Citrus Sinensis ID: 011319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MDKNQQQQSDSPTRDPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRRNCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRLRAASLPTMPLPSEVRLARQPNENQIQPLPAEVPNDNEIRNNRERKLERDTAGEVSFRFHDFALKNNWV
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEcccccccccccccccccccEEEEEEEccccccccccccccEEEccccccHHHHHHHHHHHccccccEEEEEEEccccccccEEEEEEccccccccEEEEEEccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEcEEEEEccccccEEEEEEEEcccEEEEEEEEcccccccccHHHHHHHHHHHHHcccEEEEEEEcccEEcccEEcccccEEEcccccccHHHcccccccccEEEEEEEEccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEEEccccccccccccccccccEEEEEEEccccccccccccccEEEccccccHHHHHHHHHHHHcccccEEEEEEEccccHHHHHEEEEcccHcccccEEEEEEcccccEEEEEEcccHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHccHHHcHHccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHcccccccccccccccccHHHHHHcccccccccccccEEEEEEEEEEEcccccccEEEEEccccccEEEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHHHcccEEEEEEEcccEEEEEEEEccccEEEcccccHHHHHHHHHHccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEccccccEEEEEccccccccc
Coil and Loop (DISEMBL)
mdknqqqqsdsptrdpksytvlsidclkgtskadEWTAdmlqtgdiveeftigggsglgsgsgscrtykapfkngrsgVQKILHGSFKNKETSILVRVRRGAEEFAELQAcivpesggrrncymlrsitdpnyaagftdrtEADCLELLASRSSRIVSALARARLQEgyvsypwerrkqevlsvpnsscflsmlllpkasdvvasrYNDVEDTLARANAWLnasqatgvpivFMNIQTESLLTKISgetasstvnsgslsdlsnvanaslygfedyhgvdLGVVRAVRLWYAPVGGELAIEIKLkegdsklgfaISRTEEGFIYIStvidddenipstrsgLSILYKEAVSASKLLVVSRVsnqkvlpwivsstgavrcfdtvslsqklslhrhakVPILLHVFLWDqalastsgsstrlraaslptmplpsevrlarqpnenqiqplpaevpndneirnnrerklerdtagevsfrfhdfalknnwv
Flexible Loop (DISEMBL)
mdknqqqqsdsptrdpksytVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKIlhgsfknketsILVRVRRGAEEFAELqacivpesggrrnCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEgyvsypwerrkQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTKISGETAsstvnsgslsdLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEiklkegdsKLGFAISRTEEGFIYIstvidddenipSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRLRAASLPTMPLPSEVRLARqpnenqiqplpaevpndneirnnrerklerdtagevsfrfhdfalknnwv
Low Complexity Region (SEG)
MDKNQQQQSDSPTRDPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIgggsglgsgsgsCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRRNCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRLRAASLPTMPLPSEVRLARQPNENQIQPLPAEVPNDNEIRNNRERKLERDTAGEVSFRFHDFALKNNWV
Disordered region (IsUnstruct)
******************YTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLG****SCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRRNCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTKI****************LSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQAL*****************************************************************FRFHDFA******
Disordered Region (DISOPRED)
***********************I****************LQTGDIVEEFTIGGG********SCRTYKAPFKNG*SG***********KE*******************************YMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTK*************SLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDD********SGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQ***************************************************************GEVSFRFHDFALKNNWV
Disordered Region (DISEMBL)
****************KSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRRNCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRLRAASLPTMPLPSEVRLARQPNENQIQPLPAEVPNDNEIRNNRERKLERDTAGEVSFRFHDFALKNNWV
Disordered Region (DISPRO)
*****************SYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGS*******SCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRRNCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTKISGETASS***SGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQA****************************************************RERKLERDTAGEVSFRFHDFALKNN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKNQQQQSDSPTRDPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRRNCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRLRAASLPTMPLPSEVRLARQPNENQIQPLPAEVPNDNEIRNNRERKLERDTAGEVSFRFHDFALKNNWV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
225435520	475	PREDICTED: uncharacterized protein LOC10	0.936	0.962	0.739	0.0
357454367	482	hypothetical protein MTR_2g098340 [Medic	0.979	0.991	0.702	0.0
255544788	503	conserved hypothetical protein [Ricinus	0.991	0.962	0.708	0.0
356541876	487	PREDICTED: uncharacterized protein LOC10	0.979	0.981	0.696	0.0
147862094	505	hypothetical protein VITISV_018651 [Viti	0.938	0.906	0.689	0.0
255638682	487	unknown [Glycine max]	0.979	0.981	0.690	0.0
356538927	483	PREDICTED: uncharacterized protein LOC10	0.946	0.956	0.721	0.0
356550349	478	PREDICTED: uncharacterized protein LOC10	0.973	0.993	0.705	0.0
356557487	482	PREDICTED: uncharacterized protein LOC10	0.979	0.991	0.704	0.0
449448758	483	PREDICTED: uncharacterized protein LOC10	0.965	0.975	0.683	0.0

>gi|225435520|ref|XP_002285555.1| PREDICTED: uncharacterized protein LOC100263843 [Vitis vinifera]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/472 (73%), Positives = 401/472 (84%), Gaps = 15/472 (3%)

Query: 21  VLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQ 80
           VLSI+CLKG+SK DEWT DMLQTGDIVEE  IG    +          +APFKNG+ GVQ
Sbjct: 15  VLSIECLKGSSKGDEWTGDMLQTGDIVEEIKIGNSVSV----------RAPFKNGKVGVQ 64

Query: 81  KILHGSFKNKETSILVRVRRGAEEFAELQACIVP-ESGGRRNCYMLRSITDPNYAAGFTD 139
           ++LH SFK+++TSI VRVRRG +E AELQACIVP ES G++  YMLR+I DPNYA GF D
Sbjct: 65  RLLHSSFKSRDTSIQVRVRRGDDELAELQACIVPNESAGKKQ-YMLRAIDDPNYAVGFCD 123

Query: 140 RTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQEVLSVPNSSCFLSMLLLPKA 199
           RTE++C  L ASR+SR+VSAL R +LQ+GYV+YPW R+ QE LSVPNSSCFLS+LLLPK+
Sbjct: 124 RTESECFALQASRNSRMVSALTRTQLQDGYVAYPWGRKMQEFLSVPNSSCFLSILLLPKS 183

Query: 200 SDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTKISGETASSTVN-SGS 258
           SD  ASRYND+EDTLARANAWL ASQ+ GVP+VFMNI TESLLTKISGETASSTVN +GS
Sbjct: 184 SDRAASRYNDLEDTLARANAWLTASQSAGVPVVFMNIHTESLLTKISGETASSTVNIAGS 243

Query: 259 LSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFAISRT 318
           LSDL+N+ANASLYGFEDYHGVD+GVVRAVRLWYAP+G E  +EIK+KE D+KLGFAISRT
Sbjct: 244 LSDLANLANASLYGFEDYHGVDIGVVRAVRLWYAPLGCEFPMEIKIKESDTKLGFAISRT 303

Query: 319 EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVR 378
           EEGFIYIS+VID D+N PSTRSGLS LYKEA++ASKLLVVSRVSNQKVLPW+VSSTGA+R
Sbjct: 304 EEGFIYISSVIDGDDNAPSTRSGLSNLYKEAMAASKLLVVSRVSNQKVLPWMVSSTGAIR 363

Query: 379 CFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRLRAASL-PTMPLPSEVRLA 437
           CFDTVSLSQKLSLHRHAKVPIL+HVFLW+QALASTSG STR  A S  P M LP E++LA
Sbjct: 364 CFDTVSLSQKLSLHRHAKVPILIHVFLWNQALASTSGCSTRSGAISTPPVMALPPEIQLA 423

Query: 438 RQPNENQIQPLPAEVPNDN-EIRNNRERKLERDTAGEVSFRFHDFALKNNWV 488
           RQPNENQI PLP E P+D+  + + R+ +  RDTAG+VSFRFHDFAL NNWV
Sbjct: 424 RQPNENQIMPLPPEAPDDSISLSDGRDLRPGRDTAGDVSFRFHDFALPNNWV 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454367|ref|XP_003597464.1| hypothetical protein MTR_2g098340 [Medicago truncatula] gi|355486512|gb|AES67715.1| hypothetical protein MTR_2g098340 [Medicago truncatula]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/490 (70%), Positives = 403/490 (82%), Gaps = 12/490 (2%)

Query: 1   MDKNQQQQSDSPTRDPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGS 60
           MD+  Q  SDSPTRDPK   VLSI+CL+G+SKADEWT DMLQTGDIVEE  IG      +
Sbjct: 3   MDRTSQTSSDSPTRDPK---VLSIECLRGSSKADEWTVDMLQTGDIVEELRIG------T 53

Query: 61  GSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRR 120
            + S   Y +PFK GRSGVQKIL  ++K KETSI++RVRRG++E AELQACIVP     +
Sbjct: 54  KTKSQIRYNSPFKGGRSGVQKILQEAYKKKETSIMIRVRRGSDELAELQACIVPNDASGK 113

Query: 121 NCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQE 180
             ++LRSI DPNY  GF DRTE +C E+ ASRSSR+V+AL R +LQ+GYVSYPWERR QE
Sbjct: 114 KQFVLRSIDDPNYVVGFLDRTEVECFEIQASRSSRMVNALTRTKLQDGYVSYPWERRMQE 173

Query: 181 VLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTES 240
           +L+VPNSS FLS+LLLPKASD VASRYND+EDTLARANAW+NA QA+GVPIVFMNIQTES
Sbjct: 174 MLTVPNSSNFLSILLLPKASDRVASRYNDLEDTLARANAWINAGQASGVPIVFMNIQTES 233

Query: 241 LLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAI 300
           LLTKISGETAS+TVN+GSLSDLSN+AN SLYGFEDYHG+D+GVVRAVRLWYAPVGGEL+I
Sbjct: 234 LLTKISGETASATVNAGSLSDLSNLANVSLYGFEDYHGIDIGVVRAVRLWYAPVGGELSI 293

Query: 301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSR 360
           EIKLKE DSKLGFAISRTEEGFI+IS+VI + EN+P+TRSGLS LYK A    +LLVVSR
Sbjct: 294 EIKLKEEDSKLGFAISRTEEGFIFISSVI-NQENVPATRSGLSSLYKLATDTCRLLVVSR 352

Query: 361 VSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRL 420
           VSNQKVLPW+VSSTGA+RC+DTVSLSQKLSLHRH +VPILLHVFLWD+++ ++SG S R 
Sbjct: 353 VSNQKVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTRVPILLHVFLWDRSMVNSSGGSNRF 412

Query: 421 RAASLPTM-PLPSEVRLARQPNENQIQPLPAEVPNDNEIRNN-RERKLERDTAGEVSFRF 478
           RA S   + PLPSEV++ R  NE    PLP E  +  +I +   + + ERDTAGE SFRF
Sbjct: 413 RALSPSALQPLPSEVQIGRFSNETHTLPLPPEASDPTDITSEVSQSRFERDTAGESSFRF 472

Query: 479 HDFALKNNWV 488
           HDF+L +NWV
Sbjct: 473 HDFSLSSNWV 482

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544788|ref|XP_002513455.1| conserved hypothetical protein [Ricinus communis] gi|223547363|gb|EEF48858.1| conserved hypothetical protein [Ricinus communis]

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/507 (70%), Positives = 420/507 (82%), Gaps = 23/507 (4%)

Query: 1   MDKNQQQQSDSPTRDPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGS 60
           M  ++    +SP RDPKS+ VLSI+CLKG+SKADEWT DMLQTGDIVEE  IG GS  GS
Sbjct: 1   MTMDRTSPPESPARDPKSFIVLSIECLKGSSKADEWTGDMLQTGDIVEEIRIGSGSSSGS 60

Query: 61  GSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRR 120
           GS S +++KAPFKNG++GVQKILH S KNKETSIL+RVRRG +E AEL ACIVPESG RR
Sbjct: 61  GS-SFQSFKAPFKNGKTGVQKILHTSSKNKETSILIRVRRGRDELAELHACIVPESGSRR 119

Query: 121 NCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQE 180
             Y+LRSI+DPNY  GF DR+EADC EL ASRSSRIV+AL+RA LQ+GYV+YPW +R QE
Sbjct: 120 Q-YILRSISDPNYTVGFVDRSEADCFELQASRSSRIVNALSRATLQDGYVAYPWMKRMQE 178

Query: 181 VLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTES 240
           VLSVPNSS FLS+LLLPK SD VASRYND+EDTLARAN WL ASQA+GVPIVFMNIQTES
Sbjct: 179 VLSVPNSSSFLSLLLLPKVSDRVASRYNDLEDTLARANTWLYASQASGVPIVFMNIQTES 238

Query: 241 LLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAI 300
           LLTKISGE AS+TVN+GSLSDLSN+A+ SLYGFEDYHGVD+GVVRAVRLWYAP+ GE A+
Sbjct: 239 LLTKISGEIASATVNAGSLSDLSNLAHVSLYGFEDYHGVDIGVVRAVRLWYAPLSGEFAV 298

Query: 301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSR 360
           E+K++E D+KLGFAISRTEEGF+Y+S+VID DE+ PS RSGL+ LYKEA SAS+LLVVSR
Sbjct: 299 EMKIRESDTKLGFAISRTEEGFVYVSSVIDSDESTPSMRSGLNNLYKEATSASRLLVVSR 358

Query: 361 VSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRL 420
           V+NQKVLPW+VSSTGA+RC+DTVSLSQKLSLHRHAK+PIL+HVF WD ALAST G+  R 
Sbjct: 359 VANQKVLPWMVSSTGAIRCYDTVSLSQKLSLHRHAKMPILIHVFSWDGALASTGGA--RH 416

Query: 421 RAASLPTMPLPSE------------------VRLARQPNENQIQPLPAEVPNDNE-IRNN 461
           R+ S P MPLP E                  ++LAR PNENQ+ PLP ++PN++  +R+ 
Sbjct: 417 RSISYPVMPLPPEIPLGRQTNENEVLHSPPGIQLARHPNENQVVPLPPDIPNESRVVRDE 476

Query: 462 RERKLERDTAGEVSFRFHDFALKNNWV 488
            +  LERDTAGE SFRF DF++ NNWV
Sbjct: 477 GQIMLERDTAGEASFRFRDFSIPNNWV 503

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541876|ref|XP_003539398.1| PREDICTED: uncharacterized protein LOC100815203 [Glycine max]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/495 (69%), Positives = 405/495 (81%), Gaps = 17/495 (3%)

Query: 1   MDKNQQQQSDSPTR-DPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLG 59
           MD+  Q  SDSPTR DPK   VLSI+CLKG+SKA EWT DMLQTGDIVEE  IG      
Sbjct: 3   MDRLSQSSSDSPTRGDPK---VLSIECLKGSSKAHEWTGDMLQTGDIVEELRIG------ 53

Query: 60  SGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGR 119
           +   +  ++++PFKNG+SGV +IL  S+K K+TSILV VRRG  EFAELQACIVP     
Sbjct: 54  ASPNALISFRSPFKNGKSGVNRILQDSYKKKDTSILVLVRRGPHEFAELQACIVPNDSSG 113

Query: 120 RNCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQ 179
           +  Y+LRSITDPNY   F DRTE +C +L ASR++R+V+AL R RLQ+GYVSYPWERR Q
Sbjct: 114 KKHYVLRSITDPNYVVAFLDRTETECFQLQASRTTRMVNALTRTRLQDGYVSYPWERRMQ 173

Query: 180 EVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTE 239
           E+LSVPNSS FLS+LLLPK SD +A+RYNDVEDTLARAN WLNA+QA+GVPIVFMN+QTE
Sbjct: 174 ELLSVPNSSNFLSILLLPKVSDRIAARYNDVEDTLARANTWLNAAQASGVPIVFMNVQTE 233

Query: 240 SLLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELA 299
           SLLTKISGETASSTVN+GSLSDLSN+ANASLYGFEDYHGVD+GVVRAVRLWYAP+GGE++
Sbjct: 234 SLLTKISGETASSTVNAGSLSDLSNLANASLYGFEDYHGVDIGVVRAVRLWYAPIGGEIS 293

Query: 300 IEIKLKEGDSKLGFAISRTEEGFIYISTVIDDD-ENIPSTRSGLSILYKEAVSASKLLVV 358
           IEIKLKE D+KLGFAISRTEEGFI+I TVI+D+ EN+P+TRSGLS LYK A   SKLLVV
Sbjct: 294 IEIKLKEDDAKLGFAISRTEEGFIFIQTVIEDNQENVPATRSGLSNLYKAAKDTSKLLVV 353

Query: 359 SRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSST 418
           SR+SNQ+VLPW+VSSTGA+RC+DTVSLSQKLSLHRH KVPILLHVFLWD+ LAS S  ST
Sbjct: 354 SRLSNQRVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTKVPILLHVFLWDRTLAS-SLEST 412

Query: 419 RLRAASLPTMPLP--SEVRLARQPNENQIQPLPAEVPNDN---EIRNNRERKLERDTAGE 473
           RL + S   +PLP   EV+LA  PNENQIQPLP E  +         ++  +LERDTAG+
Sbjct: 413 RLSSLSPSVLPLPLSQEVQLAPHPNENQIQPLPHEGSDAGGGVSSVGSQPMQLERDTAGD 472

Query: 474 VSFRFHDFALKNNWV 488
           +SFRFH+F++ N W+
Sbjct: 473 LSFRFHNFSVSNCWL 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862094|emb|CAN80882.1| hypothetical protein VITISV_018651 [Vitis vinifera]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/503 (68%), Positives = 400/503 (79%), Gaps = 45/503 (8%)

Query: 20  TVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGV 79
            VLSI+CLKG+SK DEWT DMLQTGDIVEE  IG    +          +APFKNG+ GV
Sbjct: 14  VVLSIECLKGSSKGDEWTGDMLQTGDIVEEIKIGNSVSV----------RAPFKNGKVGV 63

Query: 80  QKILHGSFKNKETSILVRVRRGAEEFAELQACIVP-ESGGRRNCYMLRSITDPNYAAGFT 138
           Q++LH SFK+++TSI VRVRRG +E AELQACIVP ES G++  YMLR+I DPNYA GF 
Sbjct: 64  QRLLHSSFKSRDTSIQVRVRRGDDELAELQACIVPNESAGKKQ-YMLRAIDDPNYAVGFC 122

Query: 139 DRTEADCLELL------------------------------ASRSSRIVSALARARLQEG 168
           DRTE++C  L                               ASR+SR+VSAL R +LQ+G
Sbjct: 123 DRTESECFALPKHLAMELYAWTLCIWPSIRVVHFACYLHHNASRNSRMVSALTRTQLQDG 182

Query: 169 YVSYPWERRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATG 228
           YV+YPW R+ QE LSVPNSSCFLS+L LPK+SD  ASRYND+EDTLARANAWL ASQ+ G
Sbjct: 183 YVAYPWGRKMQEFLSVPNSSCFLSILXLPKSSDRAASRYNDLEDTLARANAWLTASQSAG 242

Query: 229 VPIVFMNIQTESLLTKISGETASSTVN-SGSLSDLSNVANASLYGFEDYHGVDLGVVRAV 287
           VP+VFMNI TESLLTKISGETASSTVN +GSLSDL+N+ANASLYGFEDYHGVD+GVVRAV
Sbjct: 243 VPVVFMNIHTESLLTKISGETASSTVNIAGSLSDLANLANASLYGFEDYHGVDIGVVRAV 302

Query: 288 RLWYAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYK 347
           RLWYAP+G E  +EIK+K+ D+KLGFAISRTEEGFIYIS+VID D+N PSTRSGLS LYK
Sbjct: 303 RLWYAPLGCEFPMEIKIKDSDTKLGFAISRTEEGFIYISSVIDGDDNAPSTRSGLSNLYK 362

Query: 348 EAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWD 407
           EA++ASKLLVVSRVSNQKVLPW+VSSTGA+RCFDTVSLSQKLSLHRHAKVPIL+HVFLW+
Sbjct: 363 EAMAASKLLVVSRVSNQKVLPWMVSSTGAIRCFDTVSLSQKLSLHRHAKVPILIHVFLWN 422

Query: 408 QALASTSGSSTRLRAASL-PTMPLPSEVRLARQPNENQIQPLPAEVPNDN-EIRNNRERK 465
           QALASTSG STR  A S  P M LP E++LARQPNENQI PLP E P+D+  + + R+ +
Sbjct: 423 QALASTSGCSTRSGAISTPPVMALPPEIQLARQPNENQIMPLPPEAPDDSISLSDGRDLR 482

Query: 466 LERDTAGEVSFRFHDFALKNNWV 488
             RDTAG+VSFRFHDFAL NNWV
Sbjct: 483 PGRDTAGDVSFRFHDFALPNNWV 505

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638682|gb|ACU19646.1| unknown [Glycine max]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/495 (69%), Positives = 404/495 (81%), Gaps = 17/495 (3%)

Query: 1   MDKNQQQQSDSPTR-DPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLG 59
           MD+  Q  SDSPTR DPK   VLSI+CLKG+SKA EWT DMLQTG IVEE  IG      
Sbjct: 3   MDRLSQSSSDSPTRGDPK---VLSIECLKGSSKAHEWTGDMLQTGGIVEELRIG------ 53

Query: 60  SGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGR 119
           +   +  ++++PFKNG+SGV +IL  S+K K+TSILV VRRG  EFAELQACIVP     
Sbjct: 54  ASPNALISFRSPFKNGKSGVNRILQDSYKKKDTSILVLVRRGPHEFAELQACIVPNDSSG 113

Query: 120 RNCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQ 179
           +  Y+LRSITDPNY   F DRTE +C +L ASR++R+V+AL R RLQ+GYVSYPWERR Q
Sbjct: 114 KKHYVLRSITDPNYVVAFLDRTETECFQLQASRTTRMVNALTRTRLQDGYVSYPWERRMQ 173

Query: 180 EVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTE 239
           E+LSVPNSS FLS+LLLPK SD +A+RY+DVEDTLARAN WLNA+QA+GVPIVFMN+QTE
Sbjct: 174 ELLSVPNSSNFLSILLLPKVSDRIAARYSDVEDTLARANTWLNAAQASGVPIVFMNVQTE 233

Query: 240 SLLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELA 299
           SLLTKISGETASSTVN+GSLSDLSN+ANASLYGFEDYHGVD+GVVRAVRLWYAP+GGE++
Sbjct: 234 SLLTKISGETASSTVNAGSLSDLSNLANASLYGFEDYHGVDIGVVRAVRLWYAPIGGEIS 293

Query: 300 IEIKLKEGDSKLGFAISRTEEGFIYISTVIDDD-ENIPSTRSGLSILYKEAVSASKLLVV 358
           IEIKLKE D+KLGFAISRTEEGFI+I TVI+D+ EN+P+TRSGLS LYK A   SKLLVV
Sbjct: 294 IEIKLKEDDAKLGFAISRTEEGFIFIQTVIEDNQENVPATRSGLSNLYKAAKDTSKLLVV 353

Query: 359 SRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSST 418
           SR+SNQ+VLPW+VSSTGA+RC+DTVSLSQKLSLHRH KVPI LHVFLWD+ LAS S  ST
Sbjct: 354 SRLSNQRVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTKVPIFLHVFLWDRTLAS-SLEST 412

