Citrus Sinensis ID: 011258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
Protein Sequence
MESNLYFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEEcccccEEccEEcccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEEEcccccccccccHHcccccccccEEEEEEccccEEEEEEcccccccEEccccEEEccEEccccccccccccccccccccccccccccHHHHHHHHcccEEEccccccEEEccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEcccEEEEEEEEccEEEEEcccccccccccccccccccEEEEEcccccccccEEEEEcccccccccccccccEEEEEEEEccEEEEEEcccccEEEEEEEccEEEEEEEcccEEEEEEEEEcccccEEEcccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEcEEEEEEEccccccccEEccccHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEcccccccccccccccEEEEcccccccccccEEEEccccccccccccccEEcccccccccccccccccccccccccEEEEEEEEEccccccEEEEEEEEcccccccccccHHHHcccccccccEEEEEcccccEEEEEccccccccccHcHEEEccccccccccccccccccccccccccccccccHHHHHHHHHcccEEcccccccEEcccccccccccccEEEEEEEEEccccccccccccccccccHHHccccccccEEEEEccEEEEEEEEccEEEEEccccEEEEccccccccccEEEEEEcccccccccEEEEEEcccccccccccccEEEEEEEEEccEEEEEEEcccEEEEEEccccEEEEEEEccEEEEEEEEEccccccEcccccccccccHHHHHcccEEEEEEEEEEEccccccEEEEEEcccccEEEEccccccccccccccccHHHHHHccccccHHHHHccccccccccc
Coil and Loop (DISEMBL)
mesnlyfsqnlgfrtvehpdstlrpllytkrrHFNRVLVLASSaqtvggvsvnpvykptprnrelrtphsgyhfdgstrrffegwyfrvsiperkqSFCIIYsvenpafkkKLSSLEvaqhgprftgvGVQILgaddkymchyseessnfwgsrHELMLgntfradkgsqpptkevppqvrgSYLLLHGFSWQEFNRRVLEgfqvtplwhqgcihddgrtNFAETVKSARWeystrpvygwgnvgskqnstagwlaafpvfephwqicmagglstgwiewdgerfefqdapsyseknwggafprkwFWVQCNVFEGATGEValtaggglrqlpvldsfeNAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELkattkypgttlraptseaglapackdtcfGELTLQLWERRydgtkgkmiLDVTSDMAAlevgggpwfntwkaktatpellrrtlnvpvdvdglfgfvpffkppgl
Flexible Loop (DISEMBL)
mesnlyfsqnlgfrtvehpdstLRPLLYTKRRHFNRVLVLassaqtvggvsvnpvykptprnrelrtphsgyhfdgstrRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFradkgsqpptKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFgfvpffkppgl
Low Complexity Region (SEG)
MESNLYFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Disordered region (IsUnstruct)
*****YFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVY*************SGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGN*******************RGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFF*****
Disordered Region (DISOPRED)
*****YF***LG*****************************************************RTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSS****Q**PRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPG*
Disordered Region (DISEMBL)
MESNLYFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRA************PQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Disordered Region (DISPRO)
*********NLGFRTVEHPDSTLRPLLYTKR**FNRVL*L*********VSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESNLYFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	490	2.2.26 [Sep-21-2011]
Q94FY7	488	Tocopherol cyclase, chlor	yes	no	0.944	0.948	0.684	0.0
Q6K7V6	470	Probable tocopherol cycla	yes	no	0.861	0.897	0.679	0.0
Q94FY8	474	Probable tocopherol cycla	N/A	no	0.918	0.949	0.638	1e-179

>sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/482 (68%), Positives = 384/482 (79%), Gaps = 19/482 (3%)

Query: 14  RTVEHPDSTLRPLLYTKR--RHFNRVLVLASSAQT-VGGVSVNPVYKPTPRNRELRTPHS 70
           R V     +L P   TK   R  +RV    S+  +    +SV PVY PT  NRELRTPHS
Sbjct: 21  RPVSPLTRSLVPFRSTKLVPRSISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHS 80

Query: 71  GYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGV 130
           GYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPAF++ LS LEVA +GPRFTGVG 
Sbjct: 81  GYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGA 140

Query: 131 QILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGF 190
           QILGA+DKY+C Y ++S NFWG RHEL+LGNTF A  G++ P KEVPP+           
Sbjct: 141 QILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSAVPGAKAPNKEVPPE----------- 189

Query: 191 SWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNS 250
              EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ S
Sbjct: 190 ---EFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKS 246

Query: 251 TAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQ 310
           TAGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQ
Sbjct: 247 TAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQ 306

Query: 311 CNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQW 369
           CNVFEGATGEVALTAGGGLRQLP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S W
Sbjct: 307 CNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPW 366

Query: 370 GYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGT 429
           GYWY  AEN+ H+VEL+A T   GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+
Sbjct: 367 GYWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGS 426

Query: 430 KGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPP 488
           KGK+IL+  S MAA+E+GGGPWF TWK  T+ TPELL++ L VP+D++   G VPFFKPP
Sbjct: 427 KGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPP 486

Query: 489 GL 490
           GL
Sbjct: 487 GL 488

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6K7V6|TOCC_ORYSJ Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE1 PE=2 SV=1

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/437 (67%), Positives = 352/437 (80%), Gaps = 15/437 (3%)

Query: 54  PVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKL 113
           PVY PTPR+R LRTPHSGYH+DG+ R FFEGWYF+VSIPE +QSFC +YSVENP F+  +
Sbjct: 49  PVYAPTPRDRALRTPHSGYHYDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGM 108

Query: 114 SSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPT 173
           S L+   HG RFTGVG QILGADDKY+C ++E+S+NFWGSRHELMLGNTF  + GS PP 
Sbjct: 109 SDLDRVIHGSRFTGVGAQILGADDKYICQFTEKSNNFWGSRHELMLGNTFIPNNGSTPPE 168

Query: 174 KEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEY 233
            EVPPQ              EF+ RVLEGFQVTP+WHQG I DDGR+ +   V++ARWEY
Sbjct: 169 GEVPPQ--------------EFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEY 214

Query: 234 STRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSY 293
           STRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMAGGLSTGWIEWDGERFEF++APSY
Sbjct: 215 STRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSY 274

Query: 294 SEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILY 353
           SEKNWG  FPRKW+WVQCNVF GA+GEVALTA GGLR++ + +++E+ ++IGIHY+G  Y
Sbjct: 275 SEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGKFY 334

Query: 354 EFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTC 413
           EFVPW G VSW+I+ WG+W  + EN+ H+VE++ATTK PGT LRAPT EAGL PACKDTC
Sbjct: 335 EFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTC 394

Query: 414 FGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPV 473
           +G+L LQ+WE+R DG KGKMILD TS+MAALEVGGGPWFN WK  T + E++   +   V
Sbjct: 395 YGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGTQV 454

Query: 474 DVDGLFGFVPFFKPPGL 490
           DV+ LF  +PF KPPGL
Sbjct: 455 DVESLFP-IPFLKPPGL 470

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94FY8|TOCC_MAIZE Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1

 Score =  629 bits (1621), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 300/470 (63%), Positives = 366/470 (77%), Gaps = 20/470 (4%)

Query: 26  LLYTKRRHFNRVLVLASSAQTVGG-----VSVNPVYKPTPRNRELRTPHSGYHFDGSTRR 80
           L  + RRH  R +V  +++ +V        +  P+Y PTP++R LRTPHSGYHFDG+ R 
Sbjct: 20  LPRSSRRHCPRGVVPRAASSSVSSFTSPSAAAAPIYTPTPQDRSLRTPHSGYHFDGTARP 79

Query: 81  FFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYM 140
           FFEGWYF+VSIPE +QSFC +YSVENP F+  +S L+   + PRFTGVG QILGADDKY+
Sbjct: 80  FFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDKLLYRPRFTGVGAQILGADDKYI 139

Query: 141 CHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVL 200
           C +SE+S+NFWGSRHELMLGNTF ++K S PP  EVPPQ              +F+RRVL
Sbjct: 140 CQFSEKSNNFWGSRHELMLGNTFISNKESTPPQGEVPPQ--------------DFSRRVL 185

Query: 201 EGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPV 260
           EG QVTP+WHQG I DDGR+N+   V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP 
Sbjct: 186 EGLQVTPIWHQGFIRDDGRSNYVPNVQTARWEYSTRPVYGWGDVKSKQLSTAGWLAAFPF 245

Query: 261 FEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGE 320
           FEPHWQICMA GLSTGWIEWDGERFEF++APSYSEKNWGG FPRKW+W+QCNVF GA+GE
Sbjct: 246 FEPHWQICMARGLSTGWIEWDGERFEFENAPSYSEKNWGGGFPRKWYWIQCNVFPGASGE 305

