Citrus Sinensis ID: 011279

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
ccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccEEEEEEEEcccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccEEEEEEEccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHcc
cHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHccccccccHHHHcccccccccccccccccccccccccccHccccccEEEEcccccEEEEEccccccEEEEEEEcccHHHcccccccHHHHHHHcccccEccccHHHHHHHHHHccccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHEccHHHccccccHHHcccccHHHHHHHHHHHccHHHEEEEEEcccHHHHHHHHHHHccccccccccccccccEcccEEEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHcEEEcccccccccccccHHHHHcccccccEEEEEEEEEEccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccc
MYRNAASRLRALKGhvrcrvpsatrfasssavastssssgglfswltgersssspsldfplpgvslppslpdyvepgktkistlpngvkiasetsvspvASISLYVGcgsiyespisfgTTHLLERMAFRSTRNRSHLRIVREVEAIggnvqasasreqmGYSFDALKTYVPEMLTKVKSEISEVSNNPQSLLLEAIHSAgysgalanpllapesAINRLNSTLLEEFvaenytgprmvlaasgvehdqlvsvaepllsdlpsihpreepksvytggdyrcqadsgdqLTHFVLAFelpggwhkdkdaMTLTVLQMLLggggsfsaggpgkgmYSRLYRRVLnefpqvqsfsafsniynhsgmfgiqgttgsdFVSKAIDLAARELIsvatpgevdqVQLDRAKQSTKSAILMNLESrmvvsedigrqvltygerkpveHFLKTVEGVTAKDIASVAQKLLsspltmasygdvinvpsydavsskfksk
myrnaasrlralkghvrcrvpsatrfasssavastssssgglFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVeaiggnvqasasreqMGYSFDALKTYVPEMLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPllsdlpsihpreepksvytGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISvatpgevdqvqldrakqstksailmnlesrmvvseDIGRQVltygerkpveHFLKTVEGVTAKDIASVAQKLLSSPLtmasygdvinvpsydavsskfksk
MYRNAASRLRALKGHVRCRVPsatrfasssavastssssgglfsWLTGERsssspsLDFplpgvslppslpDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLggggsfsaggpgkgMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
****************************************************************************************KIA**TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQ*******MGYSFDALKTYVPEMLTKV*************LLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPL***************VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEV**************AILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSY**********
*****************************************************************************KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLL*******************DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSA******MY*RLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFK**
********LRALKGHVRCRVPSAT****************GLFSWL************FPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYD*********
*YRNAASRLRALKGHVRCRVPSATRFASSSAVAS***************RSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSK****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query489 2.2.26 [Sep-21-2011]
P29677504 Mitochondrial-processing N/A no 0.987 0.958 0.696 0.0
Q9ZU25503 Probable mitochondrial-pr yes no 0.985 0.958 0.622 1e-169
O04308499 Probable mitochondrial-pr no no 0.977 0.957 0.612 1e-153
P11914482 Mitochondrial-processing yes no 0.803 0.815 0.340 3e-48
Q5R513525 Mitochondrial-processing no no 0.871 0.811 0.318 2e-47
Q10713525 Mitochondrial-processing yes no 0.871 0.811 0.326 2e-47
Q0P5M8525 Mitochondrial-processing yes no 0.869 0.809 0.317 2e-46
P22695453 Cytochrome b-c1 complex s no no 0.793 0.856 0.316 6e-46
P97997474 Mitochondrial-processing N/A no 0.791 0.816 0.317 2e-45
Q9DC61524 Mitochondrial-processing yes no 0.871 0.812 0.312 4e-45
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function desciption
 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/510 (69%), Positives = 417/510 (81%), Gaps = 27/510 (5%)

Query: 1   MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFP 60
           MYR A+SRL +LK     RV   TRF+SS+AVA+    SGGLFSW+TG+ SSS   LDFP
Sbjct: 1   MYRCASSRLSSLKARQGNRV--LTRFSSSAAVAT--KPSGGLFSWITGDTSSSVTPLDFP 56

Query: 61  LPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
           L  V L P LPDYVEP KT+I+TL NG+K+ASE SV+P ASI LYV CGSIYE+P S+G 
Sbjct: 57  LNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGA 116

Query: 121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEM------ 174
           THLLERMAF+ST NRSHLRIVRE+EAIGGNV ASASRE M Y++DALKTYVP+M      
Sbjct: 117 THLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLAD 176

