Citrus Sinensis ID: 011274

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MDKPVPMPEPWRPDSLLFRPPETPREPMEFLSRSWSVSAVEVSKALAPQHPQLILSKTPSSVIQEDLAAELEDQNGAVSGNPFSFACSETSQMIMERIMSQSQQDVSPRTSGRLSHSSGPLNGGGSLTDSPPVSPSEIDDVKFCRNNNNNSSANNIHGGYHHHQLNTGSTFRTPAAAASATPVAAAGGKTVGRWLKDRREKKKEEARVHNAQLHAAITVAGVAAAVAAIAAATAASSGSGKDEHMAKTDMAVASAATLVAAQCVETAEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKGMGGGNNNGGGGSKDGSSNGSFSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLNVAAERSNRHRI
ccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccEEEEEEEEEEccccEEEEEEEcccccccccccccEEEEEEEccccccccccccccccccEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccc
cccccccccccccccccccccccccccHHHHHccccHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEcEcccccccccccccccccccccccccccccccccccccHcHHHHHHcccHHHHHccccccEEEEEEEEEccccEEEEEEccccEEEEEEccccEEEEEcccccccccccccccccccEEEEEEEEccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccc
mdkpvpmpepwrpdsllfrppetprepmeflsRSWSVSAVEVSkalapqhpqlilsktpssvIQEDLAAEledqngavsgnpfsfacsETSQMIMERIMSqsqqdvsprtsgrlshssgplngggsltdsppvspseiddvkfcrnnnnnssannihggyhhhqlntgstfrtpaaaasatpvaaaggktVGRWLKDRREKKKEEARVHNAQLHAAITVAGVAAAVAAIAAATaassgsgkdehmAKTDMAVASAATLVAAQCVETAEAMGAEREHLAAVVSSAvnvrsagdiMTLTAGAATALRGAATLKARALKEVWNIAAvipvekgmgggnnnggggskdgssngsfsgelvpeenfLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEvipdmpawpgrhlleggedrryfGLKTVLRGVVEFECRSQREYDIWTQGVARLLNVAAERSNRHRI
mdkpvpmpepwrpdsllfrpPETPREPMEFLSRSWSVSAVEVSKALAPQHPQLILSKTPSSVIQEDLAAELEDQNGAVSGNPFSFACSETSQMIMERIMSQSQQDVSPRTSGRLShssgplngggsltdsppvSPSEIDDVKFCRNNNNNSSANNIHGGYHHHQLNTGSTFRTPAAAASatpvaaaggktvgrWLKDRREKKKEEARVHNAQLHAAITVAGVAAAVAAIAAATaassgsgkdEHMAKTDMAVASAATLVAAQCVETAEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKGMGGGNNNGGGGSKDGSSNGSFSGELVPEENFLGICSRELLARGCELLkrtrkgdlhwkIVSVYINRLNQVMLKMKSRHvagtitkkkknvvlevipdmpawpgrhlleggedRRYFGLKTVLRGVVEFECRsqreydiwtqGVARLLNVaaersnrhri
MDKPVPMPEPWRPDSLLFRPPETPREPMEFLSRSWSVSAVEVSKALAPQHPQLILSKTPSSVIQEDLAAELEDQNGAVSGNPFSFACSETSQMIMERIMSQSQQDVSPRTSGRLSHSSGPLNGGGSLTDSPPVSPSEIDDVKFCRnnnnnssannIHGGYHHHQLNTGSTFRtpaaaasatpvaaaGGKTVGRWLKDrrekkkeearVHNAQLHaaitvagvaaavaaiaaataassgsgKDEHMAKTDMavasaatlvaaqcvETAEAMGAEREHLaavvssavnvrsaGDIMtltagaatalrgaatlkaralkEVWNIAAVIPVEKgmgggnnnggggskdgssngsfsgELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLNVAAERSNRHRI
******************************************************************************************************************************************************************************************************************AQLHAAITVAGVAAAVAAIAAA******************AVASAATLVAAQCVETAEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVE****************************PEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLNVA*********
**************************PMEFLSRSWSVSAVEV************************************************************************************************DDVKFCRNNNNNSSANNIHGGYHHHQLNTGSTFRT***************************************LHAAITVAGVAAAVAAIA********************AVASAATLVAAQCVETAEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKGMG***********************VPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWP******GGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLNVAAE*******
*********PWRPDSLLFRPPETPREPMEFLSRSWSVSAVEVSKALAPQHPQLILSKTPSSVIQEDLAAELEDQNGAVSGNPFSFACSETSQMIMERI************************************PSEIDDVKFCRNNNNNSSANNIHGGYHHHQLNTGSTFRT***************KTVGRWLKD**********VHNAQLHAAITVAGVAAAVAAIA****************KTDMAVASAATLVAAQCVETAEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKGMGGGNNNGGGGSKDGSSNGSFSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLNVAA********
*************DSLLFRPPETPREPMEFLSRSWSV********L*********************************************************************************T*****SPSEIDDVKFCRNNNNNSSANNIHGGYHHHQLNTGSTFRTPAAAASATPVAAAGGKTVGRWLKDRREKKKEEARVHNAQLHAAITVAGVAAAVAAIAAATAASS*********K*************AQCVETAEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKGM**********************ELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLNVAAERS*****
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MDKPVPMPEPWRPDSLLFRPPETPREPMEFLSRSWSVSAVEVSKALAPQHPQLILSKTPSSVIQEDLAAELEDQNGAVSGNPFSFACSETSQMIMERIMSQSQQDVSPRTSGRLSHSSGPLNGGGSLTDSPPVSPSEIDDVKFCRNNNNNSSANNIHGGYHHHQLNTGSTFRTPAAAASATPVAAAGGKTVGRWLKDRREKKKEEARVHNAQLHAAITVAGVAAAVAAIAAATAASSGSGKDEHMAKTDMAVASAATLVAAQCVETAEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKGMGGGNNNGGGGSKDGSSNGSFSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLNVAAERSNRHRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
255552063477 ice binding protein, putative [Ricinus c 0.950 0.974 0.780 0.0
224111118485 predicted protein [Populus trichocarpa] 0.948 0.956 0.723 1e-179
224099835471 predicted protein [Populus trichocarpa] 0.940 0.976 0.753 1e-174
356575883476 PREDICTED: uncharacterized protein LOC10 0.959 0.985 0.758 1e-172
15228863472 uncharacterized protein [Arabidopsis tha 0.946 0.980 0.700 1e-172
356535974476 PREDICTED: uncharacterized protein LOC10 0.955 0.981 0.755 1e-172
22328630475 uncharacterized protein [Arabidopsis tha 0.932 0.96 0.711 1e-171
297830992476 hypothetical protein ARALYDRAFT_898762 [ 0.948 0.974 0.706 1e-170
297800744472 hypothetical protein ARALYDRAFT_493425 [ 0.942 0.976 0.711 1e-169
225432774461 PREDICTED: uncharacterized protein LOC10 0.928 0.984 0.760 1e-169
>gi|255552063|ref|XP_002517076.1| ice binding protein, putative [Ricinus communis] gi|223543711|gb|EEF45239.1| ice binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/501 (78%), Positives = 419/501 (83%), Gaps = 36/501 (7%)

