555544332 445556666666666666666666666665422 2455666666677777777777777
Q ss_pred HHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 392 LEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
++++.+.. ..+..++..+..++...|++++|...++++.+..| .+..++..+...
T Consensus 182 ~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~l 236 (243)
T 2q7f_A 182 FAAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP-DHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT-TCHHHHHHHTC-
T ss_pred HHHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc-chHHHHHHHHHH
Confidence 77776664 13466677777777777777777777777777766 555555554433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-14 Score=126.01 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC--HhhHHHHHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD--SYTYNVWMRA 202 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~ 202 (490)
.+......+...|++++|+..|++..+... .+...+..+...+...|++++|...+++..+.+..|+ ...|..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 444555666677777777777777776542 3444677777777777777777777777766321111 2236667777
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhH
Q 011226 203 LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE 282 (490)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (490)
+...|++++|...|++..+. .+.+..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777775 45566777777777777788888877777776542 2345555555523444457777
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC---hhhHHHHHHHHHhcC-CCCC------hhhHHHHHHHHHhcCChhH
Q 011226 283 VYRIWRSLRLAFPNTANISYLNMIQVLVNLKD---LPGAEKCFKEWESGC-ATYD------IRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~~ 352 (490)
|...|+++.+..+. +...+..+...+...|+ .++|...+++..+.. ..|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 87777777765543 34555566666666666 666777777765432 1112 2456667777778888888
Q ss_pred HHHHHHHHHHc
Q 011226 353 AEELKERARRR 363 (490)
Q Consensus 353 a~~~~~~~~~~ 363 (490)
|...|+++.+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888888775
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.67 E-value=8e-14 Score=118.61 Aligned_cols=210 Identities=11% Similarity=0.015 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 011226 229 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 308 (490)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (490)
...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++....+. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 44445555555555555555555555554322 23445555555555555555555555555554332 33445555556
Q ss_pred HHhc-CChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011226 309 LVNL-KDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 386 (490)
Q Consensus 309 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 386 (490)
+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666655521111 245556666666677777777777776666432 24556666666777777777
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
+|...++++.+.. ...+...+..+...+...|+.+.|..+++.+.+..| .+....
T Consensus 165 ~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~ 219 (225)
T 2vq2_A 165 DADYYFKKYQSRV------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP-YSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHH
Confidence 7777777776664 002355566666666677777777777777766665 444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.7e-14 Score=118.09 Aligned_cols=204 Identities=12% Similarity=-0.033 Sum_probs=153.5
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++..... .+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 4456677777888888888888888888776 566677778888888888888888888888776543 3566777788
Q ss_pred HHHHhc-CChhHHHHHHHHHHHhCCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 011226 272 TLYGQT-GNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 349 (490)
Q Consensus 272 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (490)
..+... |++++|...++.+.+....| +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCC
Confidence 888888 88888888888877621122 2456677777888888888888888887776554 56777888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 350 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88888888888775432366667777777788888888888888887765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-14 Score=121.52 Aligned_cols=201 Identities=11% Similarity=-0.012 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 34455555566666666666666666554 344555566666666666666666666666655432 244555556666
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 274 YGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
|...|++++|...++++...+..| +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666655411122 2334555566666666666666666666655433 45566666666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|...++.+.+... .+...+..+...+...|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777665422 345556666666667777777777777776665
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-14 Score=127.59 Aligned_cols=245 Identities=10% Similarity=0.043 Sum_probs=147.8
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 011226 161 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND-ISGAERVIEEMKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 161 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (490)
|+.+...+...|++++|+..++++++.. +-+...|+.+..++...|+ +++|+..|+++++. .+.+...|..+..++
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 4444444445555555555555555432 1134455555555555664 66666666666665 455566666666666
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh-cCChhhH
Q 011226 240 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN-LKDLPGA 318 (490)
Q Consensus 240 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a 318 (490)
...|++++|+..|+++..... -+...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 666666666666666665433 34556666666666666666666666666665543 44555666666666 4444555
Q ss_pred -----HHHHHHHHhcCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------
Q 011226 319 -----EKCFKEWESGCATYDIRVTNVMIGAYAKEG--RLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-------- 383 (490)
Q Consensus 319 -----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 383 (490)
...++......+. +...|+.+...+...| ++++|.+.+.++ +. -..+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 4666666666555 6667777777777766 577888888776 33 2234566777777777653
Q ss_pred -CHHHHHHHHHHH-HhcCCCCCCCCcCC-HHHHHHHHHHHH
Q 011226 384 -DMKLAVDCLEKA-IDTGRGDGGKWVPS-SETIRTFMRHFE 421 (490)
Q Consensus 384 -~~~~A~~~~~~~-~~~~~~~~~~~~p~-~~~~~~l~~~~~ 421 (490)
..++|+++++++ .+.. |. ...|..+...+.
T Consensus 332 ~~~~~A~~~~~~l~~~~D--------P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD--------TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC--------GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHH
Confidence 258899999998 6665 54 555665555554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-14 Score=123.40 Aligned_cols=200 Identities=17% Similarity=0.080 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 33444555555555566666655555554 344555555555556666666666666655554332 244555555555
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 011226 274 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 353 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (490)
+...|++++|...++++.+..+. +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666655554432 3444555556666666666666666665554433 455666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
...++++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 666666665422 245566666666666777777777777666665
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-15 Score=129.24 Aligned_cols=245 Identities=12% Similarity=-0.026 Sum_probs=118.7
Q ss_pred CCCCcHHHHHHHHHHCCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011226 172 GHPEKIPAIIQEMKASSIM---PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 248 (490)
|++++|+..|+++.+.... .+..++..+..++...|++++|...|+++.+. .+.+..++..+...|...|++++|
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHHH
Confidence 3444455555544443110 12334444555555555555555555555554 344455555555555555555555
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG 328 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (490)
...|++...... .+...+..+..+|...|++++|...++++.+..+ +.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 555555554322 2344555555555555555555555555554332 2222222333334445556666655554443
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 011226 329 CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD--P-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK 405 (490)
Q Consensus 329 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 405 (490)
.+. +...+ .++..+...++.++|...++...+.... | +...+..+...+...|++++|...|+++.+..
T Consensus 174 ~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 245 (275)
T 1xnf_A 174 SDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN------ 245 (275)
T ss_dssp SCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------
T ss_pred CCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------
Confidence 222 22222 2444455555555566655555432110 0 13455566666666677777777776666654
Q ss_pred CcCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011226 406 WVPSSETIRTFMRHFEQEKDVDGAEGFL 433 (490)
Q Consensus 406 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 433 (490)
|+. +.....++...|++++|.+.+
T Consensus 246 --p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CTT--CHHHHHHHHHHHHHHHC----
T ss_pred --chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 321 112233455556666665554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-12 Score=114.85 Aligned_cols=234 Identities=14% Similarity=0.023 Sum_probs=197.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCCCchh
Q 011226 226 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYRIWRSLRLAFPNTANIS 301 (490)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (490)
+-+..++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 346778888999999999999999999999883 356778889999999 999999999999998865 5678
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 011226 302 YLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWE 373 (490)
Q Consensus 302 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~ 373 (490)
+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8889999999 999999999999998874 67888899999999 999999999999999865 567777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCH
Q 011226 374 IFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVDDLGV 445 (490)
Q Consensus 374 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 445 (490)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.++ .
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~ 218 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---G 218 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---H
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---H
Confidence 88888887 899999999999999875 45778888999999 9999999999999999865 7
Q ss_pred HhHHHHHHHHHh----cCCCcHHHHHHHhhCCCCCCHHHHHH
Q 011226 446 EVFEPLIRTYAA----AGRTSPVMLRRLKMEKVEVSEASKKL 483 (490)
Q Consensus 446 ~~~~~l~~~~~~----~g~~~~~~~~~m~~~~~~p~~~~~~~ 483 (490)
..+..+...|.. .++..+++....+.....|+.....+
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788889999998 88876666555555555566554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-13 Score=121.98 Aligned_cols=244 Identities=13% Similarity=0.065 Sum_probs=193.6
Q ss_pred HHcCChhHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChh
Q 011226 204 AAVNDISGAERVIEEMKRDGRV--AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS 281 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (490)
...|++++|+..++++.+.... +.+..++..+...+...|++++|...|+++.+... .+...+..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 3457899999999999986311 23567788999999999999999999999988654 46889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 282 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
+|...|+++.+..+. +...+..+...+...|++++|...++.+.+..+. .......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999987653 5678889999999999999999999999886544 3333444455677799999999998888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 362 RRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-----SETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 362 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
... .++...+ .++..+...++.++|+..+.+..+.. |+ ...+..+...+...|++++|...|+++
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDN--------TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--------ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 753 3344444 46777888889999999999988765 32 578899999999999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 437 KKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
.+..| .+...+ ..++...|+..+++
T Consensus 242 l~~~p-~~~~~~---~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 242 VANNV-HNFVEH---RYALLELSLLGQDQ 266 (275)
T ss_dssp HTTCC-TTCHHH---HHHHHHHHHHHHC-
T ss_pred HhCCc-hhHHHH---HHHHHHHHHHHhhH
Confidence 99886 454333 44555556544433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-11 Score=121.08 Aligned_cols=429 Identities=10% Similarity=0.040 Sum_probs=276.7
Q ss_pred HHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC---HHHHHHHHhhc
Q 011226 40 RQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG---IDAAENYFVDL 116 (490)
Q Consensus 40 ~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 116 (490)
...++.-+. ..+.+...|..++..+.+.+.++.+..+|+.+...- +.....|...+..-.+.|+ ++.+.++|++.
T Consensus 52 i~~lE~~l~-~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 52 IGKLNDMIE-EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 333444443 345799999999999999999999999999998774 5567778888888888888 99999999999
Q ss_pred CCCC---CCHhHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-cchHHHHHHHHHh---------cCC
Q 011226 117 PETS---KNHLTYGSLLNCYCKELMT--------EKAEALLEKMKE-LNL-GFS-SMPFNSLMTLYAK---------TGH 173 (490)
Q Consensus 117 ~~~~---~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~~~ 173 (490)
.... |++..|..-+....+.++. +...++|+..+. .|. .++ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8844 8998998888776665554 334577877654 354 443 4677777765442 334
Q ss_pred CCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHH-------------cCChhHHHHHHHHHHHC--C--C-CC---------
Q 011226 174 PEKIPAIIQEMKASSIMPDSYTYNVWMRALAA-------------VNDISGAERVIEEMKRD--G--R-VA--------- 226 (490)
Q Consensus 174 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~--~-~~--------- 226 (490)
.+.+..+|+.........-..+|......--. ..+++.|...+.++... + . .+
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 56788888888753211112333222111111 11233344444443221 0 0 01
Q ss_pred --C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHH-HHHH
Q 011226 227 --A-----D---WTTFSNLASIYVEAG-------LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY-RIWR 288 (490)
Q Consensus 227 --~-----~---~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~ 288 (490)
| + ...|...+..--..+ ..+++..+|++..... +-....|...+..+...|+.++|. .+|+
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 0 133444444322222 1345667788877753 346777888888888888888886 8888
Q ss_pred HHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---------CC------------ChhhHHHHHHHHHhc
Q 011226 289 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA---------TY------------DIRVTNVMIGAYAKE 347 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~~~~~ 347 (490)
......+ .+...+...+......|+++.|..+|+.+..... .| ...+|...+....+.
T Consensus 369 rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 369 LGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 8876543 3444566677777888889999988888765310 12 234677888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCCh
Q 011226 348 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRN-GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV 426 (490)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 426 (490)
|+.+.|..+|.++.+.-..+....|...+..-.+. ++.+.|..+|+..++.. .-+...|...+......|+.
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-------p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-------ATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-------CCchHHHHHHHHHHHhCCCH
Confidence 88899999998888751112233443333333343 45888999999888874 23566777888888888899
Q ss_pred HHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCC--CcHHHHHHHhhCCCCCCHHHH
Q 011226 427 DGAEGFLEILKKAVDD--LGVEVFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSEASK 481 (490)
Q Consensus 427 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~ 481 (490)
+.|..+|++++...+. .....|..++..-.+.|+ .+..+..++... .|+....
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~ 577 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHH
Confidence 9999999988887652 245788888888888888 445566665544 3444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-14 Score=132.20 Aligned_cols=159 Identities=14% Similarity=0.055 Sum_probs=111.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-YD----IRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN----AK 370 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~ 370 (490)
++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+.... ++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 4556666777777777777777765432111 11 236777788888889999998888887752111 12 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCH
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD-----DLGV 445 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~ 445 (490)
++..+...+...|++++|...+++..+.....+ .......++..+...|...|++++|...++++.+... ....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 677788889999999999999999887631000 0001156788889999999999999999999877421 1346
Q ss_pred HhHHHHHHHHHhcCC
Q 011226 446 EVFEPLIRTYAAAGR 460 (490)
Q Consensus 446 ~~~~~l~~~~~~~g~ 460 (490)
.++..+...+...|+
T Consensus 348 ~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 348 TARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhH
Confidence 788889999988887
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-14 Score=133.25 Aligned_cols=305 Identities=13% Similarity=0.021 Sum_probs=197.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCCCcHHHHHHHHHHC----CCCC-C
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS----SMPFNSLMTLYAKTGHPEKIPAIIQEMKAS----SIMP-D 192 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~ 192 (490)
....+......+...|++++|...|++..+.+. .+ ..+|..+...+...|++++|...+++..+. +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344455556666666777777777776666532 11 245566666666777777777776665432 1111 1
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGL--------------------FEKA 248 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A 248 (490)
..++..+..++...|++++|...+++..+......+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 345666777777788888888777776653101111 3466777777888888 8888
Q ss_pred HHHHHHHHHcc--C--C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-CC----chhHHHHHHHHHhcCChhhH
Q 011226 249 ERALKELENRN--A--H-RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGA 318 (490)
Q Consensus 249 ~~~~~~~~~~~--~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a 318 (490)
...+++..... . . ....++..+...|...|++++|...+++....... ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88877664421 1 1 11346777778888888888888888877654221 11 12667788888889999999
Q ss_pred HHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011226 319 EKCFKEWESGCAT-YD----IRVTNVMIGAYAKEGRLENAEELKERARRRGA-DPN----AKTWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 319 ~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A 388 (490)
...++........ .+ ..++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9988886542211 01 45777888899999999999999998875311 112 45677788889999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHH
Q 011226 389 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDG 428 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 428 (490)
...+++..+..... +.......++..+...+...|+...
T Consensus 327 ~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 MHFAEKHLEISREV-GDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999987662100 0001125567777778877776643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-11 Score=116.74 Aligned_cols=390 Identities=10% Similarity=0.004 Sum_probs=272.2
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCC---HHHHHHHH
Q 011226 71 YYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELM---TEKAEALL 146 (490)
Q Consensus 71 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~---~~~a~~~~ 146 (490)
..+.+..|+..+..+ +-|...|..++..+.+.+.++.+..+|+.+.. .+.+...|...+..-.+.++ ++.+.++|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 455566677776666 46899999999999999999999999999988 66678889999999888899 99999999
Q ss_pred HHHHhCC-CCCCcchHHHHHHHHHhcCCC--------CcHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHH---------H
Q 011226 147 EKMKELN-LGFSSMPFNSLMTLYAKTGHP--------EKIPAIIQEMKA-SSI-MPD-SYTYNVWMRALA---------A 205 (490)
Q Consensus 147 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~p~-~~~~~~l~~~~~---------~ 205 (490)
++.+... ..|++..|...+....+.++. +.+.++|+.... .|. .|+ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998864 247888898888877666654 224477777654 366 554 467777766543 2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCCHHHHH---HHHHHH----------HHcCCHHHHHHHHHHHHHc--cCC---------
Q 011226 206 VNDISGAERVIEEMKRDGRVAADWTTFS---NLASIY----------VEAGLFEKAERALKELENR--NAH--------- 261 (490)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~----------~~~~~~~~A~~~~~~~~~~--~~~--------- 261 (490)
.++++.+..+|+.++... ...-..+|. .+...+ -...+++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 345788999999998632 111223332 222211 0112344455555554321 111
Q ss_pred ------C--C------HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHH-
Q 011226 262 ------R--D------LSAYQFLITLYGQTG-------NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE- 319 (490)
Q Consensus 262 ------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 319 (490)
| + ...|...+..--..+ ..+.+..+|++.....+. ....|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 134555554333222 123456789988877554 5677888888888899999996
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHH
Q 011226 320 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA---------DPN------------AKTWEIFSDY 378 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~ 378 (490)
.+|+......+. +...|...+...-+.|+++.|..+|+.+.+... .|+ ...|...+..
T Consensus 365 ~il~rAi~~~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCIPN-SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999876553 677788888889999999999999999986410 142 2468888888
Q ss_pred HHhcCCHHHHHHHHHHHHhc-CCCCCCCCcCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 379 YLRNGDMKLAVDCLEKAIDT-GRGDGGKWVPSSETIRTFMRHFEQE-KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
..+.|..+.|..+|.++++. +. +....|...+..-.+. ++.+.|..+|+..++.-+ .+...|..+++...
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~-------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKL-------VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGG-------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 88899999999999999987 31 3344554444444444 459999999999999866 78888899999888
Q ss_pred hcCC--CcHHHHHHHhhC
Q 011226 457 AAGR--TSPVMLRRLKME 472 (490)
Q Consensus 457 ~~g~--~~~~~~~~m~~~ 472 (490)
..|+ .+.++++.-...
T Consensus 516 ~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHTCHHHHHHHHHHHTTT
T ss_pred hCCCHHHHHHHHHHHHHh
Confidence 8888 566777765544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-14 Score=131.37 Aligned_cols=282 Identities=12% Similarity=0.057 Sum_probs=159.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-----chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHH
Q 011226 126 YGSLLNCYCKELMTEKAEALLEKMKELNLGFSS-----MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 200 (490)
Q Consensus 126 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 200 (490)
+..+...+...|++++|+..|++..+.+ |+. ..|..+...+...|++++|...+++..+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 3344455566666666666666665543 221 234445555555555555555555554320
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHH
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN-----AHRDLSAYQFLITLYG 275 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 275 (490)
...+..+....++..+...|...|++++|...+++..... ......++..+...|.
T Consensus 117 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 117 -------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 0000011122334444444455555555555444443310 0011234444555555
Q ss_pred hcCC-----------------hhHHHHHHHHHHHh----CCC-CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-C
Q 011226 276 QTGN-----------------LSEVYRIWRSLRLA----FPN-TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-Y 332 (490)
Q Consensus 276 ~~~~-----------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 332 (490)
..|+ +++|...+++.... +.. .....+..+...+...|++++|...+++..+.... .
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 55555555544321 100 01234556666777777777777777765442111 0
Q ss_pred C----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011226 333 D----IRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG 403 (490)
Q Consensus 333 ~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 403 (490)
+ ..++..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++.++.....
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~- 336 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL- 336 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-
Confidence 1 236677888888889999998888887753111 11 3567778888999999999999999888763100
Q ss_pred CCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 404 GKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 404 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
........++..+...|...|++++|...++++.+...
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 00001245778889999999999999999999988654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-12 Score=113.77 Aligned_cols=222 Identities=11% Similarity=0.026 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVE-------AGLF-------EKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
++|..+|+++... .+.+...|..++..+.. .|++ ++|..+|++....-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5777788888876 67777777777777653 4775 788888888876312234567888888888
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCch-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChhHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANI-SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA-KEGRLENA 353 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a 353 (490)
+.|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|+...+..+. +...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888774332 222 6777888888888888888888888876543 4455544333322 26899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHHHHhcCChHHHHH
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEG 431 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 431 (490)
..+|++..+... -+...|..++..+.+.|++++|..+|++++.... +.| ....|..++..+.+.|+.+.|..
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-----l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-----LPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-----SCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998887532 2667788888888888999999999999988631 124 46788888888888999999999
Q ss_pred HHHHHHHcCC
Q 011226 432 FLEILKKAVD 441 (490)
Q Consensus 432 ~~~~~~~~~~ 441 (490)
+++++.+..|
T Consensus 263 ~~~~a~~~~p 272 (308)
T 2ond_A 263 VEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcc
Confidence 9999988876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-13 Score=127.08 Aligned_cols=369 Identities=12% Similarity=0.040 Sum_probs=238.5
Q ss_pred CCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCc---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhC-----CH
Q 011226 35 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLY---YPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQ-----GI 106 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 106 (490)
+...+...+....+.|.. ..+..+...|...|+. ++|++.|+...+. +...+..+...+...| ++
T Consensus 18 ~~~~A~~~~~~aa~~g~~---~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELGYS---EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHTCC---TGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCH
Confidence 344455555555555543 3333444445556777 8999999998754 4445566666454444 78
Q ss_pred HHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHH
Q 011226 107 DAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEK---AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQE 183 (490)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 183 (490)
++|..+|+..... -+...+..|...|...+..+. +.+.+......| +...+..|...|...+.++++......
T Consensus 91 ~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 91 HEAESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 8999999887762 233377778888877665444 455555555544 456778888888888877776666444
Q ss_pred HHHCCCCCCHhhHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 011226 184 MKASSIMPDSYTYNVWMRALAAVN---DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA----GLFEKAERALKELE 256 (490)
Q Consensus 184 ~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~ 256 (490)
+.+.-...++..+..|...|...| +.++|+..|++..+.| +++...+..+...|... +++++|.+.|++..
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 433322334457888999999999 9999999999999985 66666666778877665 79999999999987
Q ss_pred HccCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC-----ChhhHHHHHHHHHhc
Q 011226 257 NRNAHRDLSAYQFLITL-Y--GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK-----DLPGAEKCFKEWESG 328 (490)
Q Consensus 257 ~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~ 328 (490)
.| +...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| +.++|...|+... .
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 33 45566667666 4 56899999999999988766 4566777777776 55 9999999999877 3
Q ss_pred CCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 011226 329 CATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGR 400 (490)
Q Consensus 329 ~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 400 (490)
-+...+..|...|.. ..++++|...|+...+.|. ......+...|.. ..+..+|..+|+...+.|.
T Consensus 316 ---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 ---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp ---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred ---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 366777788877776 3489999999999998763 3445555556653 4589999999999999982
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 401 GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 401 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
++.......+......++..+|..+.++..+
T Consensus 390 -------~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 -------PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp -------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3333332333333344466677777776655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=133.09 Aligned_cols=281 Identities=14% Similarity=0.024 Sum_probs=156.3
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhhCCHHHHHHHHhhcCCC-------CCC
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTV----SDQAIHLDLVAKVQGIDAAENYFVDLPET-------SKN 122 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~ 122 (490)
....+..+...+...|++++|+..|+.+.+.+. .+. ..+..+..++...|++++|...+++.... +..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 344455566677888888888888888877642 222 35667777777888888888877766541 112
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCcchHHHHHHHHHhcCC----------CCcHHHHHHHHHHC
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELN-----LGFSSMPFNSLMTLYAKTGH----------PEKIPAIIQEMKAS 187 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~ 187 (490)
..++..+...|...|++++|...+++..+.. .+....++..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------- 198 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------- 198 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------
Confidence 3456666777777777777777777665431 00112234444444444444 0000000
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-C
Q 011226 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-R 262 (490)
Q Consensus 188 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 262 (490)
+++|...+++..+. +..+....++..+...|...|++++|...+++..+.... +
T Consensus 199 ---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 199 ---------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 44444444443221 101112234555555566666666666665555432110 1
Q ss_pred C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-----CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---
Q 011226 263 D----LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-----ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA--- 330 (490)
Q Consensus 263 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 330 (490)
+ ...+..+..+|...|++++|...+++........ ...++..+...+...|++++|...+++......
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 1245556666666666666666666554332110 123455666666677777777776666543211
Q ss_pred --CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 331 --TYDIRVTNVMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 331 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
.....++..+...|...|++++|...+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111345666777777888888888888877764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-12 Score=106.89 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 011226 263 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 342 (490)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (490)
+...|..+...|...|++++|++.|++..+..+. +...+..+..++...|++++|...+.......+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 3445555555555566666666666655554432 3445555555566666666666666655554443 4455555556
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh
Q 011226 343 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 422 (490)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 422 (490)
.+...++++.|...+.+..+... .+...+..+...+.+.|++++|++.|++.++... .+...|..+..+|.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-------GFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-------hhhhHHHHHHHHHHH
Confidence 66666666666666666665422 2445556666666666666666666666666641 235666666666666
Q ss_pred cCChHHHHHHHHHHHHcCC
Q 011226 423 EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~~~~~ 441 (490)
.|++++|...|+++++..|
T Consensus 154 ~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHhCCc
Confidence 7777777777776666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.6e-13 Score=121.91 Aligned_cols=299 Identities=11% Similarity=0.063 Sum_probs=204.0
Q ss_pred HHHcCCHHHHHHHHHHHHhC--CC--CCCcchHHHHHHHH--HhcCCCCcHH-----------HHHHHHHHCCCCCCH--
Q 011226 133 YCKELMTEKAEALLEKMKEL--NL--GFSSMPFNSLMTLY--AKTGHPEKIP-----------AIIQEMKASSIMPDS-- 193 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~~~~~~~~p~~-- 193 (490)
+.+.+++++|..+++++.+. .+ .++...|-.++..- ...++.+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 35678888888888777553 11 12233333333221 1122223333 666666442111110
Q ss_pred --hhHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-C----
Q 011226 194 --YTYNVWMRALAAVNDISGAERVIEEMKRDGR---VAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAH-R---- 262 (490)
Q Consensus 194 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~---- 262 (490)
..+......+...|++++|...+++..+.-. .++ ...++..+...|...|++++|...+++..+.... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1122255677889999999999999987411 112 3467888999999999999999999987653211 1
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC-----chhHHHHHHHHHhcCChhhHHHHHHHHHh-----cCCC
Q 011226 263 -DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA-----NISYLNMIQVLVNLKDLPGAEKCFKEWES-----GCAT 331 (490)
Q Consensus 263 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~ 331 (490)
...+++.+..+|...|++++|...+++..+.....+ ..++..+...|...|++++|...+++..+ ....
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 135778888999999999999999998875422111 13677889999999999999999999766 3313
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCC
Q 011226 332 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGA-DPN---AKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGG 404 (490)
Q Consensus 332 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~ 404 (490)
....++..+...|...|++++|...+++..+... ..+ ...+..+...+...|+ +++|+.++++....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~------ 335 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY------ 335 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH------
Confidence 3466788899999999999999999999875310 012 2235667777888888 77788887765211
Q ss_pred CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 405 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 405 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
......+..+...|...|++++|...++++.+.
T Consensus 336 --~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 336 --ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 133567788999999999999999999998874
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=125.65 Aligned_cols=272 Identities=13% Similarity=0.064 Sum_probs=181.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----cchHHHHHHHHHhcCCCCcHHHHHHHHHHC----CCCC-CHhh
Q 011226 126 YGSLLNCYCKELMTEKAEALLEKMKELNLGFS-----SMPFNSLMTLYAKTGHPEKIPAIIQEMKAS----SIMP-DSYT 195 (490)
Q Consensus 126 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~ 195 (490)
+......+...|++++|...|++..+.. |+ ...+..+...+...|++++|.+.+++..+. +..| ....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3344555666777777777777766653 22 245566666777777777777777665432 1111 2345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGL--------------------FEKAERA 251 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 251 (490)
+..+..++...|++++|...+++..+.....++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 666777788888888888888776653101112 3366777788888888 8888888
Q ss_pred HHHHHHc----cCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-CC----chhHHHHHHHHHhcCChhhHHHH
Q 011226 252 LKELENR----NAH-RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGAEKC 321 (490)
Q Consensus 252 ~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~ 321 (490)
+++.... +.. .....+..+...+...|++++|...+++....... ++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776432 111 11346677778888889999998888877643211 11 22667778888889999999988
Q ss_pred HHHHHhcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHH
Q 011226 322 FKEWESGCAT-YD----IRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDC 391 (490)
Q Consensus 322 ~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~ 391 (490)
++........ .+ ..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8886542211 01 456777888899999999999999888753110 11 34667788889999999999999
Q ss_pred HHHHHhcC
Q 011226 392 LEKAIDTG 399 (490)
Q Consensus 392 ~~~~~~~~ 399 (490)
++++.+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-12 Score=105.07 Aligned_cols=165 Identities=16% Similarity=0.094 Sum_probs=75.9
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
+..|..+..++...|++++|+..|++..+. .|.+..++..+..+|.+.|++++|...++....... .+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 344455555555555555555555555554 344444555555555555555555555555444322 23334444444
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
.+...++++.|...+.......+. +...+..+...+...|++++|.+.|++..+..+. +..+|..+..+|...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 444445555555544444443322 2333344444444444444444444444443332 33444444444444444444
Q ss_pred HHHHHHHHHH
Q 011226 353 AEELKERARR 362 (490)
Q Consensus 353 a~~~~~~~~~ 362 (490)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-13 Score=123.25 Aligned_cols=280 Identities=14% Similarity=0.062 Sum_probs=200.5
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCCHHH
Q 011226 160 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD----SYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADWTT 231 (490)
Q Consensus 160 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 231 (490)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++..+. +..+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445566788899999999999999886322 3 356778888999999999999999887653 211223556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHhcCC--------------------hhHHHHH
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGN--------------------LSEVYRI 286 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 286 (490)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 788889999999999999999887653211 22 3467778888889999 8899888
Q ss_pred HHHHHHh----CCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCChhHHHHH
Q 011226 287 WRSLRLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-----YDIRVTNVMIGAYAKEGRLENAEEL 356 (490)
Q Consensus 287 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~ 356 (490)
+++.... +..+ ....+..+...+...|++++|...++...+.... ....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876542 1111 1235677788888999999999999887543111 1123677888889999999999999
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHH
Q 011226 357 KERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEG 431 (490)
Q Consensus 357 ~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 431 (490)
+++..+.... ++ ..++..+...+...|++++|...++++.+..... ........++..+...+...|++++|..