Query: 419 RLRAASLPTMPLP--SEVRLARQPNENQIQPLPAEVPNDNEIRNN---RERKLERDTAGE 473
           RL + S   +PLP   EV+LA  PNENQIQPLP E  +     ++   +  +LERDTAG+
Sbjct: 413 RLSSLSPSVLPLPLSQEVQLAPHPNENQIQPLPHEGSDAGGGVSSVGFQPMQLERDTAGD 472

Query: 474 VSFRFHDFALKNNWV 488
           +SFRFH+F++ N W+
Sbjct: 473 LSFRFHNFSVSNRWL 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538927|ref|XP_003537952.1| PREDICTED: uncharacterized protein LOC100788800 [Glycine max]

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/477 (72%), Positives = 400/477 (83%), Gaps = 15/477 (3%)

Query: 15  DPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKN 74
           DPK   VLSI+CLKG+SKADEWT DMLQTGDIVEE  IG      +   +   +++PFKN
Sbjct: 19  DPK---VLSIECLKGSSKADEWTGDMLQTGDIVEELRIG------NSPNALIRFQSPFKN 69

Query: 75  GRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRRNCYMLRSITDPNYA 134
           G+SGV +IL  S+K KETSILVRVRRG  EFAELQACIVP     +  Y+LRSITDPNY 
Sbjct: 70  GKSGVSRILQDSYKKKETSILVRVRRGPHEFAELQACIVPNDSSGKKHYVLRSITDPNYV 129

Query: 135 AGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQEVLSVPNSSCFLSML 194
            GF DRTE  C +L ASR+SR+V+AL R RLQ+GYVSYPWERR QE+LSVPNSS FLS+L
Sbjct: 130 VGFLDRTETKCFQLQASRTSRMVNALTRTRLQDGYVSYPWERRMQELLSVPNSSNFLSIL 189

Query: 195 LLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTKISGETASSTV 254
           LLPK SD +ASRYNDVEDTLARAN WLNA+QA+GVPIVFMN+QTESLLTKISGETASSTV
Sbjct: 190 LLPKVSDRIASRYNDVEDTLARANTWLNATQASGVPIVFMNVQTESLLTKISGETASSTV 249

Query: 255 NSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFA 314
           N+GSLSD+SN+ANASLYGFEDYHGVD+GVVRAVRLWYAP+GGE++IEIKLKE D+KLGFA
Sbjct: 250 NAGSLSDVSNLANASLYGFEDYHGVDIGVVRAVRLWYAPIGGEISIEIKLKEDDTKLGFA 309

Query: 315 ISRTEEGFIYISTVIDDD-ENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSS 373
           ISRTEEGFI+I TVI+DD EN+P+TRSGLS LYK A  ASKLLVVS +SNQ+VLPW+VSS
Sbjct: 310 ISRTEEGFIFIQTVIEDDQENVPATRSGLSNLYKAAKDASKLLVVSNLSNQRVLPWMVSS 369

Query: 374 TGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRL--RAASLPTMPLP 431
           TGA+RC+DTVSLSQKLSLHRH KVPILLHVFLWD+ LAS S  STRL   + S+  +PLP
Sbjct: 370 TGAIRCYDTVSLSQKLSLHRHTKVPILLHVFLWDRKLAS-SVESTRLSNLSPSVLPLPLP 428

Query: 432 SEVRLARQPNENQIQPLPAEVPNDNEIRNNRERKLERDTAGEVSFRFHDFALKNNWV 488
            EV+LAR PNENQIQPLP E  +  +   ++  +LERDTAG++SFRF++F++ NNWV
Sbjct: 429 PEVQLARHPNENQIQPLPHEGSDAGD--GSQPMQLERDTAGDLSFRFNNFSVSNNWV 483

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550349|ref|XP_003543550.1| PREDICTED: uncharacterized protein LOC100806339 [Glycine max]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/489 (70%), Positives = 401/489 (82%), Gaps = 14/489 (2%)

Query: 1   MDKNQQQQSDSPTRDPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGS 60
           MD++ Q  SDSPTR+ K   VLSI+CLKG+SK DEWT DMLQTGDIVEE  IG      S
Sbjct: 3   MDRSSQSSSDSPTREAK---VLSIECLKGSSKGDEWTGDMLQTGDIVEELRIG------S 53

Query: 61  GSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRR 120
            + S   Y+ PFK G+SGVQKIL  +FK KETSI+VRVRRG+EE AELQACIVP     +
Sbjct: 54  SAKSQIRYQWPFKGGKSGVQKILQEAFKKKETSIVVRVRRGSEELAELQACIVPNEFTAK 113

Query: 121 NCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQE 180
              +LRSI+DPNY  GF DRTEA+C E+ ASR++R+V+AL R +LQ+GYVSY WERR QE
Sbjct: 114 KNLVLRSISDPNYVVGFVDRTEAECFEIQASRNTRMVNALTRTKLQDGYVSYSWERRMQE 173

Query: 181 VLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTES 240
           +LSVPNSS FLS+L LPKASD VASRYND+EDTLARANAWLNA QA+GVPIVFMNIQTES
Sbjct: 174 MLSVPNSSNFLSILFLPKASDRVASRYNDLEDTLARANAWLNAGQASGVPIVFMNIQTES 233

Query: 241 LLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAI 300
           LLTKISGETASSTVN+GSLSDL+N+ANASLYGFEDYHG+D+GVVRAVRLWYAPV GE +I
Sbjct: 234 LLTKISGETASSTVNAGSLSDLANLANASLYGFEDYHGIDIGVVRAVRLWYAPVAGEFSI 293

Query: 301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSR 360
           EIKLKE D+KLGFAISRTEEGFI+IS+VI + EN+P+TRSGLS LYK A    ++LVVSR
Sbjct: 294 EIKLKEEDAKLGFAISRTEEGFIFISSVI-NQENVPATRSGLSNLYKLATDTCRMLVVSR 352

Query: 361 VSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRL 420
           VSNQKVLPW+VSSTGA+RC+DTVSLSQKLSLHRH +VPILLHVFLWD+AL S+SG S+R 
Sbjct: 353 VSNQKVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTRVPILLHVFLWDRALVSSSGGSSRF 412

Query: 421 RAASLPTMP-LPSEVRLARQPNENQIQPLPAEVPNDNEIRNNRERKLERDTAGEVSFRFH 479
           RA S   +P   SE+ +AR P+E  + PLP      +EI ++R   LERDTAGE SFRFH
Sbjct: 413 RALSSSVLPSHASEIEVARLPDETHVLPLPPPPSEPSEISHSR---LERDTAGEFSFRFH 469

Query: 480 DFALKNNWV 488
           DFAL +NWV
Sbjct: 470 DFALSSNWV 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557487|ref|XP_003547047.1| PREDICTED: uncharacterized protein LOC100798931 [Glycine max]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/490 (70%), Positives = 399/490 (81%), Gaps = 12/490 (2%)

Query: 1   MDKNQQQQSDSPTRDPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGS 60
           MD++ Q  SDSPTR+PK   VLSI+CLKG+SK DEWT DMLQTGDIVEE        LGS
Sbjct: 3   MDRSSQSSSDSPTREPK---VLSIECLKGSSKGDEWTGDMLQTGDIVEELR------LGS 53

Query: 61  GSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRR 120
            + S   Y+ PFK G+SGVQKIL  +FK KETSI VRVRRG+EE AELQACIVP     +
Sbjct: 54  TANSQIRYQWPFKGGKSGVQKILQDAFKKKETSIAVRVRRGSEELAELQACIVPNEFTAK 113

Query: 121 NCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQE 180
              +LRSI+DPNY  GF DRTEA+C EL ASR++R+V+AL R +LQ+GYVSY WERR QE
Sbjct: 114 KNLVLRSISDPNYVVGFVDRTEAECFELQASRNTRMVNALTRTKLQDGYVSYSWERRMQE 173

Query: 181 VLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTES 240
           +L VPNSS FLS+L LPKASD VASRYND+EDTLARANAWLNA QA+GVPIVFMNIQTES
Sbjct: 174 MLPVPNSSNFLSILFLPKASDRVASRYNDLEDTLARANAWLNAGQASGVPIVFMNIQTES 233

Query: 241 LLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAI 300
           LLTKISGETASSTVN+GSLSDLSN+ANASLYGFEDYHG+D+GVVRAVRLWYAPV GE +I
Sbjct: 234 LLTKISGETASSTVNAGSLSDLSNLANASLYGFEDYHGIDIGVVRAVRLWYAPVAGEFSI 293

Query: 301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSR 360
           EIKLKE D+KLGFAISRTEEGFI+IS+VI + EN+P+ RSGLS LYK A    ++LVVSR
Sbjct: 294 EIKLKEEDAKLGFAISRTEEGFIFISSVI-NQENVPAARSGLSNLYKLATDTCRMLVVSR 352

Query: 361 VSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRL 420
           VSNQKVLPW+VSSTGA+RC+DTVSLSQKLSLHRH +VPILLHVFLWD+ L S+SG S+R 
Sbjct: 353 VSNQKVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTRVPILLHVFLWDRNLVSSSGGSSRF 412

Query: 421 RAASLPTMP-LPSEVRLARQPNENQIQPLPAEVPNDNEIRNN-RERKLERDTAGEVSFRF 478
           RA S   +P   SEV+LAR P+E  + PLP      ++I +     +LERDTAGE+SFRF
Sbjct: 413 RALSSSVLPSHASEVQLARLPDETHVLPLPPPPSEPSDITSEISHSRLERDTAGELSFRF 472

Query: 479 HDFALKNNWV 488
           HDFAL +NWV
Sbjct: 473 HDFALSSNWV 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448758|ref|XP_004142132.1| PREDICTED: uncharacterized protein LOC101208319 [Cucumis sativus] gi|449520803|ref|XP_004167422.1| PREDICTED: uncharacterized protein LOC101231623 [Cucumis sativus]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/496 (68%), Positives = 403/496 (81%), Gaps = 25/496 (5%)

Query: 1   MDKNQQQQSDSPTRDPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGS 60
           MD+ Q       TR      VLSI+C+KG+S+ADEWT DMLQTGDIVEE TIG       
Sbjct: 3   MDRIQPTSESPSTR----LMVLSIECIKGSSRADEWTGDMLQTGDIVEELTIG------- 51

Query: 61  GSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGRR 120
              S    ++PFK+GRSG+QKILH SFK+K+TSILVRVRRG ++F+ELQACIVP     R
Sbjct: 52  ---SSLCVRSPFKHGRSGIQKILHNSFKDKQTSILVRVRRGRDDFSELQACIVPNDSAGR 108

Query: 121 NCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQE 180
             Y+LRSI+DPNY  GF DRTE++C +L ASRS R+VSAL R RLQ+GYV+Y WERR  E
Sbjct: 109 KQYVLRSISDPNYVVGFMDRTESECFDLQASRSDRMVSALERTRLQDGYVTYQWERRMHE 168

Query: 181 VLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQTES 240
            LSVP SS FLS+LLLPKA++ VA+RYND+EDTLARANAWLN++QATGVP+VFMNIQTES
Sbjct: 169 SLSVPYSSSFLSILLLPKAANEVATRYNDLEDTLARANAWLNSAQATGVPVVFMNIQTES 228

Query: 241 LLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAI 300
           LLTKISG+TASSTV++GSLSDLSN+ANASLYGFEDYHGVD+GVVR+VRLWYAP+GGEL I
Sbjct: 229 LLTKISGDTASSTVSAGSLSDLSNLANASLYGFEDYHGVDIGVVRSVRLWYAPLGGELPI 288

Query: 301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSR 360
           EIKLKEGDSKLGF+I RTEEGFIY+S V D+D+N PS+RSGL+ LYKEA +ASKLL++SR
Sbjct: 289 EIKLKEGDSKLGFSIGRTEEGFIYVSAV-DEDDNAPSSRSGLNHLYKEAENASKLLIISR 347

Query: 361 VSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSSTRL 420
           VSNQKVLPWIVSSTGA+RCFDTVSLSQKLSLHRHAKVPI LHVFLWD+ L ++  S+T +
Sbjct: 348 VSNQKVLPWIVSSTGAIRCFDTVSLSQKLSLHRHAKVPIFLHVFLWDRELLASLISATPI 407

Query: 421 R---AASLPTMP----LPSEVRLARQPNENQIQPLPAEVPNDNEIRNNRER---KLERDT 470
           R    AS P  P    LP E +LARQPN+NQIQPLPA+  +++   +  E    + ERDT
Sbjct: 408 RQRSTASQPAAPARLALPPEFQLARQPNDNQIQPLPADAFSESLSVSTDESSSIRTERDT 467

Query: 471 AGEVSFRFHDFALKNN 486
           AGE+SFRFH+F+L +N
Sbjct: 468 AGELSFRFHEFSLSSN 483

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
TAIR|locus:2118081	483	AT4G12070 [Arabidopsis thalian	0.952	0.962	0.614	8.8e-150

TAIR|locus:2118081 AT4G12070 [Arabidopsis thaliana (taxid:3702)]

 Score = 1462 (519.7 bits), Expect = 8.8e-150, P = 8.8e-150
 Identities = 307/500 (61%), Positives = 371/500 (74%)

Query:     1 MDKNQQQQSDSPTRDPKSYTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIXXXXXXXX 60
             MD+  Q +S  PT  P +  VLSIDCLKG+SK++EW+ DMLQTGDIVEE  I        
Sbjct:     1 MDRTHQPES--PTARPGNTVVLSIDCLKGSSKSEEWSGDMLQTGDIVEEIRIGSGPGSAI 58

Query:    61 XXXXCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVP-ESGGR 119
                    +KAPFK G++ +QK+LH SF+NKETSI+VRVRRG+++F++L ACIVP ES G+
Sbjct:    59 -------FKAPFKGGKAWLQKVLHNSFRNKETSIVVRVRRGSDDFSDLSACIVPNESAGK 111

Query:   120 RNCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALARARLQEGYVSYPWERRKQ 179
             R  YMLRSI DPNY  GF+DRTE+DCL L  SR SR+V AL +A+LQ+GYVSYPWERR Q
Sbjct:   112 RQ-YMLRSIDDPNYTVGFSDRTESDCLGLQESRGSRMVEALVKAKLQDGYVSYPWERRMQ 170

Query:   180 EVLSVPNSSCFLSMLLLPKASDV--VASRYNDVEDTLARANAWLNASQATGVPIVFMNIQ 237
             E L +  SS FLS+L LPKAS      SRYND+EDTLARANAWL+ SQA GVPIVFMNIQ
Sbjct:   171 EALPISGSSNFLSILFLPKASAYGRTGSRYNDLEDTLARANAWLSCSQANGVPIVFMNIQ 230

Query:   238 TESLLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHGVDLGVVRAVRLWYAPVGGE 297
             TESLLTKISGETAS+TVN+ SLSDLSN+AN SLYGFEDYHGVD+GVVRAVRLW+AP+G E
Sbjct:   231 TESLLTKISGETASATVNTTSLSDLSNLANTSLYGFEDYHGVDIGVVRAVRLWFAPLGVE 290

Query:   298 LAIEIKLKEGDSKLGFAISRTEEGFIYISTVID-DDENIPSTRSGLSILYKEAVSASKLL 356
               +EIKLK+ D+KLGF+ISRTEEGFIY+S+V D +DE+ P+ RSGLS LY+EA  AS+ L
Sbjct:   291 FPLEIKLKDDDTKLGFSISRTEEGFIYVSSVTDHEDESAPAARSGLSSLYREAAKASRRL 350

Query:   357 VVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQALA----- 411
             VVSRV NQKVLPW+VSSTGA+RC+DTVSLSQKLSLHRHAKV I LHVFLWD +       
Sbjct:   351 VVSRVGNQKVLPWMVSSTGAIRCYDTVSLSQKLSLHRHAKVHIGLHVFLWDSSATADFSS 410

Query:   412 ---STSGSSTRLRA-ASLPTMPLP--SEVRLARQPNENQIQPLPAEVPNDNEIRNNRERK 465
                S+SG +  L +  +L +   P   EV   RQ  + Q+ PLP     D ++      +
Sbjct:   411 PPRSSSGGTHLLFSNETLDSTEFPRYGEVLPPRQVGDRQVMPLP-----DEDVF-----R 460

Query:   466 LERDTAGEVSFRFHDFALKN 485
              ER+ AG  SF+F +    N
Sbjct:   461 FERENAGNASFKFQEIPFTN 480


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      488       476   0.00078  119 3  11 22  0.42    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  273 KB (2144 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  39.28u 0.12s 39.40t   Elapsed:  00:00:02
  Total cpu time:  39.28u 0.12s 39.40t   Elapsed:  00:00:02
  Start:  Fri May 10 02:15:42 2013   End:  Fri May 10 02:15:44 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	89.85

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=89.85  E-value=0.43  Score=37.44  Aligned_cols=40  Identities=25%  Similarity=0.625  Sum_probs=33.1

Q ss_pred             eEeeecCCCcceeeeeeecccc---eEEEEEeecCCCCCccchhhHH
Q 011319          300 IEIKLKEGDSKLGFAISRTEEG---FIYISTVIDDDENIPSTRSGLS  343 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTEEG---FiyVsSV~~~~~g~~a~RsGL~  343 (488)
                      |+|..+ ++..|||.+..-.+.   .+||++|..   +.||.++||+
T Consensus         2 v~l~k~-~~~~lG~~l~~~~~~~~~~~~V~~v~~---~~~a~~~gl~   44 (81)
T PF00595_consen    2 VTLEKS-GNGPLGFTLRGGSDNDEKGVFVSSVVP---GSPAERAGLK   44 (81)
T ss_dssp             EEEEES-TTSBSSEEEEEESTSSSEEEEEEEECT---TSHHHHHTSS
T ss_pred             EEEEeC-CCCCcCEEEEecCCCCcCCEEEEEEeC---CChHHhcccc
Confidence            455555 789999999987774   999999996   6999999963

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	488
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 3e-10
 Identities = 59/385 (15%), Positives = 99/385 (25%), Gaps = 119/385 (30%)

Query: 146 LELLASRSSRIVSALARARLQEGYVSYPWERRKQEVLSVPNSSCFLSMLLLPKASDVVAS 205
              L S+   +V       L+  Y  +     K E                 +   ++  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTE----------------QRQPSMMTR 110

Query: 206 RYNDVEDTLARANAWLNASQATGVPIVFMNIQTESLLTKISGETASSTVNSGSLSDLSNV 265
            Y +  D L   N                N+       K+    A        L +L   
Sbjct: 111 MYIEQRDRLYNDN----------QVFAKYNVSRLQPYLKL--RQA--------LLELRPA 150

Query: 266 ANASLYGFEDYHGVDLGVVRAVRLWYAPVGGELAIEIKLKEG-DSKLGFAI-------SR 317
            N  + G        LG  +            +A+++ L      K+ F I         
Sbjct: 151 KNVLIDG-------VLGSGKTW----------VALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 318 TEEGFIYI------------STVIDDDENIP----STRSGLSILYKEAVSASKLLVVSRV 361
           + E  + +            ++  D   NI     S ++ L  L K     + LLV+  V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 362 SNQKVLPWIVSSTGAVRCFD----TVSLSQKLSLHRHAKVPILLHVFLWDQALASTSGSS 417
            N K              F+     +  ++   +          H+ L   ++  T    
Sbjct: 254 QNAKA----------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 418 TRLRAASLPTMP--LPSEVRLARQPNENQIQPLP----AEVPNDNEIRNNRERKLERD-- 469
             L    L   P  LP EV            P      AE   D     +  + +  D  
Sbjct: 304 KSLLLKYLDCRPQDLPREVL--------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 470 -TAGEVSF----------RFHDFAL 483
            T  E S            F   ++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSV 380

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 68/476 (14%), Positives = 144/476 (30%), Gaps = 112/476 (23%)

Query: 79  VQKILHGSFKNKETSILVRVRRGAEEFAELQACIV--PESGGRRNCYMLRSITDPNYAAG 136
           VQ +       +E   ++  +        L   ++   E   ++    +  +   NY   
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK---FVEEVLRINY--K 92

Query: 137 F-TDRTEADCLELLASRSSRIVSALARARLQEG---YVSYPWERRK-----QEVLSV--P 185
           F     + +  +   S  +R+     R RL      +  Y   R +     ++ L    P
Sbjct: 93  FLMSPIKTEQRQ--PSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 186 NSSCFL--------SMLLLPKASDVVASRYNDVEDTLARANAWLNASQATGVPIVFMNIQ 237
             +  +        + +    A DV  S    V+  +     WLN         V   +Q
Sbjct: 150 AKNVLIDGVLGSGKTWV----ALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 238 TESLLTKISGETASSTVNSGSLSDLSNVANASLYGF--EDYHGVDLGVVRAV---RLWYA 292
              LL +I     S + +S ++    +   A L        +   L V+  V   + W A
Sbjct: 204 K--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 293 ------------------PVGGELAIEIKLKEGDSKLGFAISRTEEGFI-YISTVIDDDE 333
                              +       I L      +       +   + Y+     D  
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQD-- 317

Query: 334 NIPSTRSGLSILYKEAVSASKLLV----------VSRVSN-QKVLPWIVSST--GAVRCF 380
            +P          +E ++ +   +          ++   N + V    +++    ++   
Sbjct: 318 -LP----------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 381 DTVSLSQ---KLSLHR-HAKVPILLHVFLWDQALASTSGSS-TRLRAASLPTMPLPSEVR 435
           +     +   +LS+    A +P +L   +W   + S       +L   SL          
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---------- 416

Query: 436 LARQPNENQIQPLPA-----EVPNDNEIRNNRERKLERDTAGEVSFRFHDFALKNN 486
           + +QP E+ I  +P+     +V  +NE   +R   ++     + +F   D      
Sbjct: 417 VEKQPKESTIS-IPSIYLELKVKLENEYALHR-SIVDHYNIPK-TFDSDDLIPPYL 469

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 60/459 (13%), Positives = 130/459 (28%), Gaps = 144/459 (31%)

Query: 11  SPTRDPKSYTVLSIDCLKGTSKADEWTADMLQT--GDIVEEFTIGGGSGLGSGSGSCRTY 68
           S      +  +      K      ++  ++L+     ++                     
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK--------------TEQ 102

Query: 69  KAPFKNGRSGVQKILHGSFKNKETSILVR--VRRGAEEFAELQACIV---PESG----GR 119
           + P    R  +++       N +  +  +  V R  + + +L+  ++   P       G 
Sbjct: 103 RQPSMMTRMYIEQ--RDRLYN-DNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDG- 157

Query: 120 RNCYM------------LRS--ITDPNYAAGF-----TDRTEADCLELLASRSSRIVSAL 160
               +              S  +        F        +    LE+L     +I    
Sbjct: 158 ----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 161 ARARLQEGYVSYP-----WERRKQEVLSV---PNSSCFLSMLLLPKASDV---------- 202
                 +   +        +   + +L      N      +L+L    +V          
Sbjct: 214 TS--RSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVL---LNVQNAKAWNAFN 263

Query: 203 ------VASRYNDVEDTLARANAWLNASQATGVPIVFMNI-----QTESLLTKISGETAS 251
                 + +R+  V D L       +A+  T + +   ++     + +SLL K       
Sbjct: 264 LSCKILLTTRFKQVTDFL-------SAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--- 313

Query: 252 STVNSGSLSDLSNVANA------SLYGFEDYHGVDLGVVRAVRLW--YAPVGGE---LAI 300
                    DL            S+       G+          W  +  V  +     I
Sbjct: 314 ------RPQDLPREVLTTNPRRLSIIAESIRDGLAT--------WDNWKHVNCDKLTTII 359