Query: 175 ---------------LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 219
                          L KVK+EISE S NPQ LLLEA+HSAGY+G   N L+A E+ INR
Sbjct: 177 CVRNPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINR 236

Query: 220 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 279
           LNST+LEEFVAENYT PRMVLAASGVEH++ + VAEPLLSDLP +   EEPK VY GGDY
Sbjct: 237 LNSTVLEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDY 296

Query: 280 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYR 339
           RCQAD+  ++THF LAFE+PGGW  +K++MTLTVLQML+GGGGSFSAGGPGKGMYSRLY 
Sbjct: 297 RCQADA--EMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYL 354

Query: 340 RVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQ 399
           RVLN++PQ+ +FSAFS+IYN++G+FGIQGTT SDF  +A+D+A +ELI+VA P EVDQVQ
Sbjct: 355 RVLNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQ 414

Query: 400 LDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQK 459
           L+RAKQ+TKSAILMNLESRMV SEDIGRQ+LTYGER PVEHFLK ++ V+AKDIASV QK
Sbjct: 415 LNRAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQK 474

Query: 460 LLSSPLTMASYGDVINVPSYDAVSSKFKSK 489
           L+SSPLTMASYGDV+++PSYDAVSS+F+SK
Sbjct: 475 LISSPLTMASYGDVLSLPSYDAVSSRFRSK 504
This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 0EC: .EC: 2EC: .EC: 2
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1 Back     alignment and function description
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1 Back     alignment and function description
>sp|P11914|MPPA_YEAST Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAS2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R513|MPPA_PONAB Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2 Back     alignment and function description
>sp|Q10713|MPPA_HUMAN Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2 Back     alignment and function description
>sp|Q0P5M8|MPPA_BOVIN Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1 Back     alignment and function description
>sp|P22695|QCR2_HUMAN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3 Back     alignment and function description
>sp|P97997|MPPA_BLAEM Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1 Back     alignment and function description
>sp|Q9DC61|MPPA_MOUSE Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
356513189511 PREDICTED: mitochondrial-processing pept 0.991 0.949 0.752 0.0
225445041506 PREDICTED: mitochondrial-processing pept 0.991 0.958 0.764 0.0
356523720509 PREDICTED: mitochondrial-processing pept 0.991 0.952 0.748 0.0
356513191508 PREDICTED: mitochondrial-processing pept 0.993 0.956 0.750 0.0
357520795510 Mitochondrial-processing peptidase subun 0.995 0.954 0.746 0.0
217075747510 unknown [Medicago truncatula] gi|3885152 0.995 0.954 0.740 0.0
255546263507 mitochondrial processing peptidase alpha 0.993 0.958 0.735 0.0
449487989505 PREDICTED: mitochondrial-processing pept 0.989 0.958 0.731 0.0
225442426506 PREDICTED: mitochondrial-processing pept 0.991 0.958 0.729 0.0
449446550505 PREDICTED: mitochondrial-processing pept 0.989 0.958 0.729 0.0
>gi|356513189|ref|XP_003525296.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/514 (75%), Positives = 435/514 (84%), Gaps = 29/514 (5%)

Query: 1   MYRNAASRLRALKGHVRC----RVPSATRFASSSAVASTSSSS-GGLFSWLTGERSSSSP 55
           MYRNAASRLRA+K    C    RVP++ RFASS A   +SSS  GGLF WLTG+R+SS P
Sbjct: 1   MYRNAASRLRAIKAR-SCSSSSRVPASARFASSVATQQSSSSGLGGLFGWLTGDRTSSLP 59

Query: 56  SLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESP 115
           SL FPLPGV+LPP LPDYV PGKT I+TLPNG+K+ASETS SP ASI LYV CGSIYESP
Sbjct: 60  SLGFPLPGVTLPPPLPDYVAPGKTIITTLPNGLKVASETSPSPTASIGLYVDCGSIYESP 119

Query: 116 ISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEM- 174
           ISFG THLLERMAF++TRNRSH R+VREVEAIGGNVQASASREQMGY+FDALKTYVPEM 
Sbjct: 120 ISFGATHLLERMAFKTTRNRSHFRVVREVEAIGGNVQASASREQMGYTFDALKTYVPEMV 179