Query: 321 VALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQT 380
           V+LTA GGLR++ + D++E+ ++IGIHY+G  +EFVPW G VSW+I  WG W  + EN+T
Sbjct: 306 VSLTAAGGLRKIGLGDTYESPSLIGIHYEGQFFEFVPWTGTVSWDIGLWGLWKMSGENKT 365

Query: 381 HMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSD 440
           H+VE++ATT   GT LRAPT EAGL PACKDTC+G+L LQLWE++YDG+KG+MILD TS+
Sbjct: 366 HLVEIEATTAESGTALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSN 425

Query: 441 MAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 490
           MAALEVGGGPWFN WK  T   E++   +  PVDV+ L   +PF KPPGL
Sbjct: 426 MAALEVGGGPWFNGWKGTTVVNEVVNNIVGTPVDVESLLP-IPFLKPPGL 474

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	490
219842174	508	tocopherol cyclase [Hevea brasiliensis]	0.959	0.925	0.719	0.0
255551000	505	Tocopherol cyclase, chloroplast precurso	0.959	0.930	0.691	0.0
33188419	515	tocopherol cyclase [Eucalyptus gunnii]	0.861	0.819	0.775	0.0
225429977	502	PREDICTED: tocopherol cyclase, chloropla	0.889	0.868	0.751	0.0
356507907	489	PREDICTED: tocopherol cyclase, chloropla	0.936	0.938	0.700	0.0
356515597	480	PREDICTED: tocopherol cyclase, chloropla	0.910	0.929	0.713	0.0
388502842	479	unknown [Medicago truncatula]	0.916	0.937	0.709	0.0
159792908	494	chloroplast tocopherol cyclase [Sesamum	0.871	0.864	0.735	0.0
377657553	490	tocopherol cyclase [Brassica napus]	0.873	0.873	0.738	0.0
80971684	483	tocopherol cyclase [Helianthus annuus]	0.957	0.971	0.687	0.0

>gi|219842174|dbj|BAH10644.1| tocopherol cyclase [Hevea brasiliensis]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/510 (71%), Positives = 411/510 (80%), Gaps = 40/510 (7%)

Query: 6   YFSQNLGFRTVEHPDSTLRPLLYTK--------------RRHFNRVLVLASSAQ------ 45
           +FS N+GF  + +P STL+P    +              R   +R+LV  S         
Sbjct: 14  HFSSNMGFPAL-NPCSTLKPFRLNQSSVGIHWRSLQVGFRSSRSRLLVSNSVTDRQTSTV 72

Query: 46  ----TVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCII 101
               T G  S +PVY  TP NRELRTPHSGYHFDG+TR+FFEGWYF+VSIPERK+SFC +
Sbjct: 73  ERGGTEGVASASPVYVATPPNRELRTPHSGYHFDGTTRQFFEGWYFKVSIPERKESFCFM 132

Query: 102 YSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGN 161
           YSVENPAF+KKLS LEVAQHGPR TGVG QILGA DKY+C YSEES NFWGSRHELMLGN
Sbjct: 133 YSVENPAFRKKLSPLEVAQHGPRSTGVGAQILGASDKYICQYSEESQNFWGSRHELMLGN 192

Query: 162 TFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTN 221
           TF A+KG QPP+KEVPPQ              EFNR V EGFQVTPLW+QG I DDGR++
Sbjct: 193 TFVAEKGMQPPSKEVPPQ--------------EFNRMVSEGFQVTPLWNQGFIRDDGRSD 238

Query: 222 FAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWD 281
           + +TVK+ARWEYSTRPVYGWGNVGSKQ STAGWLAAFPVFEPHWQICMA GLSTGWIEWD
Sbjct: 239 YVKTVKTARWEYSTRPVYGWGNVGSKQQSTAGWLAAFPVFEPHWQICMAAGLSTGWIEWD 298

Query: 282 GERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFEN 340
           GERFEF+DAPSYSEKNWGG FPRKWFW QCN FEGA+GEVALT GGGLRQLP L ++FEN
Sbjct: 299 GERFEFKDAPSYSEKNWGGGFPRKWFWAQCNTFEGASGEVALTVGGGLRQLPGLTETFEN 358

Query: 341 AAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPT 400
           AA+IG+HYDGI YEFVPW GVV+WEIS WGYW+  AEN+TH+VEL+ATTK PGTTLRAPT
Sbjct: 359 AALIGVHYDGIFYEFVPWKGVVTWEISPWGYWFVTAENETHLVELEATTKDPGTTLRAPT 418

Query: 401 SEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA 460
           +EAGLAPACKDTC+G L L+LWERRYDG+KGK+ILDVTSDMAA+EVGGGPWFNTWK KT 
Sbjct: 419 TEAGLAPACKDTCYGVLKLKLWERRYDGSKGKIILDVTSDMAAVEVGGGPWFNTWKGKTT 478

Query: 461 TPELLRRTLNVPVDVDGLFGFVPFFKPPGL 490
           TPELL R L VP+DVDG+F F+P FKPPGL
Sbjct: 479 TPELLSRALRVPLDVDGIFNFLPLFKPPGL 508

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551000|ref|XP_002516548.1| Tocopherol cyclase, chloroplast precursor, putative [Ricinus communis] gi|223544368|gb|EEF45889.1| Tocopherol cyclase, chloroplast precursor, putative [Ricinus communis]

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/505 (69%), Positives = 404/505 (80%), Gaps = 35/505 (6%)

Query: 7   FSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVL----------------VLASSAQ----T 46
           FS NLGFR   +P ST +P   +  R  N+                    ++SA+     
Sbjct: 15  FSSNLGFRANINPSSTFKPFRCSHFRPLNKAAGAPSSRLSLSNSLTNSDTSTSAERGRMI 74

Query: 47  VGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVEN 106
               SV+P+Y PTP NR+LRTPHSGYHFDG+ R+FFEGWYFRVSIPERKQSFC +Y+VEN
Sbjct: 75  ESASSVSPLYVPTPSNRQLRTPHSGYHFDGTARKFFEGWYFRVSIPERKQSFCFMYAVEN 134

Query: 107 PAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRAD 166
           PAF+ K++ LE+AQHGPR TGV  QILGADDKY+C  SEES NFWGSRHEL+LG+TF  +
Sbjct: 135 PAFRSKMTPLEIAQHGPRSTGVMAQILGADDKYICQCSEESQNFWGSRHELVLGSTFVPE 194

Query: 167 KGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETV 226
           KG QPPTKEVPP+              EFN+RV EGFQVTPLWHQG I DDGR+++ ETV
Sbjct: 195 KGMQPPTKEVPPE--------------EFNKRVSEGFQVTPLWHQGFIRDDGRSDYVETV 240

Query: 227 KSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFE 286
           K+A WEYSTRP+YGWG+V SKQ STAGWLAA PVFEPHWQICMAGGLSTGWIEWDGER+E
Sbjct: 241 KTASWEYSTRPIYGWGDVESKQKSTAGWLAALPVFEPHWQICMAGGLSTGWIEWDGERYE 300

Query: 287 FQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIG 345
           FQDAPSYSEKNWGG FPRKWFWVQCNVFEGATGE+ALT GGGLRQLP L ++FENAA++G
Sbjct: 301 FQDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEIALTVGGGLRQLPGLTENFENAALVG 360

Query: 346 IHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGL 405
           +HYDG  YEFVPWNGVV+WE+S WG+W+F AEN+TH+VEL+ATTK PGT L APT+E GL
Sbjct: 361 VHYDGNFYEFVPWNGVVNWEVSPWGHWFFTAENETHLVELEATTKDPGTPLLAPTAEVGL 420

Query: 406 APACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELL 465
           APAC+DTCF +L LQ+WERRYDG+KGK+ILDVTSDMAA+EVGGGPWFNTWK KT+TPELL
Sbjct: 421 APACRDTCFADLKLQMWERRYDGSKGKLILDVTSDMAAVEVGGGPWFNTWKGKTSTPELL 480

Query: 466 RRTLNVPVDVDGLFGFVPFFKPPGL 490
            R L VPVD+D +  F+P FKPPGL
Sbjct: 481 SRALQVPVDMDEILSFLPLFKPPGL 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33188419|gb|AAP97931.1| tocopherol cyclase [Eucalyptus gunnii]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/437 (77%), Positives = 382/437 (87%), Gaps = 15/437 (3%)

Query: 55  VYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLS 114
           VY PTP NRE RTPHSGYH+DGS+R+FFEGWYF+VSIPE +QSFC +YSVENPAF KKLS
Sbjct: 93  VYVPTPPNRESRTPHSGYHWDGSSRKFFEGWYFKVSIPESRQSFCFMYSVENPAFPKKLS 152

Query: 115 SLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTK 174
           +LEVAQ+GPR+TGVG QILGADDKY+C +SEES+NFWGSRHEL+LGNTF A+K ++PP K
Sbjct: 153 ALEVAQYGPRYTGVGAQILGADDKYICQFSEESANFWGSRHELILGNTFMAEKDAKPPNK 212