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9888753111 12 4466777888899999999999999887653100 0000114577788889999999999999
Q ss_pred HHHHHHHcCC
Q 011226 432 FLEILKKAVD 441 (490)
Q Consensus 432 ~~~~~~~~~~ 441 (490)
.++++.+...
T Consensus 325 ~~~~a~~~~~ 334 (338)
T 3ro2_A 325 FAEKHLEISR 334 (338)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 9999887643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=8e-12 Score=111.81 Aligned_cols=218 Identities=13% Similarity=0.066 Sum_probs=143.6
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHH-------HcCCh-------hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALA-------AVNDI-------SGAERVIEEMKRDGRVAADWTTFSNLASIYVE 241 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (490)
+|..+|++..+.. +-++..|..++..+. ..|++ ++|..+|++..+.- .+.+...|..++..+.+
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHh
Confidence 4455555555432 224445555544443 34664 77777777777731 34455677777777777
Q ss_pred cCCHHHHHHHHHHHHHccCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHH-HhcCChhhH
Q 011226 242 AGLFEKAERALKELENRNAHRD-LS-AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL-VNLKDLPGA 318 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a 318 (490)
.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+..+. +...|....... ...|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 77788888777777763 232 32 6777777777778888888888777765432 333333322222 126888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011226 319 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG-ADP--NAKTWEIFSDYYLRNGDMKLAVDCLEKA 395 (490)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 395 (490)
..+|+...+..+. +...|..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887766554 67777888888888888888888888888752 343 3456777777777888888888888888
Q ss_pred HhcC
Q 011226 396 IDTG 399 (490)
Q Consensus 396 ~~~~ 399 (490)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8776
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.7e-12 Score=115.20 Aligned_cols=311 Identities=12% Similarity=0.034 Sum_probs=212.5
Q ss_pred CCCHhHHHHHHHHH--HHcCCHHHHHHHHHHHHhCC--CC--CCcchHHHHHHH--HHhcCCCCcHH---------HHHH
Q 011226 120 SKNHLTYGSLLNCY--CKELMTEKAEALLEKMKELN--LG--FSSMPFNSLMTL--YAKTGHPEKIP---------AIIQ 182 (490)
Q Consensus 120 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 182 (490)
.|+..+-+.|-..| ...+++++|.++++++.+.. ++ ++...|-.++.. ....+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555555565555 77888999988888875531 11 223333444432 11223444444 7777
Q ss_pred HHHHCCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 183 EMKASSIMPDS----YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA----DWTTFSNLASIYVEAGLFEKAERALKE 254 (490)
Q Consensus 183 ~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 254 (490)
.+.....+.+. ..+......+...|++++|...|++..+.....+ ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 66543211111 1223344567789999999999999987521112 245678899999999999999999998
Q ss_pred HHHccCC-C-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-C----CchhHHHHHHHHHhcCChhhHHHHHH
Q 011226 255 LENRNAH-R-----DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-T----ANISYLNMIQVLVNLKDLPGAEKCFK 323 (490)
Q Consensus 255 ~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (490)
..+.... + ...+++.+..+|...|++++|.+.+++..+.... + ...++..+...|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7653211 1 2456778889999999999999999987653211 1 12367778899999999999999999
Q ss_pred HHHh-----cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CC-HHHHHHHHHHHHhcCC---HHHHHHH
Q 011226 324 EWES-----GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD---PN-AKTWEIFSDYYLRNGD---MKLAVDC 391 (490)
Q Consensus 324 ~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~---~~~A~~~ 391 (490)
+... ..+. ...++..+...+.+.|++++|...+++..+.... |. ...+..+...+...++ +.+|+..
T Consensus 247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9876 4444 3678888999999999999999999999874221 22 2345555556677777 7788888
Q ss_pred HHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 392 LEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
+++. +. .......+..+...|...|++++|...|+++.+.
T Consensus 326 ~~~~---~~-----~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEKK---NL-----HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHT---TC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC---CC-----hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7762 21 1123556778899999999999999999998763
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.4e-13 Score=122.32 Aligned_cols=227 Identities=8% Similarity=-0.047 Sum_probs=110.5
Q ss_pred HhccCCchHHHHHHHHHHhC--CCCCCh--hhHHHHHHHH--HhhCCHHHHH-----------HHHhhcCCCCCCHhH--
Q 011226 65 LRDRKLYYPALKLSENMEKR--GMNKTV--SDQAIHLDLV--AKVQGIDAAE-----------NYFVDLPETSKNHLT-- 125 (490)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~~~--~~~g~~~~a~-----------~~~~~~~~~~~~~~~-- 125 (490)
+.+.+++++|..+++++.+. ..+.+. ..|..++..- .-.+.++.+. +.++.+...+.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999998443 222233 2333333221 1223333333 444444321111111
Q ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC-C----
Q 011226 126 ----YGSLLNCYCKELMTEKAEALLEKMKEL----NLGF-SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIM-P---- 191 (490)
Q Consensus 126 ----~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p---- 191 (490)
+......+...|++++|.+.|++..+. +-.+ ...+|..+...|...|++++|...+.+..+.... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112444556677777777777776653 1001 2245555666666666666666666655432100 0
Q ss_pred -CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----cC-C
Q 011226 192 -DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA----DWTTFSNLASIYVEAGLFEKAERALKELENR----NA-H 261 (490)
Q Consensus 192 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~ 261 (490)
...+++.+..+|...|++++|...+++..+...... ...++..+..+|...|++++|.+.+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 123445555556666666666666555544210001 1124455555555555555555555555441 11 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
....++..+..+|...|++++|...+++..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 123344455555555555555555555443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.4e-13 Score=125.10 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF-EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
++++...++..... .+.+...+..+...+...|++ ++|.+.|++..+... .+...|..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555555555543 445666666666666667777 777777766665432 24566666666777777777777777
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHhc---------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CCh
Q 011226 288 RSLRLAFPNTANISYLNMIQVLVNL---------KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE--------GRL 350 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~ 350 (490)
++..+.. |+...+..+...+... |++++|...+++..+..+. +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 7666543 3345566666666666 7777777777777766554 566777777777777 778
Q ss_pred hHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHH
Q 011226 351 ENAEELKERARRRGAD--PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDG 428 (490)
Q Consensus 351 ~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 428 (490)
++|...|++..+.... -+...|..+...|...|++++|++.|+++.+... .+...+..+..++...|++++
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-------AWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888775320 2667777888888888888888888888887761 336677777778888888887
Q ss_pred HHHHHHH
Q 011226 429 AEGFLEI 435 (490)
Q Consensus 429 a~~~~~~ 435 (490)
|.+.+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 7765543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=123.53 Aligned_cols=208 Identities=12% Similarity=0.052 Sum_probs=181.7
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 011226 244 LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL-SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF 322 (490)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (490)
.++++...++...... +.+...+..+..++...|++ ++|+..|++..+..+. +...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567777777765532 24678899999999999999 9999999999987654 5678899999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCH
Q 011226 323 KEWESGCATYDIRVTNVMIGAYAKE---------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRN--------GDM 385 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~ 385 (490)
+...+.. |+...+..+...|... |++++|...|++..+.... +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999875 4568889999999999 9999999999999986433 678888999999888 999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCC
Q 011226 386 KLAVDCLEKAIDTGRGDGGKWVP----SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (490)
++|+..|+++++.. | +...|..+..+|...|++++|...|+++.+..| .+..++..+..++...|+.
T Consensus 238 ~~A~~~~~~al~~~--------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 238 QQALSAYAQAEKVD--------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HHHHHHHHHHHHHC--------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Confidence 99999999999986 6 689999999999999999999999999999998 8899999999999998886
Q ss_pred cHHH
Q 011226 462 SPVM 465 (490)
Q Consensus 462 ~~~~ 465 (490)
.+++
T Consensus 309 ~eAi 312 (474)
T 4abn_A 309 TSLL 312 (474)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=123.51 Aligned_cols=241 Identities=14% Similarity=0.104 Sum_probs=145.2
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------c
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRD-------GRVAADWTTFSNLASIYVEAGLFEKAERALKELENR------N 259 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 259 (490)
..++..+...+...|++++|..+++++.+. . .+....++..+...|...|++++|...+++.... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345666666777777777777777776652 1 3344555667777777777777777777776543 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC------CCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhc---
Q 011226 260 A-HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF------PNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESG--- 328 (490)
Q Consensus 260 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 328 (490)
. .....++..+...|...|++++|...++++.+.. ..| ....+..+...+...|++++|...++...+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 1224556667777777777777777777665431 111 2334566777777888888888887776543
Q ss_pred ---CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Q 011226 329 ---CATY-DIRVTNVMIGAYAKEGRLENAEELKERARRR-------GADPNAK-------TWEIFSDYYLRNGDMKLAVD 390 (490)
Q Consensus 329 ---~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~g~~~~A~~ 390 (490)
+..| ...++..+...|...|++++|...++++.+. ...+... .+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1111 3346677788888888888888888887752 1111111 11222233344555666666
Q ss_pred HHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 391 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+....... .....++..+..+|.+.|++++|...++++++..+
T Consensus 266 ~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 266 WYKACKVDS-------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --------C-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHhhcCCCC-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 777666553 13467788899999999999999999999887654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=123.12 Aligned_cols=171 Identities=14% Similarity=0.072 Sum_probs=119.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC------C
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEKMKEL-------NLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS------S 188 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 188 (490)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777788888888888888888877663 22234556677777788888888888888777653 1
Q ss_pred C-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 011226 189 I-MPDSYTYNVWMRALAAVNDISGAERVIEEMKRD------GRVAADWTTFSNLASIYVEAGLFEKAERALKELENR--- 258 (490)
Q Consensus 189 ~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 258 (490)
- .....++..+..++...|++++|...++++.+. +..+.....+..+...+...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223456677777888888888888888887764 212334456777888888888888888888887653
Q ss_pred ---cCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 259 ---NAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 259 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
+..| ...++..+..+|...|++++|...++++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 234667777788888888888888887765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-11 Score=104.17 Aligned_cols=210 Identities=12% Similarity=0.002 Sum_probs=148.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHH
Q 011226 226 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM 305 (490)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (490)
+.++..+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34567788888888888899999998888887665466777777888888888888888888888876543 45667778
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHH
Q 011226 306 IQVLVNLKDLPGAEKCFKEWESGCATYDI-------RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK---TWEIF 375 (490)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l 375 (490)
...+...|++++|...++...+..+. +. ..|..+...+...|++++|...|++..+. .|+.. .|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 88888888888888888888776554 44 44677777778888888888888888764 34322 23333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 376 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
...|. ..+...++++...+. .+...+.... ....+.+++|...++++.+..| .+..+...+...
T Consensus 160 ~~~~~-----~~~~~~~~~a~~~~~-------~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFY-----NNGADVLRKATPLAS-------SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQDQV 223 (228)
T ss_dssp HHHHH-----HHHHHHHHHHGGGTT-------TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHhccc-------CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHH
Confidence 34443 334455666666541 3344444433 3345668999999999999998 777777666544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-10 Score=107.44 Aligned_cols=271 Identities=13% Similarity=0.001 Sum_probs=175.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCcc----hHHHHHHHHHhcCCCCcHHHHHHHHHHCCC-CCCH----hhHHHH
Q 011226 129 LLNCYCKELMTEKAEALLEKMKELNLGFSSM----PFNSLMTLYAKTGHPEKIPAIIQEMKASSI-MPDS----YTYNVW 199 (490)
Q Consensus 129 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l 199 (490)
....+...|++++|...+++........+.. +++.+...+...|++++|...+++..+... .++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556777788877777766643211111 345555667777888888777777654210 0111 234556
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCC---CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC----CHHHHHH
Q 011226 200 MRALAAVNDISGAERVIEEMKRDG---RVA--A-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHR----DLSAYQF 269 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~ 269 (490)
...+...|++++|...+++..+.. ..+ | ....+..+...+...|++++|...+++........ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 677888888888888888776531 011 2 23456667788888888888888888876643221 2345667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCCc-hhHH-----HHHHHHHhcCChhhHHHHHHHHHhcCCCCC---hhhHHHH
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTAN-ISYL-----NMIQVLVNLKDLPGAEKCFKEWESGCATYD---IRVTNVM 340 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 340 (490)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........++ ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 778888889999999888887654322221 1121 223446788999999988888765433211 2245677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 341 IGAYAKEGRLENAEELKERARRR----GADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++.....
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 78888999999999999887642 211122 255566677888999999999999887663
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-10 Score=107.43 Aligned_cols=277 Identities=12% Similarity=0.038 Sum_probs=196.6
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHh----hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC----HHHHH
Q 011226 162 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY----TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFS 233 (490)
Q Consensus 162 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 233 (490)
......+...|++++|...+++........+.. .++.+...+...|++++|...+++.........+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456677999999999999988754222222 4566777888999999999999988763201122 23356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcc----CC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC----chhH
Q 011226 234 NLASIYVEAGLFEKAERALKELENRN----AH--R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA----NISY 302 (490)
Q Consensus 234 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 302 (490)
.+...+...|++++|...+++..... .. | ....+..+...+...|++++|...+++......... ...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 78888999999999999999876532 11 2 234566688889999999999999999876543221 2356
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh-hhHH-----HHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHH
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDI-RVTN-----VMIGAYAKEGRLENAEELKERARRRGADPN---AKTWE 373 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~ 373 (490)
..+...+...|++++|...++........++. ..+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 77888899999999999999987653222111 1222 233447789999999999998876432211 22456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 374 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
.+...+...|++++|...+++........ ...++. ..+..+..++...|+.++|...+++.....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 77788999999999999999887653100 011222 366777888999999999999999987643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=114.41 Aligned_cols=227 Identities=8% Similarity=-0.030 Sum_probs=117.0
Q ss_pred HHhcCCCCcHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----CHHHHHHHHH
Q 011226 168 YAKTGHPEKIPAIIQEMKASSI-MPD----SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-----DWTTFSNLAS 237 (490)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~ 237 (490)
+...|++++|...|++..+... .++ ..++..+..++...|+++.|...+++..+.....+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3445555555555555443210 011 23445555566666666666666655544210001 1334555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----hCCCCCchhHHHHHH
Q 011226 238 IYVEAGLFEKAERALKELENRNAH-R----DLSAYQFLITLYGQTGNLSEVYRIWRSLRL-----AFPNTANISYLNMIQ 307 (490)
Q Consensus 238 ~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~ 307 (490)
.|...|++++|.+.|++..+.... + ...++..+..+|...|++++|...+++... ..+. ...++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHH
Confidence 666666666666666655442100 1 123455566666666666666666666554 2222 2345556666
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCAT----YDIRVTNVMIGAYAKEGR---LENAEELKERARRRGADPN-AKTWEIFSDYY 379 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 379 (490)
.+.+.|++++|...+++..+.... .....+..+...+...++ +.+|...++. .+..|+ ...+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHH
Confidence 666677777777666665543211 112233444444555555 5555555554 111122 23445566677
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 011226 380 LRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~ 398 (490)
...|++++|...|++..+.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777776554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-11 Score=97.83 Aligned_cols=162 Identities=12% Similarity=-0.040 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK 170 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (490)
.+..+...+...|++++|...++.+.. .+.+..++..+...+...|++++|.+.+++..+... .+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 444555666666777777777776666 333455666666666667777777777666665431 233444444445555
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 250 (490)
.|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|..
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544432 223344444444455555555555555554443 33344444444444555555555555
Q ss_pred HHHHHHH
Q 011226 251 ALKELEN 257 (490)
Q Consensus 251 ~~~~~~~ 257 (490)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8e-11 Score=96.43 Aligned_cols=163 Identities=18% Similarity=0.099 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
.+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 3444555566666666666666665554 344555556666666666666666666666555322 2444555555555
Q ss_pred HhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 011226 275 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAE 354 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 354 (490)
...|++++|...++++....+. +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 5556666666655555544322 3334444445555555555555555554443322 3444444455555555555555
Q ss_pred HHHHHHHH
Q 011226 355 ELKERARR 362 (490)
Q Consensus 355 ~~~~~~~~ 362 (490)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5e-11 Score=117.84 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 011226 265 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 344 (490)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (490)
..|+.|..+|.+.|++++|++.|++..+..+. +...+..+..+|.+.|++++|...|++..+..+. +...|..+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 33444444444444444444444444443322 2334444444444444444444444444444333 344455555555
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhc
Q 011226 345 AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQE 423 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 423 (490)
...|++++|++.|++..+.+.. +...|..+...|...|++++|++.|+++++.. |+ ...+..+..++...
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--------P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--------PDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHhhhhhHHHhc
Confidence 5555555555555555543221 34445555555555555555555555555554 32 44555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 011226 424 KDVDGAEGFLEILKK 438 (490)
Q Consensus 424 g~~~~a~~~~~~~~~ 438 (490)
|++++|.+.++++++
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-11 Score=116.30 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=120.5
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...++.|..++.+.|++++|++.|++.++. .+.+..+|..+..+|.+.|++++|++.|++..+... -+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 456777777777777777777777777776 566677777777777777777777777777776543 24667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
+|...|++++|++.|++..+..+. +...+..+..++...|++++|...|++..+..+. +...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 777777777777777777776543 4556777777777778888888877777776555 66777777777788888877
Q ss_pred HHHHHHHHHH
Q 011226 353 AEELKERARR 362 (490)
Q Consensus 353 a~~~~~~~~~ 362 (490)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-10 Score=97.18 Aligned_cols=197 Identities=16% Similarity=0.067 Sum_probs=155.3
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 011226 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVA-ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQF 269 (490)
Q Consensus 191 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (490)
.|+..+......+...|++++|...|++..+. .+ ++...+..+..++...|++++|.+.|++..+... .+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL--TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHH
Confidence 45678888999999999999999999999997 45 7888888899999999999999999999998543 35678889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCCc-------hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHH
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTAN-------ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMI 341 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li 341 (490)
+..+|...|++++|...+++..+..+. +. ..|..+...+...|++++|...|+...+..+.. +...+..+.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999987653 33 357778888999999999999999998864320 246677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.+|...| ..+++.+...+ ..+...|.... ....+.+++|+..+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7776543 44555655543 22444444433 334567899999999999987
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-10 Score=101.72 Aligned_cols=202 Identities=10% Similarity=0.045 Sum_probs=127.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----cCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-C----chhHHHHHH
Q 011226 238 IYVEAGLFEKAERALKELENR----NAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-A----NISYLNMIQ 307 (490)
Q Consensus 238 ~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~ 307 (490)
.|...|++++|...|++.... |..++ ..+|+.+..+|...|++++|+..+++........ + ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666655432 11111 3456666666666777777776666655432111 1 235667777
Q ss_pred HHHhc-CChhhHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHH
Q 011226 308 VLVNL-KDLPGAEKCFKEWESGCATY-D----IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA------KTWEIF 375 (490)
Q Consensus 308 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l 375 (490)
.|... |++++|...|++..+..+.. + ..++..+...+...|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88888888888876532211 1 346788889999999999999999999985433222 146677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCC
Q 011226 376 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE--QEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~ 441 (490)
..++...|++++|+..|++.++.... .........+..++.++. ..+++++|...|+++...+|
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPN--FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 77888999999999999999876511 000001223455566664 45678888888877766554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-09 Score=93.74 Aligned_cols=248 Identities=10% Similarity=0.034 Sum_probs=153.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 280 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (490)
+-..-.|++..++.- ..+.. ..........+.++|...|+++.. ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e---~~~~~-~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE---IEKFS-KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHTTTCHHHHTHH---HHTSS-CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHhhHHHHHHHH---HHhcC-ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 334456777666652 22221 111122333345667777766531 12223433444443332 222
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA-TYDIRVTNVMIGAYAKEGRLENAEELKER 359 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (490)
|+..|++....+ .++..++..+..++...|++++|.+++......+. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566777665544 33445556777778888888888888888766654 22667777788888888888888888888
Q ss_pred HHHcCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHH
Q 011226 360 ARRRGADP-----NAKTWEIFSDY--YLRNG--DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 360 ~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 430 (490)
|.+. .| +..+...++.+ ....| ++.+|..+|+++.+.. |+...-..++.++.+.|++++|.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--------PTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------CSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------CCcccHHHHHHHHHHcCCHHHHH
Confidence 8774 45 24555555555 23333 7888888888887765 65334344444788888888888
Q ss_pred HHHHHHHHc----------CCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 431 GFLEILKKA----------VDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 431 ~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
+.++.+.+. ++ .|+.++..++......|+.+..++.+++.. .|+...
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p-~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVL-YKPTFLANQITLALMQGLDTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHS-SHHHHHHHHHHHHHHTTCTTHHHHHHHHHT--TCCCHH
T ss_pred HHHHHHHHhcccccccccCCC-CCHHHHHHHHHHHHHhChHHHHHHHHHHHh--CCCChH
Confidence 888876664 24 677777677777777788777777776654 455443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-11 Score=105.74 Aligned_cols=232 Identities=12% Similarity=0.078 Sum_probs=111.1
Q ss_pred hcCCCCcHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCCCHHHHHHHH
Q 011226 170 KTGHPEKIPAIIQEMKAS-------SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD------GRVAADWTTFSNLA 236 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~ 236 (490)
..|++++|...|++..+. ..+....++..+..++...|++++|...++++.+. +..+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345666666666555431 00112334445555555555555555555555443 10122233444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-CC--CCCchhHHHHHHHHHhcC
Q 011226 237 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FP--NTANISYLNMIQVLVNLK 313 (490)
Q Consensus 237 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~ 313 (490)
..|...|++++|.+.+++...... +. +. ......+..+...+...|
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIRE-------------------------------KVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHH-------------------------------HHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccHHHHHHHHHHHHHHHH-------------------------------HHcCCCChHHHHHHHHHHHHHHHcC
Confidence 555555555555555555433200 00 00 011223444455555555
Q ss_pred ChhhHHHHHHHHHhc------C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCH-HHHHHHHHH
Q 011226 314 DLPGAEKCFKEWESG------C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRR-------GADPNA-KTWEIFSDY 378 (490)
Q Consensus 314 ~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-~~~~~l~~~ 378 (490)
++++|...+++..+. . ......++..+...|...|++++|...++++.+. ...+.. ..|..+...
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 555555555554332 0 1112345566666677777777777777666542 111222 222222222
Q ss_pred HHhcCC------HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 379 YLRNGD------MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 379 ~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
+...+. +..+...++..... .......+..+...|...|++++|...++++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVD-------SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHTTCCCCC------------CCCCC-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222222 22222222221111 1123567888999999999999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.5e-11 Score=104.30 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=88.9
Q ss_pred CcchHHHHHHHHHhcCCCCcHHHHHHHHHHC------CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHC------C
Q 011226 157 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS------SIMP-DSYTYNVWMRALAAVNDISGAERVIEEMKRD------G 223 (490)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 223 (490)
...++..+...+...|++++|...++++.+. +-.| ...++..+..++...|++++|...+++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666666666667777776666666543 1112 2445667777777888888888877777654 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------cCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 224 RVAADWTTFSNLASIYVEAGLFEKAERALKELENR------NAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
..+....++..+...|...|++++|...+++..+. +..| ...++..+..+|...|++++|...+++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01334556777778888888888888888777653 1112 245666777778888888888888877664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.7e-11 Score=92.21 Aligned_cols=144 Identities=10% Similarity=0.088 Sum_probs=115.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011226 306 IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 385 (490)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 385 (490)
...+...|++++|+..+.......+. +...+..+...|...|++++|.+.|++.++.... +...|..+...|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 34445667888888888887665433 4556667888899999999999999999886433 677888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 386 KLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEG-FLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
++|+..|+++++.. | +...+..+...|.+.|++++|.+ +++++++..| .++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 99999999999887 5 47888899999999999877665 4689999998 889999988888888775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-09 Score=91.82 Aligned_cols=207 Identities=13% Similarity=0.017 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-C-chhH
Q 011226 228 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD---LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-A-NISY 302 (490)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~ 302 (490)
+...+..+...+.+.|++++|...|+++.+..+. + ...+..+..+|...|++++|...|+...+..+.. . ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3344444455555555555555555555443211 1 3344445555555555555555555555443311 1 1233
Q ss_pred HHHHHHHHh--------cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011226 303 LNMIQVLVN--------LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 374 (490)
Q Consensus 303 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 374 (490)
..+..++.. .|++++|...|+.+.+..+. +......+.. +..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 344444444 56666666666665554332 2222211111 0011000 0112456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCC
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE----------KDVDGAEGFLEILKKAVDDLG 444 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~ 444 (490)
+...|...|++++|+..|+++++.... .......+..+..+|... |++++|...++++++..| .+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~ 228 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPD----TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-DS 228 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-CC
Confidence 677888999999999999999887610 001245777788888766 899999999999999887 44
Q ss_pred ---HHhHHHHHHHHHhcC
Q 011226 445 ---VEVFEPLIRTYAAAG 459 (490)
Q Consensus 445 ---~~~~~~l~~~~~~~g 459 (490)
..+...+...+...+
T Consensus 229 ~~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLT 246 (261)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444555544433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.20 E-value=5.8e-09 Score=90.50 Aligned_cols=64 Identities=5% Similarity=-0.152 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELNL-GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKA 186 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 186 (490)
..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33333444444444555555555544433331 11233334444444444444444444444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-08 Score=86.12 Aligned_cols=239 Identities=10% Similarity=0.049 Sum_probs=161.8
Q ss_pred HHcCCh-hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHHH----Hh
Q 011226 204 AAVNDI-SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRDLSAYQFLITLY----GQ 276 (490)
Q Consensus 204 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 276 (490)
.+.|.. ++|+.+++.++.. .|.+..+|+.-...+...| +++++++.++.+....++ +..+|+.-...+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 344433 4677777777775 5666666776666666666 777777777777765442 344454433333 33
Q ss_pred c---CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChh--hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--
Q 011226 277 T---GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP--GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR-- 349 (490)
Q Consensus 277 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-- 349 (490)
. +++++++.+++.+.+..++ +...|+.-...+.+.|.++ ++.+.++.+.+..+. |...|+.-...+...++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 3 6677777777777776654 5556666566666667776 777788887777666 67777766666666665
Q ss_pred ----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 350 ----LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL-AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 350 ----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
++++++.++.++...+. |...|+..-..+.+.|+... +..+..++.+.+.. -..++..+..+...+.+.|
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD----QVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT----EESCHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHccC
Confidence 78888888888876554 77788877777777777443 55566666554300 1256788888888888899
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHHhHHHHHH
Q 011226 425 DVDGAEGFLEILKK-AVDDLGVEVFEPLIR 453 (490)
Q Consensus 425 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 453 (490)
+.++|.++++.+.+ .+| .....|+..++
T Consensus 273 ~~~~A~~~~~~l~~~~Dp-ir~~yW~~~~~ 301 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNP-IRSNFWDYQIS 301 (306)
T ss_dssp CHHHHHHHHHHHHHTTCG-GGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCh-HHHHHHHHHHh
Confidence 99999999999886 577 77777776554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-09 Score=92.77 Aligned_cols=168 Identities=11% Similarity=-0.025 Sum_probs=102.1
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CC-HHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAH-RD-LSAY 267 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~ 267 (490)
...+..+...+.+.|++++|+..|+.+.+. .+.+ ...+..+..+|.+.|++++|...|++..+..+. |. ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 344444555566666666666666666664 3333 455556666666666666666666666554221 11 2344
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHHhCCCCCchhH-----------------HHHHHHHHhcCChhhHHHHH
Q 011226 268 QFLITLYGQ--------TGNLSEVYRIWRSLRLAFPNTANISY-----------------LNMIQVLVNLKDLPGAEKCF 322 (490)
Q Consensus 268 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~~~ 322 (490)
..+..++.. .|++++|...|+++....+. +.... ..+...|...|++++|...|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 455555555 66666666666666655432 11222 45567778888888888888
Q ss_pred HHHHhcCCCC--ChhhHHHHHHHHHhc----------CChhHHHHHHHHHHHc
Q 011226 323 KEWESGCATY--DIRVTNVMIGAYAKE----------GRLENAEELKERARRR 363 (490)
Q Consensus 323 ~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~ 363 (490)
+.+.+..+.. ....+..+..+|... |++++|...|+.+.+.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 8877654432 234566677777755 7788888888888875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-09 Score=96.58 Aligned_cols=209 Identities=8% Similarity=-0.013 Sum_probs=149.9
Q ss_pred CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-CHHHHHHHHHHHHHcCCHHH
Q 011226 173 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAA-DWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~ 247 (490)
++++|...|++. ...|...|++++|...|++.... | .++ ...+|+.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366777776655 44677889999999998887663 2 222 25678889999999999999
Q ss_pred HHHHHHHHHHccCC-CC----HHHHHHHHHHHHhc-CChhHHHHHHHHHHHhCCCCC-----chhHHHHHHHHHhcCChh
Q 011226 248 AERALKELENRNAH-RD----LSAYQFLITLYGQT-GNLSEVYRIWRSLRLAFPNTA-----NISYLNMIQVLVNLKDLP 316 (490)
Q Consensus 248 A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~ 316 (490)
|+..+++....... .+ ..+++.+..+|... |++++|+..|++..+..+..+ ..++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999887653211 11 35778888899996 999999999998876433211 245778889999999999
Q ss_pred hHHHHHHHHHhcCCCCChh------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH--hc
Q 011226 317 GAEKCFKEWESGCATYDIR------VTNVMIGAYAKEGRLENAEELKERARRRGADPNAK------TWEIFSDYYL--RN 382 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~ 382 (490)
+|...|+...+..+..... .+..+..++...|++++|...|++..+. .|+.. .+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9999999988765543321 5677788899999999999999998763 33321 2344555554 45
Q ss_pred CCHHHHHHHHHHHHhcC
Q 011226 383 GDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 383 g~~~~A~~~~~~~~~~~ 399 (490)
+++++|+..|+++....