Query: 175 --------------------LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPE 214
                               L KVK+EI E S NPQ LLLEAIHSAG+SGALANPLLA E
Sbjct: 180 ELLVDCVRNPVFLDWEVNEQLLKVKAEIGEASKNPQDLLLEAIHSAGFSGALANPLLASE 239

Query: 215 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVY 274
           SA+NRLNST+LEEFVAENYT PR+VLAASGVEH++L+S+AEPLLSDLPS+   EEPKSVY
Sbjct: 240 SAVNRLNSTILEEFVAENYTAPRIVLAASGVEHEELLSIAEPLLSDLPSVPRPEEPKSVY 299

Query: 275 TGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY 334
           TGGDYRCQ +SG   THF LAFELPGGWHK KDAM LTVLQMLLGGGGSFSAGGPGKGMY
Sbjct: 300 TGGDYRCQKESGR--THFALAFELPGGWHKLKDAMVLTVLQMLLGGGGSFSAGGPGKGMY 357

Query: 335 SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE 394
           SRLY+ VLNE+PQV   SAF+NIYN +G+FGIQ TTGSDFVSKAID+AA E+++VATPG+
Sbjct: 358 SRLYQNVLNEYPQVHEISAFNNIYNDTGIFGIQVTTGSDFVSKAIDIAANEILAVATPGQ 417

Query: 395 VDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIA 454
           VDQVQLDRAKQ+TKSAILMNLESRMVVSEDIGRQ+LTYGERKPVE FLK V+ VT+KDI 
Sbjct: 418 VDQVQLDRAKQATKSAILMNLESRMVVSEDIGRQILTYGERKPVEDFLKAVDEVTSKDIT 477

Query: 455 SVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKS 488
           S+++KL+ SPLTMASYGDV+ VPSY++VS KF++
Sbjct: 478 SISRKLICSPLTMASYGDVLYVPSYESVSLKFRA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445041|ref|XP_002283310.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297738729|emb|CBI27974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523720|ref|XP_003530483.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356513191|ref|XP_003525297.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357520795|ref|XP_003630686.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] gi|355524708|gb|AET05162.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|217075747|gb|ACJ86233.1| unknown [Medicago truncatula] gi|388515299|gb|AFK45711.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255546263|ref|XP_002514191.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] gi|223546647|gb|EEF48145.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449487989|ref|XP_004157901.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225442426|ref|XP_002283426.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297743169|emb|CBI36036.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449446550|ref|XP_004141034.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
TAIR|locus:2034096503 AT1G51980 [Arabidopsis thalian 0.640 0.622 0.589 1.7e-139
TAIR|locus:2088309499 MPPalpha "mitochondrial proces 0.640 0.627 0.574 1.4e-133
FB|FBgn0033235556 CG8728 [Drosophila melanogaste 0.595 0.523 0.350 1.1e-56
ZFIN|ZDB-GENE-030131-5809517 pmpca "peptidase (mitochondria 0.629 0.595 0.306 6e-50
GENEDB_PFALCIPARUM|PFE1155c534 PFE1155c "mitochondrial proces 0.588 0.539 0.306 8.9e-49
UNIPROTKB|Q8I3N3534 PFE1155c "Mitochondrial proces 0.588 0.539 0.306 8.9e-49
ZFIN|ZDB-GENE-030131-1269454 uqcrc2b "ubiquinol-cytochrome 0.619 0.667 0.285 1.6e-47
UNIPROTKB|P22695453 UQCRC2 "Cytochrome b-c1 comple 0.615 0.664 0.296 6.8e-47
UNIPROTKB|F1P582457 UQCRC2 "Uncharacterized protei 0.615 0.658 0.296 2.3e-46
UNIPROTKB|Q5ZJ49519 PMPCA "Uncharacterized protein 0.629 0.593 0.296 7.6e-46
TAIR|locus:2034096 AT1G51980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 944 (337.4 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
 Identities = 187/317 (58%), Positives = 242/317 (76%)

Query:   171 VPEMLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVA 230
             V E L K+K EI+E++ NP   LLEAIHSAGYSG LA+PL APESA++RLN  LLEEF+ 
Sbjct:   191 VNEELRKMKVEIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDRLNGELLEEFMT 250

Query:   231 ENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLT 290
             EN+T  RMVLAASGVEH++L+ VAEPL SDLP++ P+  PKS Y GGD+R    +G + T
Sbjct:   251 ENFTAARMVLAASGVEHEELLKVAEPLTSDLPNVPPQLAPKSQYVGGDFR--QHTGGEAT 308