Query: 1   MDKPVPMPEPWRPDSLLFRPPETPREPMEFLSRSWSVSAVEVSKALAPQHPQLILSKTPS 60
           MDKP+   EPWRPD  LFRPPETPREPMEFLSRSWSVSA+EVSKALAP  PQ++LSKT +
Sbjct: 1   MDKPIT--EPWRPDLALFRPPETPREPMEFLSRSWSVSALEVSKALAP--PQMLLSKTSA 56

Query: 61  -SVIQEDLAAELEDQN-----------GAVSGNPFSFACSETSQMIMERIMSQSQQDVSP 108
             VIQED+A ELE+ N             VSGNPFSFA SETSQM+MERIMSQSQ +VSP
Sbjct: 57  GCVIQEDIAGELEEINISNNINNNNNNATVSGNPFSFASSETSQMVMERIMSQSQ-EVSP 115

Query: 109 RTSGRLSHSSGPLNGGGSLTDSPPVSPSEIDDVKFCRNNNNNSSANNIHGGYHHHQLNTG 168
           RTSGRLSHSSGPLNG  SLTDSPPVSPSEIDDVK+ R NN  S+           Q  T 
Sbjct: 116 RTSGRLSHSSGPLNG--SLTDSPPVSPSEIDDVKYSRPNNAIST-----------QFRTP 162

Query: 169 STFRTPAAAASATPVAAAGGKTVGRWLKDRREKKKEEARVHNAQLHAAITVAGVAAAVAA 228
           S   TP  A+  T     GGKTVGRWLKDRREKKKEE R  NAQLHAAI+VAGVAAAVAA
Sbjct: 163 SA--TPGVASGFTAGGGGGGKTVGRWLKDRREKKKEETRAQNAQLHAAISVAGVAAAVAA 220

Query: 229 IAAATAASSGSGKDEHMAKTDMAVASAATLVAAQCVETAEAMGAEREHLAAVVSSAVNVR 288
           IAAATAASSG+GKDE MAKTDMAVASAATLVAAQCVE AEAMGAEREHLA+VVSSAVNVR
Sbjct: 221 IAAATAASSGNGKDEQMAKTDMAVASAATLVAAQCVEAAEAMGAEREHLASVVSSAVNVR 280

Query: 289 SAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKGMGGGNNNGGGGSKDGSSN 348
           S GDIMTLTA AATALRGAATLKARALKEVWNIAAVIPV+KG+G    N      +GSSN
Sbjct: 281 SPGDIMTLTAAAATALRGAATLKARALKEVWNIAAVIPVDKGLGVSGGN----GSNGSSN 336

Query: 349 GSFSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRH 408
           GSFSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVY+NR+NQVMLKMKSRH
Sbjct: 337 GSFSGELVPEENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYVNRMNQVMLKMKSRH 396

Query: 409 VAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLRGVVEFECRSQREYDI 468
           VAGTITKKKKNVVLEVI  +PAWPGRHLLEGGE RRYFGLKTVLRGVVEFEC +QR+YD+
Sbjct: 397 VAGTITKKKKNVVLEVIKHIPAWPGRHLLEGGEHRRYFGLKTVLRGVVEFECLNQRDYDL 456

Query: 469 WTQGVARLLNVAAERSNRHRI 489
           WTQGV+RLL +A E+S+RHRI
Sbjct: 457 WTQGVSRLLAIAEEKSHRHRI 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111118|ref|XP_002315753.1| predicted protein [Populus trichocarpa] gi|222864793|gb|EEF01924.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224099835|ref|XP_002311638.1| predicted protein [Populus trichocarpa] gi|222851458|gb|EEE89005.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356575883|ref|XP_003556066.1| PREDICTED: uncharacterized protein LOC100814874 [Glycine max] Back     alignment and taxonomy information
>gi|15228863|ref|NP_188920.1| uncharacterized protein [Arabidopsis thaliana] gi|9279699|dbj|BAB01256.1| unnamed protein product [Arabidopsis thaliana] gi|332643158|gb|AEE76679.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356535974|ref|XP_003536516.1| PREDICTED: uncharacterized protein LOC100815538 [Glycine max] Back     alignment and taxonomy information
>gi|22328630|ref|NP_193210.2| uncharacterized protein [Arabidopsis thaliana] gi|42572905|ref|NP_974549.1| uncharacterized protein [Arabidopsis thaliana] gi|18377642|gb|AAL66971.1| unknown protein [Arabidopsis thaliana] gi|23297568|gb|AAN12896.1| unknown protein [Arabidopsis thaliana] gi|332658090|gb|AEE83490.1| uncharacterized protein [Arabidopsis thaliana] gi|332658091|gb|AEE83491.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297830992|ref|XP_002883378.1| hypothetical protein ARALYDRAFT_898762 [Arabidopsis lyrata subsp. lyrata] gi|297329218|gb|EFH59637.1| hypothetical protein ARALYDRAFT_898762 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297800744|ref|XP_002868256.1| hypothetical protein ARALYDRAFT_493425 [Arabidopsis lyrata subsp. lyrata] gi|297314092|gb|EFH44515.1| hypothetical protein ARALYDRAFT_493425 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225432774|ref|XP_002283288.1| PREDICTED: uncharacterized protein LOC100256307 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
TAIR|locus:2130185475 AT4G14740 [Arabidopsis thalian 0.944 0.972 0.520 1.2e-122
TAIR|locus:2149514453 AT5G43870 [Arabidopsis thalian 0.591 0.637 0.47 2.2e-101
TAIR|locus:2094414472 AT3G22810 [Arabidopsis thalian 0.940 0.974 0.448 1.8e-96
TAIR|locus:2077294498 FKD1 "FORKED 1" [Arabidopsis t 0.916 0.899 0.445 3.9e-92
TAIR|locus:1006230325124 AT4G32785 [Arabidopsis thalian 0.220 0.870 0.572 1.1e-25
TAIR|locus:2130888405 AT4G17350 [Arabidopsis thalian 0.206 0.249 0.456 2e-24
TAIR|locus:2168943406 AT5G47440 [Arabidopsis thalian 0.214 0.258 0.420 5.1e-22
TAIR|locus:2129031429 AT4G16670 [Arabidopsis thalian 0.408 0.466 0.257 1.7e-20
TAIR|locus:2125667270 AT4G32780 "AT4G32780" [Arabido 0.182 0.329 0.309 4.4e-06
TAIR|locus:2130185 AT4G14740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
 Identities = 254/488 (52%), Positives = 296/488 (60%)