Query: 301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSR 360
           E  L      L  A  R  + F  +S V     +IP+    LS+++ + + +  ++VV++
Sbjct: 360 ESSLNV----LEPAEYR--KMFDRLS-VFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNK 410

Query: 361 VSNQKVLP-WIVSSTGAVRCFD-----TVSLSQKLSLHR 393
           +    ++      ST  +          V L  + +LHR
Sbjct: 411 LHKYSLVEKQPKEST--ISIPSIYLELKVKLENEYALHR 447

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	93.99
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	93.16
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	92.55
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	91.6
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	91.5
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	91.4
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	90.79
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	90.74
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	90.08
2opg_A	98	Multiple PDZ domain protein; structural protein, s	89.89
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	89.84
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	89.78
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	89.71
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	89.34
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	89.33
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	89.3
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	89.27
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	89.27
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	89.21
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	89.05
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	88.63
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	88.6
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	88.54
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	88.35
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	88.08
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	88.01
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	87.93
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	87.92
2awx_A	105	Synapse associated protein 97; membrane protein, s	87.73
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	87.68
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	87.55
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	87.3
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	87.23
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	87.1
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	87.09
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	87.05
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	86.82
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	86.71
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	86.46
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	86.25
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	86.14
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	85.9
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	85.75
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	85.52
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	85.47
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	85.42
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	85.38
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	85.29
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	85.09
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	85.08
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	84.93
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	84.71
2fne_A	117	Multiple PDZ domain protein; structural protein, s	84.62
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	84.5
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	84.5
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	84.5
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	84.36
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	84.17
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	84.09
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	84.04
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	83.91
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	83.74
2ego_A	96	General receptor for phosphoinositides 1- associat	83.68
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	83.58
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	83.38
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	83.18
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	83.07
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	82.96
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	82.93
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	82.81
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	82.76
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	82.61
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	82.34
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	82.05
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	81.93
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	81.76
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	81.65
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	81.25
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	81.21
2d90_A	102	PDZ domain containing protein 1; structural genomi	81.12
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	81.11
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	81.1
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	80.95
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	80.94
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	80.59
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	80.51
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	80.31

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=93.99  E-value=0.13  Score=40.27  Aligned_cols=42  Identities=33%  Similarity=0.418  Sum_probs=32.7

Q ss_pred             eeeeEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhh
Q 011319          297 ELAIEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       297 E~~lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG  341 (488)
                      +..+++.++.+...|||.|...++  +-++|.+|..   ++||.++|
T Consensus         4 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~---~spA~~aG   47 (97)
T 1n7e_A            4 AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTK---GGLAERTG   47 (97)
T ss_dssp             CCEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECT---TSHHHHHT
T ss_pred             ceEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECC---CCHHHHCC
Confidence            334555566667789999987765  5789999996   79999999

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=93.16  E-value=0.081  Score=40.54  Aligned_cols=57  Identities=14%  Similarity=0.317  Sum_probs=43.1

Q ss_pred             eeeeEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          297 ELAIEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       297 E~~lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      |+++++..+. ...|||.|....+  .-++|.+|..   ++||.++||+        .|-.++  .+.|++|-
T Consensus         1 ~~~~~v~~~~-~~~lG~~l~~~~~~~~g~~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v~   59 (87)
T 2pa1_A            1 SMALTVDVAG-PAPWGFRITGGRDFHTPIMVTKVAE---RGKAKDADLR--------PGDIIV--AINGESAE   59 (87)
T ss_dssp             CEEEEEEECS-SSCCSEEEEEEGGGTEEEEEEEECS---SSHHHHTTCC--------TTCEEE--EETTEEST
T ss_pred             CcEEEEEECC-CCccCEEEecccCCCCCEEEEEECC---CChHHHcCCC--------CCCEEE--EECCEECC
Confidence            6788888864 6789999986554  4689999996   7999999984        565544  67777654

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=92.55  E-value=0.49  Score=39.30  Aligned_cols=55  Identities=25%  Similarity=0.523  Sum_probs=38.4

Q ss_pred             eEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          300 IEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      +++.++.+...|||.|.-..+  ..++|.+|..   +.||+++| |+        .|-.++  .|.|++|-
T Consensus        20 ~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~---~spA~~aG~L~--------~GD~Il--~vng~~v~   77 (129)
T 2kpk_A           20 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVL---DGPAALDGKME--------TGDVIV--SVNDTCVL   77 (129)
T ss_dssp             EEEEEEECSSCCSEEEEEEEETTEEEEEEEECT---TSHHHHHSSCC--------TTCEEE--EETTEECT
T ss_pred             EEEEEEECCCcccEEEeCccCCCCCEEEEEECC---CChHHHcCCCC--------CCCEEE--EECCEECC
Confidence            445555567789999986433  3599999996   79999999 74        455443  57777653

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=91.60  E-value=0.12  Score=41.09  Aligned_cols=58  Identities=19%  Similarity=0.402  Sum_probs=44.0

Q ss_pred             eccccceeeeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319          291 YAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       291 y~P~~~E~~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      |.|......+.|+.......|||.+.   .|  +|++|..   ++||.|+||+        .|-.++  .+.|++|
T Consensus         6 ~~~~~~~~~~~i~~~~~~~~lG~~~~---~G--~V~~V~~---~spA~~aGL~--------~GD~Il--~Ing~~v   63 (90)
T 1y7n_A            6 LETMGNVTTVLIRRPDLRYQLGFSVQ---NG--IICSLMR---GGIAERGGVR--------VGHRII--EINGQSV   63 (90)
T ss_dssp             -CCCSSCEEEEEEESSTTSCCCEEEE---TT--EEEEECT---TSHHHHHTCC--------SSCEEE--EETTEEC
T ss_pred             cCccCCcceEEEEeCCCccccCeEec---CC--EEEEECC---CCHHHHcCCC--------CCCEEE--EECCEEC
Confidence            56667777777888777889999883   47  8999996   7999999984        565554  6778776

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=91.50  E-value=0.12  Score=39.20  Aligned_cols=55  Identities=25%  Similarity=0.523  Sum_probs=39.8

Q ss_pred             eEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          300 IEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      +++.++.+..-|||.|..-.+  ..++|.+|..   ++||.++| |+        .|-.++  .+.|++|-
T Consensus         2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~---~spA~~aG~l~--------~GD~I~--~vng~~v~   59 (85)
T 2i04_A            2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVL---DGPAALDGKME--------TGDVIV--SVNDTCVL   59 (85)
T ss_dssp             EEEEEECBTTBSSEEEEECCSTTBCEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEECT
T ss_pred             EEEEEEECCCCCCEEEEcccCCCCCEEEEEECC---CChHHHcCCCC--------CCCEEE--EECCEECC
Confidence            566666677889999976333  3599999996   78999999 74        455443  57777664

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=91.40  E-value=0.13  Score=41.81  Aligned_cols=59  Identities=14%  Similarity=0.303  Sum_probs=39.4

Q ss_pred             ceeeeEeeecC-CCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          296 GELAIEIKLKE-GDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       296 ~E~~lEi~~~~-gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      |.|+..+.++- .+..|||.|...+++-++|++|.+   ++||+++| |        +.|-.++  .+.|++|-
T Consensus        10 ~~~~~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~---gspA~~aG~L--------~~GD~Il--~ING~~v~   70 (97)
T 2ejy_A           10 GHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILH---GGMIHRQGSL--------HVGDEIL--EINGTNVT   70 (97)
T ss_dssp             ---CEEEEEEECSSSCCSEEEEECTTCCEEEEEECS---SSHHHHHTCC--------CTTCEEE--EETTBCCC
T ss_pred             CCccEEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCC---CCHHHHcCCC--------CCCCEEE--EECCEECC
Confidence            55665555532 346899999876666789999996   79999999 7        3444433  36666553

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=90.79  E-value=0.22  Score=38.22  Aligned_cols=56  Identities=25%  Similarity=0.470  Sum_probs=40.1

Q ss_pred             eeeeEeeecCCC-cceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319          297 ELAIEIKLKEGD-SKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       297 E~~lEi~~~~gd-tRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      |+-++|...++. ..|||.+...+.| ++|.+|..   ++||.++||+        .|-.++  .+.|++|
T Consensus         4 ~~~~~~~~~~~~~~~lG~~~~~~~~g-~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v   60 (90)
T 2eaq_A            4 DMRISINQTPGKSLDFGFTIKWDIPG-IFVASVEA---GSPAEFSQLQ--------VDDEII--AINNTKF   60 (90)
T ss_dssp             EEEEEEECCTTCSSCCSEEEEEETTE-EEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEEC
T ss_pred             ceEEEEEecCCCCCcccEEEEecCCC-EEEEEECC---CChHHHcCCC--------CCCEEE--EECCEEc
Confidence            566777766654 4799988755544 78999985   7999999984        455443  6777765

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=90.74  E-value=0.2  Score=38.96  Aligned_cols=60  Identities=25%  Similarity=0.469  Sum_probs=42.5

Q ss_pred             cceeeeEeeecC-CCcceeeeeeecc--------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCe
Q 011319          295 GGELAIEIKLKE-GDSKLGFAISRTE--------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQ  364 (488)
Q Consensus       295 ~~E~~lEi~~~~-gdtRlGfaIsRTE--------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~  364 (488)
                      +||..-++.++. +...|||.|..-.        +.-++|++|..   ++||+++| |+        .|-.++  .+.|+
T Consensus         2 ~ge~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~---~spA~~aG~L~--------~GD~I~--~ing~   68 (98)
T 1ihj_A            2 AGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVP---DSPAHLCGRLK--------VGDRIL--SLNGK   68 (98)
T ss_dssp             -CCEEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECT---TSHHHHHCSCC--------TTCEEE--EETTE
T ss_pred             CCceEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCE
Confidence            467776777665 7778999996432        33689999986   79999999 73        455433  57777


Q ss_pred             eec
Q 011319          365 KVL  367 (488)
Q Consensus       365 kVl  367 (488)
                      +|.
T Consensus        69 ~v~   71 (98)
T 1ihj_A           69 DVR   71 (98)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            663

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=90.08  E-value=0.2  Score=38.47  Aligned_cols=53  Identities=26%  Similarity=0.376  Sum_probs=37.2

Q ss_pred             eEeeecCCCcceeeeeeec---ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          300 IEIKLKEGDSKLGFAISRT---EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT---EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .++.++.+...|||.|.--   .+| ++|.+|..   ++||+++| |+        .|-.++  .+.|+.|
T Consensus         4 ~~v~l~~~~~g~G~~~~~g~~~~~~-~~V~~V~~---~spA~~aG~L~--------~GD~I~--~ing~~v   60 (90)
T 2q9v_A            4 QDIFLWRKETGFGFRILGGNEPGEP-IYIGHIVP---LGAADTDGRLR--------SGDELI--SVDGTPV   60 (90)
T ss_dssp             EEEEEECBTTBCCEEEEECSSTTSC-EEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred             EEEEEEECCCccCEEEEccccCCCC-EEEEEECC---CChHHHCCCCC--------CCCEEE--EECCEEC
Confidence            3455556667899999742   234 99999996   79999999 73        454443  5667655

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=89.89  E-value=0.2  Score=38.98  Aligned_cols=57  Identities=30%  Similarity=0.474  Sum_probs=39.3

Q ss_pred             cceeeeEeeecCCCcceeeeeeeccc---ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          295 GGELAIEIKLKEGDSKLGFAISRTEE---GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       295 ~~E~~lEi~~~~gdtRlGfaIsRTEE---GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      +-++.|+|.  .+...|||.|.-..+   +-++|.+|..   ++||.++| |+        .|-.++  .+.|++|
T Consensus         3 g~~~~v~l~--~~~~~lG~~l~~~~~~~~~gv~V~~V~~---~spA~~aG~l~--------~GD~I~--~vng~~v   63 (98)
T 2opg_A            3 GCETTIEIS--KGRTGLGLSIVGGSDTLLGAIIIHEVYE---EGAACKDGRLW--------AGDQIL--EVNGIDL   63 (98)
T ss_dssp             CEEEEEEEE--CBTTBTCEEEEECTTSTTCSEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred             CCEEEEEEE--ECCCcccEEEecCCCCCCCCEEEEEECC---CChHHhCCCCC--------CCCEEE--EECCEEC
Confidence            344445544  556789999986553   5689999996   79999999 73        455443  5666655

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=89.84  E-value=0.23  Score=38.60  Aligned_cols=79  Identities=19%  Similarity=0.281  Sum_probs=50.6

Q ss_pred             eEeeecCCCcceeeeeeecc------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceeee
Q 011319          300 IEIKLKEGDSKLGFAISRTE------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIVS  372 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTE------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmVs  372 (488)
                      +++.++.+...|||.|....      +.-++|.+|..   ++||+++| |+        .|-.++  .+.|+.+.-    
T Consensus         5 ~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~---~spA~~aG~l~--------~GD~I~--~ing~~v~~----   67 (97)
T 2jil_A            5 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRP---GGPADREGTIK--------PGDRLL--SVDGIRLLG----   67 (97)
T ss_dssp             EEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEECSS----
T ss_pred             EEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECC---CCHHHHCCCCC--------CCCEEE--EECCEECCC----
Confidence            45555666789999997642      35689999996   79999999 83        455443  567765532    


Q ss_pred             cCCceeccCcccccccccccccccCceEEEEEE
Q 011319          373 STGAVRCFDTVSLSQKLSLHRHAKVPILLHVFL  405 (488)
Q Consensus       373 SsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm~  405 (488)
                             +++..+.+.|.   ....+|.|.|.-
T Consensus        68 -------~~~~~~~~~l~---~~g~~v~l~v~R   90 (97)
T 2jil_A           68 -------TTHAEAMSILK---QCGQEAALLIEY   90 (97)
T ss_dssp             -------CCHHHHHHHHH---HSCSEEEEEEEE
T ss_pred             -------CCHHHHHHHHH---cCCCeEEEEEEe
Confidence                   22333333332   256677776653

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=89.78  E-value=1  Score=35.97  Aligned_cols=39  Identities=28%  Similarity=0.434  Sum_probs=29.6

Q ss_pred             EeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-H
Q 011319          301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      ++.++.+...|||.|.-..+.=++|.+|..   +.||+++| |
T Consensus        18 ~v~l~~~~~~lG~~l~~~~~~g~~V~~V~~---~spA~~aG~l   57 (111)
T 2dlu_A           18 EVELINDGSGLGFGIVGGKTSGVVVRTIVP---GGLADRDGRL   57 (111)
T ss_dssp             EEEEECCSSCCCEEEECCSSSSBEEEEECT---TSSHHHHTCC
T ss_pred             EEEEEeCCCccCEEEeccCCCCEEEEEECC---CCHHHHcCCC
Confidence            444445566799999866545589999996   68999999 5

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=89.71  E-value=0.17  Score=42.33  Aligned_cols=40  Identities=18%  Similarity=0.341  Sum_probs=33.3

Q ss_pred             EeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHH
Q 011319          301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLS  343 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~  343 (488)
                      |+.+.-++.-|||.|+-+..|-|||+++..   |.+++|.|..
T Consensus         8 ~V~l~K~~~~LG~tI~~~g~g~~~I~rI~~---gg~a~r~g~L   47 (95)
T 3gge_A            8 EVNVYKSEDSLGLTITDNGVGYAFIKRIKD---GGVIDSVKTI   47 (95)
T ss_dssp             EEEEECCSSCCCEEEECSSSSCCEEEEECT---TSHHHHCTTC
T ss_pred             EEEEEECCCCceEEEEcCCCCcEEEEEEcC---CChHHhcCCC
Confidence            455556678999999977889999999996   7999999853

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=89.34  E-value=0.26  Score=37.91  Aligned_cols=53  Identities=28%  Similarity=0.378  Sum_probs=37.8

Q ss_pred             EeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319          301 EIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .+.++.+..-|||.|.... +..++|.+|..   ++||+++||+        .|-.++  .+.|++|
T Consensus         6 ~v~l~r~~~g~G~~~~~~~~~~g~~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v   59 (91)
T 1g9o_A            6 LCCLEKGPNGYGFHLHGEKGKLGQYIRLVEP---GSPAEKAGLL--------AGDRLV--EVNGENV   59 (91)
T ss_dssp             EEEEECBTTBCCEEEEECTTCSSEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEEC
T ss_pred             EEEEEeCCCcccEEEEecCCCCCEEEEEECC---CCHHHHCCCC--------CCCEEE--EECCEEC
Confidence            3455556668999997654 46789999985   7999999984        455433  5666655

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=89.33  E-value=1  Score=35.68  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             eeeEeeecCCCcceeeeeeec-------ccceEEEEEeecCCCCCccchhh
Q 011319          298 LAIEIKLKEGDSKLGFAISRT-------EEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       298 ~~lEi~~~~gdtRlGfaIsRT-------EEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      +.++|..+.+...|||.|...       .+.-++|.+|..   ++||.++|
T Consensus        14 ~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~---~spA~~aG   61 (108)
T 2jre_A           14 YSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIP---GSAAALDG   61 (108)
T ss_dssp             EEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECT---TSHHHHHS
T ss_pred             EEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCC---CCHHHHcC
Confidence            334443377788999999753       234689999996   78999999

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=89.30  E-value=0.25  Score=40.15  Aligned_cols=54  Identities=17%  Similarity=0.351  Sum_probs=37.5

Q ss_pred             eeeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          298 LAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       298 ~~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      +.++|..+. ...|||.|.-.+.| ++|++|..   ++||+++| |        +.|-.++  .+.|++|
T Consensus         4 ~~v~L~k~~-~~glG~~i~~~~~g-v~V~~V~~---gspA~~aG~L--------~~GD~Il--~Ing~~v   58 (106)
T 2la8_A            4 FNVDLMKKA-GKELGLSLSPNEIG-CTIADLIQ---GQYPEIDSKL--------QRGDIIT--KFNGDAL   58 (106)
T ss_dssp             EEEEECCBS-SSTTCCEEEECSSS-EEEEECCT---TSCHHHHTTC--------CTTCEEE--EESSCBC
T ss_pred             EEEEEEeCC-CCccCEEEEeCCCC-EEEEEECC---CCHHHHCCCC--------CCCCEEE--EECCEEC
Confidence            344554343 55699988776666 78999996   79999999 7        4555543  5677655

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=89.27  E-value=0.4  Score=37.21  Aligned_cols=56  Identities=20%  Similarity=0.462  Sum_probs=39.1

Q ss_pred             ceeeeEeeecCCCcceeeeeeec----------ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCee
Q 011319          296 GELAIEIKLKEGDSKLGFAISRT----------EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQK  365 (488)
Q Consensus       296 ~E~~lEi~~~~gdtRlGfaIsRT----------EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~k  365 (488)
                      |.+.+++.++.+. .|||.|..-          .+.=++|.+|..   +.||++ ||+        .|-.++  .+.|++
T Consensus         1 gs~~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~---~spA~~-gL~--------~GD~I~--~vng~~   65 (95)
T 1mfg_A            1 GSMEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQP---EGPASK-LLQ--------PGDKII--QANGYS   65 (95)
T ss_dssp             CEEEEEEEEECSS-SCSEEEEECBTSCCCSSSTTCCCEEEEEECT---TSTTTT-TCC--------TTCEEE--EETTEE
T ss_pred             CCeEEEEEECCCC-CCCEEEeCCcCccCCccccCCCCEEEEEECC---CCchhh-CCC--------CCCEEE--EECCEE
Confidence            4566777777755 899999852          223489999996   689999 984        454433  567766


Q ss_pred             e
Q 011319          366 V  366 (488)
Q Consensus       366 V  366 (488)
                      |
T Consensus        66 v   66 (95)
T 1mfg_A           66 F   66 (95)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=89.27  E-value=0.22  Score=39.20  Aligned_cols=57  Identities=21%  Similarity=0.343  Sum_probs=37.3

Q ss_pred             eeeeEeeecCCCcceeeeee-ec-------------ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeec
Q 011319          297 ELAIEIKLKEGDSKLGFAIS-RT-------------EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVS  362 (488)
Q Consensus       297 E~~lEi~~~~gdtRlGfaIs-RT-------------EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~  362 (488)
                      ++.++...+.+...|||.|. -+             .++-+||.+|..   ++||.++||+        .|-.++  .+.
T Consensus         7 ~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~---~spA~~aGl~--------~GD~I~--~in   73 (104)
T 3sfj_A            7 RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSE---GGPAEIAGLQ--------IGDKIM--QVN   73 (104)
T ss_dssp             EEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECT---TSHHHHHTCC--------TTCEEE--EET
T ss_pred             EEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECC---CChHHHcCCC--------CCCEEE--EEC
Confidence            34444444555567999998 11             123489999996   7999999985        454443  566


Q ss_pred             Ceee
Q 011319          363 NQKV  366 (488)
Q Consensus       363 g~kV  366 (488)
                      |++|
T Consensus        74 g~~v   77 (104)
T 3sfj_A           74 GWDM   77 (104)
T ss_dssp             TEEC
T ss_pred             CEEC
Confidence            6665

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=89.21  E-value=0.23  Score=38.94  Aligned_cols=54  Identities=30%  Similarity=0.481  Sum_probs=38.8

Q ss_pred             eEeeecCCCcceeeeeeecccc-eEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          300 IEIKLKEGDSKLGFAISRTEEG-FIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTEEG-FiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .++.++.+...|||.|....++ -++|.+|..   ++||+++| |+        .|-.++  .+.|++|
T Consensus        13 ~~v~l~k~~~glG~~~~~~~~~~gv~V~~V~~---~spA~~aG~l~--------~GD~I~--~vng~~v   68 (104)
T 3i4w_A           13 RRIVIHRGSTGLGFNIVGGEXGEGIFISFILA---GGPADLSGELR--------KGDQIL--SVNGVDL   68 (104)
T ss_dssp             EEEEEECBTTBTSEEEEECC-CCCEEEEEECT---TSHHHHHCCCC--------TTEEEE--EETTEEC
T ss_pred             EEEEEEeCCCccCEEEECCCCCCCEEEEEECC---CChHHhcCCCC--------CCCEEE--EECCEEC
Confidence            3455555567899999876653 589999996   79999999 73        455444  6777766

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=89.05  E-value=0.23  Score=40.93  Aligned_cols=60  Identities=23%  Similarity=0.504  Sum_probs=41.8

Q ss_pred             ceeeeEeeecCCCc---ceeeeeee-cccc--eEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecc
Q 011319          296 GELAIEIKLKEGDS---KLGFAISR-TEEG--FIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLP  368 (488)
Q Consensus       296 ~E~~lEi~~~~gdt---RlGfaIsR-TEEG--FiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlP  368 (488)
                      ++..-.+.++-+++   .|||.|+. +++|  -++|.+|..   ++||.++||+        .|-.+  =.+.|++|--
T Consensus         4 ~~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~---~spA~~aGL~--------~GD~I--l~vng~~v~~   69 (94)
T 3kzd_A            4 GKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKE---TGLASKKGLK--------AGDEI--LEINNRAADA   69 (94)
T ss_dssp             CCEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECT---TSHHHHTTCC--------TTCEE--EEETTEEGGG
T ss_pred             ccceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECC---CCHHHHcCCC--------CCCEE--EEECCEECCC
Confidence            44555666666665   79999987 5554  599999996   7999999984        55543  3778887754

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=88.63  E-value=0.22  Score=41.00  Aligned_cols=81  Identities=17%  Similarity=0.315  Sum_probs=50.4