Query:   291 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 350
             HF +AFE+PG W+ +K+A+T TVLQML+              M+S LYRRVLNE+ +VQS
Sbjct:   309 HFAVAFEVPG-WNNEKEAVTATVLQMLMGGGGSFSAGGPGKGMHSWLYRRVLNEYQEVQS 367

Query:   351 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 410
              +AF++I+N +G+FGI G +   F +KAI+LAA+EL  VA  G+V+Q  LDRAK +TKSA
Sbjct:   368 CTAFTSIFNDTGLFGIYGCSSPQFAAKAIELAAKELKDVAG-GKVNQAHLDRAKAATKSA 426

Query:   411 ILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASY 470
             +LMNLESRM+ +EDIGRQ+LTYGERKPV+ FLK+V+ +T KDIA    K++S PLTM S+
Sbjct:   427 VLMNLESRMIAAEDIGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSKVISKPLTMGSF 486

Query:   471 GDVINVPSYDAVSSKFK 487
             GDV+ VPSYD +SSKF+
Sbjct:   487 GDVLAVPSYDTISSKFR 503
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2088309 MPPalpha "mitochondrial processing peptidase alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0033235 CG8728 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5809 pmpca "peptidase (mitochondrial processing) alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE1155c PFE1155c "mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I3N3 PFE1155c "Mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1269 uqcrc2b "ubiquinol-cytochrome c reductase core protein IIb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P22695 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P582 UQCRC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ49 PMPCA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9DC61MPPA_MOUSE3, ., 4, ., 2, 4, ., 6, 40.31210.87110.8129yesno
Q0P5M8MPPA_BOVIN3, ., 4, ., 2, 4, ., 6, 40.31770.86910.8095yesno
P29677MPPA_SOLTU1, ., 1, 0, ., 2, ., 20.69600.98770.9583N/Ano
Q4W6B5MPPB_DICDI3, ., 4, ., 2, 4, ., 6, 40.30940.82000.8550yesno
P11914MPPA_YEAST3, ., 4, ., 2, 4, ., 6, 40.34000.80360.8153yesno
Q9ZU25MPPA1_ARATH3, ., 4, ., 2, 4, ., 6, 40.62200.98560.9582yesno
Q10713MPPA_HUMAN3, ., 4, ., 2, 4, ., 6, 40.32690.87110.8114yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.640.991
3rd Layer3.4.240.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016635001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (506 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021058001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (523 aa)
  ••••••0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 3e-50
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 5e-31
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 1e-29
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  177 bits (450), Expect = 3e-50
 Identities = 105/421 (24%), Positives = 172/421 (40%), Gaps = 53/421 (12%)

Query: 78  KTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS 136
             ++ TLPNG+++ +     +P  S+ ++V  GS  E     G  H LE MAF+ T    
Sbjct: 16  GLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLP 75

Query: 137 HLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEML-----------------TKVK 179
              +    E +GG + A  S +   Y    L   + + L                  + K
Sbjct: 76  SAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREK 135

Query: 180 ----SEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYT 234
                EI    ++P  L  E +  A Y    L  P+L  E +I  +    L++F  + Y 
Sbjct: 136 GVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWYQ 195

Query: 235 GPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRC-----QADSGDQ 288
              MVL   G V+ +++V + E    DLP   P  +       G  R            +
Sbjct: 196 PDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLE 255

Query: 289 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV 348
                L +  P  +    D   L +L  LLGG           G  SRL++ +  +    
Sbjct: 256 QAWLALGYPGP-DYDSPDDYAALLLLNGLLGG-----------GFSSRLFQELREKRGLA 303

Query: 349 QSFSAFSNIYNHSGMFGIQGTTG-------SDFVSKAIDLAARELISVATPGEVDQVQLD 401
            S S+FS+  + SG+F I   T        ++ V + +    + L    T  E     LD
Sbjct: 304 YSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEE-----LD 358

Query: 402 RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLL 461
            AKQ     +L++L+S   ++E +G+ +L  G    +E  L+ +E VT +D+ +VA+KLL
Sbjct: 359 AAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLL 418