T Consensus 254 ~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp TTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHhccCCccH
Confidence 67888888887765544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-09 Score=80.87 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
+..+...+...|++++|..+++.+.+..+. +...+..+...+...|++++|..+++++.+.+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 344555555556666666666655544333 445555566666666666666666666665432 244555666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 382 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+..|
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 6777777777766666541 2455666666667777777777777776666554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-07 Score=87.58 Aligned_cols=343 Identities=11% Similarity=-0.024 Sum_probs=211.5
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC-HHHHHHHHhhcCC----CCCCHhHHHHHHHHHH----HcCCH
Q 011226 69 KLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG-IDAAENYFVDLPE----TSKNHLTYGSLLNCYC----KELMT 139 (490)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~----~~~~~~~~~~li~~~~----~~~~~ 139 (490)
|+++.+..+|+.....- |+...|...+....+.++ .+....+|+.... .+.+...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 77899999999887753 688888888877777663 3456666666544 2345677777776543 34678
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHh-------------cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 140 EKAEALLEKMKELNLGFSSMPFNSLMTLYAK-------------TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
+.+.++|++.+......-...|......-.. .+.+..|..+++.+...--..+...|...+.--...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8889999988874211111122211111100 011223344444433210001233454444432221
Q ss_pred C--C-----hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC
Q 011226 207 N--D-----ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN 279 (490)
Q Consensus 207 ~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (490)
+ - .+.+..+|+++... .+.+...|...+..+.+.|+.++|..++++.... +.+...+. .|+...+
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 1 0 34567899999886 6777888989999999999999999999999987 33433332 2222222
Q ss_pred hhHHHHHHHHHHHhCC---------CC---CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 280 LSEVYRIWRSLRLAFP---------NT---ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 280 ~~~a~~~~~~~~~~~~---------~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
.++. ++.+.+... .+ ....|...+....+.++.+.|..+|... .. +..+...|...+..-...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH
Confidence 2222 333322110 01 1234556666666788899999999998 32 223444554333322233
Q ss_pred -CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCCh
Q 011226 348 -GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV 426 (490)
Q Consensus 348 -~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 426 (490)
++.+.|..+|+...+.- .-+...+...+....+.|+.+.|..+|+++. .....|...+..-...|+.
T Consensus 333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----------k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----------KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----------CBHHHHHHHHHHHHHHSCH
T ss_pred CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCCCH
Confidence 36999999999998853 2234556667777788899999999999861 3467888888888888999
Q ss_pred HHHHHHHHHHHH
Q 011226 427 DGAEGFLEILKK 438 (490)
Q Consensus 427 ~~a~~~~~~~~~ 438 (490)
+.+..++++...
T Consensus 401 ~~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-09 Score=89.76 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 011226 230 TTFSNLASIYVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 308 (490)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (490)
..+......+...|++++|...|++..... |+ ...|.. ........ ........+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-----~~~~~~~~--------------~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-----TNVDKNSE--------------ISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-----HHSCTTSH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-----hhhcchhh--------------hhHHHHHHHHHH
Confidence 344445566677777777777777776632 22 222222 00000000 001112236666
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HH
Q 011226 309 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD--MK 386 (490)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~ 386 (490)
+...|++++|...|+...+..+. +...+..+...+...|++++|...|++..+..+. +...|..+...|...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 77777777777777777766555 6667777777777777777777777777775322 45566666666554443 23
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+...+....... |....+.....++...|++++|...|+++++..|
T Consensus 142 ~~~~~~~~~~~~~--------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 142 KLETDYKKLSSPT--------KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHC---CCC--------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhCCC--------chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3444444433211 2223344445556667777777777777777664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-09 Score=88.63 Aligned_cols=180 Identities=11% Similarity=-0.041 Sum_probs=106.5
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...+......+...|++++|+..|++..+. .|.+...|... ...... .........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~~~--------------~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDKNS--------------EISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCTTS--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcchh--------------hhhHHHHHHHHH
Confidence 344455666788999999999999999986 34444444330 000000 001122334566
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--h
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR--L 350 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~ 350 (490)
+|.+.|++++|+..|++..+..+. +...+..+...+...|++++|...|++..+..+. +...+..+...|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHH
Confidence 666777777777777776665543 4556666677777777777777777777666554 56666666666654443 2
Q ss_pred hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 351 ENAEELKERARRRGADPNAK--TWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 351 ~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+.+...++... .|+.. .+.....++...|++++|+..|++.++..
T Consensus 141 ~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 141 KKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33444444433 23332 23333445556677888888888887766
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.13 E-value=6.4e-08 Score=91.82 Aligned_cols=359 Identities=9% Similarity=-0.023 Sum_probs=224.4
Q ss_pred cC-CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCC-HHHHHHH
Q 011226 68 RK-LYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELM-TEKAEAL 145 (490)
Q Consensus 68 ~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~ 145 (490)
+| +++.|..+|+.+...- |. |+++.+..+|+......|+...|...+....+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777777777775443 33 78999999999999977899999999988877764 4567778
Q ss_pred HHHHHhC-CC-CCCcchHHHHHHHHH----hcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHH-------------Hc
Q 011226 146 LEKMKEL-NL-GFSSMPFNSLMTLYA----KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA-------------AV 206 (490)
Q Consensus 146 ~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------------~~ 206 (490)
|+..... |. ..+...|...+..+. ..++.+.+.++|+..+......-...|......-. ..
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 8877653 42 235577777776543 23567789999999987421111122222221111 11
Q ss_pred CChhHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 207 NDISGAERVIEEMKRDGRVA-ADWTTFSNLASIYVEAG--L-----FEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~--~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
+.+..|..+++.+... .+ .+...|...+..-...+ - .+++..+|+++.... +.+...|...+..+.+.|
T Consensus 151 ~~y~~ar~~y~~~~~~--~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPL--IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp HHHHHHHHHHHHHHHH--HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 2233445555554432 11 13345555554432221 1 346778999988754 356778888888889999
Q ss_pred ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC------------CCCChhhHHHHHHHHHh
Q 011226 279 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC------------ATYDIRVTNVMIGAYAK 346 (490)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~li~~~~~ 346 (490)
+.+.|..+++..... |....+.. .|....+.++. ++.+.+.- ......+|...+..+.+
T Consensus 228 ~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp CHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 999999999999987 33332211 22222222222 22222110 01122456777777777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcC
Q 011226 347 EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR-NGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEK 424 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 424 (490)
.++.+.|..+|+++ +. ...+...|......-.. .++.+.|..+|+..++.. |+ +..+...++...+.|
T Consensus 299 ~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--------~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--------PDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcC
Confidence 88999999999999 32 22344445432222222 336999999999999875 43 566777788888999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHH
Q 011226 425 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRL 469 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m 469 (490)
+.+.|..+|+++ . .....|...+..-...|+ .+..+++..
T Consensus 369 ~~~~aR~l~er~----~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 369 DEENARALFKRL----E-KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp CHHHHHHHHHHS----C-CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999997 2 468889999988888898 344444333
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-09 Score=106.17 Aligned_cols=173 Identities=12% Similarity=0.039 Sum_probs=145.4
Q ss_pred HHcCChhHHHHHHHHHH--------HCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 204 AAVNDISGAERVIEEMK--------RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
...|++++|++.+++.. +. .+.+...+..+...+.+.|++++|.+.|++..+... .+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHH
Confidence 78899999999999998 54 567788899999999999999999999999988654 46788899999999
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE 355 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 355 (490)
..|++++|...|++..+..+. +...+..+..++...|++++ ...|++..+..+. +...|..+..++...|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987654 56778889999999999999 9999999887766 77889999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 011226 356 LKERARRRGADPN-AKTWEIFSDYYLRNGD 384 (490)
Q Consensus 356 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 384 (490)
.|+++.+. .|+ ...+..+..++...++
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99998875 455 4566667777666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.9e-09 Score=79.27 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=36.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++...+. .+...+..+...+...|
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhc
Confidence 334444444444444444444433 223333344444444444444444444444433221 12333333333444444
Q ss_pred ChhHHHHHHHHHH
Q 011226 279 NLSEVYRIWRSLR 291 (490)
Q Consensus 279 ~~~~a~~~~~~~~ 291 (490)
++++|...++.+.
T Consensus 84 ~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 84 DYDEAIEYYQKAL 96 (136)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-08 Score=84.78 Aligned_cols=187 Identities=9% Similarity=0.008 Sum_probs=122.3
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH--HHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL--SAYQ 268 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~ 268 (490)
+...+..+...+...|++++|+..|+++.+.....+ ....+..+..+|.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556677788899999999999999988521112 1356778888999999999999999998875443211 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 011226 269 FLITLYGQ------------------TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA 330 (490)
Q Consensus 269 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 330 (490)
.+..++.. .|++++|...|+++.+..+.. .......... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~-~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS-QYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTC-TTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC-hhHHHHHHHH----------HHHHHHHH----
Confidence 45555544 345666666666666543321 1111111000 00000000
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 331 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.....+...|.+.|++++|...|+++.+.. |+. ..+..+..++.+.|++++|++.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 111345677889999999999999999863 332 467788889999999999999999998886
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-08 Score=86.57 Aligned_cols=187 Identities=17% Similarity=0.124 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch--hHH
Q 011226 228 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI--SYL 303 (490)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 303 (490)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|+..|+++.+..+..... .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445566778889999999999999999987543211 3567778889999999999999999998876543221 344
Q ss_pred HHHHHHHh------------------cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 304 NMIQVLVN------------------LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 304 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
.+..++.. .|+.++|...|+.+.+..+. +...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 44445543 34555555555555554332 22222111100 00000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 366 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.....+...|.+.|++++|+..|+++++.. |+ ...+..+..++.+.|++++|...++.+...+|
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--------PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--------cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011244567888999999999999999986 54 25688889999999999999999999888776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.8e-09 Score=103.16 Aligned_cols=173 Identities=10% Similarity=-0.029 Sum_probs=146.1
Q ss_pred HHcCCHHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh
Q 011226 240 VEAGLFEKAERALKELE--------NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN 311 (490)
Q Consensus 240 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (490)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|...|++..+..+. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77899999999999988 432 345678888999999999999999999999987654 56788889999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDC 391 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 391 (490)
.|++++|...|++..+..+. +...+..+..+|...|++++ ...|++..+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999988766 77888999999999999999 9999999986433 667888999999999999999999
Q ss_pred HHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCC
Q 011226 392 LEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKD 425 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 425 (490)
|+++.+.. |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--------TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--------cccHHHHHHHHHHHHccCC
Confidence 99998887 76 6677777778766555
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-09 Score=85.61 Aligned_cols=160 Identities=14% Similarity=0.010 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HH
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL-YG 275 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 275 (490)
..+...+...|++++|...|++..+. .|.+...+..+...+...|++++|...++....... +...+..+... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 34455566666666666666666554 455556666666666666666666666666544322 32222221111 11
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAE 354 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~ 354 (490)
..+...+|...+++..+..+. +...+..+...+...|++++|...|+.+.+..+.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 112223345555555554332 33444555555555555555555555555544332 2334555555555555555555
Q ss_pred HHHHHHH
Q 011226 355 ELKERAR 361 (490)
Q Consensus 355 ~~~~~~~ 361 (490)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.9e-09 Score=101.78 Aligned_cols=153 Identities=11% Similarity=0.026 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 011226 243 GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF 322 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (490)
|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 556666666666554322 23555666666666666666666666666554332 3445555666666666666666666
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 011226 323 KEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN---GDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 399 (490)
++..+..+. +...+..+..+|...|++++|.+.+++..+.... +...+..+...+... |++++|.+.+++.++.+
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 666555443 4555566666666666666666666666554221 344555555556666 66666666666666655
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=85.33 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=45.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011226 206 VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
.|++++|+..++..... .+.+...+..+...|.+.|++++|.+.|++..+..+ -+..+|..+..+|...|++++|+.
T Consensus 10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHH
Confidence 34444444444444332 222223333444444444444444444444444322 233444444444444444444444
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhh
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 317 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (490)
.|+...+..+. +...+..+...+.+.|+.++
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHH
Confidence 44444443322 23334444444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-08 Score=89.35 Aligned_cols=161 Identities=10% Similarity=-0.057 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 345 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (490)
.+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++.+....+. +..........+.
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~~~l~ 196 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHHHHHH
Confidence 3334444444555555555555555444332 2334444445555555555555555544433221 1111111222234
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC---HHHHHHHHHHHHh
Q 011226 346 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS---SETIRTFMRHFEQ 422 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 422 (490)
..++.++|...+++..+..+ .+...+..+...+...|++++|+..|.++++.. |+ ...+..++..+..
T Consensus 197 ~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--------p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXD--------LTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTGGGGHHHHHHHHHHHH
T ss_pred hhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------cccccchHHHHHHHHHHH
Confidence 44455555555555555422 134455555555555556666666555555554 22 3455555555555
Q ss_pred cCChHHHHHHHHHHH
Q 011226 423 EKDVDGAEGFLEILK 437 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~ 437 (490)
.|+.++|...+++.+
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 565555555555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-08 Score=89.82 Aligned_cols=166 Identities=10% Similarity=-0.058 Sum_probs=112.2
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHH-
Q 011226 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQF- 269 (490)
Q Consensus 191 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~- 269 (490)
.+...+..+...+...|++++|...|+++.+. .|.+...+..+...+.+.|++++|...++++.... |+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 34455666677777788888888888887776 56677777778888888888888888887776543 34332222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcC
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEG 348 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 348 (490)
....+...++.++|...+++.....+. +...+..+...+...|++++|...|..+.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 222355666677777777777766543 45566677777777777777777777777665442 2556777777777777
Q ss_pred ChhHHHHHHHHHH
Q 011226 349 RLENAEELKERAR 361 (490)
Q Consensus 349 ~~~~a~~~~~~~~ 361 (490)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.5e-09 Score=83.55 Aligned_cols=161 Identities=10% Similarity=-0.047 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH-HHh
Q 011226 93 QAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTL-YAK 170 (490)
Q Consensus 93 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 170 (490)
+......+.+.|++++|...|+.... .+.+...+..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34455566667777777777777666 33345666667777777777777777776665543 322222211111 112
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 250 (490)
.+...+|...+++..+.. +-+...+..+..++...|++++|...|+++.+......+...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222334555555555432 1134555555555666666666666666655542111123355555555666666666655
Q ss_pred HHHHHH
Q 011226 251 ALKELE 256 (490)
Q Consensus 251 ~~~~~~ 256 (490)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.5e-07 Score=80.19 Aligned_cols=216 Identities=10% Similarity=0.025 Sum_probs=131.3
Q ss_pred CcHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----HHc---CC
Q 011226 175 EKIPAIIQEMKASSIMP-DSYTYNVWMRALAAVN--DISGAERVIEEMKRDGRVAADWTTFSNLASIY----VEA---GL 244 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 244 (490)
++|+.+++.++..+ | +...|+.--.++...| +++++++.++.+... .|-+..+|+.-...+ ... ++
T Consensus 50 ~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhccccCC
Confidence 45666666666542 2 2334555555555555 667777777766665 455555555544444 334 56
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC------hh
Q 011226 245 FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS--EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD------LP 316 (490)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 316 (490)
+++++++++.+.+... .+..+|+.-.-++.+.|.++ ++++.++.+.+.++. +...|+.-...+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 6677777777666543 35566665555556666666 677777777666543 44555544444555554 66
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011226 317 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN-AEELKERARRRG--ADPNAKTWEIFSDYYLRNGDMKLAVDCLE 393 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (490)
++.+.++.+....+. |...|+.+...+.+.|+... +..+...+.+.+ -..+...+..+...+.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777766665 77777777777777666443 444555554432 12355667777777777788888888888
Q ss_pred HHHh
Q 011226 394 KAID 397 (490)
Q Consensus 394 ~~~~ 397 (490)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8776
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-08 Score=90.81 Aligned_cols=200 Identities=10% Similarity=0.052 Sum_probs=116.6
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 68 RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLE 147 (490)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 147 (490)
.|++++|.+++++..+... ... +...++++.|...|.. ....|...|++++|.+.|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~~---------~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TSF---------MKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CCS---------SSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-ccc---------cCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHHH
Confidence 5677888888887755431 110 1114667777766654 3456777888888888888
Q ss_pred HHHhCCCC-----CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCC---CCC--HhhHHHHHHHHHHcCChhHHHHHHH
Q 011226 148 KMKELNLG-----FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI---MPD--SYTYNVWMRALAAVNDISGAERVIE 217 (490)
Q Consensus 148 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~ 217 (490)
+..+.... .-..+|+.+...|...|++++|+..|++..+.-. .+. ..++..+..+|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 76653210 0134666777777778888888888777654310 111 2455566666666 77777777777
Q ss_pred HHHHCCC---C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHhcCChhHHHHHHH
Q 011226 218 EMKRDGR---V-AADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 218 ~~~~~~~---~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
+..+... . .....++..+...|.+.|++++|...|++....... ++ ...+..+..++...|++++|...|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7665310 0 001345666666777777777777777666542110 01 1234444455555566666666666
Q ss_pred HHH
Q 011226 289 SLR 291 (490)
Q Consensus 289 ~~~ 291 (490)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-08 Score=75.53 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 414 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~ 414 (490)
..+......|.+.|++++|+..|++.++.... +...|..+..++.+.|++++|+..+++.++... .+...|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-------KFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-------hhhHHHH
Confidence 45667788899999999999999998886433 677888888899999999999999999998861 4478889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
.+..++...|++++|...|+++++..| .+..++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P-~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDP-SNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHHh
Confidence 999999999999999999999999998 788888777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-08 Score=89.91 Aligned_cols=231 Identities=10% Similarity=0.096 Sum_probs=146.8
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 250 (490)
.|++++|.+++++..+.. +.. + +...++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 355566777776665431 100 0 00135555555555543 456777888888888
Q ss_pred HHHHHHHccCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC---CC--chhHHHHHHHHHhcCChhhHHH
Q 011226 251 ALKELENRNAHR-D----LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN---TA--NISYLNMIQVLVNLKDLPGAEK 320 (490)
Q Consensus 251 ~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~ 320 (490)
.|.+........ + ..+|+.+..+|...|++++|+..|++....... +. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 888775532111 1 346777888888889999999988877654211 11 2456677788877 99999999
Q ss_pred HHHHHHhcCCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 011226 321 CFKEWESGCATY-----DIRVTNVMIGAYAKEGRLENAEELKERARRRG----ADPN-AKTWEIFSDYYLRNGDMKLAVD 390 (490)
Q Consensus 321 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~ 390 (490)
.|++........ ...++..+...|...|++++|+..|++..+.. ..+. ...+..+...+...|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998875432111 14577888899999999999999999988631 1111 1255566667778899999999
Q ss_pred HHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHH
Q 011226 391 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGF 432 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 432 (490)
.|++.+ .... ............++.++ ..|+.+.+..+
T Consensus 217 ~~~~al-~~p~--~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPG--FSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTT--STTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCC--CCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999998 5411 00001123445555555 56777666653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.4e-08 Score=80.57 Aligned_cols=177 Identities=11% Similarity=0.025 Sum_probs=119.3
Q ss_pred CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC----CHHHHHH
Q 011226 175 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG----LFEKAER 250 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~ 250 (490)
.+|+++|++..+.| ++..+..+...+...+++++|...|++..+.| +...+..|...|.. + ++++|.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 35667777777664 66677777777777888888888888877754 45566667777766 5 7888888
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCC-CCchhHHHHHHHHHh----cCChhhHHHH
Q 011226 251 ALKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVLVN----LKDLPGAEKC 321 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 321 (490)
.|++..+.| +...+..|...|.. .+++++|+..|++..+.+.. .....+..|...|.. .++.++|...
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 888776643 45566667767766 67778888887777655431 014556666677766 6677788888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcC
Q 011226 322 FKEWESGCATYDIRVTNVMIGAYAKE-G-----RLENAEELKERARRRG 364 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~~~~~~ 364 (490)
|+...+.+ .+...+..|...|... | +.++|...|+...+.|
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77776652 1334556666666543 2 6777888877777765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-08 Score=97.48 Aligned_cols=156 Identities=8% Similarity=0.016 Sum_probs=94.9
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 250 (490)
.|++++|.+.|++..+.. +-+...+..+..++...|++++|...+++..+. .+.+...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777776542 224566677777777777777777777777775 45566777777777777777777777
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc---CChhhHHHHHHHHHh
Q 011226 251 ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL---KDLPGAEKCFKEWES 327 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 327 (490)
.+++..+... .+...+..+..+|...|++++|.+.+++..+..+. +...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 7777766543 34566777777777777777777777777665442 345566666777777 777777777777666
Q ss_pred cCCC
Q 011226 328 GCAT 331 (490)
Q Consensus 328 ~~~~ 331 (490)
.++.
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 5543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.5e-08 Score=79.91 Aligned_cols=163 Identities=12% Similarity=0.030 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC----ChhhHHHHHHHHHhcCCCCChhhHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK----DLPGAEKCFKEWESGCATYDIRVTNV 339 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (490)
...+..+...|...+++++|+..|++..+.+ +...+..+...|.. + +.++|.+.|+...+.+ +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444444444444444444332 22333333333433 3 4555555555544432 3344444
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCH
Q 011226 340 MIGAYAK----EGRLENAEELKERARRRGAD-PNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSS 410 (490)
Q Consensus 340 li~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~ 410 (490)
|...|.. .+++++|...|++..+.|.. .+...+..+...|.. .+++++|+.+|++..+.+ .+.
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--------~~~ 162 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--------RTG 162 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--------CTT
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--------CCH
Confidence 4444544 45666666666665554321 014455555555555 556666666666666653 233
Q ss_pred HHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQE-K-----DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 441 (490)
..+..|...|... | ++++|...|++..+.|.
T Consensus 163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3455555555432 2 66777777776666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-07 Score=71.05 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|+.+++++.+... .+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------ccHHHH
Confidence 46677778888888899999998888887532 3567778888888889999999999998888751 457788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 459 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (490)
..+...+...|++++|...++++.+..| .+...+..+...+...|
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcc
Confidence 8888889999999999999999988887 77788887777776554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-07 Score=81.69 Aligned_cols=162 Identities=9% Similarity=-0.057 Sum_probs=78.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCc----chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC-CC----HhhHHHH
Q 011226 130 LNCYCKELMTEKAEALLEKMKELNL-GFSS----MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIM-PD----SYTYNVW 199 (490)
Q Consensus 130 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l 199 (490)
+..+...|++++|.+++++..+... .|+. ..+..+...+...+++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3444455555555555555444211 0111 11223344444444555555555555542111 11 1245555
Q ss_pred HHHHHHcCChhHHHHHHHHHHH----C-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc----CCCC-HHHHHH
Q 011226 200 MRALAAVNDISGAERVIEEMKR----D-GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN----AHRD-LSAYQF 269 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-~~~~~~ 269 (490)
..+|...|++++|...|+++.+ . +..+....++..+...|.+.|++++|...+++..+.. ..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666666552 1 1011122355566666666666666666666554321 1111 345666
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHH
Q 011226 270 LITLYGQTGN-LSEVYRIWRSLR 291 (490)
Q Consensus 270 l~~~~~~~~~-~~~a~~~~~~~~ 291 (490)
+..+|...|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666663 466666666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-06 Score=76.25 Aligned_cols=237 Identities=11% Similarity=0.050 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc-C-ChhHHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQT-G-NLSEVYRI 286 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~ 286 (490)
++|+++++.++.. .+.+..+|+.--..+...| .+++++++++.+....+ .+..+|+.-..++... + ++++++++
T Consensus 71 e~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 71 ERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3455555555554 3444444544444444444 35555555555554332 2344444433333333 3 44555555
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHhcCChh--------hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-------hh
Q 011226 287 WRSLRLAFPNTANISYLNMIQVLVNLKDLP--------GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR-------LE 351 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~ 351 (490)
++.+.+..++ +...|+--...+.+.|.++ ++.+.++.+.+..+. |...|+.....+.+.++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHH
Confidence 5555443322 2333333222222233333 566666666665555 66666666555555554 56
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcCCCCCCCCcCCHH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDM--------------------KLAVDCLEKAIDTGRGDGGKWVPSSE 411 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~~~~~~~~~p~~~ 411 (490)
++++.++++....+. |...|+.+-..+.+.|+. ....++..++..... +...-.+++.
T Consensus 226 eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~ 303 (349)
T 3q7a_A 226 DELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL-PEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC-CSSCCSCCHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc-ccccCCCcHH
Confidence 777777777765433 566666655555555543 222222222222210 0011236788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHhHHHHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILK-KAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~ 454 (490)
.+..++..|...|+.++|.++++.+. +.+| ....-|+-.++.
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp-ir~~yw~~~~~~ 346 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ-MRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG-GGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh-HHHHHHHHHHHh
Confidence 89999999999999999999999987 4565 666666655543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.6e-06 Score=73.06 Aligned_cols=212 Identities=11% Similarity=0.082 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC-hhHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN-LSEVYR 285 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~ 285 (490)
+++++.+++.+... .|-+..+|+.-...+.+.+ .+++++.+++.+.+..+ .|..+|+.-.-++...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 34555555555554 4455555555444444444 24555555555555432 244444444444444444 345555
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
.++.+....+. |...|+.....+...+....+- ..+ . ...+.++++++.+.......+
T Consensus 167 ~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 167 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG-------PQG-R-------------LPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp HHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--------------C-------------CCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhCC
Confidence 55555544432 3333333322222221100000 000 0 000345667777777776533
Q ss_pred CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHH-----HHHHhcCChHHH
Q 011226 366 DPNAKTWEIFSDYYLRN-----------GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM-----RHFEQEKDVDGA 429 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~g~~~~a 429 (490)
. |...|+.+-..+.+. +.++++++.++++.+.. |+. .|+.+. ......|..+++
T Consensus 225 ~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--------pd~-~w~l~~~~~~~~~~~~~~~~~~~ 294 (331)
T 3dss_A 225 N-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--------PEN-KWCLLTIILLMRALDPLLYEKET 294 (331)
T ss_dssp T-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--------TTC-HHHHHHHHHHHHHHCTTTTHHHH
T ss_pred C-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--------ccc-chHHHHHHHHHHhhcccccHHHH
Confidence 3 555665444444333 45789999999999987 663 333222 222346788899
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 430 EGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
...+.++.+.+| ....-|.-+...+.