Q ss_pred             eeEeeecCCCcceeeeeeec--ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceeeecCC
Q 011319          299 AIEIKLKEGDSKLGFAISRT--EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTG  375 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRT--EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsG  375 (488)
                      .+++.++-+...|||.|..-  .++.++|.+|..   +.||+++| |+        .|-.++  .|.|++|.-       
T Consensus        20 ~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~Il--~Vng~~v~~-------   79 (123)
T 1ueq_A           20 FLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIP---DGPAAQDGKME--------TGDVIV--YINEVCVLG-------   79 (123)
T ss_dssp             EEEEEEECCTTSCSEEEECCSSSSCCCEEEEECT---TSHHHHTSCCC--------TTCEEE--EETTEECTT-------
T ss_pred             EEEEEEEeCCCceeEEEecccCCCCCEEEEEECC---CCHHHHCCCCC--------CCCEEE--EECCEECCC-------
Confidence            35555666677899999853  345699999996   79999999 74        454443  467765532       


Q ss_pred             ceeccCcccccccccccccccCceEEEEE
Q 011319          376 AVRCFDTVSLSQKLSLHRHAKVPILLHVF  404 (488)
Q Consensus       376 aIrC~Dt~slsqkLslhr~a~~pI~lHvm  404 (488)
                          +++..+.+.|..+. ...+|.|.|.
T Consensus        80 ----~~~~~~~~~l~~~~-~g~~v~l~v~  103 (123)
T 1ueq_A           80 ----HTHADVVKLFQSVP-IGQSVNLVLC  103 (123)
T ss_dssp             ----SCHHHHHHHHHTSC-TTCEEEEEEE
T ss_pred             ----CCHHHHHHHHHhCC-CCCeEEEEEE
Confidence                23334444443221 2466776665

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=88.60  E-value=0.39  Score=37.76  Aligned_cols=56  Identities=16%  Similarity=0.329  Sum_probs=38.1

Q ss_pred             eeeeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          297 ELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       297 E~~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      ++.++|.-+. ...|||.|...+.| ++|++|..   ++||+++| |        +.|-.++  .+.|+.|-
T Consensus         9 ~~~v~l~~~~-~~glG~~~~~~~~g-v~V~~V~~---~spA~~aG~L--------~~GD~I~--~Ing~~v~   65 (96)
T 2qkv_A            9 KFNVDLMKKA-GKELGLSLSPNEIG-CTIADLIQ---GQYPEIDSKL--------QRGDIIT--KFNGDALE   65 (96)
T ss_dssp             CEEEEEECBT-TBCCCEEEEECSSS-EEEEEECT---TSCHHHHHHC--------CTTCEEE--EETTEECT
T ss_pred             eEEEEEEeCC-CCCccEEEEeCCCc-EEEEEeCC---CChHHhcCCC--------CCCCEEE--EECCEECC
Confidence            4444444333 45689988776666 79999996   79999999 7        4555544  56776553

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=88.54  E-value=0.49  Score=36.30  Aligned_cols=56  Identities=18%  Similarity=0.329  Sum_probs=38.3

Q ss_pred             eEeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecc
Q 011319          300 IEIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLP  368 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlP  368 (488)
                      ++|.-.++...|||.|.... +.-++|.+|..   ++||.++||        +.|-.++  .+.|++|--
T Consensus        10 v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~---~spA~~aGl--------~~GD~I~--~vng~~v~~   66 (91)
T 1m5z_A           10 VTLYKDSGMEDFGFSVADGLLEKGVYVKNIRP---AGPGDLGGL--------KPYDRLL--QVNHVRTRD   66 (91)
T ss_dssp             EEEECCTTCSSSSEEEEECTTSSCEEEEEECT---TSHHHHHTC--------CTTCEEE--EETTEECTT
T ss_pred             EEEEECCCCCCccEEEEeccCCCCEEEEEECC---CCHHHHcCC--------CCCCEEE--EECCEECCC
Confidence            33333344468999998643 34589999996   699999997        4565543  777876643

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=88.35  E-value=0.67  Score=37.17  Aligned_cols=40  Identities=30%  Similarity=0.495  Sum_probs=30.2

Q ss_pred             eEeeecCCCcceeeeeeeccc---ceEEEEEeecCCCCCccchhh-H
Q 011319          300 IEIKLKEGDSKLGFAISRTEE---GFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTEE---GFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      .++.++.+...|||.|....+   +-++|.+|..   ++||.++| |
T Consensus        19 ~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~---~spA~~aG~L   62 (116)
T 2dm8_A           19 MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYE---EGAAARDGRL   62 (116)
T ss_dssp             EEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCS---SSHHHHHTCC
T ss_pred             EEEEEEECCCcccEEEeCCCCCCcCCEEEEEECC---CChHHhCCCC
Confidence            344455667889999986433   5689999986   79999999 6

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=88.08  E-value=0.41  Score=38.15  Aligned_cols=55  Identities=27%  Similarity=0.535  Sum_probs=39.7

Q ss_pred             eeEeeecCCCcceeeeeeeccc-----ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          299 AIEIKLKEGDSKLGFAISRTEE-----GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTEE-----GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .+++.++.+...|||.|....+     +-++|.+|..   ++||.++| |        +.|-.++  .+.|++|
T Consensus        12 ~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~---~spA~~aG~l--------~~GD~I~--~ing~~v   72 (111)
T 2koj_A           12 RLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILP---RGAAIQDGRL--------KAGDRLI--EVNGVDL   72 (111)
T ss_dssp             EEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECS---SSHHHHHCSS--------CTTCEEE--EETTEEC
T ss_pred             EEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECC---CChHHHCCCC--------CCCCEEE--EECCEEC
Confidence            4455566667789999986542     4589999996   79999999 7        3455443  5777766

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=88.01  E-value=0.38  Score=37.51  Aligned_cols=54  Identities=11%  Similarity=0.222  Sum_probs=38.2

Q ss_pred             eEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccch-hhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          300 IEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTR-SGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~R-sGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      ++|.-.+ ...|||.|.-.++|-++|++|.+   ++||++ +||        +.|-.++  .+.|+.|.
T Consensus         5 V~l~K~~-~~~lG~~i~~~~~~~~~I~~V~~---gspA~~~agL--------~~GD~I~--~Ing~~v~   59 (88)
T 1kwa_A            5 VQFQKNT-DEPMGITLKMNELNHCIVARIMH---GGMIHRQGTL--------HVGDEIR--EINGISVA   59 (88)
T ss_dssp             EEEEECS-SSCCCEEEECSCGGGEEEEEECT---TSHHHHHTCC--------CTTCEEE--EETTEEGG
T ss_pred             EEEEeCC-CCceeEEEEeCCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEECC
Confidence            4444333 35699999887778899999996   799999 777        4455443  36666653

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=87.93  E-value=0.48  Score=39.49  Aligned_cols=63  Identities=22%  Similarity=0.420  Sum_probs=44.1

Q ss_pred             eccccc-eeeeEeeec-CCCcceeeeeeecc------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEee
Q 011319          291 YAPVGG-ELAIEIKLK-EGDSKLGFAISRTE------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRV  361 (488)
Q Consensus       291 y~P~~~-E~~lEi~~~-~gdtRlGfaIsRTE------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv  361 (488)
                      |.|... +..+++.++ .+..-|||.|.-..      +.-|||.+|..   +.||+++| |        +.|-.++  .|
T Consensus        17 ~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~---gspA~~aG~L--------~~GD~Il--~V   83 (127)
T 1wg6_A           17 LSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIH---GGAAFKDGRL--------RMNDQLI--AV   83 (127)
T ss_dssp             SSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCS---SSSTHHHHTS--------CSCCBEE--EE
T ss_pred             cCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECC---CCHHHHCCCC--------CCCCEEE--EE
Confidence            444433 456778876 77889999998544      24699999996   79999999 7        3455443  46


Q ss_pred             cCeee
Q 011319          362 SNQKV  366 (488)
Q Consensus       362 ~g~kV  366 (488)
                      .|+.|
T Consensus        84 ng~~v   88 (127)
T 1wg6_A           84 NGETL   88 (127)
T ss_dssp             TTEES
T ss_pred             CCEEC
Confidence            66554

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=87.92  E-value=0.34  Score=39.61  Aligned_cols=84  Identities=20%  Similarity=0.310  Sum_probs=51.5

Q ss_pred             cccceeeeEeeecCCCcceeeeeeeccc---ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecc
Q 011319          293 PVGGELAIEIKLKEGDSKLGFAISRTEE---GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLP  368 (488)
Q Consensus       293 P~~~E~~lEi~~~~gdtRlGfaIsRTEE---GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlP  368 (488)
                      |..+.+.++|...++ ..|||.|....+   |-+||..|..   +.||+++| |        +.|-.++  .+.|++|. 
T Consensus        12 ~~~~~~~v~l~k~~~-~~lG~~i~~~~~~~~~~~~V~~V~~---~spA~~aG~l--------~~GD~Il--~Ing~~v~-   76 (117)
T 1v62_A           12 NASGPLMVEIVKTPG-SALGISLTTTSLRNKSVITIDRIKP---ASVVDRSGAL--------HPGDHIL--SIDGTSME-   76 (117)
T ss_dssp             CSSSSEEEEEECCTT-CCCCCEEEEECCSSSCEEEEEECCT---TSHHHHHTCC--------CTTCBEE--EETTEETT-
T ss_pred             CCCCcEEEEEEcCCC-CcccEEEEccCCCCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEECC-
Confidence            334445555555442 579999987533   6699999996   79999999 6        3444443  46666552 


Q ss_pred             eeeecCCceeccCcccccccccccccccCceEEEEE
Q 011319          369 WIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVF  404 (488)
Q Consensus       369 wmVsSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm  404 (488)
                                ..++..+.+.|.   .....|.|.|+
T Consensus        77 ----------~~~~~~~~~~l~---~~g~~v~l~v~   99 (117)
T 1v62_A           77 ----------HCSLLEATKLLA---SISEKVRLEIL   99 (117)
T ss_dssp             ----------SCCHHHHHHHHH---SCSSEEEEEEC
T ss_pred             ----------CCCHHHHHHHHH---hCCCeEEEEEE
Confidence                      123333444433   35677777664

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=87.73  E-value=0.36  Score=38.31  Aligned_cols=55  Identities=29%  Similarity=0.526  Sum_probs=39.2

Q ss_pred             eeEeeecCCCcceeeeeeecc-------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          299 AIEIKLKEGDSKLGFAISRTE-------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTE-------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .+++.++-+...|||.|..-.       +.-++|.+|..   ++||+++| |+        .|-.++  .+.|++|
T Consensus         4 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v   66 (105)
T 2awx_A            4 IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIE---GGAAHKDGKLQ--------IGDKLL--AVNSVSL   66 (105)
T ss_dssp             EEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred             EEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECC---CCHHHHCCCCC--------CCCEEE--EECCEEC
Confidence            456777667789999998531       34589999996   79999999 73        455443  5666655

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=87.68  E-value=1.5  Score=35.90  Aligned_cols=62  Identities=21%  Similarity=0.445  Sum_probs=38.1

Q ss_pred             eeeccccceeeeEeeecCCC-cceeeeeeecccc--eEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCe
Q 011319          289 LWYAPVGGELAIEIKLKEGD-SKLGFAISRTEEG--FIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQ  364 (488)
Q Consensus       289 LWy~P~~~E~~lEi~~~~gd-tRlGfaIsRTEEG--FiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~  364 (488)
                      +||.+..   +-++.++.+. ..|||.|....+.  .++|.+|..   ++||+++| |        +.|-.++  .+.|+
T Consensus        18 ~~~q~~~---~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~---gspA~~aG~L--------~~GD~I~--~Ing~   81 (114)
T 2gzv_A           18 LYFQSMV---PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFD---NTPAALDGTV--------AAGDEIT--GVNGR   81 (114)
T ss_dssp             ----CCC---CEEEEEECCTTSCCSEEEEECCC--CCEEEEEECT---TSHHHHHCCC--------CTTCEEE--EETTE
T ss_pred             eeeccCC---CEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECC---CChHHHCCCC--------CCCCEEE--EECCE
Confidence            5676653   2234444433 4599999865543  699999996   79999999 6        3454433  57777


Q ss_pred             ee
Q 011319          365 KV  366 (488)
Q Consensus       365 kV  366 (488)
                      +|
T Consensus        82 ~v   83 (114)
T 2gzv_A           82 SI   83 (114)
T ss_dssp             EC
T ss_pred             EC
Confidence            77

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=87.55  E-value=0.45  Score=36.92  Aligned_cols=54  Identities=17%  Similarity=0.436  Sum_probs=36.2

Q ss_pred             eEeeecCCCcceeeeeee-cccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          300 IEIKLKEGDSKLGFAISR-TEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsR-TEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      ++|.-......|||.|.. +++.-++|.+|..   ++||.++| |+        .|-.++  .+.|++|
T Consensus         7 v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v   62 (95)
T 2vwr_A            7 VALHKRDSGEQLGIKLVRRTDEPGVFILDLLE---GGLAAQDGRLS--------SNDRVL--AINGHDL   62 (95)
T ss_dssp             EEEECSSTTCCCCEEEEECSSSCSEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred             EEEEECCCCCcccEEEEeccCCCCEEEEEeCC---CChHHHCCCCC--------CCCEEE--EECCEEC
Confidence            344433334679999964 4455699999996   79999999 73        454433  5677655

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=87.30  E-value=0.34  Score=38.45  Aligned_cols=41  Identities=24%  Similarity=0.406  Sum_probs=31.3

Q ss_pred             eEeeecCCCcceeeeeeec--------ccceEEEEEeecCCCCCccchhh-HH
Q 011319          300 IEIKLKEGDSKLGFAISRT--------EEGFIYISTVIDDDENIPSTRSG-LS  343 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT--------EEGFiyVsSV~~~~~g~~a~RsG-L~  343 (488)
                      +++.++.++.-|||.|...        .+.-+||.+|..   +.||+++| |+
T Consensus         9 ~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~   58 (105)
T 1wha_A            9 HVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAE---GGAAHRAGTLQ   58 (105)
T ss_dssp             EEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCT---TSSHHHHSSCC
T ss_pred             EEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCC---CCHHHHcCCCC
Confidence            4556666677799999853        245689999996   79999999 74

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=87.23  E-value=0.44  Score=38.22  Aligned_cols=78  Identities=23%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             eEeeecCCCcceeeeeee--------cccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeeccee
Q 011319          300 IEIKLKEGDSKLGFAISR--------TEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWI  370 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsR--------TEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwm  370 (488)
                      +++.++.+..-|||.|.-        ..+.-+||.+|..   ++||+++| |+        .|-.++  .+.|++|.-  
T Consensus         6 ~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~---~s~A~~aG~l~--------~GD~I~--~vng~~v~~--   70 (113)
T 2g5m_B            6 FPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTE---GGAAHRDGRIQ--------VNDLLV--EVDGTSLVG--   70 (113)
T ss_dssp             EEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCT---TSHHHHHTCSC--------TTCBEE--EETTEECSS--
T ss_pred             EEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEECCC--
Confidence            456666667889999986        1345689999996   79999999 83        454433  566666531  


Q ss_pred             eecCCceeccCcccccccccccccccCceEEEEE
Q 011319          371 VSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVF  404 (488)
Q Consensus       371 VsSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm  404 (488)
                               +   +..+....-+....+|.|.|.
T Consensus        71 ---------~---~~~~~~~~~~~~g~~v~l~v~   92 (113)
T 2g5m_B           71 ---------V---TQSFAASVLRNTKGRVRFMIG   92 (113)
T ss_dssp             ---------C---CHHHHHHHHHHSCSSCEEEEE
T ss_pred             ---------C---CHHHHHHHHhcCCCeEEEEEE
Confidence                     1   122222233335678887775

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=87.10  E-value=0.72  Score=38.85  Aligned_cols=49  Identities=22%  Similarity=0.441  Sum_probs=35.6

Q ss_pred             CCCcceeeeeeecccc--------------eEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          306 EGDSKLGFAISRTEEG--------------FIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       306 ~gdtRlGfaIsRTEEG--------------FiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      .+...|||.|.-....              -++|++|..   ++||+++||+        .|-.++  .|.|+.|.
T Consensus        36 ~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~---gspA~~aGL~--------~GD~Il--~Vng~~v~   98 (132)
T 3l4f_D           36 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDE---GGVAWRAGLR--------MGDFLI--EVNGQNVV   98 (132)
T ss_dssp             CTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECT---TSGGGGGTCC--------TTCEEE--EESSSBCT
T ss_pred             CCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence            3456899999877652              389999996   7999999984        454433  56777663

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=87.09  E-value=0.28  Score=38.04  Aligned_cols=51  Identities=22%  Similarity=0.433  Sum_probs=36.0

Q ss_pred             eeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          302 IKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       302 i~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      +.++.+...|||.+.. +.| ++|.+|..   ++||.++||+        .|-.++  .+.|++|-
T Consensus         7 v~l~~~~~g~G~~l~~-~~~-~~V~~V~~---~spA~~aGl~--------~GD~I~--~vng~~v~   57 (91)
T 2f5y_A            7 ITIPRGKDGFGFTICC-DSP-VRVQAVDS---GGPAERAGLQ--------QLDTVL--QLNERPVE   57 (91)
T ss_dssp             EEEECBTTBTSEEEEC-SSS-CEEEEECT---TSHHHHHTCC--------TTCEEE--EETTEECT
T ss_pred             EEEEeCCCCccEEEec-CCC-EEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence            4444566779999864 455 89999996   7999999984        555443  56777653

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=87.05  E-value=0.29  Score=37.04  Aligned_cols=55  Identities=22%  Similarity=0.308  Sum_probs=37.8

Q ss_pred             eeEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          299 AIEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      ++++.++ +...|||.|..-.+  .-++|++|..   ++||.++||+        .|-.++  .+.|++|-
T Consensus         2 ~~~v~l~-~~~~~G~~l~gg~~~~~~v~V~~V~~---~spA~~aGl~--------~GD~I~--~vng~~v~   58 (85)
T 1rgw_A            2 AYSVTLT-GPGPWGFRLQGGKDFNMPLTISRITP---GSKAAQSQLS--------QGDLVV--AIDGVNTD   58 (85)
T ss_dssp             EEEEEEC-CSSCCCEEECCCGGGTSCCBEEEECT---TSHHHHSSCC--------CCSBEE--EETTEECT
T ss_pred             cEEEEEe-CCCccCEEEEeccCCCCCeEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence            4555564 56789999964322  2379999985   7899999984        555443  57777664

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=86.82  E-value=0.56  Score=36.09  Aligned_cols=55  Identities=16%  Similarity=0.289  Sum_probs=38.8

Q ss_pred             eeEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          299 AIEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      +..+.++ ++..|||.|....+  .-++|.+|..   ++||+++||+        .|-.++  .+.|++|.
T Consensus         4 ~~~v~~~-~~~~~G~~l~~~~~~~~g~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v~   60 (91)
T 2pkt_A            4 TQQIDLQ-GPGPWGFRLVGGKDFEQPLAISRVTP---GSKAALANLC--------IGDVIT--AIDGENTS   60 (91)
T ss_dssp             EEEEEEE-SSSCCSEEEEEEGGGTEEEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEECT
T ss_pred             cEEEEEC-CCCCCCEEEEccCCCCCCeEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence            4455555 45789999986543  4589999996   7999999984        455443  67777664

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=86.71  E-value=0.49  Score=36.41  Aligned_cols=55  Identities=29%  Similarity=0.546  Sum_probs=38.1

Q ss_pred             eEeeecCCCcceeeeeeec-------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          300 IEIKLKEGDSKLGFAISRT-------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT-------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      .++.++.+..-|||.|...       .+.-++|.+|..   ++||+++| |        +.|-.++  .+.|++|.
T Consensus         5 ~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~---~spA~~aG~l--------~~GD~I~--~vng~~v~   67 (94)
T 2fe5_A            5 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIE---GGAAQKDGRL--------QIGDRLL--AVNNTNLQ   67 (94)
T ss_dssp             EEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECT---TSHHHHHCCC--------CTTCEEE--EETTEECT
T ss_pred             EEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECC---CChHHHcCCC--------CCCCEEE--EECCEECC
Confidence            3455556677899999842       234589999996   68999999 7        3455433  57777663

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=86.46  E-value=0.5  Score=37.62  Aligned_cols=78  Identities=18%  Similarity=0.275  Sum_probs=48.0

Q ss_pred             EeeecCCCcceeeeeee--------cccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceee
Q 011319          301 EIKLKEGDSKLGFAISR--------TEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIV  371 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsR--------TEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmV  371 (488)
                      ++.++.+..-|||.|..        ..+.-+||.+|..   +.||.++| |+        .|-.++  .|.|++|.-   
T Consensus        12 ~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v~~---   75 (107)
T 1wf8_A           12 PVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTE---GGAAQRDGRIQ--------VNDQIV--EVDGISLVG---   75 (107)
T ss_dssp             EEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECT---TCHHHHHCSSC--------TTCBEE--EETTEECBS---
T ss_pred             EEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCC---CCHHHHcCCCC--------CCCEEE--EECCEECCC---
Confidence            34444456689999987        1345699999996   79999999 74        344433  566665531   


Q ss_pred             ecCCceeccCcccccccccccccccCceEEEEEE
Q 011319          372 SSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFL  405 (488)
Q Consensus       372 sSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm~  405 (488)
                              +++   .+...+.+....+|.|.|.-
T Consensus        76 --------~~~---~~~~~~~~~~~~~v~l~v~R   98 (107)
T 1wf8_A           76 --------VTQ---NFAATVLRNTKGNVRFVIGR   98 (107)
T ss_dssp             --------CCH---HHHHHHHHHCCSEEEEEEEE
T ss_pred             --------CCH---HHHHHHHhcCCCeEEEEEEe
Confidence                    112   22222333456778877754

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=86.25  E-value=0.43  Score=36.95  Aligned_cols=55  Identities=22%  Similarity=0.426  Sum_probs=38.0

Q ss_pred             eEeeecCCCcceeeeeeec-----ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          300 IEIKLKEGDSKLGFAISRT-----EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT-----EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      .++.+..++..|||.|.--     .++-++|.+|..   ++||.++| |+        .|-.++  .+.|++|-
T Consensus         7 ~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~---~spA~~aG~l~--------~GD~I~--~vng~~v~   67 (96)
T 1d5g_A            7 FEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIP---QGAAESDGRIH--------KGDRVL--AVNGVSLE   67 (96)
T ss_dssp             EEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECT---TSHHHHTTCCC--------TTCEEE--EETTEECT
T ss_pred             EEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCC---CChHHHcCCCC--------CCCEEE--EECCEECC
Confidence            3455555678999999842     134689999996   78999999 73        454433  56776664

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=86.14  E-value=0.54  Score=38.64  Aligned_cols=53  Identities=34%  Similarity=0.564  Sum_probs=36.4

Q ss_pred             EeeecCCCcceeeeeeec-------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          301 EIKLKEGDSKLGFAISRT-------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRT-------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      ++.++.+...|||.|..-       .++-++|.+|..   +.||.|+| |+        .|-.++  .|.|++|
T Consensus        27 ~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~---gspA~~aG~L~--------~GD~Il--~Vng~~v   87 (117)
T 2byg_A           27 EIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIID---GGAAQKDGRLQ--------VGDRLL--MVNNYSL   87 (117)
T ss_dssp             EEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred             EEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEEC
Confidence            444445568999999842       244589999996   79999999 73        454443  4666655