Query: 462 S 462
           +
Sbjct: 419 A 419

Length = 438
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 489
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
PRK15101961 protease3; Provisional 99.97
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.96
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.96
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.91
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.89
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.82
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.8
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.76
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.75
PTZ004321119 falcilysin; Provisional 99.7
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.7
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 99.56
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 99.55
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 98.67
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 98.0
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 97.99
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 97.98
PHA03081 595 putative metalloprotease; Provisional 97.64
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 97.21
KOG0960 467 consensus Mitochondrial processing peptidase, beta 96.82
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 96.55
KOG2067 472 consensus Mitochondrial processing peptidase, alph 93.99
PF0985131 SHOCT: Short C-terminal domain; InterPro: IPR01864 81.22
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-89  Score=640.15  Aligned_cols=425  Identities=48%  Similarity=0.745  Sum_probs=395.3

Q ss_pred             CCCcCCCCCCCCCCCCCCCCCCceEEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCC
Q 011279           56 SLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR  135 (489)
Q Consensus        56 ~~~~plp~~~~p~~~~~~~~~~~~~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~  135 (489)
                      |+.+++|    |++..+. ++.++++++|+||+||++++++++.++++++|++|++||.+...|++||+|+|+|++|.++
T Consensus         7 ~l~e~lP----p~~~~d~-~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~   81 (472)
T KOG2067|consen    7 PLIEVLP----PKSTADP-EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERF   81 (472)
T ss_pred             ccccCCC----CcccCCc-ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCC
Confidence            5555554    3323344 6679999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHcCCeeeEeeccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHH
Q 011279          136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLL  194 (489)
Q Consensus       136 s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~  194 (489)
                      +..++.++||.+||+++|+++||++.|.+++.+++++.|+                     ..|+.|++....+|+.++.
T Consensus        82 ~~~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~  161 (472)
T KOG2067|consen   82 SSKEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLT  161 (472)
T ss_pred             cHHHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHH
Confidence            9999999999999999999999999999999999999888                     4556677788899999999


Q ss_pred             HHHHHHhc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEecCCHHHHHHHHHHhhCCCCCCCCC--CCCC
Q 011279          195 EAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR--EEPK  271 (489)
Q Consensus       195 ~~l~~~~~-~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivGvd~~~l~~~i~~~~~~lp~~~~~--~~~~  271 (489)
                      +++|+++| +++++.|.+|+.+.+++|+.+.|++|.+++|+|+||+++.|||+||++++.+++||++||+...+  ..++
T Consensus       162 e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~  241 (472)
T KOG2067|consen  162 EMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESK  241 (472)
T ss_pred             HHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccch
Confidence            99999999 99999999999999999999999999999999999999999999999999999999999985443  3456


Q ss_pred             CCcCCCceEEecCC-----CCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCC
Q 011279          272 SVYTGGDYRCQADS-----GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFP  346 (489)
Q Consensus       272 ~~~~~~~~~~~~~~-----~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g  346 (489)
                      .+|+||...+..|.     ....+||.++|++++  ++++|+++++|||.+|||||||||||||||||||||.+|.++++
T Consensus       242 aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~  319 (472)
T KOG2067|consen  242 AQYTGGELKIDTDAPQVTGGPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYH  319 (472)
T ss_pred             hhccccccccCCCCccccCccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhH
Confidence            79999976665432     127899999999997  58889999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 011279          347 QVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIG  426 (489)
Q Consensus       347 ~~y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~  426 (489)
                      |+|+|.||++.|.|+|+|+|+++++|+++.++++.+.+|+..+.. | ++++||+|||+++++.++||+|++...+++++
T Consensus       320 wv~sctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDvG  397 (472)
T KOG2067|consen  320 WVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDVG  397 (472)
T ss_pred             HHHHhhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHHh
Confidence            999999999999999999999999999999999999999999976 4 99999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHhcCCHHHHHHHHHHhccCCceEEEEcCCCCCCCHHHHHHHhhcC
Q 011279          427 RQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK  489 (489)
Q Consensus       427 ~~~~~~g~~~~~~~~~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~~~~lp~~~~~~~~~~~~  489 (489)
                      ||++.+|.+++++++++.|+++|++||.++++++|..+++++..||..++|+|+.+.+++++|
T Consensus       398 RQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~~p~va~~Gd~~~lpt~~~i~~~~~~~  460 (472)
T KOG2067|consen  398 RQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTGKPSVAAFGDGTGLPTYDHIGNAVSSG  460 (472)
T ss_pred             HHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcCCceeccCCcccCCcchhhhhhhcccC
Confidence            999999999999999999999999999999999999999999999999999999999998764