T Consensus 295 ~~~l~~l~~~Dp-~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 295 LQYFSTLKAVDP-MRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-chhhHHHHHHHHHH
Confidence 999999999998 77777777766553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-07 Score=72.01 Aligned_cols=119 Identities=15% Similarity=0.034 Sum_probs=96.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+...+..+...+...|++++|...|++..+... .+...+..+...+...|++++|+..++++.+.. ..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-------PTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCchHH
Confidence 456677788888888899999988888887532 266778888888888899999999999988876 135778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+..+..++...|++++|...++++.+..+ .+...+..+..++...|+
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcC
Confidence 88888889999999999999999988887 677788888888877664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-07 Score=80.17 Aligned_cols=62 Identities=13% Similarity=-0.063 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRR----GADPN-AKTWEIFSDYYLRNGD-MKLAVDCLEKAID 397 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 397 (490)
++..+...|.+.|++++|...+++..+. +..+. ...|..+..++.+.|+ +++|.+.++++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4444555555555555555555544431 11111 3344455555555552 3555555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.6e-07 Score=78.66 Aligned_cols=172 Identities=10% Similarity=0.012 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCc-----hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC---CC--hh
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN-----ISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT---YD--IR 335 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 335 (490)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+......... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677788888888887776654332111 12334556667788899999888887653221 11 34
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRR-GADPN-----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS 409 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~ 409 (490)
+++.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|+..+++.++..... .....-
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CcHHHH
Confidence 7888899999999999999999998731 01222 1577888889999999999999999988653100 001112
Q ss_pred HHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 011226 410 SETIRTFMRHFEQEKDVDGA-EGFLEILKK 438 (490)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 438 (490)
..+|..+..+|.+.|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67889999999999999999 777888765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.8e-07 Score=76.29 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
+..+...+...|++++|...|+... .|+...+..+...|...|++++|...|++..+... .+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 3445566677777888777777653 34667777888888888888888888888877532 356677778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCC----------CcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 011226 382 NGDMKLAVDCLEKAIDTGRGDGGK----------WVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~~~~~----------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (490)
.|++++|+..|+++.+.... .. ..| ....+..+..++...|++++|...++++.+..|.........
T Consensus 84 ~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG--NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT--CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred cccHHHHHHHHHHHHHhCCC--ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 88888888888888876410 00 112 247888999999999999999999999999987544444444
Q ss_pred HHHHH
Q 011226 451 LIRTY 455 (490)
Q Consensus 451 l~~~~ 455 (490)
.+..+
T Consensus 162 a~~~~ 166 (213)
T 1hh8_A 162 AMECV 166 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-07 Score=69.42 Aligned_cols=120 Identities=13% Similarity=-0.032 Sum_probs=97.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|+..+++..+... .+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-------AYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-------cCHHH
Confidence 345667777888888899999999988887532 3567778888888889999999999999888751 34778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (490)
+..+...+...|++++|...++++.+..| .+...+..+..++...|+.
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 88888889999999999999999998887 7888888888888887763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-07 Score=76.59 Aligned_cols=99 Identities=9% Similarity=0.012 Sum_probs=45.5
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC---------
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR--------- 262 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------- 262 (490)
+...+..+..++...|++++|...|++..+. .+.+...+..+..+|...|++++|.+.|++..+.....
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 113 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGT
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhc
Confidence 3344444444444444444444444444443 33344444444444444555555555444444422110
Q ss_pred ------CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 263 ------DLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 263 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
....+..+..+|...|++++|...|+...+
T Consensus 114 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 114 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 013444445555555555555555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.5e-08 Score=75.18 Aligned_cols=101 Identities=14% Similarity=0.034 Sum_probs=79.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+...+..+...+.+.|++++|...|+++.+..+. +...|..+..+|...|++++|+..|+++++... .++..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------NDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-------SCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-------CCcHH
Confidence 4456677777888888888888888888876432 667778888888888888888888888888761 34677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
|..+..+|...|++++|...|+++++..+
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888775
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.6e-08 Score=75.58 Aligned_cols=111 Identities=9% Similarity=-0.000 Sum_probs=84.1
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011226 322 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG 401 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 401 (490)
++.+....+. +...+..+...+...|++++|...|+.....+.. +...|..+..+|...|++++|+..|++++....
T Consensus 10 ~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p- 86 (148)
T 2vgx_A 10 IAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI- 86 (148)
T ss_dssp HHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-
Confidence 4444443322 4556667777888888888888888888876432 667777788888888888888888888888761
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 402 DGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 402 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+...+..+..++...|++++|...|+++++..|
T Consensus 87 ------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 87 ------XEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp ------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3467788888888888899999888888888776
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-07 Score=73.77 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (490)
.+..+...+.+.|++++|...|+.+....+. +...|..+..+|...|++++|...|++..+..+. +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 4566667777777788888777777776655 6777777777777777888888777777775432 4566777777777
Q ss_pred hcCCHHHHHHHHHHHHhcC
Q 011226 381 RNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~ 399 (490)
..|++++|+..|++.++..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 7778888888777777776
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.4e-06 Score=74.81 Aligned_cols=178 Identities=8% Similarity=0.005 Sum_probs=114.7
Q ss_pred HHHHhcc-CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhC-CHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHc-C
Q 011226 62 LKKLRDR-KLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQ-GIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKE-L 137 (490)
Q Consensus 62 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~-~ 137 (490)
++...+. ...++|+++++.+...+ +-+..+++.--.++...| .+++++++++.+.. .+.+..+|+.-...+.+. +
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 3333333 44467888888888776 334555666666666677 48888888888777 445566777766666665 6
Q ss_pred -CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCC--------cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 138 -MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPE--------KIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 138 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
++++++++++.+.+... .|..+|+.-.-.+.+.+.++ ++++.++++.+.... |...|+....++.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 77888888888887654 46666666555555555555 677777777665433 55666666555555554
Q ss_pred -------hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCC
Q 011226 209 -------ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL 244 (490)
Q Consensus 209 -------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (490)
++++++.+++.+.. .+-|...|+.+-..+.+.|.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 46666666666665 56666666665555555444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-07 Score=70.29 Aligned_cols=111 Identities=10% Similarity=-0.003 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
..+......|.+.|++++|++.|++.++... .+...|..+..++.+.|++++|+..++++++.+| .+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-------ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHH
Confidence 4566778889999999999999999999871 4588999999999999999999999999999999 8999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHHHhh
Q 011226 450 PLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 488 (490)
Q Consensus 450 ~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c 488 (490)
.+..+|...|++.+++...-+...+.|+......-.+-|
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999998888877777777888876654444444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-06 Score=76.63 Aligned_cols=166 Identities=7% Similarity=-0.068 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-----chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC---CC--Hh
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSS-----MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIM---PD--SY 194 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p~--~~ 194 (490)
.+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677778888888777776664321100 11223334445556666666666665542111 11 23
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC----CC-CH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGR-VAAD----WTTFSNLASIYVEAGLFEKAERALKELENRNA----HR-DL 264 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~-~~ 264 (490)
+++.+...|...|++++|...|++..+... .+.+ ..++..+...|.+.|++++|...+++..+... .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 556666666666777777766666652100 1111 14556666666666666666666666543210 00 13
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHH
Q 011226 265 SAYQFLITLYGQTGNLSEV-YRIWRSL 290 (490)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a-~~~~~~~ 290 (490)
.+|..+..+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4555566666666666666 4445544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-07 Score=74.75 Aligned_cols=122 Identities=7% Similarity=0.043 Sum_probs=75.1
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 011226 311 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY-YLRNGDM--KL 387 (490)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 387 (490)
..|++++|...++......+. +...+..+...|...|++++|...|+++.+.... +...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 456666666666666655443 5566666666777777777777777776664322 44555555555 5566666 77
Q ss_pred HHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 388 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 388 A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
|+..++++++... .+...+..+...+...|++++|...++++.+..|
T Consensus 100 A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 100 TRAMIDKALALDS-------NEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 7777777776651 2356666666677777777777777777777665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=6.8e-08 Score=84.72 Aligned_cols=193 Identities=12% Similarity=0.006 Sum_probs=113.8
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNC 132 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~ 132 (490)
+...+..+...+.+.|++++|+..|+...... +.+...+..+..++.+.|++++|...++.... .+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566677777888888888888888887765 33667777788888888888888888888877 34456678888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSS-MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISG 211 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 211 (490)
+...|++++|...|++..+.+ |+. ..+...+....+. .++.. +..........+......+.. + ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 888888888888888877643 211 1111111111111 01111 112222223333333333322 2 2567777
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 011226 212 AERVIEEMKRDGRVAADWTTFSNLASIYVEA-GLFEKAERALKELEN 257 (490)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 257 (490)
|.+.++...+. .+.+......+...+.+. +.+++|.++|....+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777666653 233333333343444443 456666666665543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.4e-07 Score=68.13 Aligned_cols=114 Identities=11% Similarity=0.005 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
...+..+...+...|++++|...|++..+... .+...|..+..++...|++++|+..+++.++... .+...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------NFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CcHHHH
Confidence 34566777888888999999999998887643 2667888888888899999999999999988861 347788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHhHHHHHHHHH
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAV------DDLGVEVFEPLIRTYA 456 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~ 456 (490)
..+..++...|++++|...|+++.+.. | .+..++..+..+..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p-~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGS-SAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch-hHHHHHHHHHHHHH
Confidence 888889999999999999999998887 5 56666666655543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=8.3e-07 Score=70.68 Aligned_cols=129 Identities=12% Similarity=-0.014 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (490)
.+..+...+...|++++|...|.......+. +..++..+...+...|++++|...+++..+... .+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 3445556666667777777777666655443 566666777777777777777777777776532 24566777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 011226 381 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR--TFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
..|++++|...++++.+... .+...+. ..+..+...|++++|...+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77888888888887777651 2344443 333336667777888777776544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=9.3e-07 Score=70.40 Aligned_cols=126 Identities=10% Similarity=0.037 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
.+..+...+...|++++|...|++..+. .+.+..++..+...+...|++++|...+++...... .+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 3445555566666666666666666654 344555666666666666666666666666655432 2445555555566
Q ss_pred HhcCChhHHHHHHHHHHHhCCCCCchhH--HHHHHHHHhcCChhhHHHHHHH
Q 011226 275 GQTGNLSEVYRIWRSLRLAFPNTANISY--LNMIQVLVNLKDLPGAEKCFKE 324 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~ 324 (490)
...|++++|...|++.....+. +...+ ...+..+...|++++|...+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 6666666666666665554332 22222 1222224444555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-07 Score=79.76 Aligned_cols=188 Identities=11% Similarity=-0.080 Sum_probs=122.0
Q ss_pred ccCCchHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhhCCHHHHHHHHhhcCCCCCCH----------------
Q 011226 67 DRKLYYPALKLSENMEKRGMNKTVSDQAIH-------LDLVAKVQGIDAAENYFVDLPETSKNH---------------- 123 (490)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------- 123 (490)
..++...|.+.|..+.... +-....|..+ ...+.+.++..++...+.......|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4788888999999887776 2345556655 455555555566655555544422221
Q ss_pred ------hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC--Hhh
Q 011226 124 ------LTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD--SYT 195 (490)
Q Consensus 124 ------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~ 195 (490)
..+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 123345666777888888888888877655 433355555567778888888888887444321 111 235
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAA--DWTTFSNLASIYVEAGLFEKAERALKELENRN 259 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 259 (490)
+..+..++...|++++|+..|++..... ..| ..........++.+.|+.++|...|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5667777888888888888888877532 313 33455667777778888888888888887754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-07 Score=76.05 Aligned_cols=121 Identities=7% Similarity=0.092 Sum_probs=68.6
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--hH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA-YAKEGRL--EN 352 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~--~~ 352 (490)
..|++++|...++......+. +...+..+...+...|++++|...|+...+..+. +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 345566666666665554432 3445555666666666666666666665554433 45555555555 5566666 66
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|...++.+.+.... +...+..+...+...|++++|+..|+++.+..
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 66666666664322 34555566666666666666766666666665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-06 Score=65.35 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++++..... .+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 34455555555666666666666665554 344455555555666666666666666655554322 244455555555
Q ss_pred HHhcCChhHHHHHHHHHHHhC
Q 011226 274 YGQTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ 294 (490)
+...|++++|...++++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 555566666665555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-06 Score=64.86 Aligned_cols=112 Identities=15% Similarity=0.027 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
...+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++..+... .+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------DWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------ccHHHH
Confidence 45566677778888888888888888877532 2566777777788888888888888888888761 347778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
..+..++...|++++|...++++.+..| .+...+..+...
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 115 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 8888888888888888888888888877 666666665544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-06 Score=66.29 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|+++.|...+++.... .+.+...+..+...+...|++++|...++....... .+...+..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 34444555555555555555555555554 344455555555555555555555555555554322 234445555555
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC
Q 011226 274 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 313 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (490)
+...|++++|...|++.....+. +...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 55555555555555555544322 2333344444444433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=82.61 Aligned_cols=195 Identities=9% Similarity=-0.020 Sum_probs=125.5
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|...+++..+... .+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 4556677778888889999999999888886 566788888888888899999999998888877533 3567788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
.+|...|++++|...|+...+..+.. ...+...+....+. ..+. -+..........+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc-hhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 88888999999999888877654321 11111112211111 1111 1122222333334444444433 2 268888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHHHhc
Q 011226 352 NAEELKERARRRGADPNAKTWEIFS-DYYLRN-GDMKLAVDCLEKAIDT 398 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~-g~~~~A~~~~~~~~~~ 398 (490)
+|.+.++...+. .|+......-+ ..+.+. +.+++|.++|.++.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 898888887764 45544333323 333333 5678899999887764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-07 Score=71.67 Aligned_cols=105 Identities=10% Similarity=-0.039 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
...+..+...+...|++++|...|+.....+.. +...|..+..++...|++++|+..|++++.... .++..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~ 89 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-------NEPRFP 89 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCTHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCcHHH
Confidence 344555666777788888888888887775332 566677777778888888888888888887761 346667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
..+..++...|++++|...|+++++..| .++..
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 122 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAA-AQPAH 122 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-TCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCcch
Confidence 7777788888888888888888877765 34333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-07 Score=75.62 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=40.1
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc----CC-CCHHHHHHHHHHHHhcCC
Q 011226 205 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN----AH-RDLSAYQFLITLYGQTGN 279 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~ 279 (490)
..|++++|.++++.+... ......++..+...+...|++++|...+++..... .. ....++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 455566666644443321 22344455555666666666666666665554311 00 112334444555555555
Q ss_pred hhHHHHHHHHHH
Q 011226 280 LSEVYRIWRSLR 291 (490)
Q Consensus 280 ~~~a~~~~~~~~ 291 (490)
+++|...+++..
T Consensus 82 ~~~A~~~~~~al 93 (203)
T 3gw4_A 82 WDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-06 Score=66.78 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++..+... .+...+..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 33444444555555555555555555543 333444455555555555555555555555444322 233444444445
Q ss_pred HHhcCChhHHHHHHHHHHHh
Q 011226 274 YGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (490)
+...|++++|...|++....
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555544443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-07 Score=75.34 Aligned_cols=132 Identities=11% Similarity=0.091 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--cC--CC--C
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADWTTFSNLASIYVEAGLFEKAERALKELENR--NA--HR--D 263 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~--~~--~ 263 (490)
..+..+...+...|++++|...+++.... +..+....++..+...+...|++++|.+.+++.... .. .+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34444555555555555555555554441 101122334455555566666666666665554432 00 00 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-CC----chhHHHHHHHHHhcCChhhHHHHHHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGAEKCFKEW 325 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 325 (490)
...+..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 233444555555556666666555554422100 01 112334444455555555555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.9e-07 Score=70.07 Aligned_cols=96 Identities=11% Similarity=-0.086 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
.+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|...|++.....+ .+...+..+..+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 3444445555555555555555555554 344555555555555555555555555555554332 2334444555555
Q ss_pred HhcCChhHHHHHHHHHHHh
Q 011226 275 GQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (490)
...|++++|...|+...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-07 Score=77.48 Aligned_cols=188 Identities=11% Similarity=-0.085 Sum_probs=109.0
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHccCCCC--------------
Q 011226 205 AVNDISGAERVIEEMKRDGRVAADWTTFSNL-------ASIYVEAGLFEKAERALKELENRNAHRD-------------- 263 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------- 263 (490)
..++...|.+.|.++... .|.....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 466777777777777775 56666666665 3444444444444444443332 1111
Q ss_pred --------HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--
Q 011226 264 --------LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYD-- 333 (490)
Q Consensus 264 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 333 (490)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 1122334556667777777777777665543 222244445556677777777777776443321 111
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23556667777777777777777777764322143 2244455556677777777777777777776
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-07 Score=77.48 Aligned_cols=118 Identities=9% Similarity=-0.068 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPN---------------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
..+..+...+...|++++|...|++..+...... ...|..+..+|...|++++|+..++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455566666777777777777777766322111 2677888889999999999999999999986
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
..+...+..+..++...|++++|...|+++++..| .+..++..+..++...++
T Consensus 119 -------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 119 -------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp -------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHH
T ss_pred -------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHH
Confidence 14588899999999999999999999999999998 789999999999888776
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-05 Score=69.37 Aligned_cols=171 Identities=8% Similarity=-0.001 Sum_probs=98.9
Q ss_pred HHhccCCch-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC----------HHHHHHHHhhcCC-CCCCHhHHHHHHH
Q 011226 64 KLRDRKLYY-PALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG----------IDAAENYFVDLPE-TSKNHLTYGSLLN 131 (490)
Q Consensus 64 ~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~-~~~~~~~~~~li~ 131 (490)
...+.|.++ +|+++++.+...+ +-+..+++.--.++...+. +++++.+++.+.. .+.+..+|+.-.-
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334455555 7888888887776 2233344443333333322 5666777766666 4456667766666
Q ss_pred HHHHcC--CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC-CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc--
Q 011226 132 CYCKEL--MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP-EKIPAIIQEMKASSIMPDSYTYNVWMRALAAV-- 206 (490)
Q Consensus 132 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-- 206 (490)
.+.+.+ ++++++.+++.+.+.+. .|..+|+.-.-.+...|.. +++++.++.+++..+. |...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhh
Confidence 666666 36777777777777654 4566666665555666663 6677777777665432 555565555444443
Q ss_pred ------------CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 011226 207 ------------NDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 207 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (490)
+.++++++.+...... .|-|..+|+.+-..+
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLL 237 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 2345556666665554 455555555443333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=69.45 Aligned_cols=105 Identities=16% Similarity=-0.018 Sum_probs=78.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+...+..+...+...|++++|+..|++..+.... +...|..+..+|...|++++|+..|++.++... .+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-------KYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHH
Confidence 3456667777778888888888888888775322 566777777788888888888888888887761 34777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE 446 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 446 (490)
|..+..++...|++++|...|+++++..| .+..
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 114 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAEG-NGGS 114 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHS-SSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchH
Confidence 77888888888888888888888888776 4443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-06 Score=79.34 Aligned_cols=123 Identities=11% Similarity=-0.001 Sum_probs=101.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--------------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
+...+..+...|...|++++|...|++..+...... ...|..+..+|.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777888888888888888777532211 478888889999999999999999999998
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcH
Q 011226 399 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP 463 (490)
Q Consensus 399 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 463 (490)
.. .+...+..+..+|...|++++|...|+++++..| .+..++..+..++...|+..+
T Consensus 226 ~p-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 226 DS-------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp CT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 61 4588899999999999999999999999999998 888999999999999888443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=65.73 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----H
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----S 410 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~----~ 410 (490)
..+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|++.+++.++.... ..++ .
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE----TRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc----cchhhHHHH
Confidence 45667888899999999999999999986433 5778888999999999999999999999876511 0111 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPL 451 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 451 (490)
.+|..+..++...|++++|.+.|++.+...+ |+.+...|
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~--~~~~~~~l 122 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR--DPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--CHHHHHHH
Confidence 4678888999999999999999999998764 55554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-06 Score=77.29 Aligned_cols=137 Identities=9% Similarity=-0.094 Sum_probs=63.6
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...+..+...+.+.|++++|+..|++..+. .+.+... ..+.+.++- . .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~------------~~~~~~~~~-~-------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF------------SNEEAQKAQ-A-------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC------------CSHHHHHHH-H-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC------------ChHHHHHHH-H-------HHHHHHHHHHH
Confidence 445566666666677777777777666664 2222100 000000000 0 00234444444
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
+|.+.|++++|+..+++..+..+. +...+..+..+|...|++++|...|+...+..+. +...+..+..++...|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444322 3334444455555555555555555555444333 34444455555555555554
Q ss_pred H
Q 011226 353 A 353 (490)
Q Consensus 353 a 353 (490)
|
T Consensus 283 a 283 (336)
T 1p5q_A 283 R 283 (336)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.5e-06 Score=65.45 Aligned_cols=113 Identities=16% Similarity=-0.024 Sum_probs=88.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP 408 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p 408 (490)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|+..+++..+... .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-------G 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-------C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-------c
Confidence 5566777778888888888888888888874 455 56677777888888999999999988888751 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 409 SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+...+..+..++...|++++|...|+++.+..| .+..++..+....
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP-KNKVFQEALRNIS 143 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHH
Confidence 577788888888889999999999999888887 6777776665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-06 Score=64.88 Aligned_cols=101 Identities=13% Similarity=-0.029 Sum_probs=75.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+...+..+...+...|++++|...|+...+.... +...|..+...+...|++++|+..+++.++... .+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~ 79 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-------QSVKA 79 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------hhHHH
Confidence 5566777777778888888888888877775322 566777777777888888888888888877751 34677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+..+..++...|++++|...|+++.+..|
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 77788888888888888888888777655
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-07 Score=77.21 Aligned_cols=172 Identities=9% Similarity=-0.026 Sum_probs=90.7
Q ss_pred HHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCC
Q 011226 97 LDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPE 175 (490)
Q Consensus 97 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 175 (490)
+......|+++.+.+.|+.-.. .......+..+...+...|++++|++.|++..... |+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~----------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ----------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-----------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-----------
Confidence 3444455677777777765443 11234466777788888899999999998888753 221111000
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
...-... ......+..+..++...|++++|+..++...+. .+.+...+..+..+|...|++++|...|++.
T Consensus 78 -~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 -ILLDKKK------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -HHHHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -hHHHHHH------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000000 001345556666677777777777777777765 4556666777777777777777777777776
Q ss_pred HHccCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHH
Q 011226 256 ENRNAHRDLSAYQFLITLYGQTGNLSEVY-RIWRSLR 291 (490)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 291 (490)
..... .+...+..+..++...++..++. ..+..+.
T Consensus 149 l~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 149 ASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHST-TCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66432 24555666666666666665555 4444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-06 Score=64.74 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA--DPN----AKTWEIF 375 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~p~----~~~~~~l 375 (490)
+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+++.++.+. .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 445566666666666666666666665544 556666666777777777777777766665311 111 1245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHH
Q 011226 376 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT 415 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~ 415 (490)
..++...|++++|++.|++.+... |++.+...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~--------~~~~~~~~ 121 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEF--------RDPELVKK 121 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--------CCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--------cCHHHHHH
Confidence 667777788888888888777765 66655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-06 Score=62.92 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC--CH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SS 410 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p--~~ 410 (490)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|+..+++..+... . +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~ 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-------DEYNK 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-------CTTCH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-------ccchH
Confidence 344555666667777777777777777766532 2455666666777777777777777777777651 2 46
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQE-KDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~ 441 (490)
..+..+..++... |++++|.+.++++....|
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 6677777777777 777777777777777665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-06 Score=64.79 Aligned_cols=107 Identities=9% Similarity=-0.045 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
...|......+.+.|++++|+..|++.++... .+...|..+..++.+.|++++|...++++++.+| .+..+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHH
Confidence 34667778889999999999999999999871 4588999999999999999999999999999998 889999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHhhCCCC------CCHHHHHH
Q 011226 449 EPLIRTYAAAGRTSPVMLRRLKMEKVE------VSEASKKL 483 (490)
Q Consensus 449 ~~l~~~~~~~g~~~~~~~~~m~~~~~~------p~~~~~~~ 483 (490)
..+..+|...|++.+++....+...+. |+......
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~ 116 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ 116 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHH
Confidence 999999999999777776555555566 66554433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=67.53 Aligned_cols=95 Identities=14% Similarity=-0.001 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|...|+......+ .+...+..+..+|.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 334445555666666666666666554 445555555566666666666666666666555432 23444555555566
Q ss_pred hcCChhHHHHHHHHHHHh
Q 011226 276 QTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (490)
..|++++|...|+.....
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-06 Score=61.99 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC--CHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLI 271 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 271 (490)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++..+... . +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHH
Confidence 34455555666666666666666666654 344555666666666666666666666666655322 2 345555666
Q ss_pred HHHHhc-CChhHHHHHHHHHHHhCC
Q 011226 272 TLYGQT-GNLSEVYRIWRSLRLAFP 295 (490)
Q Consensus 272 ~~~~~~-~~~~~a~~~~~~~~~~~~ 295 (490)
.++... |++++|.+.++......+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 666666 666666666666655443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=9.6e-06 Score=59.92 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++...... .+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 34444555555666666666666665554 344555555555556666666666666655555322 234455555555
Q ss_pred HHhcCChhHHHHHHHHHHHh
Q 011226 274 YGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (490)
+...|++++|...++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 55555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3e-06 Score=64.14 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS---- 409 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~---- 409 (490)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..++++.+.... ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----NREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----STTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc----cchhHHHH
Confidence 3566778888899999999999999998864 236777888888999999999999999999887510 0122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 410 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
...+..+..++...|++++|...++++.+..+ +...+..+..+...
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHH
Confidence 77888999999999999999999999999875 66666666665544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.6e-06 Score=63.69 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHH
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRT 415 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~ 415 (490)
+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..|++.++.. | +...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~ 90 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVHAA 90 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHH
Confidence 445556677777777777777777765322 56666677777777777777777777777776 4 3667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 416 FMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 416 l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+..++...|++++|...++++++..|
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777777777777777777777665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-05 Score=60.56 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=67.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----HH
Q 011226 339 VMIGAYAKEGRLENAEELKERARRRGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SE 411 (490)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~----~~ 411 (490)
.+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|+..++++.+.. |+ ..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~ 77 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--------PTHDKAAG 77 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTSTTHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--------CCCcccHH
Confidence 4455666777777777777777764322 22 355566667777777777777777777765 33 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
.+..+..++...|++++|...|+++.+..| .+..+..
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 114 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYP-GSDAARV 114 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CChHHHH
Confidence 566777777777777777777777777765 4444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.7e-06 Score=64.66 Aligned_cols=101 Identities=17% Similarity=0.003 Sum_probs=70.6
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|++...... .+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 3445666667777777777777777777775 455677777777777777777777777777766543 3466677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCC
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFP 295 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~ 295 (490)
.+|...|++++|...|++..+..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 777777777777777777766543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.5e-06 Score=63.77 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA--DPN----AKTWEI 374 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 374 (490)
.+..+...+...|++++|...+.......+. +...+..+...+...|++++|...++++.+... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444555556666666666666665554433 455566666666666777777776666665321 111 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 419 (490)
+...+...|++++|.+.|+++.+.. |+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--------RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--------CCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 6667777777777777777777765 555555444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-05 Score=75.01 Aligned_cols=169 Identities=11% Similarity=-0.022 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-Cch----hHHHHHHHHHhcCChhhHHHHHHHHHh----cCCCC-Chhh
Q 011226 267 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-ANI----SYLNMIQVLVNLKDLPGAEKCFKEWES----GCATY-DIRV 336 (490)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~ 336 (490)
+..+...|...|++++|.+.+..+....... +.. +.+.+...+...|+.+.+..++..... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666777777777777776655431111 111 122223333456777777777776542 22222 2456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc--CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-C-
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRR--GAD--P-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-S- 409 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~- 409 (490)
+..+...|...|++++|..+++++... +.. + ....+..++..|...|++++|..++++.......- ..| .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~ 214 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI---YCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC---CCchHH
Confidence 777888899999999999999887652 111 1 13467788889999999999999998877652100 012 1
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 410 -SETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 410 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
...+..+...+...|++++|...|.++.+
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566777778889999999988877765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.4e-05 Score=72.22 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcC----CC-CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGC----AT-YDIRVTNVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
+..+...+...|++++|..++..+...- .. ....++..++..|...|++++|..+++...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3444455555555555555555443210 00 012244444555555555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-05 Score=60.90 Aligned_cols=99 Identities=11% Similarity=-0.044 Sum_probs=58.7
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...++....... .+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 3455555566666666666666666666654 444555666666666666666666666666655432 2445555566
Q ss_pred HHHHhcCChhHHHHHHHHHHHh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~ 293 (490)
.++...|++++|...|+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666655543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-06 Score=62.30 Aligned_cols=96 Identities=10% Similarity=-0.037 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
+..+...+.+.|++++|...|+...+..+. +...|..+..++...|++++|+..|++..+.... +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 445556667777777777777777766554 6667777777777777777777777777775332 45566667777777
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 011226 382 NGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~ 399 (490)
.|++++|+..+++.++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=63.93 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRR--------GA---------DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
.+......+.+.|++++|...|.+.++. .. +.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555566666666666555542 00 113356777888889999999999999999988
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HhHHHHHHHH
Q 011226 399 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV-EVFEPLIRTY 455 (490)
Q Consensus 399 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 455 (490)
.. .+...|..+..++...|++++|...|+++++..| .+. .+...+..+.