Query: 175 EVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYS 234
           EVPPQ              EFN+RV EGFQV+PLWHQG I DDGR+++ ETVK+ARWEYS
Sbjct: 213 EVPPQ--------------EFNKRVAEGFQVSPLWHQGFIRDDGRSDYVETVKTARWEYS 258

Query: 235 TRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYS 294
           TRPVYGWGN GS+Q STAGWLAAFPVFEPHWQICMAGGLSTGWIEW+GERFEFQDAPSYS
Sbjct: 259 TRPVYGWGNAGSQQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWEGERFEFQDAPSYS 318

Query: 295 EKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILY 353
           EKNWGGAFPRKWFWVQCNVFEGA GEVALTA GGLRQLP L ++FENAA+IG+HYDGI Y
Sbjct: 319 EKNWGGAFPRKWFWVQCNVFEGAKGEVALTAAGGLRQLPGLTETFENAALIGVHYDGIFY 378

Query: 354 EFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTC 413
           EFVPWNGVVSWE++ WG WY  A+N+TH V ++ATTK  GTTLRAPT EAGLAPAC DTC
Sbjct: 379 EFVPWNGVVSWEVAPWGSWYMEADNETHKVVVEATTKDRGTTLRAPTVEAGLAPACNDTC 438

Query: 414 FGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPV 473
           FG+L LQ+WERRYDG+KGK+ILDVTS+MAA+E+GGGPWF+TWK KT+TPELL R L VPV
Sbjct: 439 FGDLKLQIWERRYDGSKGKLILDVTSNMAAVEIGGGPWFSTWKGKTSTPELLSRALRVPV 498

Query: 474 DVDGLFGFVPFFKPPGL 490
           DVDG FG  PF KPPGL
Sbjct: 499 DVDGFFGLAPFLKPPGL 515

Source: Eucalyptus gunnii

Species: Eucalyptus gunnii

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429977|ref|XP_002281424.1| PREDICTED: tocopherol cyclase, chloroplastic [Vitis vinifera] gi|296081864|emb|CBI20869.3| unnamed protein product [Vitis vinifera]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/451 (75%), Positives = 385/451 (85%), Gaps = 15/451 (3%)

Query: 41  ASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCI 100
           A S +T    SV+P+Y PTP NRELRTPHSGYHFDGS R+FFEGWYF+VSIPE+KQSFC 
Sbjct: 66  AESGETESLGSVSPIYVPTPSNRELRTPHSGYHFDGSPRQFFEGWYFKVSIPEQKQSFCF 125

Query: 101 IYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLG 160
           +YSVENPAF+KKL + E  Q+GPRFTGVG QILGADDKY+C +SEES+NFWG RHELMLG
Sbjct: 126 MYSVENPAFQKKLGTFEELQYGPRFTGVGAQILGADDKYICQFSEESTNFWGCRHELMLG 185

Query: 161 NTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRT 220
           +TF   K  +PP KEVPP+              EFNRRV+EGFQVTPLWHQG I DDGR+
Sbjct: 186 HTFVGRKDLRPPNKEVPPE--------------EFNRRVIEGFQVTPLWHQGFIRDDGRS 231

Query: 221 NFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEW 280
           N+ +TVK+ARWEYSTRP+YGWGNVGSKQ STAGWLAAFPVFEPHWQICMAGGLSTGWIEW
Sbjct: 232 NYVDTVKTARWEYSTRPIYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEW 291

Query: 281 DGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFE 339
           DGER+EF++APSYSEKNWGG FPRKWFWVQCN FEGA GEV+LTA GGLR++P L + FE
Sbjct: 292 DGERYEFENAPSYSEKNWGGGFPRKWFWVQCNAFEGADGEVSLTAAGGLRKIPGLTEVFE 351

Query: 340 NAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAP 399
           NAA++G+HYDGI YEFVPWNGVVSWEI+QWGYWY +AEN++HMVEL ATTK PGTTLRAP
Sbjct: 352 NAALVGVHYDGIFYEFVPWNGVVSWEINQWGYWYISAENESHMVELVATTKDPGTTLRAP 411

Query: 400 TSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKT 459
           T+EAGLAPACKD C G L LQ+W+R ++G+KGKMILDVTS+MAA+EVGGGPWFNTWK KT
Sbjct: 412 TTEAGLAPACKDNCSGALKLQIWKRTFNGSKGKMILDVTSNMAAVEVGGGPWFNTWKGKT 471

Query: 460 ATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 490
           A PEL+R  L VPVD D +FG  PFFKPPGL
Sbjct: 472 AAPELVRLALQVPVDEDAIFGLAPFFKPPGL 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507907|ref|XP_003522704.1| PREDICTED: tocopherol cyclase, chloroplastic-like [Glycine max]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/474 (70%), Positives = 390/474 (82%), Gaps = 15/474 (3%)

Query: 18  HPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGS 77
           H  S+    L+  R   +  + + +  +     SV P Y PT  NR+LRTPHSGYHFDG+
Sbjct: 30  HFPSSSTSTLHLARNSVSDTVPIQNEEKEQTLSSVKPTYSPTLPNRDLRTPHSGYHFDGT 89

Query: 78  TRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADD 137
           TR+FFEGWYF+VSIPER+QSFC +YSVE+P+F+K L+ LE+AQ+GPRFTGVG QILGADD
Sbjct: 90  TRKFFEGWYFKVSIPERRQSFCFMYSVESPSFRKPLTPLELAQYGPRFTGVGAQILGADD 149

Query: 138 KYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNR 197
           KY+C YS +S  FWGSRHELMLGNTF +++ S+PP KEVPPQ              EFN 
Sbjct: 150 KYICQYSPQSQFFWGSRHELMLGNTFVSNQNSKPPNKEVPPQ--------------EFND 195

Query: 198 RVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAA 257
           RVLEGFQVTPLWHQG I DDGR+N+ ETVK+ARWEYSTRPVYGWG+VGS Q STAGWLAA
Sbjct: 196 RVLEGFQVTPLWHQGFIRDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAA 255

Query: 258 FPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGA 317
           FPVFEPHWQICMAGGLSTGWIEWDGER EF +APSYSEKNWGG FPRKWFWVQCNVFEGA
Sbjct: 256 FPVFEPHWQICMAGGLSTGWIEWDGERIEFDNAPSYSEKNWGGGFPRKWFWVQCNVFEGA 315

Query: 318 TGEVALTAGGGLRQLP-VLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAA 376
           +GE+ALTA GGLRQ+P + ++FENAA+IGIHY G  YEFVPWNGVV+WE++ WGYW+ +A
Sbjct: 316 SGEIALTAAGGLRQIPGITETFENAALIGIHYGGNFYEFVPWNGVVNWEVTTWGYWFMSA 375

Query: 377 ENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILD 436
           +N  ++VEL+ATT+ PGTTLRAPT+EAG APACKDTCFG L LQ+WERRYDG+KGK+ILD
Sbjct: 376 DNGKYVVELEATTEDPGTTLRAPTAEAGFAPACKDTCFGNLKLQMWERRYDGSKGKIILD 435

Query: 437 VTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 490
           V+S+MAALEVGGGPWFNTWK KT+TP  L R L +P+DV+G+F  VP FKPPGL
Sbjct: 436 VSSNMAALEVGGGPWFNTWKGKTSTPAALSRVLELPIDVEGIFNPVPLFKPPGL 489

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515597|ref|XP_003526485.1| PREDICTED: tocopherol cyclase, chloroplastic-like [Glycine max]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/461 (71%), Positives = 387/461 (83%), Gaps = 15/461 (3%)

Query: 31  RRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVS 90
           R  F+  + + +  +     SV P Y PTP NR LRTPHSGYHFDG+TR+FFEGWYF++S
Sbjct: 34  RSFFSDTVPIDNKEKEQLVTSVKPTYSPTPPNRHLRTPHSGYHFDGTTRKFFEGWYFKLS 93

Query: 91  IPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNF 150
           IPER+QSFC +YSVE+P+F+K L+ LEVAQ+G RFTGVG QILGADDKY+C +S ES  F
Sbjct: 94  IPERRQSFCFMYSVESPSFRKPLTPLEVAQYGSRFTGVGAQILGADDKYICQFSPESQFF 153

Query: 151 WGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWH 210
           WGSRHELMLGNTF  ++ S+PP KEVPPQ              EFN RVLEGFQV+PLWH
Sbjct: 154 WGSRHELMLGNTFVPNQNSKPPNKEVPPQ--------------EFNDRVLEGFQVSPLWH 199

Query: 211 QGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMA 270
           QG I DDGR+N+ ETVK+ARWEYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQICMA
Sbjct: 200 QGFIRDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMA 259

Query: 271 GGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLR 330
           GGLSTGWIEWDG+R EF +APSYSEKNWGG FPRKWFWVQCNVFEGA+GE+ALTA GGLR
Sbjct: 260 GGLSTGWIEWDGKRIEFDNAPSYSEKNWGGGFPRKWFWVQCNVFEGASGEIALTAAGGLR 319