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=85.90  E-value=0.38  Score=42.72  Aligned_cols=41  Identities=24%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             eEeeecCCCcceeeeeee--------cccceEEEEEeecCCCCCccchhh-HH
Q 011319          300 IEIKLKEGDSKLGFAISR--------TEEGFIYISTVIDDDENIPSTRSG-LS  343 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsR--------TEEGFiyVsSV~~~~~g~~a~RsG-L~  343 (488)
                      +++.++-+...|||.|..        ...+-|||++|..   +.||+|+| |+
T Consensus        82 ~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~---gspA~~aG~L~  131 (170)
T 3egg_C           82 FPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTE---GGAAHRDGRIQ  131 (170)
T ss_dssp             EEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECT---TSHHHHHCCCC
T ss_pred             EEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECC---CChHHHCCCCC
Confidence            345555555789999987        1346799999996   79999999 63

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.75  E-value=0.51  Score=37.16  Aligned_cols=56  Identities=14%  Similarity=0.388  Sum_probs=39.6

Q ss_pred             eeEeeecCCCcceeeeeeecc----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          299 AIEIKLKEGDSKLGFAISRTE----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTE----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      .+++.++-+...|||.|....    ++-++|.+|..   +.||.++| |+        .|-.++  .|.|++|.
T Consensus        12 ~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~---~spA~~aG~l~--------~GD~I~--~vng~~v~   72 (104)
T 2djt_A           12 HFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLK---DGPAQRCGRLE--------VGDLVL--HINGESTQ   72 (104)
T ss_dssp             CEEEEEECCSSSCCEEEECCEETTEECCCEEEEECT---TCHHHHHCSCC--------TTCBEE--EETTEECT
T ss_pred             eEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEECC
Confidence            445556666678999998632    45689999986   79999999 73        455443  57777653

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=85.52  E-value=0.6  Score=36.10  Aligned_cols=52  Identities=23%  Similarity=0.425  Sum_probs=37.4

Q ss_pred             eeecCCCcceeeeeeec--------ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319          302 IKLKEGDSKLGFAISRT--------EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       302 i~~~~gdtRlGfaIsRT--------EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      +.++.+...|||.|...        +++-++|.+|..   ++||.++||+        .|-.++  .+.|++|
T Consensus         7 v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v   66 (97)
T 2w4f_A            7 LTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSE---EGPAARAGVR--------VGDKLL--EVNGVAL   66 (97)
T ss_dssp             EEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECT---TSHHHHHTCC--------TTCEEE--EETTEEC
T ss_pred             EEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECC---CChHHHcCCC--------CCCEEE--EECCEEC
Confidence            44444577899999752        356799999996   7999999984        455443  6777765

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=85.47  E-value=0.61  Score=36.95  Aligned_cols=47  Identities=23%  Similarity=0.473  Sum_probs=33.5

Q ss_pred             Ccceeeeeee---------cccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          308 DSKLGFAISR---------TEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       308 dtRlGfaIsR---------TEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      ...|||.|..         ..+..++|..|..   +.||.++||+        .|-.++  .+.|++|.
T Consensus        26 ~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~---~spA~~aGl~--------~GD~I~--~vng~~v~   81 (104)
T 2z17_A           26 NETFGFEIQSYRPQNQNACSSEMFTLICKIQE---DSPAHCAGLQ--------AGDVLA--NINGVSTE   81 (104)
T ss_dssp             TSCCSEEEEECCCCCCSSSCCSCCEEEEEECT---TSHHHHHTCC--------TTCBCC--EETTEECT
T ss_pred             CCCccEEEEeeecccCCcccCCCCeEEEEECC---CChHHHcCCC--------CCCEEE--EECCEEcC
Confidence            3579999986         2356899999996   7999999983        444333  55666553

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=85.42  E-value=0.56  Score=37.61  Aligned_cols=39  Identities=28%  Similarity=0.406  Sum_probs=29.3

Q ss_pred             EeeecCCCcceeeeeeec------ccceEEEEEeecCCCCCccchhh-H
Q 011319          301 EIKLKEGDSKLGFAISRT------EEGFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRT------EEGFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      ++.++-+..-|||.|..-      .+.-+||.+|..   +.||.++| |
T Consensus        18 ~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~---~spA~~aG~L   63 (108)
T 2d92_A           18 IVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVA---DGVAERSGGL   63 (108)
T ss_dssp             EEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECT---TCHHHHHTCC
T ss_pred             EEEEEECCCccCEEEecccccCCCCCCCEEEEEECC---CCHHHHCCCC
Confidence            344444456899999752      246699999996   79999999 7

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=85.38  E-value=0.61  Score=38.75  Aligned_cols=65  Identities=20%  Similarity=0.371  Sum_probs=41.2

Q ss_pred             EeeeccccceeeeEeeecCCCcceeeeeeecc-----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEee
Q 011319          288 RLWYAPVGGELAIEIKLKEGDSKLGFAISRTE-----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRV  361 (488)
Q Consensus       288 RLWy~P~~~E~~lEi~~~~gdtRlGfaIsRTE-----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv  361 (488)
                      .+|+.| ..+-.++|. +.....|||.|..-.     +.-+||++|..   +.||+|+| |        +.|-.++  .+
T Consensus        17 ~~~~~~-~~~~~v~l~-k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~---gspA~~aG~L--------~~GD~Il--~V   81 (118)
T 3b76_A           17 NLYFQS-MHEKVVNIQ-KDPGESLGMTVAGGASHREWDLPIYVISVEP---GGVISRDGRI--------KTGDILL--NV   81 (118)
T ss_dssp             -CCCEE-EEEEEEEEE-CCTTCCCCEEEEECSCSTTCCCCEEEEEECT---TSHHHHHCSS--------CTTCEEE--EE
T ss_pred             ccccCC-CCcEEEEEE-eCCCCccCEEEecCCCCCCCCCCEEEEEECC---CCHHHHCCCC--------CCCCEEE--EE
Confidence            344444 345556665 333578999998542     22389999996   79999999 7        3454443  46


Q ss_pred             cCeeec
Q 011319          362 SNQKVL  367 (488)
Q Consensus       362 ~g~kVl  367 (488)
                      .|+.|.
T Consensus        82 Ng~~v~   87 (118)
T 3b76_A           82 DGVELT   87 (118)
T ss_dssp             TTEEGG
T ss_pred             CCEECC
Confidence            666554

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=85.29  E-value=0.61  Score=35.80  Aligned_cols=54  Identities=31%  Similarity=0.448  Sum_probs=39.6

Q ss_pred             EeeecCCCcceeeeeeeccc-ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          301 EIKLKEGDSKLGFAISRTEE-GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTEE-GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      .+.++.+...|||.|....+ .-++|.+|..   ++||.++||        +.|-.++  .+.|++|.
T Consensus         7 ~v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~---~spA~~aGl--------~~GD~I~--~ing~~v~   61 (90)
T 2he4_A            7 LCHLRKGPQGYGFNLHSDKSRPGQYIRSVDP---GSPAARSGL--------RAQDRLI--EVNGQNVE   61 (90)
T ss_dssp             EEEEECBTTBCCEEEEECSSSSSEEEEEECT---TSHHHHHTC--------CTTCEEE--EETTEECT
T ss_pred             EEEEEECCCCccEEEEccCCCCCEEEEEECC---CChHHHCCC--------CCCCEEE--EECCEECC
Confidence            45566666789999986653 4689999996   799999998        3555443  67777663

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=85.09  E-value=0.66  Score=36.93  Aligned_cols=59  Identities=20%  Similarity=0.439  Sum_probs=42.4

Q ss_pred             cceeeeEeeecCCCcceeeeeeec----------ccceEEEEEeecCCCCCccchh-hHHHHHHHHHhcCcEEEEEeecC
Q 011319          295 GGELAIEIKLKEGDSKLGFAISRT----------EEGFIYISTVIDDDENIPSTRS-GLSILYKEAVSASKLLVVSRVSN  363 (488)
Q Consensus       295 ~~E~~lEi~~~~gdtRlGfaIsRT----------EEGFiyVsSV~~~~~g~~a~Rs-GL~~Ly~~A~~a~kLLVISRv~g  363 (488)
                      ...-+.++.++.+...|||.|.--          .+.-+||++|..   +.||+++ ||        +.|-.++  .|.|
T Consensus         5 ~~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~---~spA~~aggL--------~~GD~Il--~vng   71 (107)
T 1uhp_A            5 SSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVD---SGPAAKEGGL--------QIHDRII--EVNG   71 (107)
T ss_dssp             CSSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECS---SSHHHHTTCC--------CSSCEEE--EETT
T ss_pred             cCcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCC---CChHHHcCCC--------CCCCEEE--EECC
Confidence            334466777887789999999742          244589999996   7999999 87        4455443  5777


Q ss_pred             eee
Q 011319          364 QKV  366 (488)
Q Consensus       364 ~kV  366 (488)
                      ++|
T Consensus        72 ~~v   74 (107)
T 1uhp_A           72 RDL   74 (107)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            765

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=85.08  E-value=0.48  Score=37.70  Aligned_cols=54  Identities=22%  Similarity=0.438  Sum_probs=36.8

Q ss_pred             eEeeecCCCcceeeeeee-c---------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          300 IEIKLKEGDSKLGFAISR-T---------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsR-T---------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .++.++-++..|||.|.. |         .++-+||++|..   ++||+++| |+        .|-.++  .+.|++|
T Consensus        11 ~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v   75 (108)
T 1q7x_A           11 FEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIP---QGAAESDGRIH--------KGDRVL--AVNGVSL   75 (108)
T ss_dssp             EEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECT---TSTHHHHTCCC--------SSCEEE--EETTEEC
T ss_pred             EEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECC---CChHHHCCCCC--------CCCEEE--EECCEEC
Confidence            344444556889999982 1         234689999996   79999999 73        454443  5677655

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=84.93  E-value=0.68  Score=36.25  Aligned_cols=54  Identities=31%  Similarity=0.481  Sum_probs=37.3

Q ss_pred             EeeecCCCcceeeeeeecc-------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          301 EIKLKEGDSKLGFAISRTE-------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTE-------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      ++.++-+...|||.|....       +.=++|.+|..   ++||.++| |        +.|-.++  .+.|++|-
T Consensus        10 ~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~I~--~vng~~v~   71 (101)
T 2jik_A           10 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKE---NGAAALDGRL--------QEGDKIL--SVNGQDLK   71 (101)
T ss_dssp             EEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECT---TSHHHHHCCC--------CTTCEEE--EETTEECS
T ss_pred             EEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECC---CCHHHHCCCC--------CCCCEEE--EECCEECC
Confidence            3444455689999998732       34589999986   78999999 7        3455433  56777654

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=84.71  E-value=0.73  Score=35.11  Aligned_cols=55  Identities=13%  Similarity=0.237  Sum_probs=37.4

Q ss_pred             eEeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecc
Q 011319          300 IEIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLP  368 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlP  368 (488)
                      +++.+ .++..|||.|..-.  +.-++|.+|..   ++||.++||+        .|-.++  .+.|++|--
T Consensus         5 ~~v~l-~~~~~~G~~l~~g~~~~~~~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v~~   61 (88)
T 2uzc_A            5 YSVSL-VGPAPWGFRLQGGKDFNMPLTISSLKD---GGKAAQANVR--------IGDVVL--SIDGINAQG   61 (88)
T ss_dssp             EEEEE-ESSSCCCEEEEEEGGGTEEEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEECTT
T ss_pred             EEEEE-cCCCcccEEEECcCCCCCCeEEEEECC---CChHHHcCCC--------CCCEEE--EECCEECCC
Confidence            34444 35678999997522  33589999996   7999999984        455443  677776643

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=84.62  E-value=0.66  Score=38.23  Aligned_cols=53  Identities=28%  Similarity=0.456  Sum_probs=37.0

Q ss_pred             EeeecCCCcceeeeeeecc-----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          301 EIKLKEGDSKLGFAISRTE-----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTE-----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      ++.++-+...|||.|....     +.-++|++|..   ++||+++| |+        .|-.++  .|.|++|
T Consensus        28 ~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~Il--~Vng~~v   86 (117)
T 2fne_A           28 SITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFA---KGAASEDGRLK--------RGDQII--AVNGQSL   86 (117)
T ss_dssp             EEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred             EEEEEeCCCcccEEEecccCCCCCCCCEEEEEECC---CChHHHcCCCC--------CCCEEE--EECCEEC
Confidence            4555556678999998642     34589999996   79999999 73        454443  4666655

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=84.50  E-value=3.3  Score=33.47  Aligned_cols=70  Identities=23%  Similarity=0.281  Sum_probs=44.5

Q ss_pred             eeecCCCcceeeeeeecc---cceEEEEEeecCCCCCccchhh-HH-------------------HHHHHHHhcC---cE
Q 011319          302 IKLKEGDSKLGFAISRTE---EGFIYISTVIDDDENIPSTRSG-LS-------------------ILYKEAVSAS---KL  355 (488)
Q Consensus       302 i~~~~gdtRlGfaIsRTE---EGFiyVsSV~~~~~g~~a~RsG-L~-------------------~Ly~~A~~a~---kL  355 (488)
                      +..+.+...|||.|.-..   ..-++|.+|..   +.||+++| |+                   ++.+..+.++   .+
T Consensus        20 ~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~---~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~   96 (119)
T 1x6d_A           20 ILHKEEGAGLGFSLAGGADLENKVITVHRVFP---NGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQA   96 (119)
T ss_dssp             EEECCTTSCCSEEEECCSSSSCSSCEEEEECS---SSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEE
T ss_pred             EEEeCCCCccCEEEeCCCCCCCCCEEEEEECC---CChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEE
Confidence            334555788999997543   24589999996   79999999 52                   2333222222   35


Q ss_pred             EEEEeecCeeecceeeecC
Q 011319          356 LVVSRVSNQKVLPWIVSST  374 (488)
Q Consensus       356 LVISRv~g~kVlPwmVsSs  374 (488)
                      |+|-|=+.++.+.-+-+++
T Consensus        97 l~v~R~~~~~~~~~~~s~~  115 (119)
T 1x6d_A           97 VIVTRKLTPEAMPDLNSSG  115 (119)
T ss_dssp             EEEEECCCSSSCCCCCCSC
T ss_pred             EEEEcCCCccchhhccCCC
Confidence            6777766666666555544

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=84.50  E-value=0.65  Score=36.82  Aligned_cols=55  Identities=29%  Similarity=0.364  Sum_probs=37.9

Q ss_pred             eEeeecCCCcceeeeeeec--ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          300 IEIKLKEGDSKLGFAISRT--EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT--EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      .++.++-+...|||.|..-  ...-+||.+|..   +.||+++| |        +.|-.++  .+.|++|.
T Consensus        11 ~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~---~spA~~aG~L--------~~GD~Il--~ing~~v~   68 (103)
T 1uep_A           11 LDVHLRRMESGFGFRILGGDEPGQPILIGAVIA---MGSADRDGRL--------HPGDELV--YVDGIPVA   68 (103)
T ss_dssp             ECCEEESSSSSCCEEECCCCSTTSCCBEEEECT---TSTTGGGTCC--------CTTCEEE--EETTEECT
T ss_pred             EEEEEEeCCCccCEEEeeecCCCCCeEEEEeCC---CChHHhCCCC--------CCCCEEE--EECCEECC
Confidence            3445555677899999762  234589999996   79999999 7        3455444  56776553

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=84.50  E-value=0.72  Score=35.89  Aligned_cols=38  Identities=13%  Similarity=0.330  Sum_probs=28.5

Q ss_pred             eeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HH
Q 011319          299 AIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LS  343 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~  343 (488)
                      -+.+.....+..+||.+.    |-+||++|..   +.||+++| |+
T Consensus         3 ~v~l~~~~~~~~~G~~~~----~gv~V~~V~~---gspA~~aG~L~   41 (88)
T 3e17_A            3 GVLLMKSRANEEYGLRLG----SQIFVKEMTR---TGLATKDGNLH   41 (88)
T ss_dssp             EEEEECBTTBCCCCEEEE----EEEEEEEECT---TSHHHHHCCCC
T ss_pred             EEEEEeCCCCCCCCEEEe----CCEEEEEECC---CCHHHHcCCCC
Confidence            344555555668999884    3699999996   79999999 74

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=84.36  E-value=0.72  Score=37.25  Aligned_cols=54  Identities=26%  Similarity=0.427  Sum_probs=39.0

Q ss_pred             EeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      .|.++.....|||.+....++-++|..|..   ++||.++||+        .|-.++  .+.|++|-
T Consensus        22 ~v~l~~~~~~lG~~~~~~~~~gv~V~~V~~---~spA~~aGL~--------~GD~Il--~vng~~v~   75 (117)
T 1uit_A           22 HVKVQKGSEPLGISIVSGEKGGIYVSKVTV---GSIAHQAGLE--------YGDQLL--EFNGINLR   75 (117)
T ss_dssp             EEEEECSSCCCCEEEEECTTSCEEEEEECT---TSHHHHHTCC--------TTCEEC--EETTEETT
T ss_pred             EEEEEeCCCCccEEEEccCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence            344445567899999887666799999996   7999999974        455443  66776653

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=84.17  E-value=0.68  Score=36.34  Aligned_cols=53  Identities=32%  Similarity=0.544  Sum_probs=37.3

Q ss_pred             EeeecCCCcceeeeeeec-------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          301 EIKLKEGDSKLGFAISRT-------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRT-------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      ++.++-+..-|||.|...       .+.=++|.+|..   ++||.++| |+        .|-.++  .+.|+.|
T Consensus         7 ~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v   67 (102)
T 2i1n_A            7 EIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIP---GGAAAMDGRLG--------VNDCVL--RVNEVDV   67 (102)
T ss_dssp             EEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred             EEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECC---CCHHHHCCCCC--------CCCEEE--EECCEEC
Confidence            455555677899999863       234689999996   79999999 73        454433  5666655

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=84.09  E-value=0.89  Score=34.81  Aligned_cols=53  Identities=13%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             EeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          301 EIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      ++.++ +...|||.|..-.  +.-++|.+|..   ++||.++||+        .|-.++  .+.|++|-
T Consensus         6 ~v~~~-~~~~~G~~l~gg~~~~~~v~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v~   60 (89)
T 2q3g_A            6 KVVLE-GPAPWGFRLQGGKDFNVPLSISRLTP---GGKAAQAGVA--------VGDWVL--SIDGENAG   60 (89)
T ss_dssp             EEEEE-SSSCCCEEEEEEGGGTEEEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEEGG
T ss_pred             EEEEc-CCCcccEEEECcCCCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence            33343 5688999996522  23488999985   7999999984        555544  67777664

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=84.04  E-value=0.9  Score=37.28  Aligned_cols=79  Identities=20%  Similarity=0.324  Sum_probs=49.6

Q ss_pred             Eeee-cCCCcceeeeeeec-------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceee
Q 011319          301 EIKL-KEGDSKLGFAISRT-------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIV  371 (488)
Q Consensus       301 Ei~~-~~gdtRlGfaIsRT-------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmV  371 (488)
                      ++.+ +.+...|||.|...       +++-+||.+|..   ++||.++| |        +.|-.++  .+.|++|.    
T Consensus        18 ~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~I~--~vng~~v~----   80 (129)
T 2dmz_A           18 NVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIP---GSAAYHNGHI--------QVNDKIV--AVDGVNIQ----   80 (129)
T ss_dssp             EEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECT---TSHHHHHTCC--------CSSCBEE--EETTBCCT----
T ss_pred             EEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCC---CCHHHHcCCC--------CCCCEEE--EECCEECC----
Confidence            4444 33577899999763       346799999996   79999999 7        3454443  56666552    


Q ss_pred             ecCCceeccCcccccccccccccccCceEEEEEEe
Q 011319          372 SSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLW  406 (488)
Q Consensus       372 sSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm~W  406 (488)
                             .+.+..+.+.|.   ....+|.|.|+--
T Consensus        81 -------~~~~~~~~~~l~---~~~~~v~l~v~R~  105 (129)
T 2dmz_A           81 -------GFANHDVVEVLR---NAGQVVHLTLVRR  105 (129)
T ss_dssp             -------TCCHHHHHHHHH---HCCSSEEEEEEEE
T ss_pred             -------CCCHHHHHHHHH---cCCCeEEEEEEeC
Confidence                   222233333332   3677888877643

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=83.91  E-value=1.2  Score=38.58  Aligned_cols=70  Identities=14%  Similarity=0.163  Sum_probs=45.9

Q ss_pred             cceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceeccCcccccc
Q 011319          309 SKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQ  387 (488)
Q Consensus       309 tRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~Dt~slsq  387 (488)
                      ..|||.+.+.+.| +||.+|..   +.||.++| |        +.|-.++  .|.|++|--           +++..+.+
T Consensus       125 ~~lG~~~~~~~~g-v~V~~V~~---gs~A~~aG~L--------~~GD~Il--~VNg~~v~~-----------~~~~~~~~  179 (206)
T 3r0h_A          125 KELGLSLSPNEIG-CTIADLIQ---GQYPEIDSKL--------QRGDIIT--KFNGDALEG-----------LPFQVCYA  179 (206)
T ss_dssp             CCCCEEEEECSSC-EEEEEECT---TSCHHHHHHC--------CTTCEEE--EETTEECTT-----------CCHHHHHH
T ss_pred             CccCeEEEcCCce-EEEEEECC---CChHHHcCCC--------CCCCEEE--EECCEECCC-----------CCHHHHHH
Confidence            5799999988777 78999995   79999999 6        4555443  467766542           22223333


Q ss_pred             cccccccccCceEEEEEEe
Q 011319          388 KLSLHRHAKVPILLHVFLW  406 (488)
Q Consensus       388 kLslhr~a~~pI~lHvm~W  406 (488)
                      .|   +....++.|.|.-.
T Consensus       180 ~l---~~~~~~v~L~V~R~  195 (206)
T 3r0h_A          180 LF---KGANGKVSMEVTRP  195 (206)
T ss_dssp             HH---HTCCSEEEEEEEEE
T ss_pred             HH---HcCCCeEEEEEEeC
Confidence            33   34556777766543

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=83.74  E-value=0.59  Score=37.69  Aligned_cols=40  Identities=23%  Similarity=0.319  Sum_probs=30.1

Q ss_pred             EeeecCCCcceeeeeeeccc---ceEEEEEeecCCCCCccchhh-HH
Q 011319          301 EIKLKEGDSKLGFAISRTEE---GFIYISTVIDDDENIPSTRSG-LS  343 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTEE---GFiyVsSV~~~~~g~~a~RsG-L~  343 (488)
                      ++.++.+...|||.|.-..+   ..++|++|..   +.||+++| |+
T Consensus         9 ~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~---~s~A~~aG~L~   52 (103)
T 1ufx_A            9 LVRVKKSAATLGIAIEGGANTRQPLPRIVTIQR---GGSAHNCGQLK   52 (103)
T ss_dssp             EEEEECCSSSCCEEEECBTTSSCSSCEEEEECT---TSHHHHHCSSC
T ss_pred             EEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCC---CChHHHCCCCC
Confidence            34445667889999986544   3469999996   79999999 73

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=83.68  E-value=0.94  Score=35.37  Aligned_cols=77  Identities=18%  Similarity=0.346  Sum_probs=47.3

Q ss_pred             EeeecCCC-cceeeeeee-------cc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeeccee
Q 011319          301 EIKLKEGD-SKLGFAISR-------TE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWI  370 (488)
Q Consensus       301 Ei~~~~gd-tRlGfaIsR-------TE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwm  370 (488)
                      +++++.++ ..|||.|..       ..  +..++|.+|..   ++||+++||+        .|-.++  .+.|++|--  
T Consensus         7 ~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v~~--   71 (96)
T 2ego_A            7 VLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHE---SSPAQLAGLT--------PGDTIA--SVNGLNVEG--   71 (96)
T ss_dssp             EEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECT---TCHHHHTTCC--------TTCEEE--EETTEECTT--
T ss_pred             EEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECC---CChHHHcCCC--------CCCEEE--EECCEECCC--
Confidence            44444444 589999975       11  24689999986   7999999984        455443  677776542  