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
1hr6_A475 Yeast Mitochondrial Processing Peptidase Length = 4 3e-47
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 1e-44
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 9e-44
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 2e-43
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 5e-41
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 2e-40
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 2e-40
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-40
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 3e-36
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 4e-36
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 4e-36
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 1e-34
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 2e-33
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 6e-33
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 7e-27
1ezv_B352 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 5e-09
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 2e-08
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 2e-08
1ezv_A430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 8e-07
1kb9_A431 Yeast Cytochrome Bc1 Complex Length = 431 7e-06
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (472), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 136/444 (30%), Positives = 219/444 (49%), Gaps = 51/444 (11%)
Query: 80  KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
           K+S+L NG+K+A+  +    +++ LY+  GS +E     G TH+L+R+AF+ST +     
Sbjct: 7   KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA 66
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLT---------------------KV 178
           +   +E +GGN Q ++SRE + Y        V +ML                        
Sbjct: 67  MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSA 126
Query: 179 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPR 237
           + EI EV   P+ +L E +H+A YSG  L +PL+ P   I  ++   L ++  + YT   
Sbjct: 127 EYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN 186
Query: 238 MVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADS---GD--QLTH 291
            V A  GV H++ + +    L D  S HP    K + YTGG+  C   +   G+  +L H
Sbjct: 187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGE-SCIPPAPVFGNLPELFH 245
Query: 292 FVLAFE-LPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 350
             + FE LP       D   L  LQ LL              MYSRLY  VLN++  V++
Sbjct: 246 IQIGFEGLP---IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVEN 302
Query: 351 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE--VDQVQLDRAKQSTK 408
             AF++ Y+ SG+FGI  +       +A+++ A+++ +     +  + + ++ RAK   K
Sbjct: 303 CVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLK 362
Query: 409 SAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMA 468
           S++LMNLES++V  ED+GRQVL +G + PV   +  +E +   DI+ VA+ + +  +  A
Sbjct: 363 SSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNA 422
Query: 469 ----------------SYGDVINV 476
                           S+GDV NV
Sbjct: 423 GNGKGRATVVMQGDRGSFGDVENV 446
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 352 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-162
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 1e-158
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 1e-146
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 1e-146
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 1e-132
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-104
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 1e-92
3eoq_A406 Putative zinc protease; two similar domains of bet 2e-87
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 2e-49
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 7e-48
3gwb_A434 Peptidase M16 inactive domain family protein; pept 1e-41
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 1e-33
3go9_A492 Insulinase family protease; IDP00573, structural g 3e-29
3ih6_A197 Putative zinc protease; bordetella pertussis toham 1e-15
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 4e-13
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 1e-11
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
 Score =  465 bits (1199), Expect = e-162
 Identities = 122/450 (27%), Positives = 206/450 (45%), Gaps = 32/450 (7%)

Query: 54  SPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYE 113
           S  +   +     P  +P    P   + + LPNG+ IAS  + +P + I L++  GS YE
Sbjct: 1   SLKVAPKVKATEAPAGVPP--HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYE 58

Query: 114 SPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPE 173
           +  + GT+HLL   +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  
Sbjct: 59  NSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDI 118

Query: 174 ML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLA 212
           ++                      +++ + +    NPQ+ ++E +H+A Y  ALAN L  
Sbjct: 119 LMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYC 178

Query: 213 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKS 272
           P+  I ++    L ++V  ++T  RM L   GV H  L  VAE  L+    +       +
Sbjct: 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAK-A 237

Query: 273 VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG 332
            Y GG+ R Q      L H  L  E         +A   +VLQ +LG G        G  
Sbjct: 238 KYHGGEIREQNGD--SLVHAALVAE--SAAIGSAEANAFSVLQHVLGAG---PHVKRGSN 290

Query: 333 MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATP 392
             S LY+ V     Q    SAF+  Y+ SG+FG    + +      I  A  ++ ++A  
Sbjct: 291 ATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ- 349

Query: 393 GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKD 452
           G +    +  AK   K+  LM++ES     +++G Q L  G   P    L+ ++ V   D
Sbjct: 350 GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADAD 409