Query:     7 MPEPWRPDSLLFRPPETPREPMEFLSRSWSVSAVEVSKALAPQHPQLILSKTPSSVIQED 66
             M   WRPD + +RPPETP EPMEFL+RSWSVSA+EVSKAL P +PQ++LSKT     +E 
Sbjct:     5 MVPTWRPDPV-YRPPETPLEPMEFLARSWSVSALEVSKALTPPNPQILLSKTEEEEEEEP 63

Query:    67 LAAELE-----DQNGAVSGNPFSFACSETSQMIMERIMSQSQQDVSPRTSGRLSHSSGPL 121
             +++ ++     +  G V+GNPFSFACSETSQM+M+RI+S SQ+ VSPRTSGRLSHSSGPL
Sbjct:    64 ISSVVDGDGDTEDTGLVTGNPFSFACSETSQMVMDRILSHSQE-VSPRTSGRLSHSSGPL 122

Query:   122 NGGGSLTDSPPVSPSEIDDVK-FCRXXXXXXXXXXIHGGYHHHQLNT-GSTFRXXXXXXX 179
             NG  SLTDSPPVSP E DD+K FCR               + + LN+  S FR       
Sbjct:   123 NG--SLTDSPPVSPPESDDIKQFCRA--------------NKNSLNSVNSQFRSTAATPG 166

Query:   180 XXXXXXXGGKTVGRWLKDXXXXXXXXXXVHNAQLHXXXXXXXXXXXXXXXXXXXXXXXXX 239
                      KTVGRWLKD           HNAQ+H                         
Sbjct:   167 PITATATQSKTVGRWLKDRREKKKEETRAHNAQIHAAVSVAGVAAAVAAIAAATAASSSC 226

Query:   240 XKDEHMAKTDMXXXXXXXXXXXXXXETAEAMGAEREHLXXXXXXXXXXXXXGDIMXXXXX 299
              KDE MAKTDM              E AE MGAERE+L             GDIM     
Sbjct:   227 GKDEQMAKTDMAVASAATLVAAQCVEAAEVMGAEREYLASVVSSAVNVRSAGDIMTLTAG 286

Query:   300 XXXXXXXXXXXXXXXXXEVWNIAAVIPVEKXXXXXXXXXXXXXXXXXXXXXXXX-ELVPE 358
                              EVWNIA+VIP++K                         ELV +
Sbjct:   287 AATALRGVQTLKARAMKEVWNIASVIPMDKGLTSTGGSSNNVNGSNGSSSSSHSGELVQQ 346

Query:   359 ENFLGICSRELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKK 418
             ENFLG CSRE LARGCELLKRTRKGDLHWKIVSVYIN++NQVMLKMKSRHV GT TKKKK
Sbjct:   347 ENFLGTCSREWLARGCELLKRTRKGDLHWKIVSVYINKMNQVMLKMKSRHVGGTFTKKKK 406

Query:   419 NVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLN 478
             N+VL+VI ++PAWPGRHLLEGG+D RYFGLKTV+RG VEFE +SQREY++WTQGV+RLL 
Sbjct:   407 NIVLDVIKNVPAWPGRHLLEGGDDLRYFGLKTVMRGDVEFEVKSQREYEMWTQGVSRLLV 466

Query:   479 VAAERSNR 486
             +AAER  R
Sbjct:   467 LAAERKFR 474
GO:0005634 "nucleus" evidence=ISM
GO:0009507 "chloroplast" evidence=ISM
GO:0007165 "signal transduction" evidence=ISS
GO:0035091 "phosphatidylinositol binding" evidence=ISS
TAIR|locus:2149514 AT5G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094414 AT3G22810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077294 FKD1 "FORKED 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230325 AT4G32785 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130888 AT4G17350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168943 AT5G47440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129031 AT4G16670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125667 AT4G32780 "AT4G32780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VIII1389
hypothetical protein (471 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
pfam05703226 pfam05703, Auxin_canalis, Auxin canalisation 8e-81
pfam08458110 pfam08458, PH_2, Plant pleckstrin homology-like re 1e-56
cd13365115 cd13365, PH_PLC_plant-like, Plant-like Phospholipa 1e-04
PRK13875440 PRK13875, PRK13875, conjugal transfer protein TrbL 5e-04
>gnl|CDD|218706 pfam05703, Auxin_canalis, Auxin canalisation Back     alignment and domain information 
 Score =  250 bits (639), Expect = 8e-81
 Identities = 139/316 (43%), Positives = 168/316 (53%), Gaps = 97/316 (30%)

Query: 21  PETPREPMEFLSRSWSVSAVEVSKALAPQHPQLILSKTPSSVIQEDLAAELEDQNGAVSG 80
           P+TP EPMEFLSRSWS+SA E+SKAL P                               G
Sbjct: 1   PQTPSEPMEFLSRSWSLSASEISKALHP---------------------------KVRQG 33

Query: 81  NPFSFACSETSQMIMERIMSQSQQDVSPRTSGRLSHSSGPLNGGGSLTDSPPVSPSEIDD 140
           +  SF  + TS ++M+RI                              DSPP+SP ++DD
Sbjct: 34  SELSFVGNRTSGLVMDRI------------------------SSQPDADSPPISPRKLDD 69

Query: 141 -VKFCRNNNNNSSANNIHGGYHHHQLNTGSTFRTPAAAASATPVAAAGGKTVGRWLKDRR 199
            VK  R N                                         KT+GRW   R+
Sbjct: 70  VVKLRRANG---------------------------------------RKTIGRWFHHRK 90

Query: 200 E-----KKKEEARVHNAQLHAAITVAGVAAAVAAIAAATAASSGSGKDEHMAKTDMAVAS 254
           E     KKK+EARV NAQ+HAA++VA VAAAVAA+ AAT ASS SG D   +K D A+AS
Sbjct: 91  ESSGNRKKKDEARVENAQVHAAVSVAAVAAAVAAVTAATNASS-SGGDGAGSKMDTALAS 149

Query: 255 AATLVAAQCVETAEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARA 314
           AA LVA+ CVE AE+ GA+R+ +A+ V SAV+VRS GD+MTLTA AATALRGAATLKARA
Sbjct: 150 AAALVASHCVEMAESAGADRDQVASAVRSAVDVRSPGDLMTLTAAAATALRGAATLKARA 209

Query: 315 LKEVWNIAAVIPVEKG 330
            KE  N AAV+PVEKG
Sbjct: 210 PKEARNNAAVLPVEKG 225

This domain is frequently found at the N-terminus of proteins containing pfam08458 at the C-terminus. It is a component of the auto-regulatory loop which enables auxin canalisation by recruitment of the PIN1 auxin efflux protein to the cell membrane. Length = 226
>gnl|CDD|219853 pfam08458, PH_2, Plant pleckstrin homology-like region Back     alignment and domain information
>gnl|CDD|241519 cd13365, PH_PLC_plant-like, Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 489
PF05703242 Auxin_canalis: Auxin canalisation; InterPro: IPR00 100.0
PF08458110 PH_2: Plant pleckstrin homology-like region; Inter 100.0
PF12814123 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin 97.23
smart00233102 PH Pleckstrin homology domain. Domain commonly fou 96.22
PF00169104 PH: PH domain; InterPro: IPR001849 The pleckstrin 95.73
cd0082196 PH Pleckstrin homology (PH) domain. Pleckstrin hom 94.68
cd0125094 PH_centaurin Centaurin Pleckstrin homology (PH) do 93.6
cd0122099 PH_CDEP Chondrocyte-derived ezrin-like domain cont 91.47
cd01219101 PH_FGD FGD (faciogenital dysplasia protein) plecks 90.62
cd0090099 PH-like Pleckstrin homology-like domain. Pleckstri 89.85
cd0126595 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain 84.49
cd01235101 PH_SETbf Set binding factor Pleckstrin Homology (P 84.25
cd01249104 PH_oligophrenin Oligophrenin Pleckstrin homology ( 84.24
cd01254121 PH_PLD Phospholipase D (PLD) pleckstrin homology ( 80.78
cd01233100 Unc104 Unc-104 pleckstrin homology (PH) domain. Un 80.72
>PF05703 Auxin_canalis: Auxin canalisation; InterPro: IPR008546 This domain consists of several plant proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=2.2e-88  Score=650.92  Aligned_cols=241  Identities=70%  Similarity=0.927  Sum_probs=213.0

Q ss_pred             CCCCCCccccccccccchhhhhhhhcCCCCCccccCCCCCccchhhhhhhhhccCCCcCCCCccccccchhhHHHHHHhh
Q 011274           21 PETPREPMEFLSRSWSVSAVEVSKALAPQHPQLILSKTPSSVIQEDLAAELEDQNGAVSGNPFSFACSETSQMIMERIMS  100 (489)
Q Consensus        21 PetP~epMEFLsRSWS~SA~evSkaL~~~~~~~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~f~fas~~tsq~vm~rim~  100 (489)
                      ||||+|||||||||||+||+||||+|.+.+..      ....+.+++..+...+ ....+++|+|++..++||||+|||+
T Consensus         1 PETP~EPMEFLSRSWSvSAsEVSKAL~~~s~~------~~ss~~~~~~~~~~~~-~~~~~~~~s~~~~~t~~lv~~~~~~   73 (242)
T PF05703_consen    1 PETPREPMEFLSRSWSVSASEVSKALSPPSNR------SISSFIDPEDAESDND-KDRFGSSFSFASSATSQLVMDRIMS   73 (242)
T ss_pred             CCCCcccHHHHHHhhhhhHHHHhhhcCCcccc------cccccccccchhcccc-ccccCCCCCcccccCcccccccccc
Confidence            89999999999999999999999999884322      1122223333333222 3346889999999999999999999


Q ss_pred             hcccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccchhh-hhhccCCCCCccccCCCcccccccCCccccccccccc
Q 011274          101 QSQQDVSPRTSGRLSHSSGPLNGGGSLTDSPPVSPSEIDDVK-FCRNNNNNSSANNIHGGYHHHQLNTGSTFRTPAAAAS  179 (489)
Q Consensus       101 ~s~~evsp~tsgrlshssgpl~gggs~t~spPisp~~~dd~~-~~r~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~  179 (489)
                      |+                       ..+++|||+|++++|.+ ++|.+                                
T Consensus        74 ~~-----------------------~~~~spp~sp~~~~~~~~~~~~~--------------------------------   98 (242)
T PF05703_consen   74 QS-----------------------SGADSPPISPRDLDDSKKIIRAN--------------------------------   98 (242)
T ss_pred             cc-----------------------cccCCCCcchhhHHHHHHHHHhc--------------------------------
Confidence            96                       14899999999888854 32222                                


Q ss_pred             cCcccccCCcchhhhhhhHHHHhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhhHHhhHHHHH
Q 011274          180 ATPVAAAGGKTVGRWLKDRREKKKEEARVHNAQLHAAITVAGVAAAVAAIAAATAASSGSGKDEHMAKTDMAVASAATLV  259 (489)
Q Consensus       180 ~~~~~~~~~~tvgrWlKd~keKKKEE~R~~nAqvHAAVSVAgVAAAVAAvAAata~ss~~~~d~~~ak~~~AvASAAaLV  259 (489)
                             +++||||||||+|+|||||+|+||||||||||||+||||||||+++++.+++++++++++||++||||||+||
T Consensus        99 -------~~~~i~~w~~~~~~kkkee~R~~~A~vhaAvSVA~vAaavAavaa~~~~~~~~~~~~~~~k~~~avASAa~Lv  171 (242)
T PF05703_consen   99 -------GGKTIGRWLKDRKEKKKEEARAHNAQVHAAVSVAGVAAAVAAVAAATAASSSSGKDESSSKMDAAVASAAALV  171 (242)
T ss_pred             -------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCccchhHHHHHHHHHHHHHH
Confidence                   4569999999999999999999999999999999999999999999998888888999999999999999999


Q ss_pred             HHHHHHHHHHcCCChhhHHHHHHhhhcccCCCchhhhhhHHHhhcchhhHHHHHhhhhhhhcceecccccC
Q 011274          260 AAQCVETAEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKG  330 (489)
Q Consensus       260 AaqCvE~AE~~GA~rd~vaSaV~SAV~vrspgDimTLTAaAATALRGAAtLKaR~~ke~~n~AaV~P~ek~  330 (489)
                      |+||||+||.|||+||||+++|+||||+|||||||||||+|||||||+||||+|++||+||+|+||||||+
T Consensus       172 Aa~C~e~Ae~~GA~~~~v~s~v~sav~~~s~gdi~TLTAaAATaLRGaa~Lk~R~~ke~~~~a~v~P~e~~  242 (242)
T PF05703_consen  172 AAQCAEAAEAAGADRDQVASAVRSAVNVRSPGDIMTLTAAAATALRGAATLKARAQKEARSNAAVLPYEKG  242 (242)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCchHHHHHHHHhhhhhcccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function Back     alignment and domain information
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis Back     alignment and domain information
>smart00233 PH Pleckstrin homology domain Back     alignment and domain information
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ] Back     alignment and domain information
>cd00821 PH Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain Back     alignment and domain information
>cd00900 PH-like Pleckstrin homology-like domain Back     alignment and domain information
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain Back     alignment and domain information
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain Back     alignment and domain information
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
2rlo_A128 Centaurin-gamma 1; split PH domain, alternative sp 94.32
1mai_A131 Phospholipase C delta-1; pleckstrin, inositol tris 93.86
4h8s_A407 DCC-interacting protein 13-beta; BAR domain, pleck 91.96
2dkp_A128 Pleckstrin homology domain-containing family A mem 91.89
2dn6_A115 KIAA0640 protein; PH domain, structural genomics, 91.84
2cod_A115 Centaurin-delta 1; ARF GAP and RHO GAP with ankyri 91.82
3aj4_A112 Pleckstrin homology domain-containing family B ME; 91.65
1wg7_A150 Dedicator of cytokinesis protein 9; pleckstrin hom 91.47
2d9y_A117 Pleckstrin homology domain-containing protein fami 90.72
2q13_A385 DCC-interacting protein 13 alpha; APPL1, BAR domai 90.55
1x1g_A129 Pleckstrin 2; PH domain, structural genomics, rike 90.54
2d9v_A130 Pleckstrin homology domain-containing protein fami 90.02
1u5d_A108 SKAP55, SRC kinase-associated phosphoprotein of 55 89.94
2lul_A164 Tyrosine-protein kinase TEC; structural genomics, 89.92
1fao_A126 Dual adaptor of phosphotyrosine and 3- phosphoinos 89.73
2dhk_A119 TBC1 domain family member 2; PH domain, paris-1, s 88.87
2i5f_A109 Pleckstrin; PH domain, protein-inositol phosphate 88.72
1u5f_A148 SRC-associated adaptor protein; PH domain of SKAP- 88.57
1wgq_A109 FYVE, rhogef and PH domain containing 6; ethanol d 88.02
3p6a_A377 RHO guanine nucleotide exchange factor 1; regulati 87.71
2yry_A122 Pleckstrin homology domain-containing family A mem 87.36
1eaz_A125 Tandem PH domain containing protein-1; lipid-bindi 87.28
1v5u_A117 SBF1, SET binding factor 1; MTMR5, the pleckstrin 87.16
2d9x_A120 Oxysterol binding protein-related protein 11; PH d 87.08
1upq_A123 PEPP1; PH domain, phosphoinositide binding, signal 86.62
1pls_A113 Pleckstrin homology domain; phosphorylation; NMR { 86.1
2lg1_A185 A-kinase anchor protein 13; metal binding protein; 85.21
2da0_A114 130-kDa phosphatidylinositol 4,5-biphosphate- depe 84.87
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 84.47
2cof_A107 Protein KIAA1914; PH domain, structural genomics, 83.93
1x05_A129 Pleckstrin; PH domain, structural genomics, NPPSFA 83.87
1wjm_A123 Beta-spectrin III; PH domain, signal transduction, 83.84
2rsg_A94 Collagen type IV alpha-3-binding protein; pleckstr 83.78
1btn_A106 Beta-spectrin; signal transduction protein; HET: I 82.52
3odw_A536 RHO guanine nucleotide exchange factor 1; regulati 81.22
2j59_M168 RHO-GTPase activating protein 10; ARF, ARF1, ARFBD 80.76
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Back     alignment and structure
Probab=94.32  E-value=0.28  Score=40.50  Aligned_cols=40  Identities=23%  Similarity=0.296  Sum_probs=34.3

Q ss_pred             CcceeeeeeecccceEEEEeCCcchhhhHHHHHHHHHHHH
Q 011274          441 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLNVA  480 (489)
Q Consensus       441 e~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~LL~~~  480 (489)
                      +...+|-|.|.+.....|.|+|..+.+.|++.|+..+..+
T Consensus        87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~  126 (128)
T 2rlo_A           87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILAS  126 (128)
T ss_dssp             CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence            4567899999875689999999999999999999877543
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1 Back     alignment and structure
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} Back     alignment and structure
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Back     alignment and structure
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Back     alignment and structure
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Back     alignment and structure
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Back     alignment and structure
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Back     alignment and structure
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Back     alignment and structure
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Back     alignment and structure
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Back     alignment and structure
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Back     alignment and structure
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Back     alignment and structure
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Back     alignment and structure
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Back     alignment and structure
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
d1maia_119 Phospholipase C delta-1 {Rat (Rattus norvegicus) [ 97.49
d1x1ga1116 Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} 96.39
d2i5fa1104 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 95.06
d1v5ma_136 SH2 and PH domain-containing adapter protein APS { 95.05
d1u5fa1111 Src-associated adaptor protein Skap2 {Mouse (Mus m 94.85
d1wg7a_150 Dedicator of cytokinesis protein 9, DOCK9 {Human ( 94.84
d1upqa_107 Phosphoinositol 3-phosphate binding protein-1, PEP 94.65
d1plsa_113 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 94.47
d2coda1102 Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96 93.76
d1u5da1106 Src kinase-associated phosphoprotein SKAP55 (SCAP1 93.42
d1zc3b1109 Exocyst complex protein EXO84 {Rat (Rattus norvegi 93.27
d1v5ua_117 SET binding factor 1, Sbf1 {Mouse (Mus musculus) [ 93.08
d1faoa_100 Dual adaptor of phosphotyrosine and 3-phosphoinosi 92.99
d1v89a_118 Rho-GTPase-activating protein 25 (KIAA0053) {Human 92.68
d1omwa2119 G-protein coupled receptor kinase 2 (beta-adrenerg 92.6
d1eaza_103 Tapp1 {Human (Homo sapiens) [TaxId: 9606]} 92.24
d1wi1a_126 Calcium-dependent activator protein for secretion, 92.22
d1btka_169 Bruton's tyrosine kinase {Human (Homo sapiens) [Ta 91.76
d1txda2114 Rho guanine nucleotide exchange factor 12 {Human ( 91.45
d1dbha2133 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 91.25
d1v61a_132 Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [ 91.19
d2elba2101 DCC-interacting protein 13-alpha, APPL1 {Human (Ho 90.92
d1u5ea1209 Src-associated adaptor protein Skap2 {Mouse (Mus m 90.28
d1ntya2121 Triple functional domain protein TRIO {Human (Homo 89.72
d1wgqa_109 FYVE, RhoGEF and PH domain containing protein 6, F 89.34
d2dfka2162 Rho guanine nucleotide exchange factor 9, Collybis 87.5
d1qqga1103 Insulin receptor substrate 1, IRS-1 {Human (Homo s 86.22
d1v5pa_126 Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} 85.91
d1droa_122 beta-spectrin {Fruit fly (Drosophila melanogaster) 85.85
d1unqa_118 Rac-alpha serine/threonine kinase {Human (Homo sap 85.25
d2j59m1133 Rho GTPase-activating protein 21 {Human (Homo sapi 82.11
d2fjla1101 Phosphoinositide phospholipase C, PLC-gamma-1 {Rat 81.41
d1btna_106 beta-spectrin {Mouse (Mus musculus), brain [TaxId: 80.87
>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=0.00021  Score=57.19  Aligned_cols=104  Identities=14%  Similarity=0.196  Sum_probs=65.1

Q ss_pred             HHHHhhccceeeeccCCceeeEEEEEEEcCccEEEEEeeccccccccccccccE----EEeeccC--CCCCCCcccccCC
Q 011274          367 RELLARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNV----VLEVIPD--MPAWPGRHLLEGG  440 (489)
Q Consensus       367 ~e~larG~eLlkrTrkG~lhwk~VSVyink~~qV~LKmKSkHv~GaftKKKK~V----V~~V~~d--~paWpgr~~~e~~  440 (489)
                      ...|.+|+.|+|.+++|.  +|.--++++.+++.+. =++..  ....++++.|    |..|...  .+.+  +..-+..
T Consensus         8 l~~l~~G~~l~K~~~~~~--~k~R~f~L~~d~~~i~-~~~~~--~~~~~~~~~i~i~~I~~V~~G~~s~~~--~~~~~~~   80 (119)
T d1maia_           8 LQALLKGSQLLKVKSSSW--RRERFYKLQEDCKTIW-QESRK--VMRSPESQLFSIEDIQEVRMGHRTEGL--EKFARDI   80 (119)
T ss_dssp             HHHHHHCEEEEEESSSSC--EEEEEEEECTTSSEEE-ECCCC--TTCCTTTTEEEGGGEEEEEESSCSHHH--HHHCTTS
T ss_pred             HHHHHcCCeEEEeCCCCC--CEEEEEEEcCCCCEEE-EeCCC--CCCCccceEEEHHHceEEEcCCCCchh--hhcccCC
Confidence            477999999999999883  3445688988887774 33322  0122222222    3333221  1100  1111122


Q ss_pred             Ccceeeeee--ecccceEEEEeCCcchhhhHHHHHHHHHH
Q 011274          441 EDRRYFGLK--TVLRGVVEFECRSQREYDIWTQGVARLLN  478 (489)
Q Consensus       441 e~r~YFglk--Ta~~GvvEFeC~sq~~~q~W~~gI~~LL~  478 (489)
                      .+.++|-|.  |.. ..+.|.|.|+.+++.|++||++||+
T Consensus        81 ~~~~~FsIv~~~~~-r~l~l~a~s~~~~~~Wv~~L~~L~~  119 (119)
T d1maia_          81 PEDRCFSIVFKDQR-NTLDLIAPSPADAQHWVQGLRKIIH  119 (119)
T ss_dssp             CGGGEEEEEESSSC-CCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CcCceEEEEEcCCC-cEEEEEECCHHHHHHHHHHHHHHhC
Confidence            345778764  554 6899999999999999999999973
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Back     information, alignment and structure
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Back     information, alignment and structure