Q ss_pred             eecCCceeccCcccccccccccccccCceEEEEE
Q 011319          371 VSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVF  404 (488)
Q Consensus       371 VsSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm  404 (488)
                               +++..+.+.|..+   ..+|.|.|+
T Consensus        72 ---------~~~~~~~~~l~~~---~~~v~l~v~   93 (96)
T 2ego_A           72 ---------IRHREIVDIIKAS---GNVLRLETL   93 (96)
T ss_dssp             ---------CCHHHHHHHHHHT---TTEEEEEEE
T ss_pred             ---------CCHHHHHHHHHhC---CCeEEEEEE
Confidence                     2234454555443   346666553

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=83.58  E-value=0.78  Score=36.34  Aligned_cols=48  Identities=21%  Similarity=0.390  Sum_probs=33.9

Q ss_pred             CCCcceeeeeee-----cccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          306 EGDSKLGFAISR-----TEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       306 ~gdtRlGfaIsR-----TEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .+...|||.|.-     ..+.=+||.+|..   ++||+++| |        +.|-.++  .+.|++|
T Consensus        18 ~~~~glG~~i~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~I~--~ing~~v   71 (106)
T 3axa_A           18 KKQNGMGLSIVAAKGAGQDKLGIYVKSVVK---GGAADVDGRL--------AAGDQLL--SVDGRSL   71 (106)
T ss_dssp             ECSSSCSEEEEEEECSSCSSEEEEEEEEBT---TSHHHHHCCC--------CTTCEEE--EETTEEC
T ss_pred             CCCCccCEEEEeecCCCCCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEEC
Confidence            356789999964     1334589999996   79999999 7        3454443  5677655

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=83.38  E-value=0.77  Score=35.56  Aligned_cols=33  Identities=27%  Similarity=0.500  Sum_probs=26.4

Q ss_pred             CCcceeeeeeecc-cceEEEEEeecCCCCCccchhh-H
Q 011319          307 GDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       307 gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      +...|||.|...+ .+-++|++|..   +.||+++| |
T Consensus        13 ~~~~lG~~i~~~~~~~~~~V~~v~~---gspA~~aG~L   47 (93)
T 3o46_A           13 NREPLGATIKKDEQTGAIIVARIMR---GGAADRSGLI   47 (93)
T ss_dssp             SSSCCCEEEEECTTTCCEEEEEECT---TSHHHHHTCC
T ss_pred             CCCCccEEEEecCCCCCEEEEEECC---CCHHHHcCCC
Confidence            3458999998753 35689999996   79999999 6

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=83.18  E-value=0.59  Score=35.99  Aligned_cols=54  Identities=22%  Similarity=0.338  Sum_probs=37.1

Q ss_pred             EeeecCCCcceeeeeeeccc-ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          301 EIKLKEGDSKLGFAISRTEE-GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTEE-GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      .+.++.+...|||.+....+ .-++|.+|..   ++||+++||        +.|-.+  =.+.|+.|.
T Consensus         8 ~v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~---~spA~~aGl--------~~GD~I--~~ing~~v~   62 (95)
T 3r68_A            8 VVVIKKGSNGYGFYLRAGPEQKGQIIKDIEP---GSPAEAAGL--------KNNDLV--VAVNGKSVE   62 (95)
T ss_dssp             EEEEECBTTBCSCEEEEC--CCSEEEECCCT---TSHHHHHTC--------CTTEEE--EEETTEECT
T ss_pred             EEEEecCCCcccEEEEecCCCCCEEEEEECC---CCHHHHCCC--------CCCCEE--EEECCEECC
Confidence            35555567789999976544 2688999985   799999998        345443  346777654

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=83.07  E-value=1.3  Score=37.14  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=25.8

Q ss_pred             CCcceeeeeee---cc--cceEEEEEeecCCCCCccchhh-H
Q 011319          307 GDSKLGFAISR---TE--EGFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       307 gdtRlGfaIsR---TE--EGFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      ....|||.|..   .+  +..+||.+|..   +.||+++| |
T Consensus        46 ~~~~lG~~i~gg~~~~~~~~gv~V~~V~~---gspA~~aG~L   84 (131)
T 1wfg_A           46 SGAMLGLKVVGGKMTESGRLCAFITKVKK---GSLADTVGHL   84 (131)
T ss_dssp             SCTTTTEEEEEEEECSSSCEEEEEEEECT---TSHHHHTSCC
T ss_pred             CCCCCCEEEecCccCCCCCCCEEEEEECC---CChHHHcCCC
Confidence            46689999954   22  23799999996   79999999 7

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=82.96  E-value=0.66  Score=38.67  Aligned_cols=51  Identities=18%  Similarity=0.413  Sum_probs=37.0

Q ss_pred             CCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecce
Q 011319          306 EGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPW  369 (488)
Q Consensus       306 ~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPw  369 (488)
                      .....|||.+....++=++|.+|..   ++||.++||        +.|-.++  .|.|++|--|
T Consensus        36 ~~~~~lG~~l~~~~~~gv~V~~V~~---gspA~~aGL--------~~GD~Il--~Vng~~v~~~   86 (124)
T 3tsv_A           36 RKGDSVGLRLAGGNDVGIFVAGVLE---DSPAAKEGL--------EEGDQIL--RVNNVDFTNI   86 (124)
T ss_dssp             ECSSCCCEEEEECTTSCEEEEEECT---TCHHHHTTC--------CTTEEEE--EETTEECSSC
T ss_pred             CCCCceeEEEecCCCCCEEEEEECC---CCHHHHcCC--------CCCCEEE--EECCEECCCC
Confidence            3346899999874455589999996   799999998        3455443  6778776543

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=82.93  E-value=0.5  Score=36.77  Aligned_cols=82  Identities=17%  Similarity=0.284  Sum_probs=54.2

Q ss_pred             cceeeeEeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeee
Q 011319          295 GGELAIEIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVS  372 (488)
Q Consensus       295 ~~E~~lEi~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVs  372 (488)
                      .|++.+.+..+ +...|||.|..-.  +.-++|.+|..   ++||.++||        +.|-.++  .+.|++|--    
T Consensus         3 sg~~~~~~~~~-~~~~lG~~l~~g~~~~~g~~V~~V~~---~spA~~aGL--------~~GD~I~--~ing~~v~~----   64 (94)
T 1vb7_A            3 SGSSGLTVDVA-GPAPWGFRISGGRDFHTPIIVTKVTE---RGKAEAADL--------RPGDIIV--AINGQSAEN----   64 (94)
T ss_dssp             CCCCCEEEEEC-SSSCCSBCCEEETTTTEEEECCCBCT---TSSHHHHTC--------CTTCEEE--EETTEECTT----
T ss_pred             CccEEEEEEec-CCCCccEEEecccCCCCCeEEEEECC---CCHHHHCCC--------CCCCEEE--EECCEECCC----
Confidence            47788888887 4679999997522  23478999985   799999998        4465544  788887643    


Q ss_pred             cCCceeccCcccccccccccccccCceEEEEE
Q 011319          373 STGAVRCFDTVSLSQKLSLHRHAKVPILLHVF  404 (488)
Q Consensus       373 SsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm  404 (488)
                             +.+..+.+.|..+   ..+|.|.|.
T Consensus        65 -------~~~~~~~~~l~~~---~~~v~l~v~   86 (94)
T 1vb7_A           65 -------MLHAEAQSKIRQS---ASPLRLQLD   86 (94)
T ss_dssp             -------CCHHHHHHHHHTC---CSSEEEEEE
T ss_pred             -------CCHHHHHHHHHhC---CCcEEEEEE
Confidence                   2223344444333   267777664

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=82.81  E-value=1.5  Score=34.68  Aligned_cols=54  Identities=20%  Similarity=0.390  Sum_probs=36.1

Q ss_pred             eeEeeecCCCcceeeeeeecccc----eEEEEEeecCCCCCccch-hhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319          299 AIEIKLKEGDSKLGFAISRTEEG----FIYISTVIDDDENIPSTR-SGLSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTEEG----FiyVsSV~~~~~g~~a~R-sGL~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .++|....| ..|||.|.-...|    -++|.+|..   ++||++ +||+        .|-.++  .+.|++|
T Consensus        12 ~v~l~k~~g-~~lG~~i~~~~~~~~~~~~~V~~V~~---~spA~~~ggl~--------~GD~I~--~Ing~~v   70 (101)
T 2yt7_A           12 EVHLEKRRG-EGLGVALVESGWGSLLPTAVIANLLH---GGPAERSGALS--------IGDRLT--AINGTSL   70 (101)
T ss_dssp             EEEEECCTT-CCCCEEEEECCCSSSSCCEEEEEECT---TSTTGGGSSCC--------TTCEEE--EESSCBC
T ss_pred             EEEEEeCCC-CccCEEEEeCCCCCCccCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEEC
Confidence            345555555 4799999754444    589999996   799999 4573        444433  4667665

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=82.76  E-value=0.94  Score=36.10  Aligned_cols=54  Identities=24%  Similarity=0.455  Sum_probs=36.6

Q ss_pred             eEeeecCCCcceeeeeeec-----ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          300 IEIKLKEGDSKLGFAISRT-----EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT-----EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      +++.++.+..-|||.|...     .+.-++|.+|..   +.||+++| |+        .|-.++  .|.|++|
T Consensus        10 ~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v   69 (110)
T 1um1_A           10 FTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLP---GSPAAADGRLS--------LGDRIL--EVNGSSL   69 (110)
T ss_dssp             EEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECT---TSHHHHHSCCC--------TTCEEE--EESSCBC
T ss_pred             EEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECC---CChHHHcCCCC--------CCCEEE--EECCEEC
Confidence            3444445556899999763     233589999986   79999999 73        455443  5677655

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=82.61  E-value=0.36  Score=36.54  Aligned_cols=53  Identities=23%  Similarity=0.385  Sum_probs=38.0

Q ss_pred             eEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          300 IEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      -++.++-+...|||.+.. ..| ++|.+|..   ++||+++||+        .|-.++  .+.|++|.
T Consensus         4 r~v~l~~~~~g~G~~~~~-~~~-~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v~   56 (83)
T 2kv8_A            4 RSVEVARGRAGYGFTLSG-QAP-CVLSCVMR---GSPADFVGLR--------AGDQIL--AVNEINVK   56 (83)
T ss_dssp             EEEEECCCSSCCSCBCCC-SSS-CBCCBCCT---TSTTTTTTCC--------TTCEEE--EETTEECS
T ss_pred             EEEEEEeCCCcccEEEEc-CCC-eEEEEeCC---CChHHHcCCC--------CCCEEE--EECCEECC
Confidence            356667777889998865 345 78899885   7899999974        455443  57777664

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=82.34  E-value=0.8  Score=35.16  Aligned_cols=56  Identities=20%  Similarity=0.363  Sum_probs=39.0

Q ss_pred             eeeeEeeecCCCcceeeeeeec-ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          297 ELAIEIKLKEGDSKLGFAISRT-EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       297 E~~lEi~~~~gdtRlGfaIsRT-EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .+.++|...+ ...|||.|.-- ++.-++|.+|..   ++||+++| |        +.|-.++  .+.|++|
T Consensus         5 ~~~v~l~k~~-~~~lG~~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~I~--~vng~~v   62 (92)
T 2qg1_A            5 TLTIGLQKKP-GKGLGLSIVGKRNDTGVFVSDIVK---GGIADADGRL--------MQGDQIL--MVNGEDV   62 (92)
T ss_dssp             EEEEEEECCT-TSCCSEEEECCSSSCSCEEEEECT---TSHHHHHTCC--------CTTCEEE--EETTEEC
T ss_pred             EEEEEEEeCC-CCcccEEEEeccCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEEC
Confidence            4555555444 46799999754 345689999996   79999999 7        3455544  5777766

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=82.05  E-value=0.95  Score=36.60  Aligned_cols=62  Identities=16%  Similarity=0.369  Sum_probs=38.6

Q ss_pred             eccccceeeeEeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          291 YAPVGGELAIEIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       291 y~P~~~E~~lEi~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      |.+......|+|  +.+...|||.|....  +.-++|.+|..   ++||.++| |        +.|-.++  .|.|++|.
T Consensus        19 ~~~~~~~~~v~l--~~~~~glG~~l~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~Il--~Vng~~v~   83 (112)
T 2r4h_A           19 YFQSMDFYTVEL--ERGAKGFGFSLRGGREYNMDLYVLRLAE---DGPAERSGKM--------RIGDEIL--EINGETTK   83 (112)
T ss_dssp             ----CCEEEEEE--ECBTTBTSEEEEECGGGTCCEEEEEECT---TSHHHHTTCC--------CTTCEEE--EETTEECT
T ss_pred             ccCCCceEEEEE--EcCCCccCEEEeccccCCCCEEEEEECC---CChHHHcCCC--------CCCCEEE--EECCEECC
Confidence            444444444444  444567999997543  33579999996   78999999 7        3455443  57777764

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=81.93  E-value=0.73  Score=35.27  Aligned_cols=54  Identities=15%  Similarity=0.350  Sum_probs=36.8

Q ss_pred             EeeecCCCcceeeeeeec------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          301 EIKLKEGDSKLGFAISRT------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRT------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      ++.++.+...|||.|...      .++-++|.+|..   ++||.++| |+        .|-.++  .+.|++|-
T Consensus         7 ~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~---~s~A~~aG~l~--------~GD~I~--~vng~~v~   67 (97)
T 2iwn_A            7 DVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITK---SSAVEHDGRIQ--------IGDQII--AVDGTNLQ   67 (97)
T ss_dssp             EEEEECBTTBSCEEEECCCCC----CCCCEEEEECT---TCHHHHHCCCC--------TTCEEE--EETTEECT
T ss_pred             EEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCC---CChHHhCCCCC--------CCCEEE--EECCEECC
Confidence            344455567799999876      245688999986   68999999 73        344433  56776653

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.76  E-value=0.75  Score=35.29  Aligned_cols=53  Identities=34%  Similarity=0.452  Sum_probs=36.8

Q ss_pred             eeecCCCcceeeeeeec--ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          302 IKLKEGDSKLGFAISRT--EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       302 i~~~~gdtRlGfaIsRT--EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      +.++.+...|||.|..-  .++-++|.+|..   ++||+++| |+        .|-.++  .+.|++|-
T Consensus         9 v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~---~spA~~aGgl~--------~GD~I~--~vng~~v~   64 (93)
T 2dkr_A            9 VELPKTDEGLGFNIMGGKEQNSPIYISRVIP---GGVADRHGGLK--------RGDQLL--SVNGVSVE   64 (93)
T ss_dssp             EEEECCTTCCCEEEECSSSSSCCCEEEEECT---TSHHHHHCCCC--------TTCBEE--EETTEECT
T ss_pred             EEEEeCCCCccEEEecccCCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEECC
Confidence            44445678899999752  245689999996   68999995 74        454433  46777664

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=81.65  E-value=1.1  Score=36.56  Aligned_cols=45  Identities=18%  Similarity=0.247  Sum_probs=31.9

Q ss_pred             cceeeeeeecccc-------eEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          309 SKLGFAISRTEEG-------FIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       309 tRlGfaIsRTEEG-------FiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      ..|||.|.-..+-       -+||++|..   +.||+++| |+        .|-.++  .|.|+.|
T Consensus        30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~---~s~A~~aG~L~--------~GD~Il--~vng~~v   82 (117)
T 1ujd_A           30 NGLGIRIVGGKEIPGHSGEIGAYIAKILP---GGSAEQTGKLM--------EGMQVL--EWNGIPL   82 (117)
T ss_dssp             CSCSEEEEEEEECSSSSSCEEEEEEEECT---TCHHHHHSSCC--------TTCEEE--EETTEEC
T ss_pred             CcccEEEeCCCCCCcccCCcCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEEc
Confidence            6899999755431       389999996   79999999 73        444333  5566655

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.25  E-value=1  Score=36.63  Aligned_cols=53  Identities=32%  Similarity=0.503  Sum_probs=36.7

Q ss_pred             EeeecCCCcceeeeeeecc-------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          301 EIKLKEGDSKLGFAISRTE-------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTE-------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      +|.++-+...|||.|....       +.-+||.+|..   +.||+++| |        +.|-.++  .|.|++|
T Consensus        20 ~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~Il--~vng~~v   80 (120)
T 2eno_A           20 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKE---NGAAALDGRL--------QEGDKIL--SVNGQDL   80 (120)
T ss_dssp             EEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECS---SSHHHHSCCS--------CTTCEEE--EETTEEC
T ss_pred             EEEEEECCCCCCEEEecccCCccccCCCCEEEEEECC---CChHHHCCCC--------CCCCEEE--EECCEEC
Confidence            3444455589999998632       34589999996   79999999 7        3455443  4666655

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=81.21  E-value=1.1  Score=35.68  Aligned_cols=54  Identities=22%  Similarity=0.426  Sum_probs=38.3

Q ss_pred             eEeeecCCCcceeeeeeec--------ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319          300 IEIKLKEGDSKLGFAISRT--------EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT--------EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      +.+.++.+...|||.|...        ++.-++|.+|..   ++||.++||        +.|-.++  .+.|++|
T Consensus        17 ~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~---~spA~~aGL--------~~GD~I~--~ing~~v   78 (110)
T 1x5q_A           17 LTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSE---EGPAARAGV--------RVGDKLL--EVNGVAL   78 (110)
T ss_dssp             EEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECT---TSHHHHHTC--------CTTCEEE--EETTEEC
T ss_pred             EEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECC---CCHHHHcCC--------CCCCEEE--EECCEEC
Confidence            4455555678899999732        345689999996   799999998        4455443  6677665

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=81.12  E-value=1  Score=35.39  Aligned_cols=54  Identities=22%  Similarity=0.356  Sum_probs=39.0

Q ss_pred             eEeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319          300 IEIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      -.+.++.+...|||.|...+ ++-++|.+|..   ++||+++||+        .|-.++  .+.|++|
T Consensus         8 r~v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v   62 (102)
T 2d90_A            8 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEP---GSPAEAAGLK--------NNDLVV--AVNGKSV   62 (102)
T ss_dssp             EEEEEECCSSSSSCEEEECSSSSSEEEECCCT---TSTTTTTTCC--------TTCEEE--EESSCBC
T ss_pred             EEEEEeeCCCCccEEEEeecCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEEC
Confidence            34566667778999998743 34588999985   7999999984        455443  6677765

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=81.11  E-value=0.67  Score=36.63  Aligned_cols=55  Identities=11%  Similarity=0.225  Sum_probs=37.3

Q ss_pred             eeeeEeeecCCCcceeeeeeec-c-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          297 ELAIEIKLKEGDSKLGFAISRT-E-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       297 E~~lEi~~~~gdtRlGfaIsRT-E-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      ++.|+|.   +...|||.|.-- + +.-++|.+|..   ++||.++||+        .|-.++  .+.|++|-
T Consensus         6 ~~~v~l~---~~~~~G~~l~gg~~~~~~v~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v~   62 (103)
T 1wf7_A            6 SGSVSLV---GPAPWGFRLQGGKDFNMPLTISSLKD---GGKASQAHVR--------IGDVVL--SIDGISAQ   62 (103)
T ss_dssp             CEEEEEE---SSSCCSCCEEEETTTTEEEEECCCCT---TCHHHHTTCC--------TTCBEE--EETTEECS
T ss_pred             EEEEEEe---CCCccCEEEeccccCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence            4455554   678899999742 2 22389999985   7999999984        454443  56777653

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=81.10  E-value=1.4  Score=34.30  Aligned_cols=40  Identities=23%  Similarity=0.545  Sum_probs=29.2

Q ss_pred             eEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhh-H
Q 011319          300 IEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      +.+.++.+...|||.|..-.+  .-++|.+|..   ++||.++| |
T Consensus        13 ~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~---~spA~~aG~l   55 (103)
T 1wfv_A           13 FTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAE---DGPAIRNGRM   55 (103)
T ss_dssp             EECCEECCTTSSSBCCEEETTTTEEEECCCBCT---TSHHHHHCSS
T ss_pred             EEEEEecCCCcCCEEEeccccCCCCEEEEEECC---CChHHHcCCC
Confidence            445555555679999985443  3588999986   69999999 6

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=80.95  E-value=1.2  Score=34.57  Aligned_cols=53  Identities=23%  Similarity=0.434  Sum_probs=37.2

Q ss_pred             EeeecCCCcceeeeeeecc----cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319          301 EIKLKEGDSKLGFAISRTE----EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTE----EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .+.++.+...|||.+....    +.-++|.+|..   ++||.++||        +.|-.++  .+.|++|
T Consensus         6 ~v~l~k~~~~~G~~l~~~~~~~~~~g~~V~~V~~---~spA~~aGl--------~~GD~I~--~ing~~v   62 (96)
T 2v90_A            6 CLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDP---GLPAKKAGM--------QAGDRLV--AVAGESV   62 (96)
T ss_dssp             EEEEECBTTBSCEEEEEEECTTSCEEEEEEEECT---TSHHHHTTC--------CTTEEEE--EETTEEC
T ss_pred             EEEEEeCCCcccEEEEeccCCCCCCCeEEEEECC---CChHHHcCC--------CCCCEEE--EECCEEC
Confidence            3455556668999997643    22589999985   799999998        3455443  6777766

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=80.94  E-value=1.5  Score=35.94  Aligned_cols=53  Identities=19%  Similarity=0.392  Sum_probs=37.2

Q ss_pred             EeeecCCCcceeeeeeeccc---ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          301 EIKLKEGDSKLGFAISRTEE---GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTEE---GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      ++.++-+..-|||.|....+   .-++|.+|..   +.||.++| |        +.|-.++  .|.|++|
T Consensus        28 ~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~Il--~Ing~~v   84 (124)
T 2daz_A           28 IIELEKDKNGLGLSLAGNKDRSRMSIFVVGINP---EGPAAADGRM--------RIGDELL--EINNQIL   84 (124)
T ss_dssp             EEEEECCSSCCCEEEECBSSTTSCCEEEEEECT---TSHHHHHTCC--------CTTCEEC--EESSCBC
T ss_pred             EEEEEeCCCccCEEEeccCCCCcCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEEC
Confidence            45555667789999976532   3589999996   79999999 7        3454433  4666655

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=80.59  E-value=1.4  Score=35.85  Aligned_cols=55  Identities=25%  Similarity=0.350  Sum_probs=39.5

Q ss_pred             eeEeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319          299 AIEIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      +-.+.++.+...|||.|.... ++-++|.+|..   ++||+++||        +.|-.++  .+.|++|
T Consensus        10 ~r~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~---~spA~~aGl--------~~GD~I~--~ing~~v   65 (128)
T 2kjd_A           10 PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDP---DSPAEASGL--------RAQDRIV--EVNGVCM   65 (128)
T ss_dssp             CEEEEEECCSSSCCEEEEECSSSCSEEEEEECT---TSHHHHHTC--------CTTCEEE--EETTEEC
T ss_pred             cEEEEEecCCCcccEEEEecCCCCCEEEEEeCC---CChHHHcCC--------CCCCEEE--EECCEEC
Confidence            334556666778999997654 35799999996   799999998        3555443  5677665