Query: 453 IASVAQKLLSSPLTMASYGDVINVPSYDAV 482
           + + A+K +S   +MA+ G++ + P  D +
Sbjct: 410 VINAAKKFVSGRKSMAASGNLGHTPFIDEL 439
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 99.98
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 99.97
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.94
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.93
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.16
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 98.15
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 98.13
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 98.11
3eoq_A 406 Putative zinc protease; two similar domains of bet 98.11
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 98.02
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 97.97
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 97.97
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.93
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 97.93
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 97.91
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 97.89
3ih6_A197 Putative zinc protease; bordetella pertussis toham 96.24
3go9_A 492 Insulinase family protease; IDP00573, structural g 94.87
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
Probab=100.00  E-value=6e-62  Score=507.06  Aligned_cols=408  Identities=34%  Similarity=0.552  Sum_probs=371.8

Q ss_pred             CceEEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeec
Q 011279           77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS  156 (489)
Q Consensus        77 ~~~~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  156 (489)
                      +.+++++|+||++|++.+.+.+.+++++++++|+++|++...|++||+|||+|+||++++..++.+.++..|+.++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~   83 (475)
T 1hr6_A            4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (475)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence            57899999999999988888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCCCh
Q 011279          157 REQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE  214 (489)
Q Consensus       157 ~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~~  214 (489)
                      ++.+.|++++++++++.+|                     ..+.+|++...++|...+.+.++..+| ++||+++.+|+.
T Consensus        84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~  163 (475)
T 1hr6_A           84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (475)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence            9999999999999999888                     567778888789999999999999999 999999999999


Q ss_pred             hhhccCCHHHHHHHHHhhCCCCCeEEEEecCCHHHHHHHHHHhhCCCCCCCCC-CCCCCCcCCCceEEecC----CCCCc
Q 011279          215 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQAD----SGDQL  289 (489)
Q Consensus       215 ~~l~~i~~~~l~~f~~~~y~~~~~~l~ivGvd~~~l~~~i~~~~~~lp~~~~~-~~~~~~~~~~~~~~~~~----~~~~~  289 (489)
                      +.|++++.++|++||++||.|+||+++++|+++++++++++++|+.||....+ ....+.+.++..++...    .+.++
T Consensus       164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (475)
T 1hr6_A          164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL  243 (475)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred             HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence            99999999999999999999999999999999999999999999999865443 21223444544444421    23378


Q ss_pred             eEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEE
Q 011279          290 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT  369 (489)
Q Consensus       290 ~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~  369 (489)
                      +++.++|.+++  .+.++..++.|++.+||++++||+|||||||.++||++||++.|++|++.++...+.+.|.|.|++.
T Consensus       244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~  321 (475)
T 1hr6_A          244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS  321 (475)
T ss_dssp             EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred             eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence            99999999876  5778999999999999999999999999999999999999999999999999888888899999999


Q ss_pred             eCcccHHHHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Q 011279          370 TGSDFVSKAIDLAARELISVAT---PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVE  446 (489)
Q Consensus       370 ~~p~~~~~~i~~~~~el~~l~~---~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~  446 (489)
                      ++|+++.++++.+.+++.++.+   .| +|++||+++|++++.++...++++..+++.++++++.+|.+.+.+++.+.|+
T Consensus       322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~  400 (475)
T 1hr6_A          322 CIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIE  400 (475)
T ss_dssp             ECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             eCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            9999999999999999999987   56 9999999999999999999999999999999998766787767889999999


Q ss_pred             cCCHHHHHHHHHHhccC----------CceEEEEcCCCCCCCHHHHHHHhh
Q 011279          447 GVTAKDIASVAQKLLSS----------PLTMASYGDVINVPSYDAVSSKFK  487 (489)
Q Consensus       447 ~vT~edI~~~a~~~l~~----------~~~~~v~G~~~~lp~~~~~~~~~~  487 (489)
                      +||++||++++++||..          +++++++|+..++|+++++.+.+.
T Consensus       401 ~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~  451 (475)
T 1hr6_A          401 DLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG  451 (475)
T ss_dssp             TCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence            99999999999999975          799999999999999999988875
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 489
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 3e-42
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 7e-41
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 4e-40
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 3e-39
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 2e-36
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 7e-29
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 7e-24
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 1e-22
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 1e-20
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 2e-18
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 8e-16
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 3e-15
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 6e-12
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 9e-09
d2fgea2196 d.185.1.1 (A:798-993) Presequence protease 1, PREP 3e-06
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  147 bits (371), Expect = 3e-42
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 8/212 (3%)