T Consensus 93 ~p-------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 93 EE-------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP-AAASVVAREMKIVT 142 (162)
T ss_dssp ST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHH
T ss_pred CC-------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 61 3478888999999999999999999999999987 555 4444444333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.31 E-value=8.1e-06 Score=76.90 Aligned_cols=122 Identities=12% Similarity=0.049 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--------------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
...+..+...|.+.|++++|...|++.++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555666667777777777777777766322211 4678888889999999999999999999986
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcH
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP 463 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 463 (490)
. .+...|..+..+|...|++++|...|+++++..| .+..++..+..++...|+..+
T Consensus 348 p-------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 348 S-------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp T-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred C-------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 1 4588899999999999999999999999999998 788899999999988887433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-05 Score=58.30 Aligned_cols=93 Identities=11% Similarity=-0.017 Sum_probs=50.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 011226 305 MIQVLVNLKDLPGAEKCFKEWESGCATYDI---RVTNVMIGAYAKEGRLENAEELKERARRRGADPN---AKTWEIFSDY 378 (490)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~ 378 (490)
+...+...|++++|...|+.+.+..+. +. ..+..+..++...|++++|...|+.+.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 444455555666666655555544332 22 34445555566666666666666666554221 1 3445555556
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 011226 379 YLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+...|++++|...|+++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 666666666666666666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=8e-05 Score=71.82 Aligned_cols=171 Identities=8% Similarity=-0.094 Sum_probs=134.7
Q ss_pred hhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-
Q 011226 280 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD----------LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG- 348 (490)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 348 (490)
.++|++.++.+...++. +...|+.--.++...|+ ++++...++.+.+..++ +..+|+.-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 45778888888776553 33445544445555555 78899999998888777 8888888777788888
Q ss_pred -ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc---
Q 011226 349 -RLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE--- 423 (490)
Q Consensus 349 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 423 (490)
+++++++.++++.+.+.. +...|+.-...+.+.| .++++++.++++++... -+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-------~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-------SNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-------CCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-------CCccHHHHHHHHHHhhccc
Confidence 669999999999987655 7788888777788888 88999999999988862 4678888777776663
Q ss_pred -----------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCC
Q 011226 424 -----------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 424 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (490)
+.++++.+.+++++...| .|..+|+.+...+.+.++.
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCc
Confidence 557999999999999999 8999999999888887773
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-05 Score=61.32 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 443 (490)
+...+..+...+...|++++|++.|++..+.. |+ ...+..+..++...|++++|...++++.+..+ .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-G 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-c
Confidence 56678888889999999999999999999887 66 67888899999999999999999999999988 7
Q ss_pred CHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHH-HHHHHH
Q 011226 444 GVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEA-SKKLLE 485 (490)
Q Consensus 444 ~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~-~~~~l~ 485 (490)
+...+..+..+|...|+..+++....+...+.|+.. ....+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 899999999999999997776655555555566644 344443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.5e-06 Score=61.99 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=57.5
Q ss_pred cCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 347 EGRLENAEELKERARRRGA--DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
.|++++|+..|++..+.+. +.+...+..+...|...|++++|+..|+++++... -+...+..+..++...|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-------NHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CchHHHHHHHHHHHHcC
Confidence 4667777777777776431 11234566666677777777777777777777751 23667777777777777
Q ss_pred ChHHHHHHHHHHHHcCC
Q 011226 425 DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~ 441 (490)
++++|...+++++...|
T Consensus 76 ~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETS 92 (117)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 77777777777777665
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-05 Score=63.86 Aligned_cols=110 Identities=12% Similarity=0.011 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCCC----CcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG------RGDGGK----WVP-SSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
...+......+.+.|++++|+..|.+.+..- ..|... ..| +...|..+..+|.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456667788999999999999999998871 000000 012 24678889999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHH
Q 011226 438 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEA 479 (490)
Q Consensus 438 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~ 479 (490)
+.+| .+..+|..+..+|...|++.+++...-+...+.|+..
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9998 8999999999999999998888877777777788866
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=6.2e-06 Score=78.02 Aligned_cols=117 Identities=15% Similarity=0.044 Sum_probs=59.6
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 387 (490)
.+.+.|++++|.+.+++..+..+. +...|..+..+|.+.|++++|...+++..+.... +...|..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 344556666666666665554433 4555555556666666666666666665554221 34455555555556666666
Q ss_pred HHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHH--HHhcCChHHHHHHHH
Q 011226 388 AVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRH--FEQEKDVDGAEGFLE 434 (490)
Q Consensus 388 A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~ 434 (490)
|++.++++++.. |+ ...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666655554 21 2233333333 555555555555555
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-05 Score=74.93 Aligned_cols=118 Identities=11% Similarity=-0.065 Sum_probs=58.7
Q ss_pred HHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHH
Q 011226 167 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE 246 (490)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (490)
.+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|+..+++..+. .+.+...+..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3445555556666665555542 113455555555555666666666666655554 3445555555555555566666
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 011226 247 KAERALKELENRNAHRDLSAYQFLITL--YGQTGNLSEVYRIWR 288 (490)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 288 (490)
+|.+.|++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666555554322 122233333333 455555555555555
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=61.97 Aligned_cols=101 Identities=8% Similarity=-0.061 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADP------NA-----KTWEIFSDYYLRNGDMKLAVDCLEKAIDT------- 398 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 398 (490)
+......+...|++++|...|++.++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3445556666777777777777777642220 22 37888888999999999999999999987
Q ss_pred CCCCCCCCcCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011226 399 GRGDGGKWVPS-SETI----RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE 446 (490)
Q Consensus 399 ~~~~~~~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 446 (490)
. |+ ...| .....++...|++++|+..|++.++..| .|..
T Consensus 94 ~--------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p-~d~~ 137 (159)
T 2hr2_A 94 N--------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE-ERKG 137 (159)
T ss_dssp T--------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HCCS
T ss_pred C--------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHH
Confidence 6 76 6778 8999999999999999999999999766 4433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-05 Score=62.43 Aligned_cols=60 Identities=22% Similarity=0.153 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455555555555555444331110 01 1234444444555555555555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-05 Score=62.62 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-CC----chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC----C-C
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT----Y-D 333 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~ 333 (490)
..++..+...+...|++++|...+++....... ++ ...+..+...+...|++++|...++........ + .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346777888899999999999999987754221 11 136778888999999999999999987543211 1 1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGA-DPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
...+..+...+...|++++|...+++..+... ..+ ...+..+...+...|++++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677888899999999999999999875310 111 245677788889999999999999998765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=72.84 Aligned_cols=117 Identities=13% Similarity=0.053 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc--------------CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRR--------------GAD-PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG 401 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~--------------~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 401 (490)
+..+...+.+.|++++|...|++.++. ... .+...|..+..+|.+.|++++|++.++++++...
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence 444555566666666666666665541 011 1345677788888899999999999999998761
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCC
Q 011226 402 DGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 402 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (490)
.+...+..+..+|...|++++|...|+++++..| .+..++..+..++...++.
T Consensus 305 ------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 305 ------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Confidence 3578888888999999999999999999999888 7888888888888776653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=59.41 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=61.1
Q ss_pred cCCCCcHHHHHHHHHHCCC--CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSI--MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 248 (490)
.|++++|+..|++..+.+. +-+...+..+..++...|++++|+..|++..+. .|.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 5677788888887776531 223456667777788888888888888888876 566677777788888888888888
Q ss_pred HHHHHHHHHcc
Q 011226 249 ERALKELENRN 259 (490)
Q Consensus 249 ~~~~~~~~~~~ 259 (490)
...+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888776643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=5.4e-05 Score=71.26 Aligned_cols=121 Identities=8% Similarity=0.013 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRD--------------LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN 296 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (490)
.+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.....+.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444455555555555555555555544221110 234444444555555555555555555444332
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 011226 297 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 353 (490)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (490)
+...|..+..+|...|++++|...|+...+..+. +...+..+..++...++.+++
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555554444332 334444444444444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=61.48 Aligned_cols=104 Identities=10% Similarity=-0.052 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCCCCcCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG-DGGKWVPSS-----ETIRTFMRHFEQEKDVDGAEGFLEILKKA----- 439 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 439 (490)
.+......+.+.|++++|+..|++.++.... |... ..+. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4455666788999999999999999998721 0000 0022 38999999999999999999999999999
Q ss_pred --CCCCCHHhH----HHHHHHHHhcCCCcHHHHHHHhhCCCCC
Q 011226 440 --VDDLGVEVF----EPLIRTYAAAGRTSPVMLRRLKMEKVEV 476 (490)
Q Consensus 440 --~~~~~~~~~----~~l~~~~~~~g~~~~~~~~~m~~~~~~p 476 (490)
+| .+...| .....++...|++.+++...-+...+.|
T Consensus 92 e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 92 ELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp CTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88 788999 9999999999998888765554443333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.06 E-value=6.8e-05 Score=52.28 Aligned_cols=83 Identities=18% Similarity=0.264 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
...+..+...+...|++++|+..+++.++... .+...+..+..++...|++++|...++++.+..| .+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHH
Confidence 45677788889999999999999999998861 3578889999999999999999999999999988 788999
Q ss_pred HHHHHHHHhcC
Q 011226 449 EPLIRTYAAAG 459 (490)
Q Consensus 449 ~~l~~~~~~~g 459 (490)
..+..++...|
T Consensus 81 ~~l~~~~~~~g 91 (91)
T 1na3_A 81 QNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99988887654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.04 E-value=5.4e-05 Score=68.93 Aligned_cols=138 Identities=9% Similarity=-0.010 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 011226 265 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 344 (490)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (490)
..+..+...+.+.|++++|+..|++..+.... . ..... ........+ .+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~----------~~~~~-------~~~~~~~~~-~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--S----------RAAAE-------DADGAKLQP-VALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--H----------HHHSC-------HHHHGGGHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--C----------ccccC-------hHHHHHHHH-HHHHHHHHHHHHH
Confidence 45666777777778888888777776542100 0 00000 011111111 1456677778888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhc
Q 011226 345 AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQE 423 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 423 (490)
.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|+++++.. | +...+..+..++...
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH
Confidence 888888888888888887532 256677777788888888888888888888876 4 466666666677766
Q ss_pred CChHHHHH
Q 011226 424 KDVDGAEG 431 (490)
Q Consensus 424 g~~~~a~~ 431 (490)
++.+++.+
T Consensus 355 ~~~~~a~k 362 (370)
T 1ihg_A 355 KAQKDKEK 362 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-05 Score=71.12 Aligned_cols=98 Identities=7% Similarity=-0.052 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (490)
.|..+..+|.+.|++++|+..+++.++.. ..+...|..+..+|...|++++|...|+++++..| .+..++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~ 303 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRE 303 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence 77888889999999999999999999986 13588999999999999999999999999999888 67788887
Q ss_pred HHHHHHhcCC---CcHHHHHHHhhCCCCCCH
Q 011226 451 LIRTYAAAGR---TSPVMLRRLKMEKVEVSE 478 (490)
Q Consensus 451 l~~~~~~~g~---~~~~~~~~m~~~~~~p~~ 478 (490)
|......... .+..++..|. +..|+.
T Consensus 304 L~~l~~~~~~~~~~a~~~~~~~l--~~~p~~ 332 (338)
T 2if4_A 304 LRALAEQEKALYQKQKEMYKGIF--KGKDEG 332 (338)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCCCC
Confidence 7776544433 3334454443 334543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.6e-05 Score=55.56 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG--- 444 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 444 (490)
+...+..+...+...|++++|++.|++.++... .+...+..+..++...|++++|...++++++..| .+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHH
Confidence 455677778888889999999999999988861 3578888888899999999999999999998887 55
Q ss_pred ---HHhHHHHHHHHHhcCCCcH
Q 011226 445 ---VEVFEPLIRTYAAAGRTSP 463 (490)
Q Consensus 445 ---~~~~~~l~~~~~~~g~~~~ 463 (490)
..++..+..++...|+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHhh
Confidence 6677777777777776433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.7e-05 Score=54.92 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEG 431 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 431 (490)
.|...|++..+... .+...+..+...+...|++++|+..|++.++... .+...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-------TYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555422 2445555666666666666666666666666541 235566666666666666666666
Q ss_pred HHHHHHHcC
Q 011226 432 FLEILKKAV 440 (490)
Q Consensus 432 ~~~~~~~~~ 440 (490)
.|+++.+..
T Consensus 75 ~~~~al~~~ 83 (115)
T 2kat_A 75 AWESGLAAA 83 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.001 Score=64.12 Aligned_cols=173 Identities=8% Similarity=-0.070 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL----------FEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
.++|++.++.+... .|.+..+|+.--.++...|+ ++++++.++.+.+... -+..+|+.-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 34667777777775 56666667666666666655 7777777777777554 35666766666666777
Q ss_pred --ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------
Q 011226 279 --NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK-DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-------- 347 (490)
Q Consensus 279 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 347 (490)
+++++++.++++.+..+. +...|+.-...+.+.| .++++.+.+..+.+..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 557788888877776654 5566666666666667 677777777777776665 667777666665552
Q ss_pred ------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011226 348 ------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 348 ------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 387 (490)
+.++++.+.++.+....+. |...|...-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999998886443 66788877777777666433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-05 Score=69.67 Aligned_cols=149 Identities=11% Similarity=0.011 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 011226 229 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 308 (490)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (490)
...+..+...+.+.|++++|...|++..... |+... +...++..++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4556667777778888888888888876632 33221 122233333322211 1366778888
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHhcCCHH
Q 011226 309 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDY-YLRNGDMK 386 (490)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 386 (490)
+.+.|++++|...++...+..+. +...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999888877654 6778888888899999999999999888764 333 3333333333 23445667
Q ss_pred HHHHHHHHHHhcC
Q 011226 387 LAVDCLEKAIDTG 399 (490)
Q Consensus 387 ~A~~~~~~~~~~~ 399 (490)
++...|..+....
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 7778888877665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=6.6e-05 Score=57.79 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=67.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCCCCcCC-HHHHH
Q 011226 346 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD----------MKLAVDCLEKAIDTGRGDGGKWVPS-SETIR 414 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~ 414 (490)
+.+.+++|.+.++...+.... +...|..+..++...++ +++|+..|++.++.. |+ ...|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--------P~~~~A~~ 84 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--------PKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------cCcHHHHH
Confidence 445567777777777765332 55666666666666554 569999999999997 65 78999
Q ss_pred HHHHHHHhcC-----------ChHHHHHHHHHHHHcCC
Q 011226 415 TFMRHFEQEK-----------DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 415 ~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~ 441 (490)
.+..+|.+.| ++++|...|+++++.+|
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 9999998875 89999999999999997
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=2.4e-05 Score=60.25 Aligned_cols=102 Identities=6% Similarity=-0.149 Sum_probs=86.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCCCHHhHH
Q 011226 380 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV----------DGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
.+.+.+++|++.+++.++... .+...|..+..++...+++ ++|+..|+++++.+| .+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~ 84 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHH
Confidence 355678999999999999971 3588898899999888765 599999999999999 8999999
Q ss_pred HHHHHHHhcC-----------CCcHHHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 450 PLIRTYAAAG-----------RTSPVMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 450 ~l~~~~~~~g-----------~~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
.+..+|...| ++.+++....++..+.|+...+..-.+.+.
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999875 677888888888899999988877666654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00085 Score=51.13 Aligned_cols=111 Identities=12% Similarity=0.002 Sum_probs=71.6
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 011226 314 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAV 389 (490)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 389 (490)
+.++|.+.|+...+.+.. + .. |...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 456666666666665522 2 22 5555556666666777777776653 55566666666665 66777777
Q ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 011226 390 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 441 (490)
++|++..+.| ++..+..|...|.. .+++++|...|++..+.|.
T Consensus 82 ~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777777664 34556666666666 6777777777777777664
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00034 Score=51.33 Aligned_cols=80 Identities=11% Similarity=-0.023 Sum_probs=57.4
Q ss_pred CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 175 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 254 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 254 (490)
+.|+..|++..+.. +.+...+..+..++...|++++|+..|++..+. .+.+...|..+..+|...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45667777776643 235566777777777888888888888887776 456667777777788888888888887777
Q ss_pred HHH
Q 011226 255 LEN 257 (490)
Q Consensus 255 ~~~ 257 (490)
...
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=52.72 Aligned_cols=93 Identities=9% Similarity=-0.000 Sum_probs=66.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC---
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--- 409 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~--- 409 (490)
+...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|++.+++.++.. |+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--------STAEH 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--------SSTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCccH
Confidence 445667777788888888888888888887532 256677777788888888888888888888776 43
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHH
Q 011226 410 ----SETIRTFMRHFEQEKDVDGAEGFLE 434 (490)
Q Consensus 410 ----~~~~~~l~~~~~~~g~~~~a~~~~~ 434 (490)
...+..+..++...|+.+.|...++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4555666666666666666554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0006 Score=52.00 Aligned_cols=111 Identities=12% Similarity=-0.051 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCChhHH
Q 011226 137 LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGA 212 (490)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a 212 (490)
+++++|++.|++..+.|. ++ .. |...|...+.+++|.++|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345666666666666552 22 22 4444444445555666666665554 44555555555555 5566666
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcc
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRN 259 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 259 (490)
...|++..+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665543 34445555555555 556666666666655543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00037 Score=65.55 Aligned_cols=127 Identities=12% Similarity=0.003 Sum_probs=92.3
Q ss_pred HHHhcCChhhHHHHHHHHHhc-----CCC-C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCC-CC-HHHHH
Q 011226 308 VLVNLKDLPGAEKCFKEWESG-----CAT-Y-DIRVTNVMIGAYAKEGRLENAEELKERARR-----RGAD-PN-AKTWE 373 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~-p~-~~~~~ 373 (490)
.+...|++++|..++++..+. |.. | ...+++.|...|...|++++|..++++.++ .|.. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455678888888888776431 211 1 235678888999999999999999988764 2221 22 24678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 374 IFSDYYLRNGDMKLAVDCLEKAIDT-----GRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
.+...|...|++++|+.++++.++. |. -.|+ ..+...+..++...+.+++|+.++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~-----~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGP-----SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999988765 41 1132 344566667788899999999999998763
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00084 Score=46.48 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|++++|...+++..+. .+.+...+..+..++.+.|++++|...+++...... .+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 34445555556666666666666666554 344555555566666666666666666665555322 233344444433
Q ss_pred H
Q 011226 274 Y 274 (490)
Q Consensus 274 ~ 274 (490)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00036 Score=49.75 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHH
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-LGVE 446 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ 446 (490)
+...+..+...|...|++++|+..|+++++... .+...|..+..+|...|++++|...+++.++..+. ++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-------DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 566788888899999999999999999999871 34778889999999999999999999999876432 4666
Q ss_pred hHHHHHHHHHhcCC
Q 011226 447 VFEPLIRTYAAAGR 460 (490)
Q Consensus 447 ~~~~l~~~~~~~g~ 460 (490)
....+...+.+.+.
T Consensus 79 ~~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 79 DLSELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccc
Confidence 66666666655544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00014 Score=68.43 Aligned_cols=99 Identities=8% Similarity=-0.047 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---ccCCCC-
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKR-----DGRVAAD-WTTFSNLASIYVEAGLFEKAERALKELEN---RNAHRD- 263 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~- 263 (490)
.+++.|..+|...|++++|..++++... .|...|+ ..+++.|...|...|++++|..++++... .-+.|+
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455566666666666666665555443 1222222 33456666666666666666666665533 111122
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 264 ---LSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 264 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
..+.+.+-.++...+.+.+|..+|..+++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334455555566666666666666654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00098 Score=47.41 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=42.3
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 257 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 257 (490)
+...+..+..++...|++++|+..|++..+. .+.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666666677777777777777777665 455566666677777777777777777666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0065 Score=53.89 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 367 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 367 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+...|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.++++...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 355566655555555677777777777777765 6666666666667777777777777777777664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0091 Score=52.99 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=61.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH
Q 011226 331 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS 410 (490)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~ 410 (490)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.... |..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--------P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--------PGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------CSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCc
Confidence 3477788887777777899999999999999874 787777777888889999999999999999987 777
Q ss_pred HHHH
Q 011226 411 ETIR 414 (490)
Q Consensus 411 ~~~~ 414 (490)
.+|.
T Consensus 344 ~t~~ 347 (372)
T 3ly7_A 344 NTLY 347 (372)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 7654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0029 Score=44.60 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSE-TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
....+...|++++|+..++++++.. | +.. .+..+..++...|++++|...|+++++..| .+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP-DSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHH
Confidence 3456788999999999999999987 5 467 889999999999999999999999999998 666665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0016 Score=46.03 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWT-TFSNLASIYVEAGLFEKAERALKELENRN 259 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 259 (490)
....+...|++++|...|+++.+. .+.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344566677777777777777665 455556 66667777777777777777777766643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0064 Score=43.43 Aligned_cols=83 Identities=12% Similarity=-0.043 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
+...+..+...+.+.|++..|...|+.+.+....+...-.+...++..+..++.+.|+++.|...++++.+..| .+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P-~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHH
Confidence 45556677788888899999999988887752110000124578899999999999999999999999999998 66666
Q ss_pred HHHH
Q 011226 448 FEPL 451 (490)
Q Consensus 448 ~~~l 451 (490)
.+.+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 5544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.014 Score=44.44 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHHHHhcC
Q 011226 350 LENAEELKERARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEK 424 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g 424 (490)
...+.+-|.+..+.|. ++..+...+..++++.+ +.++++.++++..+... | +...+..+.-+|.+.|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-------p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-------KEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-------HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-------ccchHHHHHHHHHHHHHcc
Confidence 3455666666666554 57777777777888877 55688888888887641 3 3556666777788888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 425 DVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
++++|.+.++.+++..| .|..+..
T Consensus 86 ~Y~~A~~y~~~lL~ieP-~n~QA~~ 109 (152)
T 1pc2_A 86 EYEKALKYVRGLLQTEP-QNNQAKE 109 (152)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 88888888888888887 5555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.014 Score=40.51 Aligned_cols=67 Identities=10% Similarity=-0.046 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 368 NAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+...+..+..++...++ .++|..++++.++... -++.....+...+.+.|++++|...|+++++..|
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-------~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-------YNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44555555555543333 5677777777776651 2356666666666777777777777777776665
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0039 Score=57.64 Aligned_cols=98 Identities=10% Similarity=-0.079 Sum_probs=73.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc--C-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHH
Q 011226 341 IGAYAKEGRLENAEELKERARRR--G-ADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SET 412 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~--~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~ 412 (490)
+..+...|++++|..++++..+. . +.|+ ..+++.+...|...|++++|+.+++++++....--+...|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999999999998853 1 2222 24678888999999999999999998876510000002243 567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999876
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0039 Score=57.59 Aligned_cols=93 Identities=11% Similarity=-0.054 Sum_probs=69.8
Q ss_pred hcCChhHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHH
Q 011226 346 KEGRLENAEELKERARRR---GADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFM 417 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~ 417 (490)
..|++++|..++++.++. -+.|+ ..+++.+..+|...|++++|+.++++.++....--+...|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999888752 12233 25788899999999999999999999876510000002244 56789999
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 011226 418 RHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~ 438 (490)
..|...|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999876
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00012 Score=66.30 Aligned_cols=215 Identities=11% Similarity=0.027 Sum_probs=111.3
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCY 133 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 133 (490)
.+..|..+.++..+.++..+|++.|- +. -|+..|..++.+..+.|.+++-...+....+...++.+=+.|+.+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34555566666666666666655442 11 2444566667777777777777777666666444455556667777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC--------------------CCCCH
Q 011226 134 CKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS--------------------IMPDS 193 (490)
Q Consensus 134 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~p~~ 193 (490)
++.++..+-.+++. | ||..-...+.+-|...|.++.|.-+|..+.... ---++
T Consensus 127 Ak~~rL~elEefl~-----~--~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-----G--PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-----C--CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-----C--CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77666544333221 1 455455555555555555555544443321100 01134
Q ss_pred hhHHHHHHHHHHc------------------------------CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC
Q 011226 194 YTYNVWMRALAAV------------------------------NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG 243 (490)
Q Consensus 194 ~~~~~l~~~~~~~------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (490)
.||..+-.+|... |.+++-+.+++..... .......|+-|.-.|++-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHSS-
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHhc-
Confidence 4555555555554 4455555555554432 345556666666666654
Q ss_pred CHHHHHHHHHHHHHc-cCC------CCHHHHHHHHHHHHhcCChhHHH
Q 011226 244 LFEKAERALKELENR-NAH------RDLSAYQFLITLYGQTGNLSEVY 284 (490)
Q Consensus 244 ~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 284 (490)
++++..+.++....+ +++ -....|.-++-.|..-.+++.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 445544444332211 110 12344666666666666666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.025 Score=57.44 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=52.3
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcC
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKEL 137 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 137 (490)
+..+++.+.+.|.+++|+++.+. . ..-.......|+++.|.++.+.+. +...|..+...+.+.+
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDES----AEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcC
Confidence 34555555555666655554421 1 111334455666666666665553 4566666666666667
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHH
Q 011226 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAI 180 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 180 (490)
+++.|.+.|..+.+ |..+...+...++.+...++
T Consensus 696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 76666666666543 33444444444444443333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.014 Score=40.48 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=41.4
Q ss_pred ChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 333 DIRVTNVMIGAYAKEGR---LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|+..+..+..++...++ .++|..++++..+.+.. +......+...+.+.|++++|+..|+++++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55556666666654433 56777777777765332 44555556666677777777777777777665
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.044 Score=42.78 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=54.7
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCc
Q 011226 97 LDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEK 176 (490)
Q Consensus 97 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (490)
++.....|+++.|.++.+.+. +...|..|.......|+++-|.+.|....+ +..+.-.|.-.|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344455566666666655552 455666666666666666666666655443 4444444445555544
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 177 IPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 177 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
..++-+.....| -++....++.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444433333332 134444455556666666666533
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.066 Score=54.37 Aligned_cols=151 Identities=14% Similarity=0.049 Sum_probs=80.7
Q ss_pred hccCCchHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 011226 66 RDRKLYYPALK-LSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEA 144 (490)
Q Consensus 66 ~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 144 (490)
...+++++|.+ ++.. + ++......++..+.+.|..+.|.++.+.-. .-.......|+++.|.+
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~----------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQD----------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH----------HHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCcc----------hheehhhhcCCHHHHHH
Confidence 44667777665 4311 1 112223566666677777777776653211 11223455677777777
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 011226 145 LLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGR 224 (490)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 224 (490)
+.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+.....|
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~- 737 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG- 737 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 65332 3456777777777777777777777776532 3344444555566555555544444443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKE 254 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 254 (490)
-++.-..+|.+.|++++|.+++.+
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 112223334445555555544433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.22 Score=38.84 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=97.2
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKA 142 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 142 (490)
....+.|+++.|.++.+.+ .+...|..+.+.....|+++-|...|..... +..+.-.|.-.|+.+.-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHH
Confidence 3445789999999998876 3677899999999999999999999999875 56677777888999888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 143 EALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
.++-+.....|- ++.....+...|+++++.++|.+. |--|.. .-.....|..+.|.++.+++
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 877777666552 677777788889999999998644 222221 11223356677777777765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.019 Score=53.14 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
+++.++..|...|++++|..++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444455555555555544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0077 Score=55.62 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=55.1
Q ss_pred cCChhHHHHHHHHHHHC-----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---cCC---CC-HHHHHHHHH
Q 011226 206 VNDISGAERVIEEMKRD-----GRVAA-DWTTFSNLASIYVEAGLFEKAERALKELENR---NAH---RD-LSAYQFLIT 272 (490)
Q Consensus 206 ~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~-~~~~~~l~~ 272 (490)
.|++++|+.++++..+. |...| ...+++.|...|...|++++|..++++...- -.. |+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777888877776552 21122 2355777788888888888888877776541 111 22 355677777
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 011226 273 LYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~ 291 (490)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.1 Score=39.11 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=43.0
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
.+|.++|.++|+.+.+.+-.. ..+|....+.-.++|++..|.+++...+..+..|
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 478888898888887654443 6777777777788899999999999988876664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.22 Score=36.56 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=77.0
Q ss_pred CCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHH
Q 011226 104 QGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQE 183 (490)
Q Consensus 104 g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 183 (490)
|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-.. -|.. ..|+...+...+-.
T Consensus 21 G~v~qGveii~k~~~s-sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~C~~~ 86 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKS-STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVECGVI 86 (172)
T ss_dssp TCHHHHHHHHHHHHHH-SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCC-CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHHHHHH
Confidence 5555555555544431 13334555554444555555555555554332 1211 12222222222221
Q ss_pred HHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 184 MKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 184 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
+ | .+...+...+......|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.|.+
T Consensus 87 ~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 87 N---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp T---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred h---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 1 1 13444555667777778888777777776553 6777777778888888888888888888888777763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.091 Score=38.33 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=68.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHH
Q 011226 345 AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL---AVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRH 419 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~ 419 (490)
.....+..+.+-|......|. |+..+-..+..++++..+... ++.++++..+.+. | .......|.-+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-------p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-------KEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-------cchHHHHHHHHHHH
Confidence 333445566666666666554 677777777888888877665 8888888887651 3 34555667778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 420 FEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
+.+.|+++.|.+.++.+++..| .|..+..