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=80.51  E-value=0.9  Score=38.85  Aligned_cols=54  Identities=26%  Similarity=0.484  Sum_probs=39.1

Q ss_pred             eeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319          299 AIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      .+++.+.-+...|||.|... ...++|.+|.+   +.||+++| |+        .|-.++  .|.|++|
T Consensus        28 ~~~~~l~k~~~glG~~i~~~-~~~v~V~~V~~---gspA~~aG~L~--------~GD~Il--~VnG~~v   82 (126)
T 1wif_A           28 VIQTKLTVGNLGLGLVVIQN-GPYLQISHLIN---KGAAASDGILQ--------PGDVLI--SVGHANV   82 (126)
T ss_dssp             EEEEEEECCTTCCCCCEEEE-TTEEEECCCCT---TSSGGGCSSSC--------TTCBEE--EESSSCC
T ss_pred             eEEEEEecCCceEeEEEEcC-CCcEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEEc
Confidence            45667777888999998654 45689999996   79999999 63        454433  5566554

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=80.31  E-value=1.3  Score=36.87  Aligned_cols=41  Identities=17%  Similarity=0.305  Sum_probs=30.1

Q ss_pred             eEeeecCCCcceeeeeeeccc-----ceEEEEEeecCCCCCccchh-hHH
Q 011319          300 IEIKLKEGDSKLGFAISRTEE-----GFIYISTVIDDDENIPSTRS-GLS  343 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTEE-----GFiyVsSV~~~~~g~~a~Rs-GL~  343 (488)
                      .++.+.-+..-|||.|..-.+     .-|||.+|..   +.||+++ ||+
T Consensus        31 ~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~---gs~A~~aggL~   77 (130)
T 1i16_A           31 CTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFK---GAASEQSETVQ   77 (130)
T ss_dssp             EEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECS---SCCCSSSCCCC
T ss_pred             EEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECC---CCHHHHcCCCC
Confidence            344455556789999985433     3599999996   7999999 874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	93.33
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	93.12
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	92.92
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	92.47
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	92.2
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	92.06
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	92.03
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	91.93
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	91.89
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	91.38
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	91.28
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	91.19
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	91.0
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	90.99
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	90.95
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	90.94
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	90.71
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	90.69
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	90.15
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	90.02
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	89.45
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	89.08
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	88.98
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	88.84
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	88.49
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	87.48
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	87.25
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	86.98
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	86.64
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	85.59
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	85.49
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	85.16
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	84.79
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	83.85
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	83.68
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	83.27
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	82.24
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	81.74
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	81.16
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	80.46
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	80.34

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.024  Score=43.02  Aligned_cols=49  Identities=20%  Similarity=0.433  Sum_probs=35.3

Q ss_pred             cCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          305 KEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       305 ~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      +..+..|||.|..-+ +-+||.+|..   ++||+++||+        .|..++  .+.|++|-
T Consensus        10 k~~~~~lG~~l~~~~-~g~~V~~v~~---gspA~~aGL~--------~GD~Il--~Vng~~v~   58 (85)
T d1w9ea1          10 KDQDGKIGLRLKSID-NGIFVQLVQA---NSPASLVGLR--------FGDQVL--QINGENCA   58 (85)
T ss_dssp             CCTTSCCSEEEEEET-TEEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEECT
T ss_pred             eCCCCCEeEEEEeCC-CCEEEEEECC---CCHHHHcCCC--------CccEEE--EECCEEeC
Confidence            345678999998655 4589999996   7999999973        344333  56666664

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.12  E-value=0.028  Score=43.45  Aligned_cols=39  Identities=26%  Similarity=0.518  Sum_probs=29.1

Q ss_pred             eEeeecCCCcceeeeeeec----------ccceEEEEEeecCCCCCccchhh
Q 011319          300 IEIKLKEGDSKLGFAISRT----------EEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT----------EEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      .++.++-++.-|||.|.-.          .++-|||++|..   +.||+|+|
T Consensus         6 ~~V~L~k~~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~---gg~A~~~G   54 (99)
T d1ozia_           6 FEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIP---KGAAESDG   54 (99)
T ss_dssp             EEEEEECCSSSCSEEEESCCSSSCSSCSSSCCCEEEEEECS---SSHHHHHT
T ss_pred             EEEEEEECCCCCcEEEEeeccCCCcccccCCCCEEEEEECC---CChHHhcC
Confidence            3444545566799999743          345699999996   79999999

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.92  E-value=0.033  Score=43.86  Aligned_cols=71  Identities=14%  Similarity=0.238  Sum_probs=43.5

Q ss_pred             CCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceeccCccccc
Q 011319          307 GDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLS  386 (488)
Q Consensus       307 gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~Dt~sls  386 (488)
                      ....|||.|. .+.+.|||++|..   +.||+|+|.-       +.|-.++  .|.|+.|.-              .+..
T Consensus        28 ~~~~lG~~v~-~~~~~i~I~~V~~---gs~A~~~g~l-------~~GD~Il--~VNg~~v~~--------------~~~~   80 (100)
T d1va8a1          28 RDIPLGATVR-NEMDSVIISRIVK---GGAAEKSGLL-------HEGDEVL--EINGIEIRG--------------KDVN   80 (100)
T ss_dssp             TTCCCCEEEE-ECSSSEEEEEECT---TSHHHHHTCC-------CTTCEEE--EETTEECTT--------------CCHH
T ss_pred             CCCCccEEEE-ecCCCEEEEEECC---CChhhhhccc-------CccCEEE--EECCEEEcC--------------CCHH
Confidence            3567999995 5556689999996   6999999822       2233222  345554432              2334


Q ss_pred             ccccccccccCceEEEEE
Q 011319          387 QKLSLHRHAKVPILLHVF  404 (488)
Q Consensus       387 qkLslhr~a~~pI~lHvm  404 (488)
                      +-..+-|.+..++.|.|+
T Consensus        81 ~~~~ll~~~~~~v~L~v~   98 (100)
T d1va8a1          81 EVFDLLSDMHGTLTFVLI   98 (100)
T ss_dssp             HHHHHHHHCCEEEEEEEE
T ss_pred             HHHHHHHcCCCeEEEEEE
Confidence            445555556666666654

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.031  Score=43.05  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=28.4

Q ss_pred             EeeecCCCcceeeeeee--------cccceEEEEEeecCCCCCccchhh
Q 011319          301 EIKLKEGDSKLGFAISR--------TEEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsR--------TEEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      ++.++-+..-|||.|.-        .++.-|||++|..   +.||+|+|
T Consensus         5 ~V~L~k~~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~---gg~A~~~G   50 (94)
T d1wf8a1           5 PVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTE---GGAAQRDG   50 (94)
T ss_dssp             EEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECT---TCHHHHHC
T ss_pred             EEEEEeCCCCcCEEEEeccCCCCCCcCCCCEEEEEECC---CChHHHcC
Confidence            44555555679999953        3445699999996   79999998

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.029  Score=44.12  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=28.5

Q ss_pred             EeeecCCCcceeeeeee--cccceEEEEEeecCCCCCccchhh
Q 011319          301 EIKLKEGDSKLGFAISR--TEEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsR--TEEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      +|.++-++..|||.|.-  ...+.|||..|.+   +.||+|+|
T Consensus        12 ~V~l~k~~~glG~~i~gg~~~~~~i~V~~v~~---g~~A~~~G   51 (103)
T d1uepa_          12 DVHLRRMESGFGFRILGGDEPGQPILIGAVIA---MGSADRDG   51 (103)
T ss_dssp             CCEEESSSSSCCEEECCCCSTTSCCBEEEECT---TSTTGGGT
T ss_pred             EEEEEeCCceEeEEEEecccCCCcEEEEEECC---CChHHHcC
Confidence            44444456679999973  2346799999996   79999998

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.15  Score=41.26  Aligned_cols=43  Identities=26%  Similarity=0.577  Sum_probs=32.4

Q ss_pred             cceeeeEeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhh
Q 011319          295 GGELAIEIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       295 ~~E~~lEi~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      .+|+ +++.++-++.-|||.|....  .+.|||.+|.+   +.||+|+|
T Consensus        17 ~~~~-~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~---gg~A~~~g   61 (123)
T d1ueqa_          17 KGTF-LSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIP---DGPAAQDG   61 (123)
T ss_dssp             CSEE-EEEEEECCTTSCSEEEECCSSSSCCCEEEEECT---TSHHHHTS
T ss_pred             CCeE-EEEEEEECCCeeCEEEEeecCCCCCEEEEEECC---CCHHHHcC
Confidence            3555 45666555677999997633  46799999996   79999998

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.03  E-value=0.072  Score=41.02  Aligned_cols=49  Identities=20%  Similarity=0.356  Sum_probs=34.6

Q ss_pred             ccccce-eeeEeeecCCCcceeeeeee-cccceEEEEEeecCCCCCccchhhHH
Q 011319          292 APVGGE-LAIEIKLKEGDSKLGFAISR-TEEGFIYISTVIDDDENIPSTRSGLS  343 (488)
Q Consensus       292 ~P~~~E-~~lEi~~~~gdtRlGfaIsR-TEEGFiyVsSV~~~~~g~~a~RsGL~  343 (488)
                      +|.-.| -.++|.-..+...|||.|.. .++.=+||.+|..   +.||+++||+
T Consensus         1 sP~p~e~~~v~l~k~~~~~~~Gf~i~~~~~~~g~~V~~V~~---~g~A~~~gL~   51 (91)
T d1m5za_           1 SPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRP---AGPGDLGGLK   51 (91)
T ss_dssp             CCSCCEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECT---TSHHHHHTCC
T ss_pred             CcCCCceEEEEEEECCCCCceeEEEeccCCCCCEEEEEECC---CChhHhCcCC
Confidence            355555 34556666666789999974 3233489999996   6899999974

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.027  Score=46.13  Aligned_cols=49  Identities=33%  Similarity=0.451  Sum_probs=36.6

Q ss_pred             eccccceeeeEeeecCCCcceeeeeeeccc-c-eEEEEEeecCCCCCccchhhHH
Q 011319          291 YAPVGGELAIEIKLKEGDSKLGFAISRTEE-G-FIYISTVIDDDENIPSTRSGLS  343 (488)
Q Consensus       291 y~P~~~E~~lEi~~~~gdtRlGfaIsRTEE-G-FiyVsSV~~~~~g~~a~RsGL~  343 (488)
                      +.....|-.++|..++++ .|||.|.--.| + -|||++|.+   +.||+|+||+
T Consensus        15 ~~~~~~~~~v~l~~~~~~-~lGf~i~gg~~~~~gv~V~~V~~---g~~A~~~gL~   65 (128)
T d1uf1a_          15 LLQGGDEKKVNLVLGDGR-SLGLTIRGGAEYGLGIYITGVDP---GSEAEGSGLK   65 (128)
T ss_dssp             CCCCSSEEEEEEECCSSC-CCCEEEECCTTTTCCCEEEEECT---TCHHHHHTCC
T ss_pred             ecCCCCeEEEEEEECCCC-ccCEEEEeeccCCCCEEEEEECC---CChHHhcCCC
Confidence            444566778888887754 69999985222 2 489999986   7999999974

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.055  Score=41.36  Aligned_cols=78  Identities=13%  Similarity=0.250  Sum_probs=51.5

Q ss_pred             eeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceeeecCCce
Q 011319          299 AIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAV  377 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaI  377 (488)
                      .|+|.-.+ +..|||.|...+++=|||+.|..   |.||+|+| |+        .|-.++  .|.|+.|           
T Consensus         4 ~V~l~k~~-~~~lG~~l~~~~~~~~~I~~v~~---gg~A~~~g~l~--------~GD~Il--~INg~~v-----------   58 (88)
T d1kwaa_           4 LVQFQKNT-DEPMGITLKMNELNHCIVARIMH---GGMIHRQGTLH--------VGDEIR--EINGISV-----------   58 (88)
T ss_dssp             EEEEEECS-SSCCCEEEECSCGGGEEEEEECT---TSHHHHHTCCC--------TTCEEE--EETTEEG-----------
T ss_pred             EEEEEeCC-CCCccEEEEEcCCCCEEEEEECC---CCHHHHcCCCc--------cCcEEE--EECCEEC-----------
Confidence            36677666 45999999988888899999996   79999998 42        232222  2344433           


Q ss_pred             eccCcccccccccccccccCceEEEEE
Q 011319          378 RCFDTVSLSQKLSLHRHAKVPILLHVF  404 (488)
Q Consensus       378 rC~Dt~slsqkLslhr~a~~pI~lHvm  404 (488)
                         ...++.+-+.+-+++...+.|.++
T Consensus        59 ---~~~~~~~~~~ll~~~~~~v~L~i~   82 (88)
T d1kwaa_          59 ---ANQTVEQLQKMLREMRGSITFKIV   82 (88)
T ss_dssp             ---GGSCHHHHHHHHHHCCEEEEEEEE
T ss_pred             ---CCCCHHHHHHHHHcCCCcEEEEEE
Confidence               223344445555666667777765

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.045  Score=43.87  Aligned_cols=39  Identities=33%  Similarity=0.560  Sum_probs=31.0

Q ss_pred             eeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHH
Q 011319          302 IKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLS  343 (488)
Q Consensus       302 i~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~  343 (488)
                      +.++.+..-|||.|.--+++-|||++|.+   +.||.++||+
T Consensus        23 v~l~k~~~glG~~i~gg~~~gi~V~~V~~---gs~A~~~gL~   61 (117)
T d1uita_          23 VKVQKGSEPLGISIVSGEKGGIYVSKVTV---GSIAHQAGLE   61 (117)
T ss_dssp             EEEECSSCCCCEEEEECTTSCEEEEEECT---TSHHHHHTCC
T ss_pred             EEEEeCCCccCEEEEccCCCCEEEEEEec---CChHHhCCCC
Confidence            34444566799999887888899999997   6799999874

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.28  E-value=0.072  Score=41.01  Aligned_cols=38  Identities=16%  Similarity=0.352  Sum_probs=28.4

Q ss_pred             eEeeecCCCcceeeeeeec--ccceEEEEEeecCCCCCccchhh
Q 011319          300 IEIKLKEGDSKLGFAISRT--EEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT--EEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      |+|.-+++ ..|||.|.-.  .+..|||+.|..   +.||+|+|
T Consensus         8 V~l~k~~~-~~lG~~i~gg~~~~~~i~V~~V~~---~~~A~~~G   47 (90)
T d1qava_           8 VTVRKADA-GGLGISIKGGRENKMPILISKIFK---GLAADQTE   47 (90)
T ss_dssp             EEEECCTT-TCCCEEEEEEGGGTEEEEEEEECT---TSHHHHTT
T ss_pred             EEEEeCCC-CccCEEEEccccCCCCEEEEEEcC---CCceeeCC
Confidence            45544443 4799999853  345799999996   79999999

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.19  E-value=0.046  Score=42.70  Aligned_cols=39  Identities=21%  Similarity=0.355  Sum_probs=29.6

Q ss_pred             eEeeecCCCcceeeeeeec-ccceEEEEEeecCCCCCccchhh-H
Q 011319          300 IEIKLKEGDSKLGFAISRT-EEGFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT-EEGFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      ++|.-.+ ...|||.|.-. +++.|||++|..   +.||+|+| |
T Consensus         5 V~l~k~~-~~glG~~i~~~~~~~~i~I~~v~~---ggpA~~~G~L   45 (112)
T d1qaua_           5 VRLFKRK-VGGLGFLVKERVSKPPVIISDLIR---GGAAEQSGLI   45 (112)
T ss_dssp             EEEECBT-TTBTSEEEEECSSSSCEEEEEECT---TSHHHHHTCC
T ss_pred             EEEEECC-CCcEeEEEEeecCCCCEEEEEEcC---CCHHHHhhhc
Confidence            4444333 45799999854 456799999996   79999999 6

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.00  E-value=0.038  Score=42.27  Aligned_cols=39  Identities=36%  Similarity=0.663  Sum_probs=29.8

Q ss_pred             EeeecCCCcceeeeeee-------cccceEEEEEeecCCCCCccchhh-H
Q 011319          301 EIKLKEGDSKLGFAISR-------TEEGFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsR-------TEEGFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      |+.++-+..-|||.|.-       ..+.-|||++|..   +.||+|+| |
T Consensus         4 ~V~l~k~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~---gg~A~~~G~L   50 (93)
T d1rgra_           4 EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIP---GGAAAQDGRL   50 (93)
T ss_dssp             EEEEECCSSCCSEEECCCSSSCSCTTCCCCCEEEECT---TSHHHHHCCC
T ss_pred             EEEEEeCCCcCCEEEEeecCCCCcCCCCCEEEEEECC---CChHHhcCCC
Confidence            55666666779999962       2345689999996   79999999 5

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.99  E-value=0.049  Score=42.22  Aligned_cols=38  Identities=37%  Similarity=0.450  Sum_probs=29.6

Q ss_pred             EeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhh
Q 011319          301 EIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG  341 (488)
                      +|.++.+..-|||.|..+.|  +.|||+.|..   +.||+++|
T Consensus         6 tV~l~k~~~~lG~~i~g~~~~~~~v~I~~I~~---g~~A~~~g   45 (95)
T d1n7ea_           6 TVELKRYGGPLGITISGTEEPFDPIIISSLTK---GGLAERTG   45 (95)
T ss_dssp             EEEEECTTSCCCEEEECCSSTTSCCEEEEECT---TSHHHHHT
T ss_pred             EEEEEECCCcEeEEEEecccCCCCEEEEEECC---CChHHhcC
Confidence            34444445679999987665  6799999996   79999999

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.95  E-value=0.087  Score=43.06  Aligned_cols=44  Identities=25%  Similarity=0.478  Sum_probs=33.5

Q ss_pred             cceeeeEeeecC-CCcceeeeeee------cccceEEEEEeecCCCCCccchhh
Q 011319          295 GGELAIEIKLKE-GDSKLGFAISR------TEEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       295 ~~E~~lEi~~~~-gdtRlGfaIsR------TEEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      ..++.++|.+.. +..-|||.|.-      .+++-|||..|..   +.||+|+|
T Consensus        22 ~~~~~~~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~---gg~A~~~G   72 (127)
T d1wg6a_          22 SEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIH---GGAAFKDG   72 (127)
T ss_dssp             CEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCS---SSSTHHHH
T ss_pred             CccEEEEEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECC---CCchhccC
Confidence            346678887754 55669999962      2356899999996   79999999

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.073  Score=40.77  Aligned_cols=79  Identities=22%  Similarity=0.366  Sum_probs=47.3

Q ss_pred             eEeeecCCCcceeeeeee-------cccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeee
Q 011319          300 IEIKLKEGDSKLGFAISR-------TEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVS  372 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsR-------TEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVs  372 (488)
                      +||.++-+..-|||.|.-       ..+.-|||++|.+   +.||+|+|..       +.|-.  |=.|.|..|.     
T Consensus         3 ~~V~L~k~~~glG~~i~gg~~~~~~~~~~gi~I~~v~~---gg~A~~~G~L-------~~GD~--Il~VNg~~v~-----   65 (92)
T d2fe5a1           3 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIE---GGAAQKDGRL-------QIGDR--LLAVNNTNLQ-----   65 (92)
T ss_dssp             EEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECT---TSHHHHHCCC-------CTTCE--EEEETTEECT-----
T ss_pred             EEEEEEECCCccCEEEEeecCCccCCCCCCEEEEEECC---CCChhhcCCC-------CCCCE--EEEeCCeecC-----
Confidence            456666666779999962       1234589999996   7999999832       22322  2244554432     


Q ss_pred             cCCceeccCcccccccccccccccCceEEEEE
Q 011319          373 STGAVRCFDTVSLSQKLSLHRHAKVPILLHVF  404 (488)
Q Consensus       373 SsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm  404 (488)
                               ..+..+-+.+-|.+...|.|.|.
T Consensus        66 ---------~~~~~e~~~~lk~~~~~v~L~v~   88 (92)
T d2fe5a1          66 ---------DVRHEEAVASLKNTSDMVYLKVA   88 (92)
T ss_dssp             ---------TCBHHHHHHHHHTCCSEEEEEEE
T ss_pred             ---------CCCHHHHHHHHHcCCCEEEEEEE
Confidence                     33444555555566666666553

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.71  E-value=0.077  Score=41.21  Aligned_cols=47  Identities=26%  Similarity=0.419  Sum_probs=30.7

Q ss_pred             cccceeeeEeeecCCCcceeeeeee---ccc-ceEEEEEeecCCCCCccchhh-H
Q 011319          293 PVGGELAIEIKLKEGDSKLGFAISR---TEE-GFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       293 P~~~E~~lEi~~~~gdtRlGfaIsR---TEE-GFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      |.-.+..+.+.....+.-|||.|.-   ++. ..|||++|.+   +.||+|+| |
T Consensus         2 P~~~~~~~~~v~~~~~~glG~~i~gg~~~~~~~~i~V~~v~~---gg~A~~~G~L   53 (96)
T d1wi4a1           2 PLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIP---GGDCYKDGRL   53 (96)
T ss_dssp             SCCCCTTEEEEEECCSSCCCEEEEECSSSSSCSSEEEEEECT---TSHHHHHCSC
T ss_pred             CCCCCCcEEEEEecCCCccCEEEEeccCCCCCCCEEEEEEeC---CCccccCCCC
Confidence            4444444333333334569999962   333 4699999996   68999998 5

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.69  E-value=0.12  Score=40.47  Aligned_cols=64  Identities=22%  Similarity=0.379  Sum_probs=46.1

Q ss_pred             cCCCcceeeeeee---cccceEEEEEeecCCCCCccchhh-H----------------------HHHHHHHHhcCcEEEE
Q 011319          305 KEGDSKLGFAISR---TEEGFIYISTVIDDDENIPSTRSG-L----------------------SILYKEAVSASKLLVV  358 (488)
Q Consensus       305 ~~gdtRlGfaIsR---TEEGFiyVsSV~~~~~g~~a~RsG-L----------------------~~Ly~~A~~a~kLLVI  358 (488)
                      +.....|||.|.-   ++.+-|||+.|..   |.||+|+| |                      .++.+.+.....|+|+
T Consensus        16 k~~~~~lG~~i~gg~~~~~~~i~V~~v~~---gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~   92 (107)
T d1x6da1          16 KEEGAGLGFSLAGGADLENKVITVHRVFP---NGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIV   92 (107)
T ss_dssp             CCTTSCCSEEEECCSSSSCSSCEEEEECS---SSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEE
T ss_pred             cCCCCccCEEEeeccCCCCCCEEEEEECC---CCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEE
Confidence            3445679999973   3457899999996   79999998 4                      2466666666678888


Q ss_pred             EeecCeeecceee
Q 011319          359 SRVSNQKVLPWIV  371 (488)
Q Consensus       359 SRv~g~kVlPwmV  371 (488)
                      .|-...+.+|-+=
T Consensus        93 ~r~~~p~~~p~~~  105 (107)
T d1x6da1          93 TRKLTPEAMPDLN  105 (107)
T ss_dssp             EECCCSSSCCCCC
T ss_pred             ECCCCCCCCCCCC
Confidence            8766666666543

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.15  E-value=0.064  Score=42.12  Aligned_cols=40  Identities=25%  Similarity=0.361  Sum_probs=28.4

Q ss_pred             EeeecCCCcceeeeeee--cccceEEEEEeecCCCCCccchhhHH
Q 011319          301 EIKLKEGDSKLGFAISR--TEEGFIYISTVIDDDENIPSTRSGLS  343 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsR--TEEGFiyVsSV~~~~~g~~a~RsGL~  343 (488)
                      +|....+...|||.|..  .....|||++|.+   +.||+++||+
T Consensus        13 ~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~---gg~A~~~gL~   54 (101)
T d1ueza_          13 SLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEP---GSLAEKEGLR   54 (101)
T ss_dssp             CCCCCCTTTCSSEEEEECTTTTCCEEEEEECT---TSHHHHHTCC
T ss_pred             EEEECCCCCeeCEEEEecccCCCCEEEEEECC---CChHHhcCCC
Confidence            34444445579999974  2233599999996   6899999973

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.094  Score=40.51  Aligned_cols=55  Identities=27%  Similarity=0.352  Sum_probs=37.7

Q ss_pred             eeEeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319          299 AIEIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV  366 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV  366 (488)
                      |=.+.++-++..|||.|.--+ +.-+||.+|..   ++||+++||+        .|-.++  .|.|+.|
T Consensus         4 Pr~v~l~k~~~g~Gf~i~~~~~~~~~~V~~V~~---g~~A~~aGl~--------~GD~Il--~VNg~~v   59 (91)
T d1g9oa_           4 PRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEP---GSPAEKAGLL--------AGDRLV--EVNGENV   59 (91)
T ss_dssp             CEEEEEECBTTBCCEEEEECTTCSSEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEEC
T ss_pred             CEEEEEEECCCeeeEEEEecCCCCCEEEEEEcC---CCHHHHcCCC--------CCCEEE--EECCEEC
Confidence            334556666778999996432 34589999986   7899999974        344333  5666665

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.053  Score=40.72  Aligned_cols=52  Identities=21%  Similarity=0.445  Sum_probs=36.0

Q ss_pred             eecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecce
Q 011319          303 KLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPW  369 (488)
Q Consensus       303 ~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPw  369 (488)
                      .++.++.-|||.|.-  +.=+||.+|..   ++||+++||+        .|-.+  =.+.|+.|.-|
T Consensus         2 ~l~r~~~g~Gf~l~~--~~~~~V~~V~~---gspA~~aGL~--------~GD~I--l~Vng~~v~~~   53 (77)
T d2f5ya1           2 TIPRGKDGFGFTICC--DSPVRVQAVDS---GGPAERAGLQ--------QLDTV--LQLNERPVEHW   53 (77)
T ss_dssp             EEECBTTBTSEEEEC--SSSCEEEEECT---TSHHHHHTCC--------TTCEE--EEETTEECTTC
T ss_pred             EEecCCCcccEEEEC--CCCEEEEEECC---CCHHHHcCCC--------CCCEE--EEECCEECCCC
Confidence            445556669999973  34489999996   7999999973        44433  36777766544

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.13  Score=40.37  Aligned_cols=46  Identities=22%  Similarity=0.356  Sum_probs=32.2

Q ss_pred             cccceeeeEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchh--hH
Q 011319          293 PVGGELAIEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRS--GL  342 (488)
Q Consensus       293 P~~~E~~lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~Rs--GL  342 (488)
                      |-..-+.|+|...+ +..|||.|....|  .-|||++|..   +.||+|+  ||
T Consensus         5 P~~~~~~v~l~~~~-~g~lG~~l~gg~d~~~~i~V~~v~~---g~~A~~~~g~L   54 (106)
T d2cs5a1           5 PHDNLVLIRMKPDE-NGRFGFNVKGGYDQKMPVIVSRVAP---GTPADLCVPRL   54 (106)
T ss_dssp             CSSCCEEEEECCCS-SSCCSEEEEEEGGGTEEEEEEEECS---SSTTTSSSSCC
T ss_pred             CCCcEEEEEEEeCC-CCCccEEEEeeecCCCCEEEEEEcC---CCcchhccCCC
Confidence            44555556665544 5579999986443  2499999996   7899986  56

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.089  Score=39.91  Aligned_cols=41  Identities=22%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             eeeEeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhhH
Q 011319          298 LAIEIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSGL  342 (488)
Q Consensus       298 ~~lEi~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsGL  342 (488)
                      ||.++.++ +...|||.|.--.  ..-+||..|..   ++||+++||
T Consensus         1 ~p~~V~l~-~~~~~Gf~i~gg~~~~~~v~V~~v~~---gs~A~~~~L   43 (85)
T d1rgwa_           1 MAYSVTLT-GPGPWGFRLQGGKDFNMPLTISRITP---GSKAAQSQL   43 (85)
T ss_dssp             CEEEEEEC-CSSCCCEEECCCGGGTSCCBEEEECT---TSHHHHSSC
T ss_pred             CCEEEEec-CCCCCCEEEEeecCCCCCEEEEEecC---CChHHhCCC
Confidence            56778886 4678999997532  23389999996   799999887

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.84  E-value=0.15  Score=39.68  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             eEeeecCCCcceeeeeeecc-----------cceEEEEEeecCCCCCccchhh
Q 011319          300 IEIKLKEGDSKLGFAISRTE-----------EGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRTE-----------EGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      ++|.-+.++.-|||.|..-.           +..|||++|..   +.||+|+|
T Consensus         6 V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~---gg~A~~~G   55 (98)
T d1rzxa_           6 VRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVP---GGLAESTG   55 (98)
T ss_dssp             EEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECT---TCHHHHHT
T ss_pred             EEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECC---CChHHhcC
Confidence            45555556777999997421           33589999985   79999999

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.15  Score=39.34  Aligned_cols=41  Identities=24%  Similarity=0.512  Sum_probs=29.2

Q ss_pred             eEeeecCCCcceeeeee--------ecccceEEEEEeecCCCCCccchhhHH
Q 011319          300 IEIKLKEGDSKLGFAIS--------RTEEGFIYISTVIDDDENIPSTRSGLS  343 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIs--------RTEEGFiyVsSV~~~~~g~~a~RsGL~  343 (488)
                      +++.+.-+..-|||.|.        ...+..|||++|..   |.||.|+||+
T Consensus        10 ~~v~l~k~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~---gg~A~~~GL~   58 (97)
T d1x5qa1          10 LTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSE---EGPAARAGVR   58 (97)
T ss_dssp             EEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECT---TSHHHHHTCC
T ss_pred             EEEEEEeCCCeeCEEEEeccCCCCccCCCCCEEEEEECC---CChhHhhccc
Confidence            34444445556999995        12344699999996   7999999973

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.48  E-value=0.24  Score=38.90  Aligned_cols=58  Identities=29%  Similarity=0.287  Sum_probs=39.6

Q ss_pred             eeeeEeeecCCCcceeeeeeeccc-c-eEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecc
Q 011319          297 ELAIEIKLKEGDSKLGFAISRTEE-G-FIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLP  368 (488)
Q Consensus       297 E~~lEi~~~~gdtRlGfaIsRTEE-G-FiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlP  368 (488)
                      |..+.|..+ +..-|||.|.--.+ + -|||..|.+   ++||+|+||+        .|-.++  .|.|+.|.-
T Consensus         9 ~~~v~i~~~-~~~glG~~i~~g~~~~~gi~V~~V~~---gs~A~~~gL~--------~GD~Il--~VNg~~v~~   68 (101)
T d1x5na1           9 EKKVFISLV-GSRGLGCSISSGPIQKPGIFISHVKP---GSLSAEVGLE--------IGDQIV--EVNGVDFSN   68 (101)
T ss_dssp             SEEEEECCC-SSCCCCEEEEECCSSSCSEEEEEECT---TSTTTTTTCC--------TTCEEE--EETTEETTS
T ss_pred             cEEEEEEee-CCCcccEEEeccCCCCCCEEEEEECC---CChHHhCCCC--------cccEEE--EECCEECCC
Confidence            455666654 45679999985433 2 499999996   7999999984        344433  267766543

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.2  Score=38.33  Aligned_cols=38  Identities=24%  Similarity=0.482  Sum_probs=26.4

Q ss_pred             EeeecCCCcceeeeeeecc---cc--eEEEEEeecCCCCCccchhh-H
Q 011319          301 EIKLKEGDSKLGFAISRTE---EG--FIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTE---EG--FiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      ++.++... -|||.|.-..   ++  -|||++|..   |.||+|+| |
T Consensus         7 ~v~l~~~~-glG~~i~g~~~~~~~~~gi~V~~v~~---gg~A~~~G~L   50 (92)
T d1t2ma1           7 TVTLKKQN-GMGLSIVAAKGAGQDKLGIYVKSVVK---GGAADVDGRL   50 (92)
T ss_dssp             EEEEECSS-SCCEEEEEECCSSCCSCEEEEEEECT---TSHHHHHTCC
T ss_pred             EEEEeCCC-ccCEEEEeecCCCCCCCCEEEEEEcC---CChHHhcCCC
Confidence            44444433 4999995432   22  489999996   79999988 5

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.98  E-value=0.21  Score=39.15  Aligned_cols=38  Identities=34%  Similarity=0.548  Sum_probs=28.8

Q ss_pred             EeeecCCCcceeeeeeeccc-ceEEEEEeecCCCCCccchhh
Q 011319          301 EIKLKEGDSKLGFAISRTEE-GFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       301 Ei~~~~gdtRlGfaIsRTEE-GFiyVsSV~~~~~g~~a~RsG  341 (488)
                      .+.++-++.-|||.|...++ ..+||++|.+   +.||+|+|
T Consensus        12 ~V~l~k~~~glG~~i~~~~~~~gv~V~~v~~---gs~A~~~G   50 (102)
T d1tp5a1          12 RIVIHRGSTGLGFNIVGGEDGEGIFISFILA---GGPADLSG   50 (102)
T ss_dssp             EEEEECTTSCCCEEEEECGGGCCEEEEEECT---TSHHHHHS
T ss_pred             EEEEEeCCCcccEEEEeccCCCCEEEEEecC---CchHHHcC
Confidence            34444456679999986544 4789999986   79999998

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.64  E-value=0.24  Score=37.65  Aligned_cols=43  Identities=30%  Similarity=0.545  Sum_probs=28.8

Q ss_pred             ceeeeEeeecC-CCcceeeeeeecc--------cceEEEEEeecCCCCCccchhh
Q 011319          296 GELAIEIKLKE-GDSKLGFAISRTE--------EGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       296 ~E~~lEi~~~~-gdtRlGfaIsRTE--------EGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      ||+--.+.++. +...|||.|..-.        +.=|||+.|..   +.||+++|
T Consensus         1 Ge~i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~---gs~A~~~G   52 (94)
T d1ihja_           1 GELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVP---DSPAHLCG   52 (94)
T ss_dssp             CCEEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECT---TSHHHHHC
T ss_pred             CCEEEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECC---CCHHHHhC
Confidence            44444444443 4567999996321        11289999995   79999998

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.59  E-value=0.081  Score=42.17  Aligned_cols=59  Identities=14%  Similarity=0.367  Sum_probs=37.5

Q ss_pred             EeeeccccceeeeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319          288 RLWYAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL  367 (488)
Q Consensus       288 RLWy~P~~~E~~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl  367 (488)
                      +-|+.|-    .|+|+-+  +.-|||.|.- +.+ |||+.|..   +.||+|+||+        .|-.|+  .|.|+.|.
T Consensus        11 ~~~~~pr----~v~l~k~--~~g~Gf~i~g-~~~-v~V~~V~~---~spA~~~GL~--------~GD~Il--~INg~~v~   69 (111)
T d1vaea_          11 KRWSPPR----GIHFTVE--EGDLGFTLRG-NTP-VQVHFLDP---HCSASLAGAK--------EGDYIV--SIQGVDCK   69 (111)
T ss_dssp             CEECCCC----CCCEECC--SSCCSCCEES-SSS-CEECCCCT---TSSHHHHHCC--------TTCEEE--EETTEECS
T ss_pred             cCCCCCE----EEEEEEC--CCccCEEEEC-Ccc-EEEEEEcC---CChHHhcccC--------cccEEE--EECCEEcC
Confidence            3466664    3444443  4469999953 334 88999985   7999999973        344433  35666544

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=0.18  Score=40.61  Aligned_cols=39  Identities=23%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             eEeeecCCCcceeeeeeec----ccceEEEEEeecCCCCCccchhh
Q 011319          300 IEIKLKEGDSKLGFAISRT----EEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT----EEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      |+|.-+.++..|||.|.-.    ++.-|||++|.+   +.||+|+|
T Consensus        23 V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~---gg~A~~~g   65 (124)
T d1wh1a_          23 VDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDP---NSIAAKDG   65 (124)
T ss_dssp             BCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECS---SSHHHHTC
T ss_pred             EEEEECCCCCcccEEEEecCCCCCCCCEEEEEECC---CChhhhhc
Confidence            4555566788999999643    234499999996   79999998

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=0.25  Score=38.71  Aligned_cols=41  Identities=27%  Similarity=0.570  Sum_probs=30.3

Q ss_pred             eeEeeecCCCcceeeeeee----------cccceEEEEEeecCCCCCccchhh-H
Q 011319          299 AIEIKLKEGDSKLGFAISR----------TEEGFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsR----------TEEGFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      .+++.++-+...|||.|.-          ..+.=|||+.|.+   +.||+|+| |
T Consensus         9 ~~~V~l~k~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~---gs~A~~~G~L   60 (107)
T d1uhpa_           9 SLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVD---SGPAAKEGGL   60 (107)
T ss_dssp             EEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECS---SSHHHHTTCC
T ss_pred             EEEEEEEECCCccCEEEEecccCCCcccccCCCCEEEEEECC---CCHHHHhCCC
Confidence            4566666667789999951          2233479999996   79999998 5

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.79  E-value=0.2  Score=40.45  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=25.6

Q ss_pred             Ccceeeeee---ecccceEEEEEeecCCCCCccchhh
Q 011319          308 DSKLGFAIS---RTEEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       308 dtRlGfaIs---RTEEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      +..|||.|.   .+..|.|||.+|.+   +.||+|+|
T Consensus        27 ~~~lG~~i~gg~d~~~~~v~I~~v~~---gg~A~~~G   60 (118)
T d1v6ba_          27 EGSLDLALEGGVDSPVGKVVVSAVYE---GGAAERHG   60 (118)
T ss_dssp             CSCCCCEEEEBTTSSSCSEEEEECCT---TSHHHHHC
T ss_pred             CCCCCEEEEeeecCCCCCEEEEEECC---CChHHhcC
Confidence            558999996   34457899999996   79999998

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.85  E-value=0.24  Score=40.42  Aligned_cols=40  Identities=28%  Similarity=0.493  Sum_probs=31.7

Q ss_pred             eeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-H
Q 011319          299 AIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      .+.++++.|..-|||.|.... .+|||.+|..   +.||+|+| |
T Consensus        28 ~~~v~l~~g~~GlG~~i~~~~-~~i~V~~v~~---gg~A~~~G~l   68 (126)
T d1wifa_          28 VIQTKLTVGNLGLGLVVIQNG-PYLQISHLIN---KGAAASDGIL   68 (126)
T ss_dssp             EEEEEEECCTTCCCCCEEEET-TEEEECCCCT---TSSGGGCSSS
T ss_pred             EEEEEEeeCCCcEEEEEEecC-CcEEEEEECC---CChHHHcCCC
Confidence            456677777778999997654 4699999995   79999998 5

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.68  E-value=0.34  Score=37.91  Aligned_cols=40  Identities=25%  Similarity=0.479  Sum_probs=30.4

Q ss_pred             eeEeeecCCCcceeeeeeeccc-----ceEEEEEeecCCCCCccchhh
Q 011319          299 AIEIKLKEGDSKLGFAISRTEE-----GFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIsRTEE-----GFiyVsSV~~~~~g~~a~RsG  341 (488)
                      ..++.++-+..-|||.|.--.+     .-|||.+|.+   +.||+|+|
T Consensus         9 ~~~V~l~k~~~glG~~i~~~~~~~~~~~~i~V~~v~~---gg~A~~~G   53 (110)
T d1um1a_           9 VFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLP---GSPAAADG   53 (110)
T ss_dssp             EEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECT---TSHHHHHS
T ss_pred             EEEEEEEECCCCCCEEEEeecCCCCCCCCEEEEEECC---CCHHHHcC
Confidence            3677777667779999964322     2489999996   79999998

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.27  E-value=0.33  Score=37.42  Aligned_cols=46  Identities=24%  Similarity=0.392  Sum_probs=33.6

Q ss_pred             ccccceeeeEeeecCCCcceeeeeee----cccceEEEEEeecCCCCCccchhh
Q 011319          292 APVGGELAIEIKLKEGDSKLGFAISR----TEEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       292 ~P~~~E~~lEi~~~~gdtRlGfaIsR----TEEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      .|..+.+.++|.-+ +...|||.|.-    .....|||+.|..   +.||+|+|
T Consensus         6 ~p~~~~~~V~l~k~-~~~~lG~~v~~~~~~~~~~~i~V~~v~~---gg~A~~~G   55 (99)
T d1p1da2           6 IPSSGTFHVKLPKK-HSVELGITISSPSSRKPGDPLVISDIKK---GSVAHRTG   55 (99)
T ss_dssp             BCCSSCEEEEECCC-SSCCCCCEEECSCSSSTTCCCEEEECCS---SSHHHHTS
T ss_pred             cCCCCcEEEEEEEC-CCCccCEEEEecCCCCCCCCEEEEEEcC---CchhhhcC
Confidence            46677777776544 34679999963    2234599999996   79999988

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.24  E-value=0.41  Score=37.64  Aligned_cols=39  Identities=28%  Similarity=0.421  Sum_probs=28.1

Q ss_pred             eeEeeecCCCcceeeeee-----------ecccceEEEEEeecCCCCCccchhh
Q 011319          299 AIEIKLKEGDSKLGFAIS-----------RTEEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       299 ~lEi~~~~gdtRlGfaIs-----------RTEEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      .|+|.-+++ ..|||.|.           ...+.-|||..|.+   +.||+|+|
T Consensus        12 ~V~l~k~~~-~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~---gg~A~~~G   61 (111)
T d1ujua_          12 ELCIQKAPG-ERLGISIRGGARGHAGNPRDPTDEGIFISKVSP---TGAAGRDG   61 (111)
T ss_dssp             CEEEECCTT-CCCCEEEECCSSSSCSCSSCTTCCCCEEEEECT---TSHHHHHS
T ss_pred             EEEEEeCCC-CccCEEEeccccCCcccccccCCCCEEEEEECC---CChHHHcC
Confidence            345554443 47999996           23345699999996   79999998

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.74  E-value=0.39  Score=37.52  Aligned_cols=78  Identities=19%  Similarity=0.273  Sum_probs=47.4

Q ss_pred             eEeeecCCCcceeeeeee--------cccceEEEEEeecCCCCCccchhhHHHHHHHHHhcC-cEEEEEeecCeeeccee
Q 011319          300 IEIKLKEGDSKLGFAISR--------TEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSAS-KLLVVSRVSNQKVLPWI  370 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsR--------TEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~-kLLVISRv~g~kVlPwm  370 (488)
                      -.+.++-++.-|||.|.-        +.+.=|||++|..   +.||+|+|..       +.| +||=   |.|+.     
T Consensus         9 ~~v~l~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~---gs~A~~~G~L-------~~GD~Il~---INg~~-----   70 (105)
T d1whaa_           9 HVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAE---GGAAHRAGTL-------QVGDRVLS---INGVD-----   70 (105)
T ss_dssp             EEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCT---TSSHHHHSSC-------CTTCEEEE---ESSCB-----
T ss_pred             EEEEEEECCCccCEEEEeccCCcccccCCCCEEEEEEcC---CCchhhcCCc-------cCCCEEEE---ECCEE-----
Confidence            345555556669999962        2333489999996   7999999932       233 3332   33332     


Q ss_pred             eecCCceeccCcccccccccccccccCceEEEEE
Q 011319          371 VSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVF  404 (488)
Q Consensus       371 VsSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm  404 (488)
                               ....+..+-+.+-|.+...+.|-|.
T Consensus        71 ---------v~~~~~~ev~~~l~~~~~~v~l~v~   95 (105)
T d1whaa_          71 ---------VTEARHDHAVSLLTAASPTIALLLE   95 (105)
T ss_dssp             ---------CTTCCHHHHHHHHTSCCSCEEEEEE
T ss_pred             ---------cCCCcHHHHHHHHHcCCCeEEEEEE
Confidence                     2334455566666667677777654

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.16  E-value=0.41  Score=36.54  Aligned_cols=39  Identities=28%  Similarity=0.509  Sum_probs=25.3

Q ss_pred             eEeeecCCCcceeeeeeec---------cc--ceEEEEEeecCCCCCccchhh-H
Q 011319          300 IEIKLKEGDSKLGFAISRT---------EE--GFIYISTVIDDDENIPSTRSG-L  342 (488)
Q Consensus       300 lEi~~~~gdtRlGfaIsRT---------EE--GFiyVsSV~~~~~g~~a~RsG-L  342 (488)
                      ++|.-++ ...|||.|..-         .+  .=|||++|.+   +.||+|+| |
T Consensus         5 V~l~k~~-~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~---~s~A~~~G~L   55 (96)
T d2fcfa1           5 VELWREP-SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLE---DSPAGKNGTL   55 (96)
T ss_dssp             EEECCCC--CCCCEEEECCCC-------------EEEEEECS---SSHHHHHCCC
T ss_pred             EEEEeCC-CCCCCEEEEcccCCCcccccccCCCCEEEEEECC---CCHHHHcCCC
Confidence            3444443 45799999632         12  2379999996   69999998 5

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.46  E-value=0.38  Score=36.37  Aligned_cols=34  Identities=24%  Similarity=0.600  Sum_probs=24.7

Q ss_pred             eeecCCC-cceeeeeeecccceEEEEEeecCCCCCccchhhHH
Q 011319          302 IKLKEGD-SKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLS  343 (488)
Q Consensus       302 i~~~~gd-tRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~  343 (488)
                      +.++.+. ..|||.|..   |  +|++|.+   +.||+|+||+
T Consensus         8 V~l~k~~~g~~Gf~i~~---g--~V~~v~~---g~~A~~~Gl~   42 (82)
T d1r6ja_           8 ITMHKDSTGHVGFIFKN---G--KITSIVK---DSSAARNGLL   42 (82)
T ss_dssp             EEEECCTTSCCCEEEET---T--EEEEECT---TSHHHHHTCC
T ss_pred             EEEEeCCCCCcCEEEEE---E--EEEEECC---CChHHhcCcC
Confidence            3444443 369999974   3  5999986   7999999974

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.34  E-value=0.48  Score=38.00  Aligned_cols=37  Identities=19%  Similarity=0.354  Sum_probs=26.9

Q ss_pred             eeecCCCcceeeeeee-----cccceEEEEEeecCCCCCccchhh
Q 011319          302 IKLKEGDSKLGFAISR-----TEEGFIYISTVIDDDENIPSTRSG  341 (488)
Q Consensus       302 i~~~~gdtRlGfaIsR-----TEEGFiyVsSV~~~~~g~~a~RsG  341 (488)
                      +.++.+..-|||.|.-     .++..|||.+|..   |.||+|+|
T Consensus        33 V~l~k~~~glG~~i~gg~~~~~~~~~i~V~~v~~---gg~A~~~G   74 (130)
T d1i16a_          33 VTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFK---GAASEQSE   74 (130)
T ss_dssp             EEEETTSSSTTEEEECCCCCSSSCCCCEEEEECS---SCCCSSSC
T ss_pred             EEEEeCCCccCEEEeeccCCCCCCCCEEEEEECC---CChHHhcC
Confidence            3344444569999962     2345699999996   79999998