Query: 271 KSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPG 330
           K+ Y GG+ R Q    D L H  L  E         +A   +VLQ +LG G     G   
Sbjct: 1   KAKYHGGEIREQNG--DSLVHAALVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS-- 54

Query: 331 KGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVA 390
               S LY+ V     Q    SAF+  Y+ SG+FG    + +      I  A  ++ ++A
Sbjct: 55  -NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIA 113

Query: 391 TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTA 450
             G +    +  AK   K+  LM++ES     +++G Q L  G   P    L+ ++ V  
Sbjct: 114 -QGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVAD 172

Query: 451 KDIASVAQKLLSSPLTMASYGDVINVPSYDAV 482
            D+ + A+K +S   +MA+ G++ + P  D +
Sbjct: 173 ADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 204
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.97
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.97
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.97
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.97
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.95
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.94
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.8
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.72
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 99.55
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.39
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 98.64
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 98.62
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.6
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 98.56
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 98.52
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.49
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.3
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 98.28
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 98.07
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 97.96
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 97.92
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 97.31
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 97.16
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 97.15
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 96.3
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 95.87
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 95.66
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 95.29
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 94.04
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-34  Score=262.47  Aligned_cols=203  Identities=28%  Similarity=0.418  Sum_probs=189.9

Q ss_pred             CCcCCCceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEE
Q 011279          272 SVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSF  351 (489)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~  351 (489)
                      +.|.||+++...+.  +++++.++|++|+  ..++|++++.||+.+||+|.+++.   |.+|.||||++||++.|++|++
T Consensus         2 ~~y~Gge~r~~~~~--~q~~i~~~~~~~~--~~~~d~~al~vl~~iLG~g~~~~~---g~~~sSrL~~~lre~~gl~y~~   74 (204)
T d1ppjb2           2 AKYHGGEIREQNGD--SLVHAALVAESAA--IGSAEANAFSVLQHVLGAGPHVKR---GSNATSSLYQAVAKGVHQPFDV   74 (204)
T ss_dssp             CCBCCEEEEEECCC--SEEEEEEEEECCC--TTSHHHHHHHHHHHHHCCSCSBTT---CCCTTCHHHHHHHHHCCSCEEE
T ss_pred             CeeECCeEEEECCC--CceEEEEEeccCC--CCCchHHHHHHHHHHhcCCccccC---CCCCCCHHHHHHHHhcCCccch
Confidence            57889999888877  8999999999997  688999999999999998765544   5567799999999999999999


Q ss_pred             EEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 011279          352 SAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT  431 (489)
Q Consensus       352 ~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~  431 (489)
                      .+++..+.+.|+|.|++.|+|+++.++++.+.++|.++++.| +|++||+++|+.++.++.+.++++..+++.++++++.
T Consensus        75 ~s~~~~~~d~G~f~i~~~~~~~~~~~~~~~i~~el~~l~~~~-it~~eL~~aK~~l~~~~~~~~es~~~~a~~l~~~~l~  153 (204)
T d1ppjb2          75 SAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGN-LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALA  153 (204)
T ss_dssp             EEEEEECSSCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred             hhhccccccccceEEEEecCcccchhHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHhHHhccccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999887 9999999999999999999999999999999999888


Q ss_pred             cCCCCCHHHHHHHHhcCCHHHHHHHHHHhccCCceEEEEcCCCCCCCHHHH
Q 011279          432 YGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV  482 (489)
Q Consensus       432 ~g~~~~~~~~~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~~~~lp~~~~~  482 (489)
                      .+.+.+.+++.+.|++||++||+++|++||.++++++++||..++|.+|+|
T Consensus       154 ~g~~~~~~~~~~~i~~VT~edv~~~a~kyl~~~~tv~vvG~~~~~p~~~~l  204 (204)
T d1ppjb2         154 AGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL  204 (204)
T ss_dssp             TSSCCCHHHHHHHHHTCCHHHHHHHHHHHHHSCEEEEEEECCTTCCCGGGC
T ss_pred             CCCCCCHHHHHHHHHCCCHHHHHHHHHHHccCCCEEEEECCcccCCCcccC
Confidence            888888999999999999999999999999988999999999999999875
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure