Citrus Sinensis ID: 011364
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | 2.2.26 [Sep-21-2011] | |||||||
| O48593 | 567 | Asparagine--tRNA ligase, | yes | no | 1.0 | 0.858 | 0.831 | 0.0 | |
| Q6MEC9 | 467 | Asparagine--tRNA ligase O | yes | no | 0.954 | 0.995 | 0.600 | 1e-169 | |
| A3DBI2 | 464 | Asparagine--tRNA ligase O | yes | no | 0.950 | 0.997 | 0.566 | 1e-159 | |
| Q8DG51 | 462 | Asparagine--tRNA ligase O | yes | no | 0.921 | 0.971 | 0.601 | 1e-157 | |
| P52276 | 462 | Asparagine--tRNA ligase O | N/A | no | 0.909 | 0.958 | 0.590 | 1e-157 | |
| Q899M9 | 463 | Asparagine--tRNA ligase O | yes | no | 0.948 | 0.997 | 0.546 | 1e-156 | |
| Q74E08 | 461 | Asparagine--tRNA ligase O | yes | no | 0.942 | 0.995 | 0.556 | 1e-156 | |
| A0PY64 | 463 | Asparagine--tRNA ligase O | yes | no | 0.915 | 0.963 | 0.566 | 1e-156 | |
| P58692 | 463 | Asparagine--tRNA ligase O | yes | no | 0.924 | 0.971 | 0.582 | 1e-156 | |
| B0JN99 | 454 | Asparagine--tRNA ligase O | yes | no | 0.897 | 0.962 | 0.589 | 1e-156 |
| >sp|O48593|SYNO_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/487 (83%), Positives = 447/487 (91%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 141 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 440
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560
Query: 481 TPGSVEF 487
TP S EF
Sbjct: 561 TPASAEF 567
|
Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|Q6MEC9|SYN_PARUW Asparagine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 595 bits (1534), Expect = e-169, Method: Compositional matrix adjust.
Identities = 287/478 (60%), Positives = 356/478 (74%), Gaps = 13/478 (2%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
+ KI ++G E +G I + GWVRT+R Q + TFIE+NDGS LSN Q + T D
Sbjct: 2 RTKIKSLRGTTPEVRALIGHDITLKGWVRTVRNQKTFTFIEINDGSTLSNFQIIATPDIA 61
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKRVSRE 129
GYDQ+ + L +TG S+ G +V S G +Q +E++ I ++GK DP Y +QKKR + E
Sbjct: 62 GYDQLINQL-STGVSVSAIGTIVESPGKEQNLEMQATAITIIGKCDPEVYLLQKKRHTFE 120
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR+ AHLRPRTNT GAV RVRNALA+ATH+FFQ+ GF++I +PIIT SDCEGAG+ F V
Sbjct: 121 FLRSIAHLRPRTNTIGAVTRVRNALAFATHQFFQKRGFLYIHTPIITGSDCEGAGKMFQV 180
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL A +P +G +D++QDFF KP +LTVSGQLN E YA ALS+VYTF
Sbjct: 181 TTL--DQNNPARTP--------EGRVDYTQDFFGKPTYLTVSGQLNGEIYACALSDVYTF 230
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309
GPTFRAENSNTSRHLAEFWMIEPE+AFADL D+M CA YL+Y+++Y+LDNC+EDM+FFN
Sbjct: 231 GPTFRAENSNTSRHLAEFWMIEPEMAFADLNDNMDCAEDYLKYILKYVLDNCQEDMEFFN 290
Query: 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 369
+ +I RL V F + SYT A+ +L KA KKFE+ VKWG DLQSEHER+L EE
Sbjct: 291 KHVATDLISRLEHVINTSFERASYTYAVRILEKADKKFEYPVKWGLDLQSEHERFLAEEF 350
Query: 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 429
FG PVI++DYPK+IKAFYMR N+D +TVAAMD+LVP++GE+IGGSQREERL LE +L
Sbjct: 351 FGK-PVILTDYPKDIKAFYMRTNEDNKTVAAMDVLVPKVGEIIGGSQREERLSVLESKLK 409
Query: 430 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
E L + YWWYL+LR +GSVPH+GFG GFERLVQF TG+ENIRD IPFPR PG +F
Sbjct: 410 EFNLPAEEYWWYLELRKFGSVPHSGFGAGFERLVQFTTGMENIRDVIPFPRHPGKADF 467
|
Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A3DBI2|SYN_CLOTH Asparagine--tRNA ligase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 560 bits (1443), Expect = e-159, Method: Compositional matrix adjust.
Identities = 270/477 (56%), Positives = 343/477 (71%), Gaps = 14/477 (2%)
Query: 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMT-SDAE 70
+K VK D VG IVVAGWVRT+R + FIE+NDGS N+Q V +
Sbjct: 1 MKTTLVKSLYRNTKDYVGKEIVVAGWVRTVRDSKAFGFIELNDGSFFKNLQIVFEEKNLP 60
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF 130
+ ++ ++ G++I G +V + G+KQ ELK KI + G S P YP+QKKR S E+
Sbjct: 61 NFKEIAK--LSVGSAIIAHGELVETPGAKQPFELKATKIEIEGASTPDYPLQKKRHSFEY 118
Query: 131 LRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT 190
LRT AHLRPRTNTF AV RVR+ LAYA HKFFQE GF+++ +PIIT SD EGAG+ F VT
Sbjct: 119 LRTIAHLRPRTNTFSAVFRVRSLLAYAIHKFFQERGFVYVHTPIITGSDAEGAGQMFKVT 178
Query: 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFG 250
TL ++ P+ +DG +D+S+DFF++ LTVSGQL ETY+ A N+YTFG
Sbjct: 179 TL----------DINNPPRKEDGTVDFSKDFFDRETNLTVSGQLEGETYSMAFRNIYTFG 228
Query: 251 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 310
PTFRAENSNT+RH AEFWM+EPE+AFADL+DDM A L+Y++ Y L+N E+M+FFN
Sbjct: 229 PTFRAENSNTARHAAEFWMVEPEIAFADLEDDMELAEDMLKYIINYCLENAPEEMEFFNN 288
Query: 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 370
+I+ ++DRL+ + DF ++YT+AI++L KA +KFE+ VKWG DLQ+EHERYLTE+ F
Sbjct: 289 FIDNTLLDRLNNIVSSDFAHVTYTEAIDILSKADQKFEYPVKWGNDLQTEHERYLTEKVF 348
Query: 371 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 430
PV V+DYPK+IKAFYMR NDD +TVAAMD+LVP +GE+IGGSQREERL+YLE R+ E
Sbjct: 349 KK-PVFVTDYPKDIKAFYMRLNDDNKTVAAMDLLVPGVGEIIGGSQREERLDYLENRMKE 407
Query: 431 LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
L L + YWWYLDLR YGS HAGFGLGFER + + TG+ NIRD IPFPRT S EF
Sbjct: 408 LGLKMEDYWWYLDLRRYGSTRHAGFGLGFERAIMYITGMSNIRDVIPFPRTVHSAEF 464
|
Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q8DG51|SYN_THEEB Asparagine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 556 bits (1434), Expect = e-157, Method: Compositional matrix adjust.
Identities = 278/462 (60%), Positives = 332/462 (71%), Gaps = 13/462 (2%)
Query: 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86
+VG I V GWVRT R TF+ +NDGS L+ +Q V+ + L TTGA+
Sbjct: 13 QVGDRITVKGWVRTKRELKECTFVNLNDGSTLAGLQVVIPNTVAAATPTMKDL-TTGAAA 71
Query: 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFG 145
G +V S G Q +EL +I L G +DP +YP+QKKR S EFLRT AHLRPRTNT G
Sbjct: 72 EFTGELVRSPGKNQAIELHAEEIHLWGTADPETYPLQKKRHSFEFLRTIAHLRPRTNTLG 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205
AV RVRNA A A H+FFQE GF+W+ +PIITASDCEGAGE F VTTL +
Sbjct: 132 AVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGELFTVTTL----------DLT 181
Query: 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265
PKT +G ID+SQDFF + A+LTVSGQL AE ATA +NVYTFGPTFRAENSNTSRHLA
Sbjct: 182 QPPKTPEGKIDFSQDFFGRRAYLTVSGQLEAEIMATAFTNVYTFGPTFRAENSNTSRHLA 241
Query: 266 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 325
EFWM+EPE+AF DL+ DM A A+LQ+V RY+LD+C EDM FF I+ ++ +A
Sbjct: 242 EFWMVEPEMAFCDLRGDMELAEAFLQFVFRYVLDHCPEDMAFFQERIDHSVMATAEQMAT 301
Query: 326 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385
+ F LSY++AI++L K+ + FEF V WG DLQSEHERYL EE + PVIV DYP IK
Sbjct: 302 QPFAHLSYSEAIQVLEKSGRAFEFPVAWGLDLQSEHERYLAEE-YCQRPVIVYDYPAAIK 360
Query: 386 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLR 445
AFYMR NDDG+TVAAMD+L P+IGE+IGGSQREER + L+ R+ L+ YWWYLDLR
Sbjct: 361 AFYMRLNDDGKTVAAMDILAPKIGEIIGGSQREERFDVLQERIVTQGLDPAPYWWYLDLR 420
Query: 446 HYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
YGSVPHAGFGLGFERLVQF TG++NIRD IPFPRTPG+ EF
Sbjct: 421 RYGSVPHAGFGLGFERLVQFMTGMDNIRDVIPFPRTPGNAEF 462
|
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P52276|SYN_SYNY3 Asparagine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asnS PE=3 SV=2 | Back alignment and function description |
|---|
Score = 553 bits (1426), Expect = e-157, Method: Compositional matrix adjust.
Identities = 270/457 (59%), Positives = 336/457 (73%), Gaps = 14/457 (3%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
++V GW+RT R +F+EVNDGS L+N+Q V+ YD++ S L TGA++ ++G
Sbjct: 19 VMVQGWLRTKRTLKDFSFVEVNDGSSLANLQVVLDGSLADYDRLLSQL-QTGAALVVEGK 77
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV 150
+ PS G Q+VELK K+ L+G +DP SYP+QKKR S EFLRT HLRPRTNT GAV RV
Sbjct: 78 LAPSPGKGQRVELKATKLELLGGADPGSYPLQKKRHSFEFLRTIGHLRPRTNTIGAVMRV 137
Query: 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKT 210
RNA A A H+FFQE GF+W+ +PIITASDCEGAG+ F VTTL + +PK
Sbjct: 138 RNACATAIHQFFQERGFLWVHTPIITASDCEGAGDLFKVTTL----------DLQRVPKN 187
Query: 211 KDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMI 270
+G ID+SQDFF K A+LTVSGQL AE A A NVYTFGPTFRAENSNTSRHLAEFWM+
Sbjct: 188 GEG-IDYSQDFFGKQAYLTVSGQLEAEVMALAFQNVYTFGPTFRAENSNTSRHLAEFWMV 246
Query: 271 EPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQ 330
EPE+AF DL+ D A +L+Y+ +++L+ C EDM+FF+ I+ ++ + +F
Sbjct: 247 EPEMAFCDLEGDRQWAEEFLKYIFKFVLEKCPEDMEFFDQRIDNTVLATADNIINNEFAW 306
Query: 331 LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMR 390
L+Y++AI+LL KA +KFE+ V WG DLQSEHERYL E F P IV+DYPK+IKAFYMR
Sbjct: 307 LTYSEAIKLLEKADQKFEYPVAWGVDLQSEHERYLAETVFKR-PTIVTDYPKDIKAFYMR 365
Query: 391 QNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV 450
NDDG+TVAAMD+L P+IGE+IGGSQREERL+ L R+ E + + WWYLDLR YGSV
Sbjct: 366 LNDDGKTVAAMDILAPKIGEIIGGSQREERLDILTQRMQEQGVPEEDLWWYLDLRRYGSV 425
Query: 451 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
PHAGFGLGFER+VQF TG+ NIRD IPFPRTP + EF
Sbjct: 426 PHAGFGLGFERIVQFMTGMANIRDVIPFPRTPMNAEF 462
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q899M9|SYN_CLOTE Asparagine--tRNA ligase OS=Clostridium tetani (strain Massachusetts / E88) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1425), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/478 (54%), Positives = 351/478 (73%), Gaps = 16/478 (3%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
KK+ I + P + +++ IVVAGW+RT R + FIE+NDGS N+Q ++ ++
Sbjct: 2 KKISIKQLYREPEKFINK---DIVVAGWIRTERTSKNFGFIELNDGSFFKNLQIIIDTNL 58
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
+ +D+V + +SI ++G +V + +KQ E++ +K+ + G S YP+QKKR S E
Sbjct: 59 DNFDKVSK--LPISSSIVVEGKLVATPSAKQPFEVQASKVTVEGTSLQDYPLQKKRHSFE 116
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR+ AHLRPR+NTF AV R+R+ AYA HKFFQE F+++ +PIITASDCEGAGE F V
Sbjct: 117 FLRSIAHLRPRSNTFSAVFRIRSLAAYAVHKFFQEKNFVYVHTPIITASDCEGAGEMFRV 176
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL ++ IPK +G ID+SQDFF+K A LTVSGQL+AE+YA A NVYTF
Sbjct: 177 TTL----------DLNNIPKNDEGKIDFSQDFFDKDAKLTVSGQLSAESYALAFGNVYTF 226
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309
GPTFRAENSNT+RH +EFWMIEPE+AFADL D M A ++Y++ Y+L+N E+M+FFN
Sbjct: 227 GPTFRAENSNTARHASEFWMIEPEMAFADLTDYMDVAEEMVKYIINYVLENAPEEMNFFN 286
Query: 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 369
++I+K + RL V +F +++YT+A++LL K+ +KF++ V+WG DLQ+EHERY+TE+
Sbjct: 287 SFIDKDLFKRLDNVVNSEFKRITYTEAVDLLQKSGEKFQYPVEWGIDLQTEHERYITEKI 346
Query: 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 429
FG PV V+DYPK+IKAFYMR N+D +TVAA D+LVP +GE+IGGSQREERL+ LE R+
Sbjct: 347 FGK-PVFVTDYPKDIKAFYMRLNEDNKTVAAADLLVPGVGEIIGGSQREERLDVLEERMK 405
Query: 430 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
E LN YWWYL+LR YGS H+GFGLGFER++ + TG+ NIRD IPFPRTPGS EF
Sbjct: 406 EFDLNEKDYWWYLELRKYGSAKHSGFGLGFERILMYMTGISNIRDVIPFPRTPGSAEF 463
|
Clostridium tetani (strain Massachusetts / E88) (taxid: 212717) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q74E08|SYN_GEOSL Asparagine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 266/478 (55%), Positives = 341/478 (71%), Gaps = 19/478 (3%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++++I ++ G G + ++V GWVRT R V F+ VNDGSCL+++Q V
Sbjct: 3 ERIRIREILAGTPAGTE-----VIVKGWVRTSRVGKGVAFLAVNDGSCLASLQVVAEPGL 57
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
Y +++ I TGA++ ++G V S + Q VEL K+V+VG +D YP+QKKR + E
Sbjct: 58 ANYHELRG--IGTGAAVAVRGIVAESPAAGQAVELHATKVVVVGGADEQYPLQKKRHTFE 115
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
+LRT AHLRPR+NTFGAV RVR++LA A H+FF E GF+++ +PIIT SDCEGAGE F V
Sbjct: 116 YLRTIAHLRPRSNTFGAVFRVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRV 175
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL PS+ P DG +D+SQDFF A LTVSGQL E +A A S++YTF
Sbjct: 176 TTLDPSA-----------PPMADGAVDFSQDFFAAQAGLTVSGQLEGELFAQAFSDIYTF 224
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309
GPTFRAENSNT RH AEFWMIEPE+AFADL+DD A A + +Y+ R++LDNC EDM FFN
Sbjct: 225 GPTFRAENSNTPRHAAEFWMIEPEMAFADLRDDAALAEDFFRYLCRHVLDNCAEDMAFFN 284