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~eP-~n~QA~~ 112 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQTEP-QNNQAKE 112 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 8999999999999999999988 6655543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.1 Score=39.17 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=79.4
Q ss_pred ChhhHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHHhcC
Q 011226 333 DIRVTNVMIGAYAKEGRL------ENAEELKERARRRGADPNAK-TWEIFSD------YYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|..+|-..+...-+.|+. +..+++|++.... ++|+.. .|...|. .+...++.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666666666666666 6777778777764 444431 1111111 1234478999999999998764
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
. ++ ..+|......-.+.|+...|.+++.+.+..++ .+.......+.-+-.
T Consensus 91 K----kF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~-k~~~~le~a~~nl~~ 140 (161)
T 4h7y_A 91 K----KF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGA-VPLEMLEIALRNLNL 140 (161)
T ss_dssp T----TB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BCHHHHHHHHHHHHT
T ss_pred H----HH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CcHHHHHHHHHhhhc
Confidence 2 14 78888888888899999999999999999998 556666666655543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.047 Score=46.43 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHH
Q 011226 350 LENAEELKERARRRGADPN---AKTWEIFSDYYLR-----NGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRH 419 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~ 419 (490)
...|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++.++.. | +..++....+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--------P~~~id~~v~YA~~ 248 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--------SAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------CTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------CCCCchHHHHHHHH
Confidence 45677788888875 455 4578888888888 499999999999999998 6 37888888888
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCC--CCHHhHHHHH
Q 011226 420 FEQE-KDVDGAEGFLEILKKAVDD--LGVEVFEPLI 452 (490)
Q Consensus 420 ~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 452 (490)
++.. |+.+++.+.+++.+...+. |+....+.+.
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 8885 9999999999999998886 6655555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.046 Score=41.51 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 011226 318 AEKCFKEWESGCATYDIRVTNVMIGAYAKEG---RLENAEELKERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVDCL 392 (490)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (490)
+.+-|.+....+. ++..+...+.-++++.+ ++++++.+|+...+.+ .| +...+-.+.-++.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444333 35555555555666655 4446666666666543 12 2233344445556666666666666
Q ss_pred HHHHhcC
Q 011226 393 EKAIDTG 399 (490)
Q Consensus 393 ~~~~~~~ 399 (490)
+.+++..
T Consensus 95 ~~lL~ie 101 (152)
T 1pc2_A 95 RGLLQTE 101 (152)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 6666655
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.092 Score=44.69 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc-CC
Q 011226 209 ISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEA-----GLFEKAERALKELENRNAHRDLSAYQFLITLYGQT-GN 279 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 279 (490)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++....+..-+..++....+.++.. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 45677777777774 344 55777888888773 88888888888887755433466777777777774 88
Q ss_pred hhHHHHHHHHHHHhCCC--CCch
Q 011226 280 LSEVYRIWRSLRLAFPN--TANI 300 (490)
Q Consensus 280 ~~~a~~~~~~~~~~~~~--~~~~ 300 (490)
.+++.+.+++.....+. |+..
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHHHcCCCCCCCChh
Confidence 88888888888776665 5443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.11 Score=36.78 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=41.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRG------ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+..-+..|...+...|+++.|...|+...+.- -.+....+..+..++.+.|+++.|+.+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 33444556666666667777766666665421 11234556666667777777777777777777665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.83 Score=33.57 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
......+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444455555556666666665554331 34455555555566666666666666666666555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.80 E-value=3.9 Score=41.34 Aligned_cols=314 Identities=8% Similarity=-0.042 Sum_probs=169.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchH--HHHHHHHHhcCCCCcHHHHHHHHHHCCC--C-----CCHhhHHHHH
Q 011226 130 LNCYCKELMTEKAEALLEKMKELNLGFSSMPF--NSLMTLYAKTGHPEKIPAIIQEMKASSI--M-----PDSYTYNVWM 200 (490)
Q Consensus 130 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----p~~~~~~~l~ 200 (490)
--+....|+.++++.++......+-..+..+- ..+.-+.+..|..+++..++.......- . +....-.++.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 34567788988888888765542101122222 2333445566666678887776654321 0 1111112222
Q ss_pred HHHHHcCC-hhHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH--HH
Q 011226 201 RALAAVND-ISGAERVIEEMKRDGRVAADWT--TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL--YG 275 (490)
Q Consensus 201 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 275 (490)
-+..-.|. -+++...+..+.... .+... .-.++...+.-.|+.+....++..+.+. .+......+.-+ +.
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll 535 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhh
Confidence 22222332 245566666665542 11111 1223444455678877777887776652 233333333333 44
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhH--HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISY--LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 353 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (490)
..|+.+.+..+.+.+... ..|....- .++.-+|+..|+.....+++..+.+.. ..++.-...+.-++...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHH
Confidence 678999888888887753 22222211 234456778889888888888887642 22344333444455567887878
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH--hcCChH---
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDM-KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE--QEKDVD--- 427 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~--- 427 (490)
..+++.+.+.+ .|....-..+.-+....|.. .++++.+..+... ++..+-...+.++. -.|..+
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---------~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---------PVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---------CCHHHHHHHHHHHHHHhcCCccccc
Confidence 88887666542 34444334444455555554 6788888888754 55544433333333 333222
Q ss_pred -HHHHHHHH---HHHc-CCCCCHHhHHHHHHHHHhcCC
Q 011226 428 -GAEGFLEI---LKKA-VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 428 -~a~~~~~~---~~~~-~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+...++++ .... ...++...-..+..+....|.
T Consensus 684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 23333333 3322 222556777778888877776
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.41 E-value=4.9 Score=40.71 Aligned_cols=265 Identities=14% Similarity=0.037 Sum_probs=127.5
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHccC-------CCCHHHHHHHHHHH
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWT--TFSNLASIYVEAGLFEKAERALKELENRNA-------HRDLSAYQFLITLY 274 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 274 (490)
...|+.++++.++......+ ...+.. .=..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~-~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGS-RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTS-CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhcccc-CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34455566655554443311 012222 223344445556666677777766554321 01111112222222
Q ss_pred HhcCC-hhHHHHHHHHHHHhCCCCCchhHH--HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 011226 275 GQTGN-LSEVYRIWRSLRLAFPNTANISYL--NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 275 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
+-.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+.+.... +..-...+.-++...|+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhhhCCChH
Confidence 22232 2455566655554221 1111112 2333445667777777777776653211 2222233333445678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHH
Q 011226 352 NAEELKERARRRGADPNAKTWE--IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 429 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 429 (490)
.+..+.+.+... ..|....-. .+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+
T Consensus 542 ~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-------~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 542 LADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-------NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp GGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-------cHHHHHHHHHHHHhhccCCHHHH
Confidence 888888887763 122222111 23345667788776666888877652 12233333333345556777767
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 430 EGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
.++++.+.+.+- |.+.--..+.-+....|.....+.+.+...--.+|..+
T Consensus 614 ~rlv~~L~~~~d-~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 614 PRIVQLLSKSHN-AHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp HHHTTTGGGCSC-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 777765555443 55555555555555556644433333333323344443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.28 Score=48.31 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=44.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHH
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML 466 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 466 (490)
.+.|...|+++-|+.+-+++...-| .+..+|..|..+|...|++..|++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHH
Confidence 4567789999999999999999999 999999999999999999877774
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.00045 Score=62.62 Aligned_cols=245 Identities=13% Similarity=0.067 Sum_probs=160.5
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 011226 90 VSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYA 169 (490)
Q Consensus 90 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 169 (490)
+..|..+..+..+.+.+.+|++-|-+.. |+..|..+|....+.|.+++-++.+...++.. .++..=+.|+-+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 3457778888888888887776664443 56678888999999999999888887666543 45566678999999
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCC-------------------CCCCCHH
Q 011226 170 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG-------------------RVAADWT 230 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~ 230 (490)
+.++..+..+++. .||..-...+..-|...|.++.|.-+|..+.... +-..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9998877665542 3666666777888888888888777766543321 1244666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 310 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (490)
||..+-.+|...+.+.-|.-.--.+.- .+| -...++..|-..|-+++.+.+++.-... -......|+.|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 788888888888877766554433332 122 2334566677788888888887776532 2345566777777776
Q ss_pred hcCChhhHHHHHHHHHhc-CCC------CChhhHHHHHHHHHhcCChhHHH
Q 011226 311 NLKDLPGAEKCFKEWESG-CAT------YDIRVTNVMIGAYAKEGRLENAE 354 (490)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~~~~~~a~ 354 (490)
+- ++++..+.++..-+. +++ -....|..++-.|.+-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 64 444444444332111 110 03456777777777777777654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.92 E-value=3.9 Score=43.18 Aligned_cols=210 Identities=13% Similarity=0.004 Sum_probs=102.3
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC
Q 011226 95 IHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP 174 (490)
Q Consensus 95 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (490)
.++..+...+..+.+.++...... +...--.+..++...|++++|.+.|++... |+..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~------------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF------------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC-------------
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh-------------
Confidence 345556666777777666655544 444444455667777888888777765422 111111000
Q ss_pred CcHHHHHHHHHHCC--CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 011226 175 EKIPAIIQEMKASS--IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 175 ~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A 248 (490)
. ...-+..+.... ...-..-|..++..+.+.+.++.+.++-...++.. .+.+. ..|..+.+.+...|++++|
T Consensus 880 ~-~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 880 A-VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp S-SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred h-hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0 000011111110 01112335556666666677766666666555542 11111 1355666667777777777
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHH-Hh-CCCCCchhHHHHHHHHHhcCC
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYGQTGN------------LSEVYRIWRSLR-LA-FPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~ 314 (490)
...+-.+..... -......|+..++..|. .+++.+++..-- .. .+...+.-|..|-.-+...|+
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~d 1035 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQN 1035 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCC
Confidence 777666655433 23345555555554443 344444443321 11 112112234444455566677
Q ss_pred hhhHHH-HHHHH
Q 011226 315 LPGAEK-CFKEW 325 (490)
Q Consensus 315 ~~~a~~-~~~~~ 325 (490)
+.+|-. +|+.+
T Consensus 1036 yR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 1036 YRDAAAIIYEKL 1047 (1139)
T ss_dssp TSCHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 766554 34443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.29 Score=48.23 Aligned_cols=126 Identities=15% Similarity=0.110 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCcchHH--HHHHHHHhcCC-CCcHHHHHHHHHHC------CCCCCH---
Q 011226 127 GSLLNCYCKELM-TEKAEALLEKMKELNLGFSSMPFN--SLMTLYAKTGH-PEKIPAIIQEMKAS------SIMPDS--- 193 (490)
Q Consensus 127 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~p~~--- 193 (490)
..++..+...++ ++.|.++|+++...+ |...++- .++..+...++ --+|.+++.+..+. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444444555 588999999988865 4333332 23332222221 12355555544321 111111
Q ss_pred --------hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 194 --------YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 194 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
.....=.+.+...|+++.|+++-++.... .|.+..+|..|..+|...|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 01122234567789999999999999997 67789999999999999999999999988763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.58 Score=34.11 Aligned_cols=66 Identities=9% Similarity=-0.022 Sum_probs=31.5
Q ss_pred ChhhHHHHHHHHHhcCChhH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 333 DIRVTNVMIGAYAKEGRLEN---AEELKERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+..+-..+.-++.+..+..+ ++.+++.+.+.+ .| .....-.+.-++.+.|++++|.++++.+++..
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 44444444444555444443 555555544432 11 11222334445556666666666666666654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.37 Score=43.78 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH--HHH-----HhhCCCCCCHHHHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM--LRR-----LKMEKVEVSEASKKLL 484 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~--~~~-----m~~~~~~p~~~~~~~l 484 (490)
....++..+...|++++|...++.+....| .+...|..|+.+|.+.|+.++++ ++. ..+.|+.|.+.+..+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345567788899999999999999999999 89999999999999999965554 222 2345999999998877
Q ss_pred HHh
Q 011226 485 EAI 487 (490)
Q Consensus 485 ~~~ 487 (490)
.++
T Consensus 252 ~~i 254 (388)
T 2ff4_A 252 ERI 254 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.26 E-value=0.6 Score=32.10 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
.=+..+-++.+.... ..|++.+..+.+++|.+.+++..|.++|+-++.+-. +...+|..+++-+
T Consensus 26 ~~e~rrglN~l~~~D------lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lqEl 89 (109)
T 1v54_E 26 AWELRKGMNTLVGYD------LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHHHTTSS------BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHHHH
Confidence 335667777777777 779999999999999999999999999999887554 4455677776543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.14 E-value=5.3 Score=36.91 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHC--CCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCCC--HH
Q 011226 162 NSLMTLYAKTGHPEKIPAIIQEMKAS--SIMPD---SYTYNVWMRALAAVNDISGAERVIEEMKR----DGRVAAD--WT 230 (490)
Q Consensus 162 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~--~~ 230 (490)
..|...+...|++.+|.+++..+... |.... ...+...++.|...+++..|..+++++.. .. .+|+ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~ 219 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHH
Confidence 34555666666666666666665432 11111 23445556677777777777777766532 11 1121 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
.+...+..+...+++.+|.+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555666666777777766666554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.05 E-value=1.9 Score=31.59 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 365 ADPNAKTWEIFSDYYLRNGDM---KLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
-.|+..+--.+..++++..+. .+++.+++++.+.+ | ....+..|.-++.+.|+++.|.+..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 445666666666777776654 46788888888776 4 3556666777888888888888888888888
Q ss_pred CCCCCHHh
Q 011226 440 VDDLGVEV 447 (490)
Q Consensus 440 ~~~~~~~~ 447 (490)
.| .|..+
T Consensus 108 eP-~N~QA 114 (134)
T 3o48_A 108 ER-NNKQV 114 (134)
T ss_dssp CT-TCHHH
T ss_pred CC-CCHHH
Confidence 87 55444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.01 E-value=0.5 Score=32.51 Aligned_cols=60 Identities=15% Similarity=0.291 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS 237 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (490)
++.+-++.+-...+.|++....+.+++|.+.+|+..|.++|+.+... +.....+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44555566666677788888888888888888888888888877765 4444445655543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.94 E-value=5.7 Score=34.40 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHH---
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR--- 285 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--- 285 (490)
+++.+.-++.-++.|..-.-...|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHH
Confidence 4444444444444442333334555666667777788887777654221 2233344433333
Q ss_pred -HHHHHHHhCCCCCchhHHHHHHHHHhcCChh-hHHHHHHHHHh----cC--CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011226 286 -IWRSLRLAFPNTANISYLNMIQVLVNLKDLP-GAEKCFKEWES----GC--ATYDIRVTNVMIGAYAKEGRLENAEELK 357 (490)
Q Consensus 286 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (490)
+.+...+.+..++......++..+......+ .=.++++.+.+ .+ ..-++.....+...|.+.|++.+|...|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 2333344455555555555555554422211 12233333321 11 2236677888888888988888888776
Q ss_pred H
Q 011226 358 E 358 (490)
Q Consensus 358 ~ 358 (490)
-
T Consensus 158 i 158 (312)
T 2wpv_A 158 M 158 (312)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=5.1 Score=36.24 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----ccCCCCHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN-----RNAHRDLSAYQF 269 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 269 (490)
...++.++...|+.+++...++.+... .|.+...+..+|.++.+.|+..+|++.|+...+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 445777888999999999999999887 788888999999999999999999999988754 488888765443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.03 E-value=1.4 Score=33.86 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 409 SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+.+.-..+..+|.+.|++++|+.+++.+.... .++.+-..|.+.|
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakLy 165 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHHh
Confidence 34555567789999999999999998765443 3455555555443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.89 E-value=3.9 Score=30.44 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 366 DPNAKTWEIFSDYYLRNGDM---KLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
.|+..+--.+..++++..+. .+++.+++++.+.+ | .......|.-++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--------~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--------CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--------ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 46666666677777777654 46888888888766 4 24455566678888888888888888888888
Q ss_pred CCCCHHhH
Q 011226 441 DDLGVEVF 448 (490)
Q Consensus 441 ~~~~~~~~ 448 (490)
| .|..+-
T Consensus 108 P-~n~QA~ 114 (144)
T 1y8m_A 108 R-NNKQVG 114 (144)
T ss_dssp C-CCHHHH
T ss_pred C-CcHHHH
Confidence 7 554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.65 E-value=1.5 Score=32.20 Aligned_cols=86 Identities=12% Similarity=-0.048 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHh-cCCCCHHhHHHHHHHHhccCCc---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHH
Q 011226 38 SVRQQLNQFLKS-KKRVFKWEVGDTLKKLRDRKLY---YPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYF 113 (490)
Q Consensus 38 ~~~~~l~~~~~~-~~~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 113 (490)
....+=+.+.+. +..++..+-....-++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|+++.|.+..
T Consensus 22 eL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 22 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333455444 6677888888888888877654 578888888876652112334455666778888888888888
Q ss_pred hhcCCCCCCH
Q 011226 114 VDLPETSKNH 123 (490)
Q Consensus 114 ~~~~~~~~~~ 123 (490)
+.+.+..|+.
T Consensus 102 d~lL~~eP~N 111 (134)
T 3o48_A 102 DTLFEHERNN 111 (134)
T ss_dssp HHHHTTCTTC
T ss_pred HHHHhhCCCC
Confidence 8888855553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.95 E-value=1.4 Score=32.22 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q 011226 177 IPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS 237 (490)
Q Consensus 177 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (490)
..+-++.+....+.|++....+.+++|.+.+|+..|.++|+-+... ..+...+|..++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 4445555556677788888888888888888888888888888776 4444555665553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.9 Score=34.85 Aligned_cols=62 Identities=15% Similarity=0.037 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHhccCCchHHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHHhhCCHHHHHHHHhhc
Q 011226 55 KWEVGDTLKKLRDRKLYYPALKLSENMEKRG-MNKTV-------SDQAIHLDLVAKVQGIDAAENYFVDL 116 (490)
Q Consensus 55 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 116 (490)
.+.+..-++.+...+.++.|+-+.+.+.... ..|+. .++..+.+++...|++..|...|++.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4455666666777777777777666652221 12221 24455567777778888777777764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.88 E-value=4.5 Score=29.62 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+..+-++.+.... +.|++.+..+.+++|.+.+++..|.++|+-++.+-. +...+|..+++-+
T Consensus 71 ElrrglN~l~~~D------lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~-~~~~iY~y~lqEl 132 (152)
T 2y69_E 71 ELRKGMNTLVGYD------LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHTTSS------BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-CchhhHHHHHHHH
Confidence 4556666666666 779999999999999999999999999999887554 4566677776543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.81 E-value=12 Score=34.50 Aligned_cols=152 Identities=8% Similarity=0.071 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHh--cCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCH--HH
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWES--GCATYD---IRVTNVMIGAYAKEGRLENAEELKERARR----RGADPNA--KT 371 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~--~~ 371 (490)
..|...+...|++.+|.+++..+.. .+.... ...+...++.|...+++..|..++..+.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777788888888888888653 221111 24566677888888899888888887642 1112221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 372 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR----TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 372 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
+...+..+...+++.+|.+.|.++.+... ...+...+. .++.+..-.+....-..++........-++...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~-----~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~ 295 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDA-----IKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLES 295 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----HHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccc-----ccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHH
Confidence 45566677788889888888887765420 112222222 222222222222222222333322222267788
Q ss_pred HHHHHHHHHhcC
Q 011226 448 FEPLIRTYAAAG 459 (490)
Q Consensus 448 ~~~l~~~~~~~g 459 (490)
+..|+++|....
T Consensus 296 ~~~L~k~f~~~~ 307 (445)
T 4b4t_P 296 QESLVKLFTTNE 307 (445)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhch
Confidence 888888886643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.76 E-value=10 Score=39.99 Aligned_cols=178 Identities=11% Similarity=-0.002 Sum_probs=110.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc----C----------------
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG----C---------------- 329 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---------------- 329 (490)
++..+...+..+-+.++..- ...+...-..+..++...|++++|.+.|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555666555543332 1223333345667788899999999988764211 0
Q ss_pred --CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011226 330 --ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG 403 (490)
Q Consensus 330 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 403 (490)
...-...|..++..+-+.+.++.+.++-....+....-+. ..|..+..++...|++++|...+-.+....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~---- 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP---- 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS----
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH----
Confidence 0111235677888888999999999888887764222222 257888899999999999999988876654
Q ss_pred CCCcCCHHHHHHHHHHHHhcCChHHH------------HHHHHH-HHHc-CCCCCHHhHHHHHHHHHhcCC
Q 011226 404 GKWVPSSETIRTFMRHFEQEKDVDGA------------EGFLEI-LKKA-VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 404 ~~~~p~~~~~~~l~~~~~~~g~~~~a------------~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~ 460 (490)
--...+..|+..++..|..+.- .+++.. +... .+...+.-|..|..-+...|+
T Consensus 969 ----~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~d 1035 (1139)
T 4fhn_B 969 ----LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQN 1035 (1139)
T ss_dssp ----SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCC
Confidence 3456677777777776655443 333332 2222 221223446666666677777
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.28 E-value=11 Score=33.04 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011226 379 YLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~ 396 (490)
|...++...|..+++...
T Consensus 197 yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 197 YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334455555555554444
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.94 E-value=11 Score=34.49 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=69.7
Q ss_pred chHHHHHHHHHhcCCCCcHHHHHHHHHHC--CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH-
Q 011226 159 MPFNSLMTLYAKTGHPEKIPAIIQEMKAS--SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL- 235 (490)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 235 (490)
.++..+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.++...-...+++...+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46788999999999999999999999765 223334567778899999999999999998876542122333332221
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHH
Q 011226 236 ---ASIYVEAGLFEKAERALKELEN 257 (490)
Q Consensus 236 ---~~~~~~~~~~~~A~~~~~~~~~ 257 (490)
+..+...+++..|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2223346788888888877654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.90 E-value=20 Score=34.62 Aligned_cols=116 Identities=10% Similarity=-0.034 Sum_probs=68.4
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHH----HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 011226 278 GNLSEVYRIWRSLRLAFPNTANISYL----NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 353 (490)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (490)
.+.+.|...|........ .+..... .+.......+...++...+........ +.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 377888888888765432 2332222 222233334434555666665444332 333344455555677899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 397 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 397 (490)
...|+.|..... ....-.--+.+++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 998888765311 1233334455677788999999998888864
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=86.55 E-value=9 Score=32.36 Aligned_cols=22 Identities=18% Similarity=-0.046 Sum_probs=10.1
Q ss_pred hcCChhHHHHHHHHHHHhCCCC
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNT 297 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~ 297 (490)
..++.....++++.+.+.|..+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCS
T ss_pred HccccchHHHHHHHHHHcCCCC
Confidence 3444444444555555554433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.29 E-value=4 Score=34.24 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=42.1
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011226 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 258 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 258 (490)
...+.|++++++.....-++. .|.|...-..|+..+|-.|+|++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 455677888888877777776 6777777778888888888888888887777664
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.23 E-value=14 Score=33.91 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 233 SNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQTGNLSEVYRIWRSL 290 (490)
Q Consensus 233 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (490)
..+...|.+.|++++|.+.|.++...-..+ -...+-..++.+...+++..+...+.++
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344445555555555555555444422111 1233444444555555555555555444
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.32 E-value=14 Score=29.48 Aligned_cols=86 Identities=9% Similarity=0.054 Sum_probs=52.9
Q ss_pred HHHHHHHhhcCCCCCCHhHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCCCcHHHHHHH
Q 011226 107 DAAENYFVDLPETSKNHLTYGSLLNCYCK--ELMTEKAEALLEKMKELNLGFS-SMPFNSLMTLYAKTGHPEKIPAIIQE 183 (490)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 183 (490)
+.+...|.......-|+......+...-. .++...+.++|..|...|+--. +..|......+...|++.+|.++|+.
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555554455566544444432222 4456788888888887766433 34455666667777888888888877
Q ss_pred HHHCCCCCC
Q 011226 184 MKASSIMPD 192 (490)
Q Consensus 184 ~~~~~~~p~ 192 (490)
-++.+-.|-
T Consensus 141 GI~~~A~P~ 149 (202)
T 3esl_A 141 GAENNCRPY 149 (202)
T ss_dssp HHHTTCBSH
T ss_pred HHHcCCccH
Confidence 777766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 490 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 9e-09
Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 4/170 (2%)
Query: 228 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 287
+ NL ++ EA +F++A A + + + L +Y + G + +
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 288 RSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347
R P+ + +Y N+ L + AE C+ N + ++
Sbjct: 261 RRAIELQPHFPD-AYCNLANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLANIKREQ 318
Query: 348 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 397
G +E A L +A + A + + G ++ A+ ++AI
Sbjct: 319 GNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 5e-06
Identities = 41/336 (12%), Positives = 111/336 (33%), Gaps = 19/336 (5%)
Query: 107 DAAENYFVDLPETSKNHL-TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLM 165
+AAE + + L ++ L + + + +++ + N + +++L
Sbjct: 16 EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLG 74
Query: 166 TLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV 225
+Y + G ++ + N+ +AA + + + ++ + +
Sbjct: 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134
Query: 226 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR 285
+ NL + E + A A+ L ++ G +
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA----VAWSNLGCVFNAQGEIWLAIH 190
Query: 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 345
+ PN + +Y+N+ VL + A + S + V + Y
Sbjct: 191 HFEKAVTLDPNFLD-AYINLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVHGNLACVYY 248
Query: 346 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK 405
++G ++ A + RA + ++ G + A DC A+
Sbjct: 249 EQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR-------L 300
Query: 406 WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441
++++ ++ +++ A + + +KA++
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEA---VRLYRKALE 333
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 13/177 (7%)
Query: 107 DAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMT 166
A Y L + + + +G+L Y ++ + + A + EL F + +L
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA-YCNLAN 279
Query: 167 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM-RALAAVNDISGAERVIE---EMKRD 222
+ G + A A + P + +I A R+ E+ +
Sbjct: 280 ALKEKGSVAE--AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
Query: 223 GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN 279
SNLAS+ + G ++A KE + AY + + +
Sbjct: 338 -----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (87), Expect = 0.002
Identities = 33/270 (12%), Positives = 66/270 (24%), Gaps = 49/270 (18%)
Query: 226 AADWTTFSNLASIYVEAGLFEKA----ERALKELENRNAHRDL-SAYQFLITLYGQTGNL 280
AAD A+IY A +A + + + Y + GN
Sbjct: 36 AAD--LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93
Query: 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVN----------LKDLPGAEKCFKEWESGCA 330
+ F + + + K + E + + +
Sbjct: 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153
Query: 331 TYDIRVTNVMIG-AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY------YLRNG 383
+ A +G+ A ++ + + W + + L
Sbjct: 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT 213
Query: 384 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443
D A L++ F E FL+ L AV++
Sbjct: 214 DAVAAARTLQEGQ--------------SEDPNFADSRESN--------FLKSLIDAVNEG 251
Query: 444 GVEVFEPLIRTYAAAGRTSPV---MLRRLK 470
E + + R +L ++K
Sbjct: 252 DSEQLSEHCKEFDNFMRLDKWKITILNKIK 281
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.39 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.35 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.34 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.3 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.29 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.64 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.56 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.53 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.51 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.45 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.4 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.39 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.33 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.18 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.1 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.09 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.08 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.99 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.87 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.87 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.84 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.64 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.53 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.79 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.31 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.3 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.58 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.56 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.12 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.48 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.06 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.59 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.48 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.4 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.8e-24 Score=199.11 Aligned_cols=382 Identities=12% Similarity=0.025 Sum_probs=325.2
Q ss_pred HHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCH
Q 011226 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMT 139 (490)
Q Consensus 61 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~ 139 (490)
+...+.+.|++++|++.++.+.+.. +-+...+..+..++.+.|++++|...|+.+.+ .+.+..+|..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 4566778999999999999998775 34677888889999999999999999999888 445677899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 140 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
++|++.+........ .+...+..........+....+............ ................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 999999999988654 4445555566666677777777777776665533 34455556667777888999999999888
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCc
Q 011226 220 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 299 (490)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 299 (490)
... .+.+...+..+...+...|++++|...+++.....+ -+...+..+...+...|++++|...++......+. +.
T Consensus 162 ~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 237 (388)
T d1w3ba_ 162 IET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred hcc--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence 886 677788888999999999999999999999887543 35678889999999999999999999999887654 56
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011226 300 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 379 (490)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (490)
..+..+...+.+.|++++|...|++..+..+. +..++..+...+...|++++|...++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 67788899999999999999999999887665 77889999999999999999999999998863 44777888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 011226 380 LRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 458 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (490)
...|++++|++.|++.++.. | +..++..+..+|.+.|++++|...|+++++..| .+..+|..|..+|.+.
T Consensus 316 ~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEM 386 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC--------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 99999999999999999876 5 478899999999999999999999999999998 8899999999999988
Q ss_pred CC
Q 011226 459 GR 460 (490)
Q Consensus 459 g~ 460 (490)
|+
T Consensus 387 ~D 388 (388)
T d1w3ba_ 387 QD 388 (388)
T ss_dssp CC
T ss_pred CC
Confidence 85
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1e-21 Score=180.43 Aligned_cols=368 Identities=13% Similarity=0.094 Sum_probs=310.3
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP 174 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (490)
+...+.+.|++++|.+.++++.+ .+-+..++..+...|.+.|++++|...|++..+..+ -+..+|..+...+.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccc
Confidence 45667789999999999999888 444678899999999999999999999999988753 4567889999999999999
Q ss_pred CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 175 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 254 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 254 (490)
++|...+....+.. +.+..............+....+.......... ..................+....+...+..
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccc--ccccccccccccccccccchhhhhHHHHHH
Confidence 99999999998864 334555555666667777777777777777665 455666666777778888999999998888
Q ss_pred HHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 011226 255 LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI 334 (490)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (490)
...... .+...+..+...+...|++++|...++......+. +...+..+...+...|++++|...+......... +.
T Consensus 161 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 237 (388)
T d1w3ba_ 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred hhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence 877543 45677888889999999999999999999887653 5567888999999999999999999998887655 67
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 414 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~ 414 (490)
..+..+...+.+.|++++|...|+++.+.... +...+..+...+...|++++|++.++...... ..+...+.
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~ 309 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-------PTHADSLN 309 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-------Cccchhhh
Confidence 78888999999999999999999999986432 56788889999999999999999999999886 25688899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHH
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEA 479 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~ 479 (490)
.+...+...|++++|...++++++..| .+..++..+..+|.+.|+..+++...-+...+.|+..
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 373 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999988 7899999999999999998888877777778888754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.1e-14 Score=129.39 Aligned_cols=250 Identities=12% Similarity=0.027 Sum_probs=170.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
....+.+.|++++|+..|+++++. .|.+..+|..+..++...|++++|...|++..+..+ -+...+..+..+|...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 344455666666666666666664 455556666666666666666666666666555432 23455555566666666
Q ss_pred ChhHHHHHHHHHHHhCCCCCc--------------hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhHHHHHHH
Q 011226 279 NLSEVYRIWRSLRLAFPNTAN--------------ISYLNMIQVLVNLKDLPGAEKCFKEWESGCA-TYDIRVTNVMIGA 343 (490)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~ 343 (490)
++++|.+.++......+.... ......+..+...+...++...+.......+ ..+..++..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 666666666665543221100 0011112233445567778888887765443 3356778888899
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHh
Q 011226 344 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQ 422 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 422 (490)
+...|++++|...|++....... +...|..+...+...|++++|++.|+++++.. | +...+..+..+|.+
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~ 252 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCIN 252 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh--------hccHHHHHHHHHHHHH
Confidence 99999999999999999886433 57788889999999999999999999999876 4 47889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCC----------CCHHhHHHHHHHHHhcCC
Q 011226 423 EKDVDGAEGFLEILKKAVDD----------LGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~ 460 (490)
.|++++|...|+++++..|. .....|..+-.++...|+
T Consensus 253 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~ 300 (323)
T d1fcha_ 253 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300 (323)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999886541 122356667777777776
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7.4e-14 Score=124.02 Aligned_cols=278 Identities=12% Similarity=-0.040 Sum_probs=170.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 129 LLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 129 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
....+.+.|++++|+..|++.++..+ -+..+|..+..++...|++++|...|.+..+... -+...+..+..++...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 34445566666666666666666542 2345556666666666666666666666555421 134455555556666666
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
+++|.+.++...... +.....+........ ..+.......+..+...+.+.+|...+.
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 666666666665531 111111000000000 0000111112223344566777888888
Q ss_pred HHHHhCCC-CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 289 SLRLAFPN-TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 289 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
......+. .+...+..+...+...|++++|...++......+. +..+|..+...|...|++++|.+.|++..+....
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 87766543 34456777888889999999999999998877665 6788888999999999999999999999886322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---C-CCCcCCHHHHHHHHHHHHhcCChHHHHHH
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD---G-GKWVPSSETIRTFMRHFEQEKDVDGAEGF 432 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 432 (490)
+...|..+..+|.+.|++++|++.|++.++..... . .........|..+-.++...|+.+.+...
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56778889999999999999999999988753100 0 00112234566666677777776655433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=4.5e-10 Score=98.22 Aligned_cols=217 Identities=10% Similarity=0.055 Sum_probs=152.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
..++.+..++.+.+..++|+.+++++++. .|.+...|+....++...| ++++|+..++...+... -+..+|..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhH
Confidence 34555666677777888888888888886 6777777888777777765 47888888888777544 35677777777
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR--- 349 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--- 349 (490)
.+.+.|++++|+..++.+.+..+. +...|..+...+...|++++|.+.++.+.+.++. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 888888888888888888776654 5667777888888888888888888888877665 66677766666666554
Q ss_pred ---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh
Q 011226 350 ---LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 422 (490)
Q Consensus 350 ---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 422 (490)
+++|...+..+.+..+. +...|+.+...+. ....+++.+.++...+.... ..+...+..++..|..
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPS-----HSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTT-----CCCHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCC-----cCCHHHHHHHHHHHHH
Confidence 46788888877775332 5566666655444 34457777777777766521 1345556666666543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=4.4e-10 Score=98.28 Aligned_cols=217 Identities=10% Similarity=0.070 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCCCchhHHHHHH
Q 011226 229 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG-NLSEVYRIWRSLRLAFPNTANISYLNMIQ 307 (490)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 307 (490)
...++.+...+.+.+.+++|++.++++.+..+ -+...|+....++...| ++++|+..++...+..+. +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 45667778888899999999999999998654 35678888888888876 589999999999988765 5778888999
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD--- 384 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 384 (490)
.+.+.|++++|...+..+.+..+. +...|..+...+...|++++|++.++.+++.++. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 999999999999999999998777 8899999999999999999999999999997544 66778777666666554
Q ss_pred ---HHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhc
Q 011226 385 ---MKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL-GVEVFEPLIRTYAAA 458 (490)
Q Consensus 385 ---~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 458 (490)
+++|++.+.++++.. | +...|..+...+.. ...+++...++...+..+.+ +...+..++.+|...
T Consensus 199 ~~~~~~ai~~~~~al~~~--------P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC--------CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 678999999999987 5 47777777666544 45788889999998877643 466777788887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=4.2e-10 Score=98.31 Aligned_cols=223 Identities=11% Similarity=0.035 Sum_probs=164.9
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH--------------cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVE--------------AGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
+.+..+|+++... ++.+...|...+..+.+ .+..++|..+|++..+...+.+...|...+..+.
T Consensus 33 ~Rv~~vyerAl~~--~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3455567777665 55666666555544332 2345778888888876545456667788888888
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCChhHHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA-YAKEGRLENAE 354 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~ 354 (490)
+.|+++.|..+|+.+....+......|...+..+.+.|+.+.|..+|..+.+.++. +...|...... +...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 89999999999999887554433446788888888899999999999998877665 44444444433 34468899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHHHHhcCChHHHHHH
Q 011226 355 ELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGF 432 (490)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 432 (490)
.+|+.+.+.. +.+...|...+..+...|++++|..+|++.++... ..| ....|...+..-...|+.+.+..+
T Consensus 190 ~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~-----~~~~~~~~iw~~~~~fE~~~G~~~~~~~~ 263 (308)
T d2onda1 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-----LPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-----SCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999862 33677888899999999999999999999988752 112 256788888888889999999999
Q ss_pred HHHHHHcCC
Q 011226 433 LEILKKAVD 441 (490)
Q Consensus 433 ~~~~~~~~~ 441 (490)
++++.+.-+
T Consensus 264 ~~r~~~~~~ 272 (308)
T d2onda1 264 EKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCc
Confidence 999888654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.2e-10 Score=99.14 Aligned_cols=203 Identities=16% Similarity=0.099 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 310 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (490)
+|..+..+|.+.|++++|...|++.....+ -+..+|..+..+|...|++++|+..|+++.+..+. +...+..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 455556666666777777777766665432 34566666666677777777777777766665443 3445566666666
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----HH
Q 011226 311 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD----MK 386 (490)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~ 386 (490)
..|++++|...|+...+..+. +......+...+.+.+..+.+..+........ ++...++ ++..+..... .+
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 677777777777766655443 33333333444444554444444444444421 1222221 1122211111 12
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
.+...+....... |+ ..+|..+...+...|++++|...|++++...| .+...|
T Consensus 193 ~~~~~~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 246 (259)
T d1xnfa_ 193 RLKADATDNTSLA--------EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV-HNFVEH 246 (259)
T ss_dssp HHHHHCCSHHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTCHHH
T ss_pred HHHHHHHHhhhcC--------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHH
Confidence 2222222211111 22 34566677788888888888888888888776 443333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=4.4e-11 Score=106.21 Aligned_cols=235 Identities=10% Similarity=-0.026 Sum_probs=171.1
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHccCCCCHHHHH-HHHHHHHhcCCh
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRDLSAYQ-FLITLYGQTGNL 280 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~ 280 (490)
...|++++|+.+++...+. .|.+...|..+..++...+ ++++|...++.+..... ++...+. .....+...+.+
T Consensus 84 ~~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhcccc
Confidence 3455677888888888886 6777778877777777665 47888888888877543 3455544 344566778888
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (490)
++|+..++.+...++. +...|..+...+...|++++|...+.......+ .. ..+...+...+..+++...+...
T Consensus 161 ~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~-~~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 161 AEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL----KE-LELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp HHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHH----HH-HHHHHHHHHHCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHH----HH-HHHHHHHHHhcchhHHHHHHHHH
Confidence 9999988888776653 566777788888888888877655544333211 11 12334455667788888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 361 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 361 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
..... ++...+..+...+...|+..+|+..+.+..+.. | +...+..+..++...|++++|...++++.+.
T Consensus 235 l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 235 LLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN--------KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77532 344555666677778889999999999888776 4 4677888889999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHh
Q 011226 440 VDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~ 457 (490)
+| .+...|+.|...+.-
T Consensus 306 dP-~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 306 DP-MRAAYLDDLRSKFLL 322 (334)
T ss_dssp CG-GGHHHHHHHHHHHHH
T ss_pred Cc-ccHHHHHHHHHHHhH
Confidence 98 777888877766653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=1.1e-09 Score=95.63 Aligned_cols=189 Identities=14% Similarity=0.077 Sum_probs=144.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
..++|..+|++..+.. .+.+...|...+..+.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|
T Consensus 79 ~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 79 FSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4577888888888754 556667778888888889999999999999887544333457888888888889999999999
Q ss_pred HHHHHhCCCCCchhHHHHHHH-HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-C
Q 011226 288 RSLRLAFPNTANISYLNMIQV-LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG-A 365 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~ 365 (490)
+.+.+..+. +...|...... +...|+.+.|..+|+.+....+. +...|...+..+...|+++.|+.+|++..+.. .
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 988876543 33344333332 34468889999999998876554 67888899999999999999999999988753 2
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 366 DPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 366 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.|+ ...|...+..-...|+.+.+.++++++.+.-
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 332 3467777777778899999999998887764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=4.4e-09 Score=93.75 Aligned_cols=303 Identities=14% Similarity=0.025 Sum_probs=187.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCCCcHHHHHHHHHHCCC-CCC----HhhHHHH
Q 011226 129 LLNCYCKELMTEKAEALLEKMKELNLGFS----SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI-MPD----SYTYNVW 199 (490)
Q Consensus 129 li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l 199 (490)
....+...|++++|++++++..+.....+ ...+..+...+...|++++|...|++..+... .++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34556677777777777777766432111 13455566677777777777777776654210 011 2334455
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC----CCHHHHHH
Q 011226 200 MRALAAVNDISGAERVIEEMKRD----G-RVAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAH----RDLSAYQF 269 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ 269 (490)
...+...|++..+...+...... + ...+ ....+..+...+...|+++.+...+......... .....+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 66777888888888877766542 1 0111 1234556677888888888888888877664322 22344555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCC------chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---hhhHHHH
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTA------NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYD---IRVTNVM 340 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 340 (490)
+...+...++...+...+........... ...+..+...+...|+++.|...+..........+ ...+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 66677778888888888776654322111 12345556677788999999988888765443322 2345567
Q ss_pred HHHHHhcCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--CCCcCCHHHH
Q 011226 341 IGAYAKEGRLENAEELKERARR----RGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG--GKWVPSSETI 413 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~p~~~~~ 413 (490)
...+...|++++|...++.+.. .+..|+ ...+..+...|...|++++|.+.+++.++.....+ ..+......+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 7888999999999999988763 233333 24566777888999999999999998776520000 0000122334
Q ss_pred HHHHHHHHhcCChHHHHH
Q 011226 414 RTFMRHFEQEKDVDGAEG 431 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~ 431 (490)
..++..+...+..+++..
T Consensus 338 ~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhcCCChHHHH
Confidence 455555666666665544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=8.1e-09 Score=91.98 Aligned_cols=301 Identities=12% Similarity=0.045 Sum_probs=206.7
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----CHHHHH
Q 011226 162 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPD----SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA----DWTTFS 233 (490)
Q Consensus 162 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 233 (490)
......+...|++++|++++++..+.....+ ...+..+..++...|++++|...+++..+.....+ ....+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345567889999999999999987532111 23566778899999999999999998876321111 234456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----cCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC----chhH
Q 011226 234 NLASIYVEAGLFEKAERALKELENR----NAHRD---LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA----NISY 302 (490)
Q Consensus 234 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 302 (490)
.+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+........... ...+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 7778889999999999999876542 11111 23555677888999999999999998876543222 2244
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhc----CCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHH
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESG----CATY--DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN---AKTWE 373 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~ 373 (490)
......+...++...+...+...... +..+ ....+..+...+...|+++.|...++...+.....+ ...+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 55566777889999998888775432 1111 123456667778899999999999988776433222 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--------C
Q 011226 374 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL--------G 444 (490)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------~ 444 (490)
.+...+...|++++|...++++....... ...|+ ...+..+..+|...|++++|.+.+++.++...+. .
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~ 333 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 333 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHH
Confidence 67788999999999999999887541000 02233 5677888899999999999999999987743211 1
Q ss_pred HHhHHHHHHHHHhcCCCcHH
Q 011226 445 VEVFEPLIRTYAAAGRTSPV 464 (490)
Q Consensus 445 ~~~~~~l~~~~~~~g~~~~~ 464 (490)
......++..+...++..++
T Consensus 334 ~~~~~~~~~~l~~~~~l~e~ 353 (366)
T d1hz4a_ 334 GEAMAQQLRQLIQLNTLPEL 353 (366)
T ss_dssp HHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHhcCCChHH
Confidence 22344455555565664444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=2.7e-10 Score=101.03 Aligned_cols=258 Identities=5% Similarity=-0.125 Sum_probs=191.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----------HHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 206 VNDISGAERVIEEMKRDGRVAADWTTFSNLASIY----------VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
.+..++|+.+++.+.+. .|.+...|+..-..+ ...|++++|+.+++......+ .+...|..+..++.
T Consensus 42 ~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~ 118 (334)
T d1dcea1 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 118 (334)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHHH
Confidence 33457888888888876 555665665433332 334557899999999987653 46677777777776
Q ss_pred hcC--ChhHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 276 QTG--NLSEVYRIWRSLRLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 276 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
..+ ++++|...+..+....+. +...+ ......+...+..+.|...++.+.+..+. +...|+.+...+...|++++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHH
Confidence 665 578999999999887654 33333 44556777899999999999999988776 88899999999999999998
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHH
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGF 432 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 432 (490)
|...+....+. .|+. ..+...+...+..+++...+........ ++...+..++..+...|+.++|...
T Consensus 197 A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 197 SGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRA-------EPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp SSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCC-------CCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCc-------chhhHHHHHHHHHHHHhhHHHHHHH
Confidence 87766655542 1111 2233445566777888888888887762 3455566677778888999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHH
Q 011226 433 LEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASK 481 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~ 481 (490)
+.+.....| .+..+|..++.+|...|+..+++...-+...+.|+..-+
T Consensus 265 ~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y 312 (334)
T d1dcea1 265 LQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 312 (334)
T ss_dssp HHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence 999998888 789999999999999999877776665666778865543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.5e-09 Score=92.15 Aligned_cols=149 Identities=9% Similarity=-0.066 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 011226 71 YYPALKLSENMEKRGMNK---TVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALL 146 (490)
Q Consensus 71 ~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~ 146 (490)
.+.|+.-++++....... ...++..+..+|.+.|++++|.+.|++... .+.+..+|+.+..++.+.|++++|++.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 344555555554432111 122455556667777777777777777766 4445667777777777777777777777
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011226 147 EKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 221 (490)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 221 (490)
++..+... -+..++..+..++...|++++|...|+...+.. +.+......+..++.+.+..+.+..+......
T Consensus 95 ~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 95 DSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 77776543 234566666667777777777777777766643 12333333333444455554444444444444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.6e-07 Score=68.00 Aligned_cols=106 Identities=16% Similarity=0.036 Sum_probs=82.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH
Q 011226 340 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419 (490)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 419 (490)
-...+...|++++|+..|++.++..+. +...|..+..++...|++++|+..+.++++... .+...|..+..+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~g~~ 80 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------DWGKGYSRKAAA 80 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhcc-------chhhHHHHHHHH
Confidence 355677788888888888888876433 666788888888888888888888888888761 457788888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 420 FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
+...|++++|...|++.++..| .+...+..+.++
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~l 114 (117)
T d1elwa_ 81 LEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQNM 114 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 8888888888888888888887 677666665544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=1.7e-07 Score=80.56 Aligned_cols=204 Identities=10% Similarity=0.060 Sum_probs=131.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccC----CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC-----chhHH
Q 011226 234 NLASIYVEAGLFEKAERALKELENRNA----HR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA-----NISYL 303 (490)
Q Consensus 234 ~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~ 303 (490)
.....|...|++++|.+.|.+..+-.. .+ -..+|..+..+|.+.|++++|.+.++.........+ ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345667788888888888887765211 11 135678888888899999999998887654322111 23455
Q ss_pred HHHHHHH-hcCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HH
Q 011226 304 NMIQVLV-NLKDLPGAEKCFKEWESG----CATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA------KT 371 (490)
Q Consensus 304 ~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~ 371 (490)
.+...|. ..|++++|...+....+. +..+ -..++..+...+...|++++|...|+++......... ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 5666664 469999999999886432 1111 1345777889999999999999999998875322111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHc
Q 011226 372 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ--EKDVDGAEGFLEILKKA 439 (490)
Q Consensus 372 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~ 439 (490)
+...+..+...|+++.|...+++..+....- ...........++.++.. .+.+++|+..|+++.+.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~--~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNF--ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 3344556778899999999999998875210 000113345666666654 23477777777655443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=9.3e-07 Score=70.29 Aligned_cols=145 Identities=16% Similarity=0.132 Sum_probs=93.5
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011226 307 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 386 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 386 (490)
..+...|+++.|.+.|..+ .+|+..+|..+..+|...|++++|.+.|++.++.+.. +...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence 3445566777776666543 2345566666777777777777777777777765433 4556666666777777777
Q ss_pred HHHHHHHHHHhcCCCCC--------CCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 387 LAVDCLEKAIDTGRGDG--------GKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~--------~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
+|++.|++.+....... ....++ ..++..+..++.+.|++++|.+.++.+.+..+.+........+..+.
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 77777777665321000 001122 46677788899999999999999999999888665544444444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=7.1e-07 Score=71.01 Aligned_cols=119 Identities=9% Similarity=0.005 Sum_probs=59.3
Q ss_pred HhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011226 169 AKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 248 (490)
...|+++.|++.|.++ .+|+..+|..+..++...|++++|+..|++.++. .+.+...|..+..+|.+.|++++|
T Consensus 16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 4445555555555432 2334445555555555555555555555555554 445555555555555555555555
Q ss_pred HHHHHHHHHccCCC---------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011226 249 ERALKELENRNAHR---------------DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 249 ~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (490)
.+.|++........ ...++..+..++.+.|++++|.+.+......
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55555544311000 0122333444555555555555555555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=5.3e-07 Score=77.37 Aligned_cols=194 Identities=12% Similarity=0.043 Sum_probs=98.8
Q ss_pred HHHhcCCCCcHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCCHHHHHHHHH
Q 011226 167 LYAKTGHPEKIPAIIQEMKAS----SIMP-DSYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADWTTFSNLAS 237 (490)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~ 237 (490)
.|...+++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|...++...+. |.......++..+..
T Consensus 46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 125 (290)
T d1qqea_ 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (290)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence 344445555555555444321 1111 1235556666677777777777766665442 111112334455555
Q ss_pred HHHH-cCCHHHHHHHHHHHHHc----cCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch------hHHHH
Q 011226 238 IYVE-AGLFEKAERALKELENR----NAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI------SYLNM 305 (490)
Q Consensus 238 ~~~~-~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l 305 (490)
.|.. .|++++|.+.+++..+. +..+ -..++..+...+...|++++|+..|+++.......... .+...
T Consensus 126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (290)
T d1qqea_ 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (290)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence 5544 47777777777765431 1101 12345666777777777777777777766543322111 12334
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCC-C---hhhHHHHHHHHHh--cCChhHHHHHHHHH
Q 011226 306 IQVLVNLKDLPGAEKCFKEWESGCATY-D---IRVTNVMIGAYAK--EGRLENAEELKERA 360 (490)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~~--~~~~~~a~~~~~~~ 360 (490)
+..+...|+++.|.+.++...+..+.. + ......++.++.. .+.+++|+..|+.+
T Consensus 206 ~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445556777777777777765543221 1 1233444554443 23355565555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=7.3e-07 Score=68.61 Aligned_cols=107 Identities=17% Similarity=0.013 Sum_probs=74.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH
Q 011226 340 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419 (490)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 419 (490)
....|.+.|++++|...|++..+.+.. +...|..+..+|...|++++|+..|+++++... -+...|..++.+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-------~~~~a~~~~g~~ 87 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------KYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-------cchHHHHHHHHH
Confidence 344566777777777777777775432 556677777777777777777777777777651 335677777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 420 FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+...|++++|...++++....| .+...+..+..+.
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p-~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECN 122 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 7777777777777777777776 5666665555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=1.1e-07 Score=76.80 Aligned_cols=100 Identities=15% Similarity=0.048 Sum_probs=54.8
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011226 297 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 376 (490)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 376 (490)
|+...+......+.+.|++++|+..|.......+. +...|..+..+|.+.|++++|+..|+..++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 33444445555555666666666666555555443 5555555555666666666666666655543211 344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
.+|...|++++|+..|+++++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 5556666666666666555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=5.7e-07 Score=65.01 Aligned_cols=101 Identities=12% Similarity=-0.045 Sum_probs=89.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
-...+...|++++|+.+|+++++... .+...|..+..++.+.|++++|+..++++++.+| .++..|..+..+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~ 80 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDP-------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 80 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-------cchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHH
Confidence 35678899999999999999999871 4588899999999999999999999999999999 899999999999
Q ss_pred HHhcCCCcHHHHHHHhhCCCCCCHHHHHH
Q 011226 455 YAAAGRTSPVMLRRLKMEKVEVSEASKKL 483 (490)
Q Consensus 455 ~~~~g~~~~~~~~~m~~~~~~p~~~~~~~ 483 (490)
+...|++.+++...-+...+.|+......
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 109 (117)
T d1elwa_ 81 LEFLNRFEEAKRTYEEGLKHEANNPQLKE 109 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999998888877777788888766543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.8e-06 Score=66.40 Aligned_cols=93 Identities=14% Similarity=0.009 Sum_probs=70.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 305 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
....|.+.|++++|...|.+..+..+. +...|..+..+|...|++++|...|+.+++.+.. +...|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence 455667778888888888887777665 7777778888888888888888888888775432 55677777788888888
Q ss_pred HHHHHHHHHHHHhcC
Q 011226 385 MKLAVDCLEKAIDTG 399 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~ 399 (490)
+++|+..++++....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 888888888888776
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=6.8e-07 Score=64.77 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCCCCcCC-HHHH
Q 011226 338 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVPS-SETI 413 (490)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~ 413 (490)
..++..+...+++++|.+.|+...+.+.. +..++..+..++.+.++ +++|+.++++++... ..|+ ...+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~------~~~~~~~~~ 75 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG------SKEEQRDYV 75 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS------CHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc------CCchHHHHH
Confidence 45677788888999999999998886433 66777788888876554 456899999888776 1122 3467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLI 452 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 452 (490)
..+..+|.+.|++++|.+.|+++++.+| .+..+...+-
T Consensus 76 ~~Lg~~y~~~g~~~~A~~~~~~aL~~~P-~~~~A~~l~~ 113 (122)
T d1nzna_ 76 FYLAVGNYRLKEYEKALKYVRGLLQTEP-QNNQAKELER 113 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 7888889999999999999999999887 6666665443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.51 E-value=0.00022 Score=60.93 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=148.8
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 011226 88 KTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTL 167 (490)
Q Consensus 88 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 167 (490)
|+......+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~ 78 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 78 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHH
Confidence 4555556677778888888888888887764 677778888888888888877643 245677777777
Q ss_pred HHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011226 168 YAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (490)
+.+......+ .+...+...++.....++..|-..|.+++...+++..... ...+...++.++..|++.+ .++
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~-~~k 150 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK-PQK 150 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTC-HHH
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhC-hHH
Confidence 7766543222 2223333445566667888888888888888888887654 4667777888888887754 344
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC--------CCCCchhHHHHHHHHHhcCChhhHH
Q 011226 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF--------PNTANISYLNMIQVLVNLKDLPGAE 319 (490)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (490)
..+.++.. +.. .-...++..|-+.+-++++.-++..+.... ..++..-....+..+.+..+.+
T Consensus 151 l~e~l~~~---s~~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e--- 221 (336)
T d1b89a_ 151 MREHLELF---WSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVE--- 221 (336)
T ss_dssp HHHHHHHH---STT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTH---
T ss_pred HHHHHHhc---ccc---CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChH---
Confidence 44443332 111 122334455555555555555554431100 1112222222333333333333
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 320 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.|-..+..|... +++-...++..+... + |. ..++..+-+.++..-...+++.....+
T Consensus 222 ----------------~~~~~i~~yL~~-~p~~i~~lL~~v~~~-~--d~---~r~V~~~~k~~~l~li~p~Le~v~~~n 278 (336)
T d1b89a_ 222 ----------------LYYRAIQFYLEF-KPLLLNDLLMVLSPR-L--DH---TRAVNYFSKVKQLPLVKPYLRSVQNHN 278 (336)
T ss_dssp ----------------HHHHHHHHHHHH-CGGGHHHHHHHHGGG-C--CH---HHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred ----------------HHHHHHHHHHHc-CHHHHHHHHHHhccC-C--CH---HHHHHHHHhcCCcHHHHHHHHHHHHcC
Confidence 333333333332 122233333222221 1 11 223444455566666666666655443
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 434 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 434 (490)
+..+.+++...|...++++.-....+
T Consensus 279 ---------~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 279 ---------NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 34677788888888887665444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=6.8e-05 Score=62.77 Aligned_cols=223 Identities=13% Similarity=0.012 Sum_probs=107.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCCHhhHHH
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK----TGHPEKIPAIIQEMKASSIMPDSYTYNV 198 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 198 (490)
+..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455556666666777777777777776655 34444445555554 334555666666655544 2333333
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 011226 199 WMRALAA----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFL 270 (490)
Q Consensus 199 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 270 (490)
+...+.. ..+.+.|...++...+.| . ......+...+.. ......+...+...... .+...+..+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g-~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLK-Y---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhh-h---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 3333322 345666666666666654 1 1122223222322 23445555555554442 344455555
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 011226 271 ITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIG 342 (490)
Q Consensus 271 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (490)
...|.. ..+...+...++...+.+ +......+...+.. ..+.+.|...|....+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 555544 233344444444443332 22333333333332 345555555555555543 2334444444
Q ss_pred HHHh----cCChhHHHHHHHHHHHcC
Q 011226 343 AYAK----EGRLENAEELKERARRRG 364 (490)
Q Consensus 343 ~~~~----~~~~~~a~~~~~~~~~~~ 364 (490)
.|.. ..+.++|.+.|+...+.|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 4443 224555555555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.45 E-value=4.4e-07 Score=73.09 Aligned_cols=118 Identities=12% Similarity=-0.066 Sum_probs=97.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-H
Q 011226 332 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-S 410 (490)
Q Consensus 332 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~ 410 (490)
|+...+......|.+.|++++|+..|++.++. -+.+...|..+..+|.+.|++++|+..|+++++.. |+ .
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--------p~~~ 72 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSV 72 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------TTCH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--------CCcH
Confidence 67777788899999999999999999999986 25556778889999999999999999999999886 64 8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 459 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (490)
..|..+..+|...|++++|...|+++.+..| .+...+...+..+...+
T Consensus 73 ~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998765 33333444444444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.43 E-value=0.0003 Score=58.61 Aligned_cols=224 Identities=13% Similarity=0.011 Sum_probs=130.8
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQ 268 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (490)
+..+..|...+...+|+++|++.|++..+.| +...+..|...|.. ..+...|...++.....+. .....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhh
Confidence 3445555566666777777777777776654 34445556666655 4566777777766665432 23333
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 011226 269 FLITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVM 340 (490)
Q Consensus 269 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (490)
.+...+.. ..+.+.|...++.....+.. .....+...+.. ......+...+......+ +...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 33333332 34556677777666554432 122222222221 333445555555544432 45566666
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 341 IGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 341 i~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
...|.. ..+...+...++...+.| +......+...|.. ..++++|+.+|++..+.| ++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---------~~~a 216 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---------NGGG 216 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---------CHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---------CHHH
Confidence 666665 345566777777766653 45555555555544 467888888988888876 3445
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 011226 413 IRTFMRHFEQ----EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 413 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 441 (490)
+..|...|.. ..+.++|.+.|++..+.|.
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 5566666654 3478889999988888876
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=4.2e-06 Score=64.88 Aligned_cols=82 Identities=10% Similarity=0.004 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
.+|+.+..+|.+.|++++|+..+++.++.. | ++..+..+..+|...|++++|...|+++++.+| .|..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~--------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~ 133 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAK 133 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc--------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHH
Confidence 356677888999999999999999999987 5 688999999999999999999999999999998 788888
Q ss_pred HHHHHHHHhcCC
Q 011226 449 EPLIRTYAAAGR 460 (490)
Q Consensus 449 ~~l~~~~~~~g~ 460 (490)
..+..+..+.+.
T Consensus 134 ~~l~~~~~~~~~ 145 (170)
T d1p5qa1 134 TQLAVCQQRIRR 145 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777655544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.40 E-value=2.1e-06 Score=61.29 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=66.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHH
Q 011226 339 VMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR 418 (490)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 418 (490)
.+...+.+.|++++|...|++.++.... +...|..+..++.+.|++++|+..++++++... .+...+..+..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------~~~~a~~~la~ 92 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-------KDIAVHAALAV 92 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccccc-------ccccchHHHHH
Confidence 3455677778888888888887775432 566777777777788888888888888777761 33777777777
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 011226 419 HFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 419 ~~~~~g~~~~a~~~~~~~~ 437 (490)
+|...|++++|.+.+++.+
T Consensus 93 ~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 93 SHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 8888888888887777653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.39 E-value=0.00036 Score=59.59 Aligned_cols=279 Identities=11% Similarity=0.052 Sum_probs=143.0
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNC 132 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 132 (490)
++......+...|-+.|.++.|..+|..+. .|..++..+.+.+++..|.+.+.... +..+|..+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~----~~~~~k~~~~~ 78 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN----STRTWKEVCFA 78 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC----CHHHHHHHHHH
Confidence 455556666777778888888888887542 24567777888888888888887664 56688888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA 212 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 212 (490)
+.+......+. +.......+......++..|-..|.+++...++...... -.++...++.++.+|++.+. ++
T Consensus 79 l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k- 150 (336)
T d1b89a_ 79 CVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK- 150 (336)
T ss_dssp HHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH-
T ss_pred HHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH-
Confidence 88777665432 222333345555667888888888888888888876543 24566677788888877543 33
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------cCCCCHHHHHHHHHHHHhcCChhHHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR--------NAHRDLSAYQFLITLYGQTGNLSEVY 284 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (490)
+.+.+...+ ...+.. .++..|.+.+-+.++.-++..+... ...++..-....+..+.+..+.+...
T Consensus 151 --l~e~l~~~s-~~y~~~---k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~ 224 (336)
T d1b89a_ 151 --MREHLELFW-SRVNIP---KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY 224 (336)
T ss_dssp --HHHHHHHHS-TTSCHH---HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred --HHHHHHhcc-ccCCHH---HHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHH
Confidence 333333322 223332 2344444444444444444333210 01122223333444445555544444
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 285 RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
++.....+. +++-...++..+... . |. ..++..+.+.+++......++...+.|
T Consensus 225 ~~i~~yL~~--------------------~p~~i~~lL~~v~~~-~--d~---~r~V~~~~k~~~l~li~p~Le~v~~~n 278 (336)
T d1b89a_ 225 RAIQFYLEF--------------------KPLLLNDLLMVLSPR-L--DH---TRAVNYFSKVKQLPLVKPYLRSVQNHN 278 (336)
T ss_dssp HHHHHHHHH--------------------CGGGHHHHHHHHGGG-C--CH---HHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHc--------------------CHHHHHHHHHHhccC-C--CH---HHHHHHHHhcCCcHHHHHHHHHHHHcC
Confidence 444333322 122222333222221 1 11 234444555566666666666555433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH
Q 011226 365 ADPNAKTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~g~~~~ 387 (490)
+....+++...|...++++.
T Consensus 279 ---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 279 ---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHH
T ss_pred ---hHHHHHHHHHHHhCcchhHH
Confidence 33456666666666666544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.34 E-value=3.2e-06 Score=60.31 Aligned_cols=90 Identities=11% Similarity=-0.035 Sum_probs=60.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 383 (490)
.+...+.+.|++++|...|++.....+. +..+|..+..++.+.|++++|+..|+...+..+. +...|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence 3455666677777777777777666554 5667777777777777777777777777765322 4566666777777777
Q ss_pred CHHHHHHHHHHH
Q 011226 384 DMKLAVDCLEKA 395 (490)
Q Consensus 384 ~~~~A~~~~~~~ 395 (490)
++++|++.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777777777664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.7e-06 Score=62.56 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=55.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL---ENAEELKERARRRGADPNA-KTWEIFSDYY 379 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~ 379 (490)
.+++.+...+++++|.+.|+.....++. ++.++..+..++.+.++. ++|+.+|+++...+..|+. .+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4555566666666666666666665554 555555666666554333 3466666666554322221 2455556666
Q ss_pred HhcCCHHHHHHHHHHHHhcC
Q 011226 380 LRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~ 399 (490)
.+.|++++|++.|+++++..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 66666666666666666665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=5.6e-07 Score=83.53 Aligned_cols=111 Identities=9% Similarity=-0.028 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (490)
.+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|++..+..+. +...|+.+...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34444455555555555555444433221 1134444555555555555555555555554211 3345555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh
Q 011226 381 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 422 (490)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 422 (490)
..|+..+|+..|.+.+... .|-...+..|...+.+
T Consensus 198 ~~~~~~~A~~~y~ral~~~-------~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-------FPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-------BCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHH
Confidence 5555555555555555543 1445555555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.29 E-value=3.1e-05 Score=58.59 Aligned_cols=79 Identities=10% Similarity=-0.013 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
.+|..+..+|.+.|++++|++.++++++... .+...|..+..++...|++++|...|+++++.+| .|..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-------~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P-~n~~~~~ 139 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRN 139 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccc-------hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 4667788899999999999999999999871 4689999999999999999999999999999998 7888877
Q ss_pred HHHHHHH
Q 011226 450 PLIRTYA 456 (490)
Q Consensus 450 ~l~~~~~ 456 (490)
.+..+..
T Consensus 140 ~l~~~~~ 146 (153)
T d2fbna1 140 SYELCVN 146 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=6.3e-05 Score=57.99 Aligned_cols=62 Identities=13% Similarity=-0.032 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
+|..+..+|.+.|++++|...++......+. ++.++..+..+|...|++++|...|+...+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4555677777888888888888887776655 6777777788888888888888888888775
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.9e-05 Score=57.73 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC-----HHHHHHHH
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN-----AKTWEIFS 376 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~-----~~~~~~l~ 376 (490)
..+...+...|++++|...|.+..+.++. +...+..+..+|.+.|++++|...++++++.... +. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34566677777777777777777776654 6677777777777778888888777777653111 11 13455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
..+...+++++|++.|++.+...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC
Confidence 66777788888888888877665
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.7e-05 Score=57.93 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 416 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l 416 (490)
+..+...+...|++++|+..|.+.++.+.. +...+..+..+|.+.|++++|++.++++++...........-..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 456778899999999999999999997543 6788999999999999999999999999886411000000003577888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
...+...+++++|...|++.+...+
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 8899999999999999999988764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.10 E-value=3.9e-05 Score=59.24 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
...|..+..++.+.|++++|+..++++++.. +.+...|..+..++...|++++|...|+++++..| .+..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~ 148 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQ 148 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 3456677788999999999999999999886 14588999999999999999999999999999998 788888
Q ss_pred HHHHHHHHh
Q 011226 449 EPLIRTYAA 457 (490)
Q Consensus 449 ~~l~~~~~~ 457 (490)
..+..+..+
T Consensus 149 ~~l~~~~~~ 157 (169)
T d1ihga1 149 AELLKVKQK 157 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776644
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.09 E-value=5.9e-05 Score=58.05 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (490)
.|..+..+|.+.|++++|+..+++.++... .+...|..+..++...|++++|...|+++++.+| .+..+...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-------~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~ 137 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQ 137 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhccc-------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 456677788999999999999999999861 5688999999999999999999999999999998 88888887
Q ss_pred HHHHHHhcCC
Q 011226 451 LIRTYAAAGR 460 (490)
Q Consensus 451 l~~~~~~~g~ 460 (490)
+..+....+.
T Consensus 138 l~~~~~~~~~ 147 (168)
T d1kt1a1 138 IFMCQKKAKE 147 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777655443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.08 E-value=2.2e-05 Score=59.48 Aligned_cols=111 Identities=10% Similarity=-0.020 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011226 374 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-----------SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD 442 (490)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 442 (490)
.-...+.+.|++.+|+..|.+++..-.. ....++ ..+|..+..+|.+.|++++|++.++++++.+|
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p- 98 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK- 98 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcc--hhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc-
Confidence 3445667778888888888887765311 001111 24667788899999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHHHh
Q 011226 443 LGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAI 487 (490)
Q Consensus 443 ~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~ 487 (490)
.+..+|..++.+|...|++.+++...-+...+.|+........+.
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999888887788888987665444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.3e-06 Score=81.05 Aligned_cols=111 Identities=10% Similarity=-0.071 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+.+.|+.+.|...+....... + ..++..+...+...|++++|...|++..+..+ -+...|+.|...
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAIL 195 (497)
T ss_dssp ----------------------CCHHHHHH---H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHH
Confidence 344455555556666666665555544321 1 23445556666666666666666666655432 234566666666
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 011226 274 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 310 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (490)
+...|+..+|...|.+.....+ |-..++..|...+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALS 231 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHH
Confidence 6666666666666666554432 33444555544443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.99 E-value=7.7e-05 Score=57.84 Aligned_cols=110 Identities=18% Similarity=0.092 Sum_probs=79.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCC-CC-------------c-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTGRGDGG-KW-------------V-PSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~-------------~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
......|++++|.+.|.+.+....-+-. .+ . .....+..+..++.+.|++++|...++++++..|
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P 98 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP 98 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 3455666777777666666665210000 00 0 0124677888999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCCcHHH--HHHH-----hhCCCCCCHHHHHHHHHh
Q 011226 442 DLGVEVFEPLIRTYAAAGRTSPVM--LRRL-----KMEKVEVSEASKKLLEAI 487 (490)
Q Consensus 442 ~~~~~~~~~l~~~~~~~g~~~~~~--~~~m-----~~~~~~p~~~~~~~l~~~ 487 (490)
.+...|..++.+|...|+..+++ ++.. ++.|+.|.+.+..+...+
T Consensus 99 -~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~i 150 (179)
T d2ff4a2 99 -YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 150 (179)
T ss_dssp -TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 99999999999999999966554 3333 446999999987765543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.87 E-value=0.00049 Score=52.64 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
|..+..+|.+.|++++|+..+.......+. +...|..+..++...|++++|...|+.+.+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444555555555555555555544433 445555555555555555555555555554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=8e-05 Score=50.82 Aligned_cols=85 Identities=12% Similarity=-0.092 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE 446 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 446 (490)
+...+-.+...+.+.|++++|+..|++.++....... ..++ ..++..+..++.+.|++++|...++++++..| .+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P-~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc-CCHH
Confidence 3444456777888999999999999998876311100 1133 67899999999999999999999999999999 7888
Q ss_pred hHHHHHHH
Q 011226 447 VFEPLIRT 454 (490)
Q Consensus 447 ~~~~l~~~ 454 (490)
+++.+...
T Consensus 82 a~~Nl~~~ 89 (95)
T d1tjca_ 82 ANGNLKYF 89 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.00015 Score=55.69 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
.|..+..++.+.|++++|+..+..+.+..+. +...|..+..+|...|++++|...|+...+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444555556666666666666666555443 5555666666666666666666666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=0.001 Score=51.23 Aligned_cols=123 Identities=9% Similarity=-0.046 Sum_probs=81.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
.........|++++|.+.|.+.+... +.... ......+-+...-..+... ....+..+..++...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 34456778899999999888887742 11100 0111111222222222221 2345667788888888
Q ss_pred ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----ccCCCCHHH
Q 011226 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN-----RNAHRDLSA 266 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 266 (490)
++++|+..++.+.+. .+.+...|..++.+|.+.|+.++|++.|+++.. .|+.|+..+
T Consensus 82 ~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999988888887 678888888888999999999988888888643 577777654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.67 E-value=0.00017 Score=53.76 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHH
Q 011226 349 RLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-----------DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 417 (490)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 417 (490)
.+++|+..|++.++.++. +..+|..+..+|...| .+++|.+.|++.++.. |+...+..-+
T Consensus 56 ~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--------P~~~~~~~~L 126 (145)
T d1zu2a1 56 MIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSL 126 (145)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC--------CCHHHHHHHH
Confidence 345677777777665332 4456666655555433 3567777888877776 6655554444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 011226 418 RHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
..+ ..|...+.++.+.+
T Consensus 127 ~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 127 EMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHH------HTHHHHHHHHHHSS
T ss_pred HHH------HHHHHHHHHHHHHh
Confidence 333 34445555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.64 E-value=5.5e-05 Score=62.77 Aligned_cols=123 Identities=9% Similarity=-0.027 Sum_probs=81.4
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHH
Q 011226 309 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 387 (490)
..+.|++++|...+++..+..+. |...+..+...|+..|++++|...++...+. .|+. ..+..+...+...+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~---- 78 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQ---- 78 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH----
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcc----
Confidence 34678999999999998888776 8888999999999999999999999998885 3443 33333333332222
Q ss_pred HHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 388 AVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 388 A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
...++......+.....|+ ...+......+...|+.++|.+.++++.+..|
T Consensus 79 ---~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 79 ---ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp ---HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred ---ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 2222222211110001132 33344455667888999999999999988776
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.60 E-value=0.00019 Score=53.38 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=69.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHH
Q 011226 346 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----------NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT 415 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~ 415 (490)
+.+.+++|...|+...+..+. +...+..+..+|.. .+.+++|+..|+++++... .+...|..
T Consensus 9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-------~~~~a~~~ 80 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-------KKDEAVWC 80 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-------TCHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-------hhhHHHhh
Confidence 344566666666666665322 44455555444442 2446789999999999871 34888999
Q ss_pred HHHHHHhcC-----------ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 416 FMRHFEQEK-----------DVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 416 l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+..+|...| .++.|.+.|+++++..| .+...+..|....
T Consensus 81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P-~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP-DNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC-CHHHHHHHHHHHH
Confidence 988887765 36889999999999998 6776666665554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.53 E-value=8.1e-05 Score=61.72 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=38.2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 258 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 258 (490)
.+.|++++|+..+++.++. .|.+...+..+...++..|++++|.+.|+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4567777777777777776 5667777777777777777777777777777664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.31 E-value=0.0012 Score=49.66 Aligned_cols=103 Identities=11% Similarity=-0.021 Sum_probs=72.9
Q ss_pred hHHHH--HHHHHhcCChhHHHHHHHHHHHcCC-CCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011226 336 VTNVM--IGAYAKEGRLENAEELKERARRRGA-DPN----------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD 402 (490)
Q Consensus 336 ~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 402 (490)
+|..+ ...+...|++++|+..|++.++... .|+ ...|+.+..+|...|++++|+..+++.++.....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4456677888888888888876311 121 3567888889999999999999999987642000
Q ss_pred CCCCcCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 403 GGKWVPS-----SETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 403 ~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
.. ..++ ...+..+..+|...|++++|...|+++++.
T Consensus 89 ~~-~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GE-LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CC-TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cc-ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 1122 235677889999999999999999998875
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.24 E-value=0.0046 Score=46.24 Aligned_cols=93 Identities=11% Similarity=0.008 Sum_probs=55.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc-----CCCC-
Q 011226 200 MRALAAVNDISGAERVIEEMKRDGRVAAD----------WTTFSNLASIYVEAGLFEKAERALKELENRN-----AHRD- 263 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~- 263 (490)
...+...|++++|+..|++.++.....|+ ...|+.+..+|.+.|++++|...+++..... ..++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44556667777777777777653211121 2456667777777777777777776655311 1111
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 264 ----LSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 264 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
...++.+..+|...|++++|+..|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345556666677777777776666543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.0066 Score=40.78 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=30.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011226 198 VWMRALAAVNDISGAERVIEEMKRDG----RVAA-DWTTFSNLASIYVEAGLFEKAERALKELENR 258 (490)
Q Consensus 198 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 258 (490)
.+...+.+.|++++|+..|++..+.. ...+ ...++..+..++.+.|++++|...++++.+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 44555555555555555555554321 0011 1234555555555555555555555555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.31 E-value=0.056 Score=38.66 Aligned_cols=110 Identities=13% Similarity=-0.026 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCChhHHH
Q 011226 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGAE 213 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 213 (490)
|+++|++.|++..+.|. ......|.. ....+.++|.+++++..+.| ++..+..|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45666666666655542 222222221 12233445555555555444 33333333333332 22445555
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcc
Q 011226 214 RVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRN 259 (490)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 259 (490)
++|+...+.| ++.....|...|.. ..+.++|.++|+...+.|
T Consensus 80 ~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC----cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555555543 22233334444433 234555555555544433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.30 E-value=0.095 Score=37.37 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=50.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh
Q 011226 347 EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 422 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 422 (490)
..+.++|...+++..+.| +......+...|.. ..+.++|+++|++..+.| ++.....|...|..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---------~~~a~~~Lg~~y~~ 103 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---------DQDGCLILGYKQYA 103 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---------cchHHHHHHHHHHc
Confidence 345667777777766654 34444444444433 345677788888777775 23344445555544
Q ss_pred ----cCChHHHHHHHHHHHHcCC
Q 011226 423 ----EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 423 ----~g~~~~a~~~~~~~~~~~~ 441 (490)
..+.++|.++|++..+.|.
T Consensus 104 G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 104 GKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCccCCCHHHHHHHHHHHHHCCC
Confidence 3567778888887777765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.58 E-value=0.19 Score=34.79 Aligned_cols=74 Identities=12% Similarity=0.064 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCCCCcCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 366 DPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
.|+..+--....++++.. +.++++.+++++.+.+ |. ...+..|..+|.+.|+++.|.+.++.+++..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--------p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 355556556666777654 4567888888888765 43 3566777788889999999999999999988
Q ss_pred CCCCHHhH
Q 011226 441 DDLGVEVF 448 (490)
Q Consensus 441 ~~~~~~~~ 448 (490)
| .|..+.
T Consensus 104 P-~n~qA~ 110 (124)
T d2pqrb1 104 R-NNKQVG 110 (124)
T ss_dssp T-TCHHHH
T ss_pred C-CcHHHH
Confidence 8 665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.56 E-value=0.2 Score=34.41 Aligned_cols=140 Identities=16% Similarity=0.106 Sum_probs=71.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHH
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEV 283 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 283 (490)
...|.+++..+++.+..+. .+..-||.++--....-+-+-..++++.+.+ -.|.. ..++....
T Consensus 13 ildG~ve~Gveii~k~~~s----s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FDls----------~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc----CCccccceeeeecccccchHHHHHHHHHHhh---hcCch----------hhhcHHHH
Confidence 4456666666666666553 2344444455444445555555555544432 11211 11222222
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 284 YRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
...+-.+ ..+...+...++.+...|+-+.-.++++.+.+. -++++...-.+..+|.+.|...++-+++.+.-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2111111 112334455566666666666666666665553 3456666666667777777777777777776666
Q ss_pred CCC
Q 011226 364 GAD 366 (490)
Q Consensus 364 ~~~ 366 (490)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.12 E-value=0.98 Score=39.79 Aligned_cols=317 Identities=9% Similarity=-0.042 Sum_probs=160.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC
Q 011226 94 AIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGH 173 (490)
Q Consensus 94 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 173 (490)
...+..+.+.+++......+.. .+.+...-.....+....|+.+.|...+..+-..|. ........+...+.+.|.
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~---~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~ 151 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPE---KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCHHHHHHhccC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCC
Confidence 3446677788888776655533 234555555677778888999888888887766553 445556667776666665
Q ss_pred CCcHH--HHHHHHHHCCC-----------CCCHh-hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 011226 174 PEKIP--AIIQEMKASSI-----------MPDSY-TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 174 ~~~a~--~~~~~~~~~~~-----------~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (490)
..... .-+..+...|- .++.. .....+.... +...+ ...... .+.+......+..++
T Consensus 152 lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~---~~~~~~---~~~~~~~~~~~~~~l 222 (450)
T d1qsaa1 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTV---LTFART---TGATDFTRQMAAVAF 222 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGH---HHHHHH---SCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhH---HHHHhc---CCCChhhhHHHHHHH
Confidence 54322 22333333320 11110 0111111110 11111 111111 222333222333333
Q ss_pred HH--cCCHHHHHHHHHHHHHccCCCCHHHHHHHHH----HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC
Q 011226 240 VE--AGLFEKAERALKELENRNAHRDLSAYQFLIT----LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 313 (490)
Q Consensus 240 ~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (490)
.+ ..+.+.|...+........ .+..-+..+-. .....+..+.+...+........ +.......+......+
T Consensus 223 ~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~ 299 (450)
T d1qsaa1 223 ASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTG 299 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHT
T ss_pred HHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcC
Confidence 32 3467777777777655432 22222222222 22234555666666665544332 3333344455555667
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc------------CCCCC----------HHH
Q 011226 314 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR------------GADPN----------AKT 371 (490)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~p~----------~~~ 371 (490)
++..+...+..+...... .....--+..++...|+.+.|...|..+... |..++ ...
T Consensus 300 ~~~~~~~~~~~l~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 378 (450)
T d1qsaa1 300 DRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSA 378 (450)
T ss_dssp CHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCH
T ss_pred ChHHHHHHHHhcCccccc-HHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHh
Confidence 888777777766432222 2333345667777888888888888776532 11000 000
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 372 -----WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 372 -----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
-..-+..+...|+...|...|..+... .+......+.....+.|.++.|+....+.
T Consensus 379 ~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---------~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKS---------KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---------CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 011233455666666676666666543 23445555566666667777666555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.48 E-value=0.44 Score=32.70 Aligned_cols=137 Identities=13% Similarity=0.158 Sum_probs=96.7
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch---hHHHHHHHHHhcCCh
Q 011226 239 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI---SYLNMIQVLVNLKDL 315 (490)
Q Consensus 239 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~ 315 (490)
+.-.|..++..+++.+...+ .+..-||-+|--....-+-+...++++.+-.. .|.. -...++.++...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls~C~Nlk~vv~C~~~~n~- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNT- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTC-
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCchhhhcHHHHHHHHHHhcc-
Confidence 34568888888888887764 34555666666666666666666666665332 1221 12344444444332
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011226 316 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKA 395 (490)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 395 (490)
+...++..++.+..+|+-+.-.++++.+.+. -+|++.....+..+|-+.|...++-+++.++
T Consensus 85 -----------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 85 -----------------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp -----------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4455667788899999999999999997774 4678888889999999999999999999999
Q ss_pred HhcCC
Q 011226 396 IDTGR 400 (490)
Q Consensus 396 ~~~~~ 400 (490)
-+.|.
T Consensus 147 Ce~G~ 151 (161)
T d1wy6a1 147 CKKGE 151 (161)
T ss_dssp HHTTC
T ss_pred HHHhH
Confidence 99983
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.06 E-value=0.48 Score=32.65 Aligned_cols=67 Identities=15% Similarity=0.018 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011226 227 ADWTTFSNLASIYVEAG---LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 227 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (490)
++..+-....-+++++. +.++++.+|+++.+.+.......+..|.-+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44444444444444433 23455555555554321111223344444555555555555555555553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.59 E-value=0.78 Score=29.69 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
.=++.+-++.+.... ..|++.+..+.+++|.+.+++..|.++|+-++..-- ++...|..+++-+
T Consensus 22 ~we~rrgmN~l~~~D------lVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yilqel 85 (105)
T d1v54e_ 22 AWELRKGMNTLVGYD------LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQEL 85 (105)
T ss_dssp HHHHHHHHHHHTTSS------BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHHHHH
Confidence 335666677777776 779999999999999999999999999999887543 4566777666543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.48 E-value=0.31 Score=31.58 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 236 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 236 (490)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++|+.+... ..++...|..++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence 34455556666667778888888888888888888888888877765 334444555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=3.2 Score=36.28 Aligned_cols=332 Identities=11% Similarity=0.022 Sum_probs=176.8
Q ss_pred cHHHHHHHHHHhcCCCCHHhH-HHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhc
Q 011226 38 SVRQQLNQFLKSKKRVFKWEV-GDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDL 116 (490)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 116 (490)
+..++..-+.+....|-...+ ...+..+.+.++++..+..+. ..+.+...-.....+....|+.+.|...+..+
T Consensus 54 ~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~l 128 (450)
T d1qsaa1 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (450)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 333444333333333333333 345667777888766554331 22345555556677777888888877776654
Q ss_pred CC-CCCCHhHHHHHHHHHHHcC------------------CHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCCCCc
Q 011226 117 PE-TSKNHLTYGSLLNCYCKEL------------------MTEKAEALLEKMKELNLGFSS-MPFNSLMTLYAKTGHPEK 176 (490)
Q Consensus 117 ~~-~~~~~~~~~~li~~~~~~~------------------~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 176 (490)
-. ....+..+..+...+.+.| ++..|..+...+. ++. ......+... .+...
T Consensus 129 W~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~-----~~~~~~~~a~~~l~---~~p~~ 200 (450)
T d1qsaa1 129 WLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMP-----ADYQTIASAIISLA---NNPNT 200 (450)
T ss_dssp HSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----GGGHHHHHHHHHHH---HCGGG
T ss_pred HhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCC-----hhHHHHHHHHHHHH---hChHh
Confidence 33 1122333444444444433 3333333322111 111 1112222221 12233
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----HHcCCHHHHHH
Q 011226 177 IPAIIQEMKASSIMPDSYTYNVWMRALAA--VNDISGAERVIEEMKRDGRVAADWTTFSNLASIY----VEAGLFEKAER 250 (490)
Q Consensus 177 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~ 250 (490)
+..... .. .++......+..++.+ ..+.+.+...+...... ...+...+..+-... ...+..+.+..
T Consensus 201 ~~~~~~---~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 273 (450)
T d1qsaa1 201 VLTFAR---TT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQA--QQLNEDQIQELRDIVAWRLMGNDVTDEQAK 273 (450)
T ss_dssp HHHHHH---HS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred HHHHHh---cC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhc--ccccHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 322221 11 1233333333333332 34777888888877765 333333333332222 23456677777
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc--
Q 011226 251 ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG-- 328 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 328 (490)
.+......+ .+.....-.+......+++..+...+..|... +.......-.+..++...|+.+.|...|..+...
T Consensus 274 ~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~ 350 (450)
T d1qsaa1 274 WRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRG 350 (450)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCC
Confidence 776665543 34444444555566778888888888776422 1112233456778888888888888888876431
Q ss_pred ----------CCCC----------Chhh-----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011226 329 ----------CATY----------DIRV-----TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383 (490)
Q Consensus 329 ----------~~~~----------~~~~-----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 383 (490)
|.++ .... -..-+..+...|+...|...|..+... .+......+.....+.|
T Consensus 351 fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g 427 (450)
T d1qsaa1 351 FYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQ 427 (450)
T ss_dssp HHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCC
Confidence 1100 0000 112356677889999999999888764 25556667777788999
Q ss_pred CHHHHHHHHHHH
Q 011226 384 DMKLAVDCLEKA 395 (490)
Q Consensus 384 ~~~~A~~~~~~~ 395 (490)
.++.|+....+.
T Consensus 428 ~~~~aI~a~~~~ 439 (450)
T d1qsaa1 428 WWDLSVQATIAG 439 (450)
T ss_dssp CHHHHHHHHHHT
T ss_pred ChhHHHHHHHHH
Confidence 999998776655
|