Query: 331 QLP-VLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATT 389
           Q+P + ++FENAA+IGIHY GI YEFVPWNGVV+WE++ WGYW+ +A+N  ++VE++ATT
Sbjct: 320 QIPGIAETFENAALIGIHYGGIFYEFVPWNGVVNWEVTTWGYWFMSADNGRYVVEIEATT 379

Query: 390 KYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGG 449
           + PGTTLRAPT+EAGLAPACKDTCFG+L LQ+WERRYDG+KGK+ILDV+S+MAALEVGGG
Sbjct: 380 EDPGTTLRAPTAEAGLAPACKDTCFGDLKLQMWERRYDGSKGKIILDVSSNMAALEVGGG 439

Query: 450 PWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 490
           PWFNTWK KT+TP  L R L +P+DV+G+F  VP FKPPGL
Sbjct: 440 PWFNTWKGKTSTPAALSRVLELPIDVEGIFNPVPLFKPPGL 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502842|gb|AFK39487.1| unknown [Medicago truncatula]

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/464 (70%), Positives = 387/464 (83%), Gaps = 15/464 (3%)

Query: 28  YTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYF 87
           +   R F  ++   S  +     S  P+Y PTP NR+LRTPHSGYHFDG+ R+FFEGWYF
Sbjct: 30  FHHNRSFKLIIAHNSHTEQQQSQSSKPIYSPTPPNRQLRTPHSGYHFDGTARKFFEGWYF 89

Query: 88  RVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEES 147
           +VSIPE++QSFC +YSVENPAF+K+LS+LE+AQ+GPRFTGVG QILGADDKY+C Y+ +S
Sbjct: 90  KVSIPEKRQSFCFMYSVENPAFRKELSTLELAQYGPRFTGVGAQILGADDKYICQYTPQS 149

Query: 148 SNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTP 207
            NFWGSR+ELMLGNTF A + S+PP KEVPP+              EFN +VLEGFQVTP
Sbjct: 150 PNFWGSRNELMLGNTFAAKQNSKPPNKEVPPK--------------EFNDKVLEGFQVTP 195

Query: 208 LWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQI 267
           LW+QG I DDG++++ ETVK+ RWEYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQI
Sbjct: 196 LWNQGFICDDGKSDYVETVKTTRWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQI 255

Query: 268 CMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGG 327
           CMAGGLSTGWIEWDGER EF++APSYSEKNWGGAFPRKWFW QCNVFEGA+GE+ALTA G
Sbjct: 256 CMAGGLSTGWIEWDGERIEFENAPSYSEKNWGGAFPRKWFWAQCNVFEGASGEIALTAAG 315

Query: 328 GLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELK 386
           GLRQ+P L ++FENAA+IGIHY G  YEFVPWNGVVSWE++ WGYW+ +A+N  ++VEL+
Sbjct: 316 GLRQIPGLTETFENAALIGIHYGGKFYEFVPWNGVVSWEVATWGYWFMSADNGNYVVELE 375

Query: 387 ATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEV 446
           ATT+ PGTTLRAPTSEAGL+ ACKDTCFG L L+LWERRYDG+KGK+ILDVTSDMAALEV
Sbjct: 376 ATTEDPGTTLRAPTSEAGLSQACKDTCFGILKLKLWERRYDGSKGKIILDVTSDMAALEV 435

Query: 447 GGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 490
           GGGPWFNTWK KT+TP +  R + +PVDVDGL+   P FKPPGL
Sbjct: 436 GGGPWFNTWKGKTSTPPVFSRAIGLPVDVDGLYNLFPLFKPPGL 479

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|159792908|gb|ABW98674.1| chloroplast tocopherol cyclase [Sesamum indicum]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/442 (73%), Positives = 376/442 (85%), Gaps = 15/442 (3%)

Query: 50  VSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAF 109
           V V PVY+PTP NR +RTPHSGYHFDG++R+FFEGWYF+VSIPE +QSFC +YSVENPAF
Sbjct: 67  VHVEPVYEPTPPNRPIRTPHSGYHFDGTSRKFFEGWYFKVSIPECRQSFCFMYSVENPAF 126

Query: 110 KKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGS 169
           +KKLS+LE  Q+GPRFTGVG QILGADDKY+C Y+EES NFWG+R EL LGNTF A +  
Sbjct: 127 RKKLSTLEEVQYGPRFTGVGAQILGADDKYICQYTEESQNFWGNRDELTLGNTFVAQEKM 186

Query: 170 QPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSA 229
           QPP KE+PPQ              EFNRRV+EGFQVTPLWHQG I DDGRTN+ E VK+A
Sbjct: 187 QPPKKEIPPQ--------------EFNRRVVEGFQVTPLWHQGFIRDDGRTNYTEIVKTA 232

Query: 230 RWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQD 289
           RW YSTRPVYGWGNVGSKQ STAGWLAAFPVFEPHWQICMAGGLSTGWIEWD + +EF++
Sbjct: 233 RWAYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDDKLYEFKN 292

Query: 290 APSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHY 348
           APSYSEKNWG  FPRKWFWVQCNVFEGA GEVALTA GGLRQ+P L ++FENAA+ G+HY
Sbjct: 293 APSYSEKNWGAGFPRKWFWVQCNVFEGADGEVALTAAGGLRQVPGLSETFENAALFGVHY 352

Query: 349 DGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPA 408
           DG  YEFVPWNGVV+WEI+ WG+W  +AEN+ + VEL+ATTK PGTTLRAPT+EAGLAP 
Sbjct: 353 DGAFYEFVPWNGVVNWEIAPWGHWSISAENEMYTVELEATTKDPGTTLRAPTTEAGLAPV 412

Query: 409 CKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRT 468
           CKDTCF +L L+LWERRYDG++GK+ILDVTS+MAA+EVGGGPWF TWK KT TPE+++R 
Sbjct: 413 CKDTCFADLRLRLWERRYDGSEGKVILDVTSNMAAVEVGGGPWFTTWKGKTQTPEIIKRV 472

Query: 469 LNVPVDVDGLFGFVPFFKPPGL 490
           + +PVDV+G+FG  PF +PPGL
Sbjct: 473 VGLPVDVEGMFGLAPFLRPPGL 494

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657553|gb|AFB74210.1| tocopherol cyclase [Brassica napus]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/444 (73%), Positives = 377/444 (84%), Gaps = 16/444 (3%)

Query: 49  GVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPA 108
            +SV PVY PTP NRELRTPHSGYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPA
Sbjct: 61  AISVKPVYVPTPPNRELRTPHSGYHFDGTARKFFEGWYFRVSIPEKRESFCFMYSVENPA 120

Query: 109 FKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKG 168
           F+K+LS LEV  +GPRFTGVG QILGA+DKY+C Y+E+S NFWG RHEL+LGNTF A  G
Sbjct: 121 FRKRLSPLEVGLYGPRFTGVGAQILGANDKYLCQYTEDSHNFWGDRHELVLGNTFSAMPG 180

Query: 169 SQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKS 228
           ++ P KEVPP+              EFNRRV EGFQ TP WHQG I DDGRT++AETVKS
Sbjct: 181 ARSPDKEVPPE--------------EFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKS 226

Query: 229 ARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQ 288
           ARWEYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAGGLSTGWIEW  ERFEF+
Sbjct: 227 ARWEYSTRPVYGWGDVGTKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWIEWGDERFEFR 286

Query: 289 DAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIH 347
           DAPSYSEKNWGG FPRKWFWVQCNVFEGA GE+ALTA GGLRQLP L ++FENAA++ +H
Sbjct: 287 DAPSYSEKNWGGGFPRKWFWVQCNVFEGAKGEIALTAAGGLRQLPGLTETFENAALVCVH 346

Query: 348 YDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAP 407
           YDG LYEFVPWNGVVSWE+S WGYWY  AEN+THMVEL+A T   GT LRAPTSEAGLA 
Sbjct: 347 YDGKLYEFVPWNGVVSWEMSPWGYWYMTAENETHMVELEARTNEAGTPLRAPTSEAGLAT 406

Query: 408 ACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLR 466
           ACKD+C+GEL LQ+WERRYDG+KGK+I++  S MAA+E+GGGPWF TWK  T+ TPELL+
Sbjct: 407 ACKDSCYGELKLQIWERRYDGSKGKVIMEAKSSMAAVEIGGGPWFGTWKGDTSNTPELLK 466

Query: 467 RTLNVPVDVDGLFGFVPFFKPPGL 490
           R+L VP+D++ +FG+VPFFKPPGL
Sbjct: 467 RSLQVPLDLESVFGWVPFFKPPGL 490

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|80971684|gb|ABB52813.1| tocopherol cyclase [Helianthus annuus]

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/487 (68%), Positives = 385/487 (79%), Gaps = 18/487 (3%)

Query: 7   FSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNRELR 66
           FS  L      +  S++R L + + R  +         +      VNPVY PTP NR LR
Sbjct: 12  FSSLLASSKPNNVKSSVR-LKHERNRRLSAAKTDVYGVELQSQEIVNPVYVPTPTNRPLR 70

Query: 67  TPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFT 126
            PHSGYHFDG+TR+FFEGWYF+VSIPE++QSFC +YSVENPAFKK L+ LE  QHGPRFT
Sbjct: 71  PPHSGYHFDGTTRKFFEGWYFKVSIPEQRQSFCFMYSVENPAFKKDLNILEQLQHGPRFT 130

Query: 127 GVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLL 186
           GVG QILGA DKY+C YS+ES NFWGSRHELMLGN+F    G QPP  EVPPQV      
Sbjct: 131 GVGAQILGAHDKYICQYSKESHNFWGSRHELMLGNSFSVQTGKQPPNSEVPPQV------ 184

Query: 187 LHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGS 246
                   FN+RV+EGFQVTPLWHQG I DDGRT++AETVK+ARWEYSTRPVYGWG+VGS
Sbjct: 185 --------FNQRVIEGFQVTPLWHQGFIRDDGRTSYAETVKTARWEYSTRPVYGWGDVGS 236

Query: 247 KQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKW 306
           KQ STAGWLAAFPVFEPHWQICMAGGLSTGWIEW  ER+EF+DAPSY EKNWGG FPRKW
Sbjct: 237 KQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWGDERYEFEDAPSYCEKNWGGGFPRKW 296

Query: 307 FWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWE 365
           FWVQCNVF+GA+GEV LT GGGLRQLP L ++FENAA+IG+H+ GI YEFVPWNGVV WE
Sbjct: 297 FWVQCNVFKGASGEVGLTCGGGLRQLPGLNETFENAALIGVHHGGIFYEFVPWNGVVEWE 356

Query: 366 ISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWER- 424
           +++WGYW+  A+N+TH VEL+A+TK PGTTLRAPT+EAGLAPACKDTCF  LTL+LWE+ 
Sbjct: 357 VAEWGYWHVTAQNETHKVELEASTKDPGTTLRAPTTEAGLAPACKDTCFAHLTLKLWEKG 416

Query: 425 -RYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVP 483
                  GK+ILDVTS+MAA+EVGGGPWFNTWK KT TPE++ R LN+PVDVDG+ G  P
Sbjct: 417 SAAAAADGKLILDVTSNMAAVEVGGGPWFNTWKGKTYTPEVINRALNLPVDVDGILGSFP 476

Query: 484 FFKPPGL 490
             KPPGL
Sbjct: 477 LLKPPGL 483

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	490
TAIR|locus:2125657	488	VTE1 "VITAMIN E DEFICIENT 1" [	0.944	0.948	0.684	3.4e-187
UNIPROTKB|Q6K7V6	470	VTE1 "Probable tocopherol cycl	0.936	0.976	0.645	7.5e-176

TAIR|locus:2125657 VTE1 "VITAMIN E DEFICIENT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1815 (644.0 bits), Expect = 3.4e-187, P = 3.4e-187
 Identities = 330/482 (68%), Positives = 384/482 (79%)

Query:    14 RTVEHPDSTLRPLLYTKR--RHFNRVLVLASSAQT-VGGVSVNPVYKPTPRNRELRTPHS 70
             R V     +L P   TK   R  +RV    S+  +    +SV PVY PT  NRELRTPHS
Sbjct:    21 RPVSPLTRSLVPFRSTKLVPRSISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHS 80

Query:    71 GYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGV 130
             GYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPAF++ LS LEVA +GPRFTGVG 
Sbjct:    81 GYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGA 140

Query:   131 QILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGF 190
             QILGA+DKY+C Y ++S NFWG RHEL+LGNTF A  G++ P KEVPP+           
Sbjct:   141 QILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSAVPGAKAPNKEVPPE----------- 189

Query:   191 SWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNS 250
                EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ S
Sbjct:   190 ---EFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKS 246

Query:   251 TAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQ 310
             TAGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQ
Sbjct:   247 TAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQ 306

Query:   311 CNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQW 369
             CNVFEGATGEVALTAGGGLRQLP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S W
Sbjct:   307 CNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPW 366

Query:   370 GYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGT 429
             GYWY  AEN+ H+VEL+A T   GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+
Sbjct:   367 GYWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGS 426

Query:   430 KGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPP 488
             KGK+IL+  S MAA+E+GGGPWF TWK  T+ TPELL++ L VP+D++   G VPFFKPP
Sbjct:   427 KGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPP 486

Query:   489 GL 490
             GL
Sbjct:   487 GL 488

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0009706 "chloroplast inner membrane" evidence=TAS

GO:0009976 "tocopherol cyclase activity" evidence=IMP;IDA

GO:0010189 "vitamin E biosynthetic process" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009644 "response to high light intensity" evidence=IEP

GO:0006631 "fatty acid metabolic process" evidence=IGI

GO:0015994 "chlorophyll metabolic process" evidence=IGI

GO:0016122 "xanthophyll metabolic process" evidence=IMP

GO:0010287 "plastoglobule" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

UNIPROTKB|Q6K7V6 VTE1 "Probable tocopherol cyclase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1708 (606.3 bits), Expect = 7.5e-176, P = 7.5e-176
 Identities = 308/477 (64%), Positives = 365/477 (76%)

Query:    16 VEHPDSTLRPLLYTKRRHFNRVLV--LASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYH 73
             V  P     P     RRH  R L    ASS+ +       PVY PTPR+R LRTPHSGYH
Sbjct:    10 VSFPRPAPPPRRCAPRRH-RRALAPRAASSSPSPSTAVAAPVYAPTPRDRALRTPHSGYH 68

Query:    74 FDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQIL 133
             +DG+ R FFEGWYF+VSIPE +QSFC +YSVENP F+  +S L+   HG RFTGVG QIL
Sbjct:    69 YDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDRVIHGSRFTGVGAQIL 128

Query:   134 GADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQ 193
             GADDKY+C ++E+S+NFWGSRHELMLGNTF  + GS PP  EVPPQ              
Sbjct:   129 GADDKYICQFTEKSNNFWGSRHELMLGNTFIPNNGSTPPEGEVPPQ-------------- 174

Query:   194 EFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAG 253
             EF+ RVLEGFQVTP+WHQG I DDGR+ +   V++ARWEYSTRPVYGWG+V SKQ STAG
Sbjct:   175 EFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSKQKSTAG 234

Query:   254 WLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNV 313
             WLAAFP FEPHWQICMAGGLSTGWIEWDGERFEF++APSYSEKNWG  FPRKW+WVQCNV
Sbjct:   235 WLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNV 294

Query:   314 FEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWY 373
             F GA+GEVALTA GGLR++ + +++E+ ++IGIHY+G  YEFVPW G VSW+I+ WG+W 
Sbjct:   295 FSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWK 354

Query:   374 FAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKM 433
              + EN+ H+VE++ATTK PGT LRAPT EAGL PACKDTC+G+L LQ+WE+R DG KGKM
Sbjct:   355 LSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGKM 414

Query:   434 ILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 490
             ILD TS+MAALEVGGGPWFN WK  T + E++   +   VDV+ LF  +PF KPPGL
Sbjct:   415 ILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGTQVDVESLFP-IPFLKPPGL 470


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.454    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      490       490   0.00082  119 3  11 22  0.39    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  633 (67 KB)
  Total size of DFA:  366 KB (2177 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.92u 0.09s 38.01t   Elapsed:  00:00:03
  Total cpu time:  37.92u 0.09s 38.01t   Elapsed:  00:00:03
  Start:  Tue May 21 04:35:58 2013   End:  Tue May 21 04:36:01 2013

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94FY7	TOCC_ARATH	No assigned EC number	0.6846	0.9448	0.9487	yes	no
Q6K7V6	TOCC_ORYSJ	No assigned EC number	0.6796	0.8612	0.8978	yes	no
Q94FY8	TOCC_MAIZE	No assigned EC number	0.6382	0.9183	0.9493	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032449001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (502 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00013955001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (345 aa)	•		•	•		•	•		0.989
	HGGT	SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (445 aa)	•		•			•	•		0.963
	GSVIVG00032719001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (373 aa)	•		•			•	•		0.961
	GSVIVG00020095001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (340 aa)						•	•		0.920
	GSVIVG00023813001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (340 aa)						•	•		0.920
	GSVIVG00025454001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (323 aa)	•		•			•	•		0.695
	GSVIVG00022014001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (291 aa)			•	•					0.527
	GSVIVG00019398001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (323 aa)			•	•					0.525
	GSVIVG00011274001	SubName- Full=Chromosome undetermined scaffold_2411, whole genome shotgun sequence; Flags- Frag [...] (182 aa)			•				•		0.512
	GSVIVG00038227001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (216 aa)			•				•		0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	490
PLN02818	403	PLN02818, PLN02818, tocopherol cyclase	0.0
pfam14249	331	pfam14249, Tocopherol_cycl, Tocopherol cyclase	0.0

>gnl|CDD|215438 PLN02818, PLN02818, tocopherol cyclase

 Score =  695 bits (1796), Expect = 0.0
 Identities = 281/418 (67%), Positives = 330/418 (78%), Gaps = 17/418 (4%)

Query: 64  ELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGP 123
            LRTPHSGYHFDG+ RRFFEGWYF+VS+PE KQSF  +YS+E+PAF++++S LE   HG 
Sbjct: 1   ALRTPHSGYHFDGTPRRFFEGWYFKVSLPEVKQSFAFMYSIEDPAFRERMSGLEELLHGS 60

Query: 124 RFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGS 183
           RFTGVG QILG DDKY+C ++E+S+ FWGSRHEL LGNTF    GS PP  EVPP     
Sbjct: 61  RFTGVGAQILGPDDKYLCQFTEDSTKFWGSRHELALGNTFAPKNGSTPPRSEVPPD---- 116

Query: 184 YLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGN 243
                     EF RRV EGFQVTP WHQG + DDGR+ +A+TVK+ARWEYSTRPVYGWG+
Sbjct: 117 ----------EFYRRVEEGFQVTPFWHQGRLRDDGRSPYAKTVKTARWEYSTRPVYGWGD 166

Query: 244 VGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFP 303
           VGSKQ STAGWLAA PVFEPHWQICMA GL+TGWIEW GER+EF+DAPSYSEKNWGG FP
Sbjct: 167 VGSKQKSTAGWLAALPVFEPHWQICMAHGLATGWIEWGGERYEFEDAPSYSEKNWGGGFP 226

Query: 304 RKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVV 362
            KWFWVQCNVF+GA+G ++LTAGGGLR LP+L   FE  A+IG+HYDG  YEFVPWNG V
Sbjct: 227 SKWFWVQCNVFDGASG-LSLTAGGGLRGLPLLPGVFEEVALIGVHYDGKFYEFVPWNGEV 285

Query: 363 SWEISQWGYWYFAAENQTHMVELKATT-KYPGTTLRAPTSEAGLAPACKDTCFGELTLQL 421
            W++S WG W   AEN+TH VEL+ATT K PGT LRAPT++ GLAP C+DT  G+L LQL
Sbjct: 286 EWDVSPWGRWKLRAENETHEVELEATTAKEPGTVLRAPTTDVGLAPFCRDTFAGKLKLQL 345

Query: 422 WERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLF 479
           WER +DG+KGK+ILD TS MAA+EVGGGPW++TWK      E L+  L +PVDV+ +F
Sbjct: 346 WERSWDGSKGKLILDATSSMAAVEVGGGPWWSTWKGTARMKEPLKSLLGLPVDVESIF 403

Length = 403

>gnl|CDD|222624 pfam14249, Tocopherol_cycl, Tocopherol cyclase

 Score =  543 bits (1401), Expect = 0.0
 Identities = 201/371 (54%), Positives = 248/371 (66%), Gaps = 40/371 (10%)

Query: 78  TRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADD 137
           +RRFFEGWYFRV++PE +QSF  +YS+E+P              G   +G   QILG +D
Sbjct: 1   SRRFFEGWYFRVTLPEIRQSFAFMYSIEDPI------------GGQPHSGGAAQILGPED 48

Query: 138 KYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNR 197
           KY+C    +   FW SRH+L LG+  +     + P + +PPQ              EF R
Sbjct: 49  KYLCRTFPDVKKFWASRHQLALGHWGK--TNLKLPPQYLPPQ--------------EFER 92

Query: 198 RVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAA 257
           RV EG+Q T  W+QG I D G      T ++ RWEYS RPVYGWG+VG  Q STAGWL+ 
Sbjct: 93  RVQEGYQATATWNQGFIRDPG------TGETCRWEYSIRPVYGWGDVGRPQQSTAGWLSY 146

Query: 258 FPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGA 317
            P+FEP WQI MA GL+TGWIEW+G+R+EF++AP+YSEKNWGGAFPRKWFW+ CN FEG 
Sbjct: 147 LPIFEPGWQILMAHGLATGWIEWNGKRYEFENAPAYSEKNWGGAFPRKWFWINCNSFEGE 206

Query: 318 TGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAE 377
             ++ALTA GG RQ+      E+ A+IGIHY G  YEFVPWN  V+W+I+ WGYW+  AE
Sbjct: 207 -PDLALTAAGGRRQVLWW--MESVALIGIHYQGKFYEFVPWNSQVTWQITPWGYWHMQAE 263

Query: 378 NQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDV 437
           N+ H VEL+ TT  PGT LRAPT E GL   C+DT  GEL LQLWER  DG+KGK+IL  
Sbjct: 264 NERHEVELEGTTDEPGTPLRAPTEE-GLQFLCRDTMKGELKLQLWER--DGSKGKVILKA 320

Query: 438 TSDMAALEVGG 448
           TSD+A LEVGG
Sbjct: 321 TSDLAGLEVGG 331

This family contains tocopherol cyclases. These enzymes are involved in the synthesis of tocopherols and tocotrienols (vitamin E). Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	490
PLN02818	403	tocopherol cyclase	100.0
PF14249	336	Tocopherol_cycl: Tocopherol cyclase	100.0
PF07143	312	CrtC: Hydroxyneurosporene synthase (CrtC); InterPr	97.79
PF10974	333	DUF2804: Protein of unknown function (DUF2804); In	95.02

>PLN02818 tocopherol cyclase

Probab=100.00  E-value=1.1e-131  Score=1017.57  Aligned_cols=401  Identities=70%  Similarity=1.347  Sum_probs=392.7

Q ss_pred             CccCCCcccccCCCCCCceeeEEEEEecCCCCeEEEEEEEeecCCcccccchhhhhccCCccccceEEEEecCCeEEEEc
Q 011258           64 ELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHY  143 (490)
Q Consensus        64 ~~~tPhsgyh~~g~~~~fFEGWYfK~~~p~~~~sfa~iysI~~p~g~~~~~a~~~~~~~~~~~g~~iQVl~~~~~y~~~~  143 (490)
                      +++||||||||||++|||||||||||++||.+|||||||||+||.++++++.|++.++|++++|+++|||+++|+|+||+
T Consensus         1 ~~~tPHsGyh~dg~~rrFfEGWy~rvtlpe~~qsf~fmysiedp~~~~~~~~~~~~~~~~~~~g~~aQilg~~d~y~~~~   80 (403)
T PLN02818          1 ALRTPHSGYHFDGTPRRFFEGWYFKVSLPEVKQSFAFMYSIEDPAFRERMSGLEELLHGSRFTGVGAQILGPDDKYLCQF   80 (403)
T ss_pred             CCcCCCCCcccCCCCcCcccceEEEEEcCCCCceEEEEEEeeCCccccccccchhhcCCCCCCCceeeeecCCCceEEEe
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccCcceEEeCceecCCCCCCCCCCCCCCccccccccccccchhhhceeeccceeeccceeceeeecCCCCccc
Q 011258          144 SEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFA  223 (490)
Q Consensus       144 ~~~~~~f~~~~~~l~iG~~~~s~~~~~~~~~~~~p~~~g~~~~~~~~~~~~f~~~~~~g~q~t~~~~qG~l~~~~~~~~~  223 (490)
                      ++++.+||+++++|+|||++..+.+.+.+.++|+|+              ||+++|+||||+||+||||+|+|+++++|.
T Consensus        81 ~~~~~~Fw~~~~~l~lg~~~~~~~~~~~~~~~~~p~--------------~f~~~v~~G~q~t~~~~qG~i~d~~~~~~~  146 (403)
T PLN02818         81 TEDSTKFWGSRHELALGNTFAPKNGSTPPRSEVPPD--------------EFYRRVEEGFQVTPFWHQGRLRDDGRSPYA  146 (403)
T ss_pred             CCCcccccccchhcccccccccccCCCCCcccCChH--------------HHHHhhhcceeeccceecceecCCCCCccc
Confidence            999999999999999999999999999999999999              999999999999999999999999999999


Q ss_pred             ccccccccceecccccccCCCCCCCCccCCcccccCCCCcceEEEecCcceEEEEEECCEEEEEcCCcccccCCCCCCCC
Q 011258          224 ETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFP  303 (490)
Q Consensus       224 ~~~~~~~W~~si~p~~gwG~~~~~~~~~mGpfs~LP~mEphw~V~m~h~lasG~I~~NGk~~dF~~g~GYiEKNWG~SFP  303 (490)
                      ++++++||+|+|+|+||||++.++|++|||||++||+|||||||+|+|++++|+|+|||++|+|++++||+|||||+|||
T Consensus       147 ~~~~~~rw~y~~~p~~gwG~~~~~~~stmGwfs~lP~fEp~wqVlmahg~asG~I~wnG~~yeF~~apgY~EKNWG~sFP  226 (403)
T PLN02818        147 KTVKTARWEYSTRPVYGWGDVGSKQKSTAGWLAALPVFEPHWQICMAHGLATGWIEWGGERYEFEDAPSYSEKNWGGGFP  226 (403)
T ss_pred             cccceEEEEEEeeeeeecCCCCCCCCCccchhhhcccccCcceeeecCcEEEEEEEECCEEEEecCCCeeeEccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeccCCCCCcceEEEEcccccccCcc-ccccceEEEEEEECCEEEEEecCCccEEEEEeeeeeEEEEEEeCcEE
Q 011258          304 RKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHM  382 (490)
Q Consensus       304 ~~w~W~Qcn~Fd~~~~s~sLt~AGG~~~IP~l-~~f~~~~lIgl~~~Gk~YrFaty~ga~~~~v~~~g~w~i~~~n~~~~  382 (490)
                      ++|+|+|||+|+++++ +||||+||+|+||++ .++++++||+||++||+|||+||+|++.|+|++|++|+|+++|++|+
T Consensus       227 ~kWfWiQCN~F~~~~~-LalTagGg~r~IP~l~~~fe~v~ligvh~~GkfYrFap~~g~v~w~v~pwg~W~i~a~n~~~~  305 (403)
T PLN02818        227 SKWFWVQCNVFDGASG-LSLTAGGGLRGLPLLPGVFEEVALIGVHYDGKFYEFVPWNGEVEWDVSPWGRWKLRAENETHE  305 (403)
T ss_pred             cCeeeEecccCCCCCc-EEEEecCCcccCccccccccceEEEEEEECCEEEEEEeecceEEEEEccCCcEEEEEECCCEE
Confidence            9999999999999998 999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEe-cCCCceEeCCCCCCCcccceeecccEEEEEEEEeccccCCCceEEEEEeeceeEEeeeCCcccccccccccc
Q 011258          383 VELKATT-KYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTAT  461 (490)
Q Consensus       383 Lei~~~~-~~~g~~L~AP~~g~gM~~~c~ES~~g~v~v~L~ek~~~g~~g~lI~d~~s~~AglEiGG~pw~~~w~~~~~~  461 (490)
                      |+|++++ +.+++.|+||+.+.+|++.|+||+.|+++|+|+++.+++.+|++|++++|++||||+||+||+++|+++++|
T Consensus       306 veIe~~~~~~~g~~LrAPt~~~gM~~~crESl~G~l~l~L~~~~~~~~~gk~I~d~~S~~AGLEvGGgpW~~~W~~~~~~  385 (403)
T PLN02818        306 VELEATTAKEPGTVLRAPTTDVGLAPFCRDTFAGKLKLQLWERSWDGSKGKLILDATSSMAAVEVGGGPWWSTWKGTARM  385 (403)
T ss_pred             EEEEEEEcCCCCceEECCCCCCCCCchhhhcCCceEEEEEEecccCCCCCcEEEEeccCceeEEecCCcCcccccccccc
Confidence            9999999 668999999998868999999999999999999987788888999999999999999999999999999999


Q ss_pred             hHHHhhhcccceeccccc
Q 011258          462 PELLRRTLNVPVDVDGLF  479 (490)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~  479 (490)
                      +|||+++|++|||||+|+
T Consensus       386 ~~~~~~~~~~p~d~~~~~  403 (403)
T PLN02818        386 KEPLKSLLGLPVDVESIF  403 (403)
T ss_pred             hhhHHHHhCCccchhhcC
Confidence            999999999999999985

>PF14249 Tocopherol_cycl: Tocopherol cyclase

Probab=100.00  E-value=9e-101  Score=781.84  Aligned_cols=333  Identities=53%  Similarity=1.100  Sum_probs=316.0

Q ss_pred             CCCceeeEEEEEecCCCCeEEEEEEEeecCCcccccchhhhhccCCccccceEEEEecCCeEEEEcCccccccccCcceE
Q 011258           78 TRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHEL  157 (490)
Q Consensus        78 ~~~fFEGWYfK~~~p~~~~sfa~iysI~~p~g~~~~~a~~~~~~~~~~~g~~iQVl~~~~~y~~~~~~~~~~f~~~~~~l  157 (490)
                      +|||||||||||++|+.+|||||||||+||.++++            ++|+++|||+++|+|+||+++++.+||++++++
T Consensus         1 ~~~ffEGWy~rvtlp~~~~sf~~mysi~dp~~~~~------------~~g~~aqilg~~d~y~~~~~~~~~~fw~~~~~~   68 (336)
T PF14249_consen    1 SRRFFEGWYFRVTLPEIGQSFAFMYSIEDPIGGQP------------YSGGAAQILGPDDKYLCRTFPDVQKFWASRHEL   68 (336)
T ss_pred             CCccccceEEEEEcCCCCcEEEEEEEEEcCCCCCC------------cCCceeEEecCCCeEEEEECCCCCceEEecccc
Confidence            58999999999999999999999999999999877            899999999999999999999999999999999


Q ss_pred             EeCceecCC---CCCCCCCCCCCCccccccccccccchhhhceeeccceeeccceeceeeecCCCCccccccccccccee
Q 011258          158 MLGNTFRAD---KGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYS  234 (490)
Q Consensus       158 ~iG~~~~s~---~~~~~~~~~~~p~~~g~~~~~~~~~~~~f~~~~~~g~q~t~~~~qG~l~~~~~~~~~~~~~~~~W~~s  234 (490)
                      +||+.+...   +.++.++++|+|+              +|+++|+||||+|++||||.|+|+++..+|      +|+|+
T Consensus        69 ~lg~~~~~~~~~~~~~~~~~~~~p~--------------~f~~~v~~g~q~t~~~~qg~~~~~~~~~~~------~w~y~  128 (336)
T PF14249_consen   69 ALGNLFLGHWGKTDLKPPPGYLPPQ--------------EFERRVQEGYQVTATWNQGIIRDPGTGKTC------RWDYS  128 (336)
T ss_pred             ccCceeeeecccCCCCCCccccChH--------------HhHhhhhccceeccccccCCccCCCCccEE------EEEEE
Confidence            988888777   6677788899999              999999999999999999999999987777      89999


Q ss_pred             cccccccCCCCCCCCccCCcccccCCCCcceEEEecCcceEEEEEECCEEEEEcCCcccccCCCCCCCCCCcEEEEeccC
Q 011258          235 TRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVF  314 (490)
Q Consensus       235 i~p~~gwG~~~~~~~~~mGpfs~LP~mEphw~V~m~h~lasG~I~~NGk~~dF~~g~GYiEKNWG~SFP~~w~W~Qcn~F  314 (490)
                      |+|++|||+++++|++|||||++||+|||||||+|+|++++|+|+|||++|+|++|+||+|||||+|||++|+|+|||+|
T Consensus       129 i~p~~~wg~~~~~~~~~mGwfs~lP~~Ec~w~V~~~~g~asG~i~~nG~~~~F~~g~gY~EKNWG~sFP~~W~W~QcN~F  208 (336)
T PF14249_consen  129 IKPIYGWGNSGRLQKSIMGWFSFLPFFECYWQVLMAHGLASGWIEWNGKRYDFTGGPGYIEKNWGGSFPSKWFWIQCNSF  208 (336)
T ss_pred             EcccccCCCccccCCCccchHhhccccCCCchheecCcEEEEEEEECCEEEEECCCceeeccccCcCCCCCcEEEEcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEEcccccccCccccccceEEEEEEECCEEEEEecCCccEEEEEeeeeeEEEEEEeCcEEEEEEEEecCCCc
Q 011258          315 EGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGT  394 (490)
Q Consensus       315 d~~~~s~sLt~AGG~~~IP~l~~f~~~~lIgl~~~Gk~YrFaty~ga~~~~v~~~g~w~i~~~n~~~~Lei~~~~~~~g~  394 (490)
                      +++++ ++|+++||+++||++  .+.++|||||++||+|||+||++.+.|+|++|++|+|+++|++|+|+|+++++.+++
T Consensus       209 ~~~~~-~slt~sgg~~~i~~~--~e~~~ligi~~~Gk~YrF~p~n~~v~~~V~~~g~w~i~~~n~~~~lei~~~~~~~g~  285 (336)
T PF14249_consen  209 DGEPD-VSLTASGGRRPIPGL--TESVGLIGIHYDGKFYRFAPYNSKVSWQVDPWGRWRIRARNRKYELEIEATTDSPGT  285 (336)
T ss_pred             CCCCC-eEEEEeecccccCcc--ccccEEEEEEECCEEEEEEcccceEEEEEeeCceEEEEEECCCEEEEEEEEECCCCc
Confidence            98876 999999999999875  445899999999999999999999999999999999999999999999999877789


Q ss_pred             eEeCCCCCCCcccceeecccEEEEEEEEeccccCCCceEEEEEeeceeEEeeeC
Q 011258          395 TLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGG  448 (490)
Q Consensus       395 ~L~AP~~g~gM~~~c~ES~~g~v~v~L~ek~~~g~~g~lI~d~~s~~AglEiGG  448 (490)
                      .|+||+.+ +|++.|+||+.|+++|+|++++  +.++++|++++|++||||+||
T Consensus       286 ~L~AP~~~-~m~~~~rEsl~g~v~v~L~~~~--~~~g~lI~~~~s~~AGLEvGG  336 (336)
T PF14249_consen  286 PLRAPTEG-GMQPRCRESLQGRVRVELWEKK--GKKGKLIFDGTSNLAGLEVGG  336 (336)
T ss_pred             EEeCcCCC-CCchhhhccCcEEEEEEEEECc--CCCCcEEEEeecCcEEEeecC
Confidence            99999988 8999999999999999999953  455899999999999999997

>PF07143 CrtC: Hydroxyneurosporene synthase (CrtC); InterPro: IPR010791 This family consists of several purple photosynthetic bacterial hydroxyneurosporene synthase (CrtC) proteins

Probab=97.79  E-value=0.0003  Score=71.46  Aligned_cols=58  Identities=19%  Similarity=0.396  Sum_probs=42.9

Q ss_pred             EEEecCcceEEEEEECCEEEEEcCCcccccCCCCCCC--CC--CcEEEEeccCCCCCcceEEEEc
Q 011258          266 QICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAF--PR--KWFWVQCNVFEGATGEVALTAG  326 (490)
Q Consensus       266 ~V~m~h~lasG~I~~NGk~~dF~~g~GYiEKNWG~SF--P~--~w~W~Qcn~Fd~~~~s~sLt~A  326 (490)
                      .-++.+..++|+|+++|+.+.++ |.||.+||||...  +.  .|-|.+.+.-++.  ++|+...
T Consensus       143 yws~P~~~v~Gtl~i~g~~~~V~-G~aw~Dh~WG~~~l~~~~~gW~W~~l~l~dg~--~l~~y~~  204 (312)
T PF07143_consen  143 YWSAPRLRVSGTLTIDGKTIQVT-GTAWFDHQWGSFPLAPGQSGWDWFRLQLDDGR--ELMLYQL  204 (312)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEE-EEEEEEEEEESS-S-TTEEEEEEEEEEETTS---EEEEEEE
T ss_pred             EEccccEEEEEEEEECCEEEEEe-eeEEEEEcccCccCccCCCccEEEEEECCCCC--EEEEEEE
Confidence            33477777899999999999999 8999999999754  22  5999999643322  2555443

The enzyme catalyses the conversion of various acyclic carotenes including 1-hydroxy derivatives. This broad substrate specificity reflects the participation of CrtC in 1'-HO-spheroidene and in spirilloxanthin biosynthesis [].; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0016117 carotenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2ICH_B.

>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function

Probab=95.02  E-value=0.23  Score=51.76  Aligned_cols=107  Identities=15%  Similarity=0.374  Sum_probs=75.9

Q ss_pred             ceEEEEEECCEEEEEcCCcccccCCCCCCC---CCCcEEEEeccCCCCCcceEEEEcccccccCccccccceEEEEEEEC
Q 011258          273 LSTGWIEWDGERFEFQDAPSYSEKNWGGAF---PRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYD  349 (490)
Q Consensus       273 lasG~I~~NGk~~dF~~g~GYiEKNWG~SF---P~~w~W~Qcn~Fd~~~~s~sLt~AGG~~~IP~l~~f~~~~lIgl~~~  349 (490)
                      .++|+|.++|++++|+...++.=-|||+.+   -..|-|.-++...+.-..+.|-++.|... +-     +..=-+|.++
T Consensus       172 pv~G~v~~g~~~~~~~~~~~~a~lD~~rG~~~~~t~W~Was~sg~~~dG~~iG~NL~~g~~d-~t-----~~tEN~l~~d  245 (333)
T PF10974_consen  172 PVSGSVRLGGKEYSFDPENAFAVLDWGRGYWPRETFWNWASASGRLDDGRRIGFNLGAGFND-GT-----GATENALWVD  245 (333)
T ss_pred             ceEEEEEECCEEEecCCCCcEEEEEcCCCccCCcCeEEEEEEEEECCCCCEEEEEeeccccc-CC-----CCcceEEEEC
Confidence            359999999999999977777777888764   34899999998864221377777776544 11     1233568899


Q ss_pred             CEEEEEecCCccEEEEEee---eeeEEEEEEeCcEEEEEEEEe
Q 011258          350 GILYEFVPWNGVVSWEISQ---WGYWYFAAENQTHMVELKATT  389 (490)
Q Consensus       350 Gk~YrFaty~ga~~~~v~~---~g~w~i~~~n~~~~Lei~~~~  389 (490)
                      |+.+++    ..+.++++.   -..|+|+-.++...|+.+-..
T Consensus       246 G~~~kL----~~V~f~~~~~~~~~pW~i~s~dg~vdL~FtP~~  284 (333)
T PF10974_consen  246 GKLHKL----PPVRFEYDREDPMKPWRITSDDGRVDLTFTPIF  284 (333)
T ss_pred             CEEEEC----CcEEEEecCcCCCCCeEEEcCCCeEEEEEEEee
Confidence            999988    344666653   247999998777766665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	490
2ich_A	335	Putative ATTH; structural genomics, joint center f	97.03

>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1

Probab=97.03  E-value=0.056  Score=55.08  Aligned_cols=57  Identities=14%  Similarity=0.402  Sum_probs=43.6

Q ss_pred             EEecCcceEEEEEECCEEEEEcCCcccccCCCCCCCCC----CcEEEEeccCCCCCcceEEEEc
Q 011258          267 ICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPR----KWFWVQCNVFEGATGEVALTAG  326 (490)
Q Consensus       267 V~m~h~lasG~I~~NGk~~dF~~g~GYiEKNWG~SFP~----~w~W~Qcn~Fd~~~~s~sLt~A  326 (490)
                      .+..+-.++|+|+++|+.+.++ |.+..+|.||+++..    .|=|...+ +++... +|+..-
T Consensus       165 yS~P~l~v~Gtl~~~G~~~~V~-G~aW~DrEWss~~l~~~q~GWDWf~l~-Lddg~~-Lm~~~l  225 (335)
T 2ich_A          165 YSEPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDPNAAGWDWISAN-LDDGSA-LMAFQI  225 (335)
T ss_dssp             EEEEEEEEEEEEEESSCEEEEE-EEEEEEEEEESSCSCTTEEEEEEEEEE-ETTSCE-EEEEEE
T ss_pred             EecccEEEEEEEEECCEEEEEE-ecEEEcccCcCccCCCCCCceEEEEEE-cCCCCc-EEEEEE
Confidence            3444445699999999999997 789999999998866    78898777 444433 777543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	490
d2icha1	328	AttH-related protein NE1406 {Nitrosomonas europaea	96.34

>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406 {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: AttH-like
superfamily: AttH-like
family: AttH-like
domain: AttH-related protein NE1406
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.34  E-value=0.12  Score=50.04  Aligned_cols=72  Identities=14%  Similarity=0.344  Sum_probs=52.4

Q ss_pred             CCcccccCCCC-cceEEEecCcceEEEEEECCEEEEEcCCcccccCCCCCCCCC----CcEEEEeccCCCCCcceEEEEc
Q 011258          252 AGWLAAFPVFE-PHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPR----KWFWVQCNVFEGATGEVALTAG  326 (490)
Q Consensus       252 mGpfs~LP~mE-phw~V~m~h~lasG~I~~NGk~~dF~~g~GYiEKNWG~SFP~----~w~W~Qcn~Fd~~~~s~sLt~A  326 (490)
                      .|....-+... ..+..+...-.++|+|+++|+.+.++ |.+..++.||+++-.    .|-|.+.+ |++... +|+..-
T Consensus       147 ~G~~~k~~~~~~~syyys~p~l~~~Gtl~~~g~~~~V~-G~~W~DheWgs~~l~~~~~gWdWfsl~-Lddg~~-Lm~~~l  223 (328)
T d2icha1         147 NGFSRKGPGAPQASYYYSEPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDPNAAGWDWISAN-LDDGSA-LMAFQI  223 (328)
T ss_dssp             TTEEECSSSTTCEEEEEEEEEEEEEEEEEESSCEEEEE-EEEEEEEEEESSCSCTTEEEEEEEEEE-ETTSCE-EEEEEE
T ss_pred             CceEcccCCCCcchHhhhhhheeeeeEEEEcCceEEcc-CCEEEeeeccccccccccceEEEEEEE-ECCCCe-EEEEEe
Confidence            44444433332 24556666666799999999999997 799999999988775    49999987 454443 888765