Query: 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 369
+++G++ R+ VA F + Y AIE L +A FE+ V+WG DLQ+EHERYLTE+
Sbjct: 285 EHVDRGLLARVEQVAGSSFAMMEYGVAIEHLKRAAVPFEYPVEWGLDLQTEHERYLTEQV 344
Query: 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 429
GG PV V +YP+EIKAFYMR+NDDGRTVAAMD+LVP++GE+IGGSQREER + LE R+
Sbjct: 345 VGG-PVFVVNYPQEIKAFYMRRNDDGRTVAAMDLLVPKVGEIIGGSQREERYDLLESRMR 403
Query: 430 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
E + +S WWYLD R +GS PHAGFGLGFERL+ + TG+ENIRD IPFPRTP EF
Sbjct: 404 EGGIAPESLWWYLDSRRWGSTPHAGFGLGFERLIMYLTGMENIRDVIPFPRTPRHAEF 461
|
Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A0PY64|SYN_CLONN Asparagine--tRNA ligase OS=Clostridium novyi (strain NT) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 260/459 (56%), Positives = 340/459 (74%), Gaps = 13/459 (2%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G + ++GW+RTLRA + FIEVNDGS N+Q V ++ E + ++ I++ SI +
Sbjct: 18 GKEVKISGWIRTLRASNKFGFIEVNDGSFFKNIQVVFGAELENFKEISKYAISS--SISV 75
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G VV ++G+KQ E+ K+VL GKSD YP+QKKR + E+LR+ AHLRPR+N F AV
Sbjct: 76 EGEVVITEGAKQPFEIHAKKVVLEGKSDADYPLQKKRHTFEYLRSIAHLRPRSNAFSAVF 135
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVR+ AYA HKFFQ+ GF+++ +PIIT SDCEGAGE F VTTL E+P P
Sbjct: 136 RVRSLAAYAIHKFFQDQGFVYVHTPIITGSDCEGAGEMFRVTTL------DMENP----P 185
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
K + G +D+ +DFF K A LTVSGQL AE YA A NVYTFGPTFRAENSNT+RH +EFW
Sbjct: 186 KDEKGNVDYKEDFFGKQANLTVSGQLEAEIYALAFRNVYTFGPTFRAENSNTARHASEFW 245
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
MIEPE+AFA+LKD M A ++Y++ Y+ +N E+M+FFN +I+KG+++RL V DF
Sbjct: 246 MIEPEMAFAELKDYMDVAEQMVKYIINYVRENAPEEMEFFNKFIDKGLLERLDNVVNSDF 305
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
++SYT+A+E+L K+ +FE+ V+WG DLQ+EHERYLTE+ + PV V+DYPK+IKAFY
Sbjct: 306 ARISYTEAVEILQKSGAEFEYPVEWGIDLQTEHERYLTEQIYKK-PVFVTDYPKDIKAFY 364
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG 448
MR NDD +TVAA D+LVP IGE+IGGSQREERL+ LE R+ EL L ++ YWWYL+LR YG
Sbjct: 365 MRMNDDNKTVAAADLLVPGIGEIIGGSQREERLDILEARMAELGLEKEDYWWYLELRKYG 424
Query: 449 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
HAG+GLGFER++ + TG+ NIRD IPFPRTPG EF
Sbjct: 425 ETKHAGYGLGFERMIMYLTGMGNIRDVIPFPRTPGVSEF 463
|
Clostridium novyi (strain NT) (taxid: 386415) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P58692|SYN_NOSS1 Asparagine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 274/470 (58%), Positives = 336/470 (71%), Gaps = 20/470 (4%)
Query: 19 GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG 78
G P+E L VV GWVRT R FIEVNDGS L N+Q V+ D Y +
Sbjct: 13 GQPDESL-------VVQGWVRTKRELKGFAFIEVNDGSSLGNLQVVINQDLPDYAVIVKQ 65
Query: 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHL 137
L TGAS+ + G +V SQG Q++ELK + + G++DP +YP+QKKR S EFLRT HL
Sbjct: 66 L-NTGASVEVNGVLVASQGKGQRIELKAEAVKVYGEADPETYPLQKKRHSFEFLRTIGHL 124
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197
R RTN+FGAV RVRNA + A H+FFQE GF+W+ +PIITASDCEGAGE F VT+L
Sbjct: 125 RSRTNSFGAVFRVRNACSAAIHQFFQERGFLWVHTPIITASDCEGAGELFSVTSL----- 179
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAEN 257
+ IP+T++ ID+SQDFF KP +LTVSGQL AE A A SNVYTFGPTFRAEN
Sbjct: 180 -----DLKQIPRTENQGIDYSQDFFAKPTYLTVSGQLEAEVMAMAFSNVYTFGPTFRAEN 234
Query: 258 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 317
SNTSRHLAEFWM+EPE+AF DL+ DM A A+L+++ ++L+ C EDM+FFN I+ ++
Sbjct: 235 SNTSRHLAEFWMVEPEMAFCDLEGDMDLAEAFLKHIFNHVLEKCPEDMEFFNQRIDNTVL 294
Query: 318 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIV 377
+ F +L+YTDAI+LL KA KFE+ V WG DLQSEHERYL E+ F PVIV
Sbjct: 295 ATAENIINNQFERLTYTDAIKLLEKADVKFEYPVSWGLDLQSEHERYLAEQLFKK-PVIV 353
Query: 378 SDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS 437
+DYP +IKAFYMR +DD +TV AMD+L P+IGE+IGGSQREERL+ LE R+ + +
Sbjct: 354 TDYPAQIKAFYMRLSDDEKTVRAMDVLAPKIGEIIGGSQREERLDVLERRVLAQGMQPED 413
Query: 438 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
WWYLDLR YG+VPHAGFGLGFERLVQF TG+ NIRD IPFPRTP + EF
Sbjct: 414 LWWYLDLRRYGTVPHAGFGLGFERLVQFITGMGNIRDVIPFPRTPQNAEF 463
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|B0JN99|SYN_MICAN Asparagine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 551 bits (1419), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/456 (58%), Positives = 331/456 (72%), Gaps = 19/456 (4%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVRT R TF+EVNDGS L+N+Q ++ Y+ V I+TGA+I + GN
Sbjct: 18 VTVQGWVRTKRELKEFTFLEVNDGSSLANLQVILEPTLPDYENVLKT-ISTGAAIAVSGN 76
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVR 151
+VPS G Q +ELK +I L G P YP+QKKR S EFLRT AHLR RTNT GAV RVR
Sbjct: 77 LVPSPGKGQNIELKAAEITLYGDCPPDYPLQKKRHSFEFLRTIAHLRARTNTLGAVMRVR 136
Query: 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTK 211
NA A A H FFQE GFIW+ +PIITA+DCEGAGE F VT+L + P +
Sbjct: 137 NACATAIHSFFQEKGFIWVHTPIITANDCEGAGELFTVTSL------DLKKPAN------ 184
Query: 212 DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 271
+++DFF K A+LTVSGQL AE A ALSNVYTFGPTFRAENSNTSRHLAEFWM+E
Sbjct: 185 -----FAEDFFGKRAYLTVSGQLQAEVMAMALSNVYTFGPTFRAENSNTSRHLAEFWMVE 239
Query: 272 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 331
PE+AF DL+ D A A+L+Y+ +++L+NC ED+ FFN I+K ++ + +F ++
Sbjct: 240 PEMAFCDLEGDQDLAEAFLKYIFKFVLENCPEDLQFFNERIDKTVLSTAENIVNSEFGRI 299
Query: 332 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ 391
+Y++AIELL KA ++FEF V+WG DLQSEHERYL EE F PVIV++YPK IKAFYMR
Sbjct: 300 TYSEAIELLEKADRQFEFPVEWGVDLQSEHERYLAEELFKK-PVIVTNYPKTIKAFYMRL 358
Query: 392 NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVP 451
+D+ +TV+AMD+L P+IGE+IGGSQREERL+ L R+ E +N D WWYLDLR YGSVP
Sbjct: 359 DDNNKTVSAMDILAPKIGEIIGGSQREERLDVLIQRMQEQGMNPDDLWWYLDLRRYGSVP 418
Query: 452 HAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
HAGFGLGFERLVQF TG+ NIRD IPFPRTP S +F
Sbjct: 419 HAGFGLGFERLVQFMTGMTNIRDVIPFPRTPLSADF 454
|
Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| 224093120 | 578 | predicted protein [Populus trichocarpa] | 1.0 | 0.842 | 0.889 | 0.0 | |
| 224133182 | 574 | predicted protein [Populus trichocarpa] | 1.0 | 0.848 | 0.876 | 0.0 | |
| 359495974 | 584 | PREDICTED: asparaginyl-tRNA synthetase, | 0.997 | 0.832 | 0.870 | 0.0 | |
| 449458950 | 562 | PREDICTED: asparagine--tRNA ligase, chlo | 0.997 | 0.864 | 0.831 | 0.0 | |
| 2664210 | 566 | asparaginyl-tRNA synthetase [Arabidopsis | 1.0 | 0.860 | 0.831 | 0.0 | |
| 15236037 | 567 | asparaginyl-tRNA synthetase [Arabidopsis | 1.0 | 0.858 | 0.831 | 0.0 | |
| 297804454 | 567 | hypothetical protein ARALYDRAFT_914989 [ | 1.0 | 0.858 | 0.831 | 0.0 | |
| 356514300 | 551 | PREDICTED: asparaginyl-tRNA synthetase, | 0.991 | 0.876 | 0.824 | 0.0 | |
| 356565357 | 550 | PREDICTED: asparaginyl-tRNA synthetase, | 0.991 | 0.878 | 0.824 | 0.0 | |
| 357476849 | 565 | Asparaginyl-tRNA synthetase [Medicago tr | 0.987 | 0.851 | 0.801 | 0.0 |
| >gi|224093120|ref|XP_002309798.1| predicted protein [Populus trichocarpa] gi|222852701|gb|EEE90248.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/487 (88%), Positives = 464/487 (95%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
+G++VGEFRKKLKI D+KGGP+EGLDRVG IVV GWVRTLR QSSVTFIEVNDGSCLSN
Sbjct: 92 VGNRVGEFRKKLKIADIKGGPDEGLDRVGKTIVVMGWVRTLRVQSSVTFIEVNDGSCLSN 151
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
MQCVM +AEGYDQV+SGLITTGASI +QG VV SQGSKQKVELKVNKIVLVGKSDPSYP
Sbjct: 152 MQCVMGLEAEGYDQVESGLITTGASILVQGTVVESQGSKQKVELKVNKIVLVGKSDPSYP 211
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDC
Sbjct: 212 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDC 271
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIP S+E A SPVD IPKTKDGLIDWSQDFF KPAFLTVSGQLNAETYA
Sbjct: 272 EGAGEQFCVTTLIPGSQEVANSPVDRIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYA 331
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV++IL+N
Sbjct: 332 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLTDDMACATAYLQYVVKHILEN 391
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FFNTWIEKGIIDRL+ VAE+DFVQL+YTDA+ELL+KAKKKFEF V+WGCDLQSE
Sbjct: 392 CKEDMEFFNTWIEKGIIDRLTDVAEKDFVQLTYTDAVELLLKAKKKFEFPVEWGCDLQSE 451
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEEAFGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVPR+GELIGGSQREER
Sbjct: 452 HERYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIGGSQREER 511
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480
LEYLE RLDELKLN++S+WWYLDLR YGSVPHAGFGLGFERLVQFATG+ENIRDAIPFPR
Sbjct: 512 LEYLEDRLDELKLNKESFWWYLDLRRYGSVPHAGFGLGFERLVQFATGLENIRDAIPFPR 571
Query: 481 TPGSVEF 487
PGS EF
Sbjct: 572 VPGSAEF 578
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133182|ref|XP_002327980.1| predicted protein [Populus trichocarpa] gi|222837389|gb|EEE75768.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/487 (87%), Positives = 462/487 (94%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
+G++VGEFR+KLKI D+KGGP+EGLDRVG I+V GWVRTLR QSSVTFIEVNDGSCLSN
Sbjct: 88 IGNRVGEFRRKLKIADIKGGPDEGLDRVGKTIIVMGWVRTLRVQSSVTFIEVNDGSCLSN 147
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVM +AEGYDQV+SGL+TTGASIW+QG VV SQGSKQKVELKV KIV VGKSDPSYP
Sbjct: 148 LQCVMDLEAEGYDQVESGLVTTGASIWMQGTVVKSQGSKQKVELKVIKIVAVGKSDPSYP 207
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDC
Sbjct: 208 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDC 267
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIP S+EAA SPVD IPKTKDGLIDWSQDFF KPAFLTVSGQLNAETYA
Sbjct: 268 EGAGEQFCVTTLIPGSQEAANSPVDGIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYA 327
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVVR+IL+N
Sbjct: 328 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVRHILEN 387
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FFNTWIEKGIIDRLS V E+DFVQL+YTDAIELL+KAKKKFEF ++WGCDLQSE
Sbjct: 388 CKEDMEFFNTWIEKGIIDRLSDVVEKDFVQLTYTDAIELLLKAKKKFEFPLEWGCDLQSE 447
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEE FGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVPR+GELIGGSQREER
Sbjct: 448 HERYITEEVFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIGGSQREER 507
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480
LEY+E RLDELKLN++S+WWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPR
Sbjct: 508 LEYIEDRLDELKLNKESFWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPR 567
Query: 481 TPGSVEF 487
PGS EF
Sbjct: 568 VPGSAEF 574
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495974|ref|XP_003635124.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like isoform 2 [Vitis vinifera] gi|297744376|emb|CBI37350.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/486 (87%), Positives = 458/486 (94%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G KVGEFRK+L++VD+KGGP+EGLDR+G + V GWVRTLR QSSV FIEVNDGSCLSNM
Sbjct: 99 GEKVGEFRKRLRVVDIKGGPDEGLDRLGQTLAVKGWVRTLRVQSSVIFIEVNDGSCLSNM 158
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVM SDA+GYDQV+SG ITTGAS+ IQG +V SQGSKQKVELKV KIV VGKSDPS+PI
Sbjct: 159 QCVMNSDADGYDQVESGSITTGASVSIQGTLVASQGSKQKVELKVLKIVTVGKSDPSFPI 218
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+WISSPIITASDCE
Sbjct: 219 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWISSPIITASDCE 278
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIPSSREA +S VDAIPK KDGLIDWSQDFF KPAFLTVSGQLNAETYAT
Sbjct: 279 GAGEQFCVTTLIPSSREATDSTVDAIPKAKDGLIDWSQDFFGKPAFLTVSGQLNAETYAT 338
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV YIL+NC
Sbjct: 339 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVTYILENC 398
Query: 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361
KEDM+FFNTWIEKGII+RLS VAE++FVQL+YTDA+ELL++A KKFEF VKWGCDLQSEH
Sbjct: 399 KEDMEFFNTWIEKGIINRLSDVAEKNFVQLTYTDAVELLLRANKKFEFPVKWGCDLQSEH 458
Query: 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 421
ERY+TE AFGGCPVI+ DYPK+IKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 459 ERYITEVAFGGCPVIIRDYPKDIKAFYMRRNDDGKTVAAMDMLVPRVGELIGGSQREERL 518
Query: 422 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
EYLE RLD+LKL++DSYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPRT
Sbjct: 519 EYLEERLDDLKLSKDSYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRT 578
Query: 482 PGSVEF 487
PGS EF
Sbjct: 579 PGSAEF 584
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458950|ref|XP_004147209.1| PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449504980|ref|XP_004162346.1| PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/486 (83%), Positives = 451/486 (92%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G KVGEFRKKL+I ++KGG +EG+DR+G VV GWVRTLR QSSVTF+EVNDGSC+SNM
Sbjct: 77 GEKVGEFRKKLRISEIKGGRDEGVDRLGQTFVVMGWVRTLRVQSSVTFMEVNDGSCISNM 136
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCV+ S EGYDQV+SGLITTGAS+W++G VV SQGSKQKVELK+ K+++VGKSDPS+P+
Sbjct: 137 QCVIDSTTEGYDQVESGLITTGASVWVEGVVVASQGSKQKVELKLQKVIVVGKSDPSFPV 196
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKK+VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 197 QKKKVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 256
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIPSS E A S V +IPKTK+G IDWSQDFF KPAFLTVSGQLNAETYAT
Sbjct: 257 GAGEQFCVTTLIPSSGEPARSDVGSIPKTKEGFIDWSQDFFGKPAFLTVSGQLNAETYAT 316
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDM+CATAYLQYVVR+IL+NC
Sbjct: 317 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMSCATAYLQYVVRHILENC 376
Query: 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361
KED+DFFNTWIEKGIIDRL+ + E DFVQL YTDAIELL++A KKFE+ VKWG DLQSEH
Sbjct: 377 KEDLDFFNTWIEKGIIDRLTNLVENDFVQLPYTDAIELLLRANKKFEYPVKWGSDLQSEH 436
Query: 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 421
ERY+TE AFGGCPVI+ DYP++IKAFYMRQNDDG+TVAAMDMLVP+IGELIGGSQREERL
Sbjct: 437 ERYITEVAFGGCPVIIRDYPRDIKAFYMRQNDDGKTVAAMDMLVPKIGELIGGSQREERL 496
Query: 422 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
+YLE RLD+LKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRDAIPFPR+
Sbjct: 497 DYLEARLDDLKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDAIPFPRS 556
Query: 482 PGSVEF 487
PGS EF
Sbjct: 557 PGSAEF 562
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2664210|emb|CAA10904.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/487 (83%), Positives = 447/487 (91%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 80 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 139
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 140 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 199
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 200 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 259
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 260 EGAGEQFCVTTLIPSSHEYTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 319
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 320 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 379
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 380 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 439
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 440 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 499
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 500 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 559
Query: 481 TPGSVEF 487
TP S EF
Sbjct: 560 TPASAEF 566
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236037|ref|NP_193462.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] gi|55584148|sp|O48593.3|SYNO_ARATH RecName: Full=Asparagine--tRNA ligase, chloroplastic/mitochondrial; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; Flags: Precursor gi|19310458|gb|AAL84964.1| AT4g17300/dl4685w [Arabidopsis thaliana] gi|332658474|gb|AEE83874.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/487 (83%), Positives = 447/487 (91%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 141 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 440
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560
Query: 481 TPGSVEF 487
TP S EF
Sbjct: 561 TPASAEF 567
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804454|ref|XP_002870111.1| hypothetical protein ARALYDRAFT_914989 [Arabidopsis lyrata subsp. lyrata] gi|297315947|gb|EFH46370.1| hypothetical protein ARALYDRAFT_914989 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/487 (83%), Positives = 446/487 (91%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKLKI +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLKIAEVKGGADEGLGRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVM SDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VGK D SYP
Sbjct: 141 LQCVMNSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGKCDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA +KF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEVLLKANRKFDFPVKWGLDLQSE 440
Query: 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 420
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 421 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560
Query: 481 TPGSVEF 487
TP S EF
Sbjct: 561 TPASAEF 567
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514300|ref|XP_003525844.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/485 (82%), Positives = 445/485 (91%), Gaps = 2/485 (0%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
++V +FR+KL++ ++K G +G D G +VV GWVRTLR QS VTF+E+NDGSCLSNMQ
Sbjct: 69 NRVQQFRRKLRVSEIKEG--DGADVFGRNLVVQGWVRTLRIQSIVTFLEINDGSCLSNMQ 126
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ S+AEGYDQV+SGL+TTGAS+W+QG VV SQGSKQKVELKVNKIVL+GKSDPS+PIQ
Sbjct: 127 CVLNSEAEGYDQVESGLVTTGASVWVQGVVVKSQGSKQKVELKVNKIVLIGKSDPSFPIQ 186
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKR SREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 187 KKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 246
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA 242
AGEQFCVTTLIPSS E +SPVDAIPKT DGLIDWSQDFF KPAFLTVSGQLN ETYAT+
Sbjct: 247 AGEQFCVTTLIPSSHETTDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATS 306
Query: 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R++LDNCK
Sbjct: 307 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHVLDNCK 366
Query: 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 362
EDM+FF+TWI KGIIDRLS VA++D VQ++YT+AI+LL A KKFEF VKWG DLQSEHE
Sbjct: 367 EDMEFFDTWINKGIIDRLSDVADKDVVQITYTEAIDLLSGANKKFEFPVKWGSDLQSEHE 426
Query: 363 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 422
RY+TEEAF GCPVI+ DYPK+IKAFYMRQNDDGRTVAAMDMLVP IGELIGGSQREERLE
Sbjct: 427 RYITEEAFSGCPVIIRDYPKDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQREERLE 486
Query: 423 YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482
YLE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRD IPFPRTP
Sbjct: 487 YLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQFATGMDNIRDVIPFPRTP 546
Query: 483 GSVEF 487
GS EF
Sbjct: 547 GSAEF 551
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565357|ref|XP_003550908.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/485 (82%), Positives = 445/485 (91%), Gaps = 2/485 (0%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
++V +FR+KL++ ++K G +G D +G +VV GWVRTLR QSSVTF+E+NDGSCLSNMQ
Sbjct: 68 NRVQQFRRKLRVSEIKEG--DGADVLGRNLVVQGWVRTLRIQSSVTFLEINDGSCLSNMQ 125
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ S+AEGYDQV+SGL+TTGAS+W+QG VV SQGSKQKVELKVNKIVL+GKSDPS+PIQ
Sbjct: 126 CVLNSEAEGYDQVESGLVTTGASVWVQGVVVKSQGSKQKVELKVNKIVLIGKSDPSFPIQ 185
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKR SREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 186 KKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 245
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA 242
AGEQFCVTTLIPSS E +SPVDAIPKT DGLIDWSQDFF KPAFLTVSGQLN ETYATA
Sbjct: 246 AGEQFCVTTLIPSSHETNDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATA 305
Query: 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R++LDNCK
Sbjct: 306 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHVLDNCK 365
Query: 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 362
EDM+FF+ WI KGIIDRLS VA++D VQ++YT+AI+LL A KKFEF VKWG DLQSEHE
Sbjct: 366 EDMEFFDAWINKGIIDRLSDVADKDVVQITYTEAIDLLSGANKKFEFPVKWGSDLQSEHE 425
Query: 363 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 422
RY+TEE F GCPVI+ DYPK+IKAFYMRQNDDGRTVAAMDMLVP IGELIGGSQREERLE
Sbjct: 426 RYITEEVFSGCPVIIRDYPKDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQREERLE 485
Query: 423 YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482
YLE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRD IPFPRTP
Sbjct: 486 YLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQFATGMDNIRDVIPFPRTP 545
Query: 483 GSVEF 487
GS EF
Sbjct: 546 GSAEF 550
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476849|ref|XP_003608710.1| Asparaginyl-tRNA synthetase [Medicago truncatula] gi|355509765|gb|AES90907.1| Asparaginyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/504 (80%), Positives = 450/504 (89%), Gaps = 23/504 (4%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+KV +FRKKLK+ DVK G D +G +V+ GWVRTLR QSSVTF+E+NDGSCLSNMQ
Sbjct: 66 NKVPQFRKKLKVSDVKDGQ---FDSLGNTLVLQGWVRTLRLQSSVTFLEINDGSCLSNMQ 122
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ ++ EGYDQV+SGLITTGAS+W+QG VV SQG+KQKVELK+NKIVLVGKSDPS+PIQ
Sbjct: 123 CVLDTEVEGYDQVESGLITTGASVWVQGIVVKSQGTKQKVELKLNKIVLVGKSDPSFPIQ 182
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKRVSREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 183 KKRVSREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 242
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA 242
AGEQFCVTTLIP+S E A+SPVDAIPK D LIDWSQDFF KPAFLTVSGQLNAETYATA
Sbjct: 243 AGEQFCVTTLIPNSHETADSPVDAIPKN-DKLIDWSQDFFGKPAFLTVSGQLNAETYATA 301
Query: 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R+ILDNCK
Sbjct: 302 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHILDNCK 361
Query: 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 362
EDM+FFNTWI+KGIIDRLS VAE+D +Q++YT+A++LL +A KKFEF VKWGCDLQSEHE
Sbjct: 362 EDMEFFNTWIDKGIIDRLSDVAEKDVLQITYTEAVDLLSRANKKFEFPVKWGCDLQSEHE 421
Query: 363 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR--------------- 407
RY+TEEAFGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVP+
Sbjct: 422 RYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPKLGALIVCQCWAGEPR 481
Query: 408 ----IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLV 463
IGELIGGSQREERLE+LE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLV
Sbjct: 482 DYITIGELIGGSQREERLEHLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLV 541
Query: 464 QFATGVENIRDAIPFPRTPGSVEF 487
QFATG++NIRD IPFPRTPGS EF
Sbjct: 542 QFATGMDNIRDVIPFPRTPGSAEF 565
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| TAIR|locus:2130804 | 567 | NS1 [Arabidopsis thaliana (tax | 0.997 | 0.857 | 0.806 | 6.4e-218 | |
| TIGR_CMR|GSU_1156 | 461 | GSU_1156 "asparaginyl-tRNA syn | 0.913 | 0.965 | 0.557 | 3.3e-134 | |
| TIGR_CMR|SO_2218 | 466 | SO_2218 "asparaginyl-tRNA synt | 0.930 | 0.972 | 0.540 | 3.1e-131 | |
| TAIR|locus:2014005 | 571 | SYNC3 [Arabidopsis thaliana (t | 0.572 | 0.488 | 0.591 | 6.1e-131 | |
| TAIR|locus:2165001 | 572 | SYNC1 [Arabidopsis thaliana (t | 0.570 | 0.486 | 0.607 | 1.9e-127 | |
| TIGR_CMR|BA_4802 | 463 | BA_4802 "asparaginyl-tRNA synt | 0.915 | 0.963 | 0.516 | 1.4e-126 | |
| UNIPROTKB|P0A8M0 | 466 | asnS "asparaginyl-tRNA synthet | 0.930 | 0.972 | 0.525 | 2.3e-126 | |
| TIGR_CMR|CPS_2591 | 466 | CPS_2591 "asparaginyl-tRNA syn | 0.911 | 0.952 | 0.522 | 3.4e-125 | |
| UNIPROTKB|Q9KSF9 | 466 | asnS "Asparagine--tRNA ligase" | 0.911 | 0.952 | 0.529 | 1.3e-123 | |
| TIGR_CMR|VC_1297 | 466 | VC_1297 "asparaginyl-tRNA synt | 0.911 | 0.952 | 0.529 | 1.3e-123 |
| TAIR|locus:2130804 NS1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2105 (746.1 bits), Expect = 6.4e-218, P = 6.4e-218
Identities = 392/486 (80%), Positives = 434/486 (89%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN+
Sbjct: 82 GSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSNL 141
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYPI
Sbjct: 142 QCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYPI 201
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDCE
Sbjct: 202 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDCE 261
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYAT
Sbjct: 262 GAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYAT 321
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDNC
Sbjct: 322 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDNC 381
Query: 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361
KEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSEH
Sbjct: 382 KEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSEH 441
Query: 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXX 421
ERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQ
Sbjct: 442 ERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREERL 501
Query: 422 XXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
KLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPRT
Sbjct: 502 EVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPRT 561
Query: 482 PGSVEF 487
P S EF
Sbjct: 562 PASAEF 567
|
|
| TIGR_CMR|GSU_1156 GSU_1156 "asparaginyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 256/459 (55%), Positives = 322/459 (70%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G ++V GWVRT R V F+ VNDGSCL+++Q V Y +++ I TGA++ +
Sbjct: 17 GTEVIVKGWVRTSRVGKGVAFLAVNDGSCLASLQVVAEPGLANYHELRG--IGTGAAVAV 74
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G V S + Q VEL K+V+VG +D YP+QKKR + E+LRT AHLRPR+NTFGAV
Sbjct: 75 RGIVAESPAAGQAVELHATKVVVVGGADEQYPLQKKRHTFEYLRTIAHLRPRSNTFGAVF 134
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVR++LA A H+FF E GF+++ +PIIT SDCEGAGE F VTTL PS+ P
Sbjct: 135 RVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRVTTLDPSA-----------P 183
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
DG +D+SQDFF A LTVSGQL E +A A S++YTFGPTFRAENSNT RH AEFW
Sbjct: 184 PMADGAVDFSQDFFAAQAGLTVSGQLEGELFAQAFSDIYTFGPTFRAENSNTPRHAAEFW 243
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
MIEPE+AFADL+DD A A + +Y+ R++LDNC EDM FFN +++G++ R+ VA F
Sbjct: 244 MIEPEMAFADLRDDAALAEDFFRYLCRHVLDNCAEDMAFFNEHVDRGLLARVEQVAGSSF 303
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
+ Y AIE L +A FE+ V+WG DLQ+EHERYLTE+ GG PV V +YP+EIKAFY
Sbjct: 304 AMMEYGVAIEHLKRAAVPFEYPVEWGLDLQTEHERYLTEQVVGG-PVFVVNYPQEIKAFY 362
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
MR+NDDGRTVAAMD+LVP++GE+IGGSQ + +S WWYLD R +G
Sbjct: 363 MRRNDDGRTVAAMDLLVPKVGEIIGGSQREERYDLLESRMREGGIAPESLWWYLDSRRWG 422
Query: 449 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
S PHAGFGLGFERL+ + TG+ENIRD IPFPRTP EF
Sbjct: 423 STPHAGFGLGFERLIMYLTGMENIRDVIPFPRTPRHAEF 461
|
|
| TIGR_CMR|SO_2218 SO_2218 "asparaginyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1287 (458.1 bits), Expect = 3.1e-131, P = 3.1e-131
Identities = 253/468 (54%), Positives = 320/468 (68%)
Query: 23 EGLDRVGLMIVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+G VG + V GWVRT R +++ ++F+ V DGSC + +Q V+ + E YD L T
Sbjct: 11 KGEHAVGSTVTVRGWVRTRRDSKAGISFLAVYDGSCFNPIQGVVPNSLENYDNEVLKL-T 69
Query: 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVG-KSDP-SYPIQKKRVSREFLRTKAHLRP 139
G S+ + G++V S G+ Q EL+V + + G DP +YP+ KR S E LR AHLRP
Sbjct: 70 AGCSVIVTGDIVESPGAGQAYELQVTAVEVTGWVEDPDTYPMAAKRHSIEHLRELAHLRP 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
RTN GAVARVRN L+ A H+F+ ENGF+W+S+P+ITASDCEGAGE F V+TL
Sbjct: 130 RTNIIGAVARVRNCLSQAIHRFYHENGFVWVSTPLITASDCEGAGEMFRVSTL------- 182
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
++ +P+T DG +D+ +DFF K AFLTVSGQLN ETYA ALS +YTFGPTFRAENSN
Sbjct: 183 ---DMENLPRTSDGKVDYDKDFFGKEAFLTVSGQLNGETYACALSKIYTFGPTFRAENSN 239
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
TSRHLAEFWM+EPE+AFA L D A L+Y +L +D+ FF ++K +I+R
Sbjct: 240 TSRHLAEFWMVEPEVAFATLNDIAGLAEGMLKYAFNAVLTERMDDLQFFAQHVDKTVIER 299
Query: 320 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD 379
L + DF Q+ YTDA+E+L K+ ++FEF V WG DL SEHERYL EE F PV+V +
Sbjct: 300 LQSFVSSDFAQVDYTDAVEILQKSGREFEFPVSWGIDLSSEHERYLAEEHFKA-PVVVKN 358
Query: 380 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYW 439
YPK+IKAFYMR N+DG+TVAAMD+L P IGE+IGGSQ LN++ YW
Sbjct: 359 YPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYW 418
Query: 440 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
WY DLR YG+VPHAGFGLGFERLV + TGV NIRD IPFPR P + F
Sbjct: 419 WYRDLRRYGTVPHAGFGLGFERLVSYVTGVSNIRDVIPFPRAPRTANF 466
|
|
| TAIR|locus:2014005 SYNC3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 6.1e-131, Sum P(2) = 6.1e-131
Identities = 168/284 (59%), Positives = 210/284 (73%)
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+PK DG ID+S DFF + AFLTVSGQL ETYA ALS+VYTFGPTFRAENS+TSRHLAE
Sbjct: 288 LPKN-DGKIDYSNDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAE 346
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
FWM+EPE+AFAD+ DDM CA AY++Y+ ++++D C +DM+ + +++G RL+ VA+
Sbjct: 347 FWMVEPEIAFADIHDDMNCAEAYVKYMCKWLMDKCGDDMELMDKNVDEGCTKRLNMVAKA 406
Query: 327 DFVQLSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 382
F +++YT+AIE L KA K F+ V+WG DL SEHERYLTE F P+IV +YPK
Sbjct: 407 SFKRVTYTEAIERLEKAVAQGKVVFDNKVEWGIDLASEHERYLTEVEFDQKPIIVYNYPK 466
Query: 383 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYL 442
IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ L + Y WYL
Sbjct: 467 GIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPMEPYEWYL 526
Query: 443 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486
DLR YG+V H GFGLGFER++QFATG++NIRD IPFPR PG +
Sbjct: 527 DLRRYGTVKHCGFGLGFERMIQFATGIDNIRDVIPFPRYPGKAD 570
|
|
| TAIR|locus:2165001 SYNC1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.9e-127, Sum P(2) = 1.9e-127
Identities = 172/283 (60%), Positives = 208/283 (73%)
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+PK KDG ID+S+DFF + AFLTVSGQL ETYA ALSNVYTFGPTFRAENS+TSRHLAE
Sbjct: 291 LPK-KDGNIDYSKDFFGRQAFLTVSGQLQVETYACALSNVYTFGPTFRAENSHTSRHLAE 349
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
FWM+EPE+AFADL+DDM CA AY++Y+ ++L+ C DM+ + G IDRL VA
Sbjct: 350 FWMVEPEIAFADLEDDMNCAEAYVKYMCNWLLEKCYADMELMAKNFDSGCIDRLKLVAST 409
Query: 327 DFVQLSYTDAIELLIKAK---KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 383
F +++YT AIELL +A K+F+ V+WG DL SEHERYLTE F P+IV +YPK
Sbjct: 410 PFGRITYTKAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQK-PLIVYNYPKG 468
Query: 384 IKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLD 443
IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ L + Y WYLD
Sbjct: 469 IKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKKRIEEMGLPIEPYEWYLD 528
Query: 444 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486
LR YG+V H GFGLGFER++ FATG++NIRD IPFPR PG +
Sbjct: 529 LRRYGTVKHCGFGLGFERMILFATGLDNIRDVIPFPRYPGKAD 571
|
|
| TIGR_CMR|BA_4802 BA_4802 "asparaginyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 237/459 (51%), Positives = 320/459 (69%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G + V+GW+R LR + FIE+NDGS ++Q V ++ + + ++ + +S+ +
Sbjct: 18 GQTVQVSGWIRNLRDSKAFGFIELNDGSFFKSVQIVFDTELDNFKEIAK--LPLSSSVKV 75
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G V+ + G+KQ E+K KI + G SD YP+QKKR + E+LRT AHLRPRTN F A
Sbjct: 76 EGKVIATPGAKQPFEIKAEKIDIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNAFSATF 135
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVR+ A+A H+FFQE GF+ + +PIIT SD EGAGE F VTT ++ +P
Sbjct: 136 RVRSIAAFAIHQFFQERGFVHVHTPIITGSDTEGAGEMFRVTT----------QDLNNVP 185
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
K +DG +D S+DFF K LTVSGQLNAE YA A +VYTFGPTFRAENSNT+RH AEFW
Sbjct: 186 KGEDGQVDESKDFFGKETNLTVSGQLNAEAYALAFRDVYTFGPTFRAENSNTTRHAAEFW 245
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M+EPE+AFA+L D M L+Y ++Y+L++ E+M+FFN++++K +++R++ V DF
Sbjct: 246 MVEPEIAFAELGDVMNLTEDMLKYAMKYVLEHAPEEMEFFNSFVDKTVLERMNNVINSDF 305
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
+++YT+AI++L ++ F++ V+WG DLQ+EHERYL+EE F PV V+DYPK+IKAFY
Sbjct: 306 GRITYTEAIKVLQESGADFKYPVEWGIDLQTEHERYLSEEIFKR-PVFVTDYPKDIKAFY 364
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
MR NDDG+TVAA D+LVP IGELIGGSQ +N + YWWYL+LR YG
Sbjct: 365 MRLNDDGKTVAATDLLVPGIGELIGGSQREERMDVLVDRIKELGMNEEDYWWYLELRKYG 424
Query: 449 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
HAGFGLGFER + + TG+ NIRD IPFPRTPGS EF
Sbjct: 425 GTKHAGFGLGFERFLMYITGMANIRDVIPFPRTPGSSEF 463
|
|
| UNIPROTKB|P0A8M0 asnS "asparaginyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
Identities = 246/468 (52%), Positives = 316/468 (67%)
Query: 23 EGLDRVGLMIVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+G V + V GWVRT R +++ ++F+ V DGSC +Q V+ + Y++ L T
Sbjct: 11 QGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRL-T 69
Query: 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVG-KSDP-SYPIQKKRVSREFLRTKAHLRP 139
TG S+ + G VV S G Q+ E++ +K+ + G DP +YP+ KR S E+LR AHLRP
Sbjct: 70 TGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRP 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
RTN GAVARVR+ LA A H+FF E GF W+S+P+ITASD EGAGE F V+TL
Sbjct: 130 RTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL------- 182
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
++ +P+ G +D+ +DFF K +FLTVSGQLN ETYA ALS +YTFGPTFRAENSN
Sbjct: 183 ---DLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSN 239
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
TSRHLAEFWM+EPE+AFA+L D A A L+YV + +L+ +DM FF ++K + R
Sbjct: 240 TSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSR 299
Query: 320 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD 379
L E DF Q+ YTDA+ +L +KFE V WG DL SEHERYL EE F PV+V +
Sbjct: 300 LERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKA-PVVVKN 358
Query: 380 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYW 439
YPK+IKAFYMR N+DG+TVAAMD+L P IGE+IGGSQ LN++ YW
Sbjct: 359 YPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYW 418
Query: 440 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
WY DLR YG+VPH+GFGLGFERL+ + TGV+N+RD IPFPRTP + F
Sbjct: 419 WYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF 466
|
|
| TIGR_CMR|CPS_2591 CPS_2591 "asparaginyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1230 (438.0 bits), Expect = 3.4e-125, P = 3.4e-125
Identities = 240/459 (52%), Positives = 315/459 (68%)
Query: 32 IVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
I + GW+RT R +++ ++F+ ++DGSC +Q ++ ++ + Y+ L TTG S+ + G
Sbjct: 20 ITIHGWIRTRRDSKAGISFLALHDGSCFDAIQAIVPNELDNYESDVLKL-TTGCSVKVTG 78
Query: 91 NVVPSQGSKQKVELKVNKIVLVG-KSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+V S G Q E++ ++ ++G DP +YP+ KR S EFLR +AHLRPRTN GAV
Sbjct: 79 ILVESPGKGQAFEIQATEVEVLGFVEDPDTYPMAAKRHSIEFLREQAHLRPRTNIGGAVT 138
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVRN LA A H+F G+ WIS+P+IT SDCEGAGE F V+TL ++ +P
Sbjct: 139 RVRNCLAQAVHRFLHSKGYFWISTPLITGSDCEGAGEMFRVSTL----------DMENLP 188
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
+ +G +D+++DFF K FLTVSGQLN ETY ALS VYTFGPTFRAENSNT+RHLAEFW
Sbjct: 189 RNDEGKVDYNKDFFGKETFLTVSGQLNVETYCNALSKVYTFGPTFRAENSNTTRHLAEFW 248
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M+EPE+AFADL D A L+YV + +L+ +DM FF ++K ++DRL++V DF
Sbjct: 249 MVEPEIAFADLSDAADLAEEMLKYVFKAVLEERPDDMAFFQQRVDKTVLDRLNSVINTDF 308
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
V+L YTDAI +L KKFE V WG DL SEHERYL EE F G PV++ +YPK+IK+FY
Sbjct: 309 VRLDYTDAITILENCGKKFENQVSWGVDLNSEHERYLAEEHFNG-PVVLQNYPKDIKSFY 367
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
MR NDDG+TVAAMD+L P IGE+IGGSQ L+ Y WY DLR YG
Sbjct: 368 MRLNDDGKTVAAMDILAPGIGEIIGGSQREERLDVLDSRLEEMGLDIADYGWYRDLRRYG 427
Query: 449 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
+VPH+GFGLGFERLV +ATG++N+RD IPFPRTP + F
Sbjct: 428 TVPHSGFGLGFERLVAYATGMQNVRDVIPFPRTPNNAAF 466
|
|
| UNIPROTKB|Q9KSF9 asnS "Asparagine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
Identities = 243/459 (52%), Positives = 309/459 (67%)
Query: 32 IVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ V GW+RT R +++ ++F+ + DGSC + +Q V+ ++ YD L TTG S+ + G
Sbjct: 20 VTVRGWIRTRRDSKAGISFLAIYDGSCFNPIQAVVPNNLNNYDNEVLKL-TTGCSVEVTG 78
Query: 91 NVVPSQGSKQKVELKVNKIVLVG--KSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+V S S Q EL + + +VG + +YP+ K R S E+LR AHLRPRTN GAVA
Sbjct: 79 KIVESPASGQAFELAASDVKVVGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVA 138
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVRN LA A H+F+ E G+ W+S+P+ITASD EGAGE F V+TL ++ +P
Sbjct: 139 RVRNCLAQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVSTL----------DMENLP 188
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
+T G +D++QDFF K FLTVSGQLNAE YA A+S VYTFGPTFRAENSNTSRHLAEFW
Sbjct: 189 RTDAGKVDYNQDFFGKETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFW 248
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M+EPE+AFADL A L+YV + +L ++D++FFN I +I RL E DF
Sbjct: 249 MVEPEVAFADLNTVAKLAEDMLKYVFKAVLAERRDDLEFFNDRINNEVIARLEQFVESDF 308
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
Q+ YTDAIE+L K FEF V+WG DL SEHER+L EE F PVIV +YPK+IKAFY
Sbjct: 309 AQVDYTDAIEILKNCGKTFEFPVEWGIDLASEHERFLAEEHFKA-PVIVKNYPKDIKAFY 367
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
MR N+DG+TVAAMD+L P IGE+IGGSQ ++ + WY DLR YG
Sbjct: 368 MRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDLRRYG 427
Query: 449 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
+VPHAGFGLGFERLV + TG+ N+RD IPFPRTP S F
Sbjct: 428 TVPHAGFGLGFERLVSYVTGMGNVRDVIPFPRTPRSASF 466
|
|
| TIGR_CMR|VC_1297 VC_1297 "asparaginyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
Identities = 243/459 (52%), Positives = 309/459 (67%)
Query: 32 IVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ V GW+RT R +++ ++F+ + DGSC + +Q V+ ++ YD L TTG S+ + G
Sbjct: 20 VTVRGWIRTRRDSKAGISFLAIYDGSCFNPIQAVVPNNLNNYDNEVLKL-TTGCSVEVTG 78
Query: 91 NVVPSQGSKQKVELKVNKIVLVG--KSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+V S S Q EL + + +VG + +YP+ K R S E+LR AHLRPRTN GAVA
Sbjct: 79 KIVESPASGQAFELAASDVKVVGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVA 138
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVRN LA A H+F+ E G+ W+S+P+ITASD EGAGE F V+TL ++ +P
Sbjct: 139 RVRNCLAQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVSTL----------DMENLP 188
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
+T G +D++QDFF K FLTVSGQLNAE YA A+S VYTFGPTFRAENSNTSRHLAEFW
Sbjct: 189 RTDAGKVDYNQDFFGKETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFW 248
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M+EPE+AFADL A L+YV + +L ++D++FFN I +I RL E DF
Sbjct: 249 MVEPEVAFADLNTVAKLAEDMLKYVFKAVLAERRDDLEFFNDRINNEVIARLEQFVESDF 308
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
Q+ YTDAIE+L K FEF V+WG DL SEHER+L EE F PVIV +YPK+IKAFY
Sbjct: 309 AQVDYTDAIEILKNCGKTFEFPVEWGIDLASEHERFLAEEHFKA-PVIVKNYPKDIKAFY 367
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYG 448
MR N+DG+TVAAMD+L P IGE+IGGSQ ++ + WY DLR YG
Sbjct: 368 MRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDLRRYG 427
Query: 449 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
+VPHAGFGLGFERLV + TG+ N+RD IPFPRTP S F
Sbjct: 428 TVPHAGFGLGFERLVSYVTGMGNVRDVIPFPRTPRSASF 466
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A3D3V7 | SYN_SHEB5 | 6, ., 1, ., 1, ., 2, 2 | 0.5662 | 0.9301 | 0.9721 | yes | no |
| O48593 | SYNO_ARATH | 6, ., 1, ., 1, ., 2, 2 | 0.8316 | 1.0 | 0.8589 | yes | no |
| B1XKH1 | SYN_SYNP2 | 6, ., 1, ., 1, ., 2, 2 | 0.5579 | 0.9117 | 0.9652 | yes | no |
| P43829 | SYN_HAEIN | 6, ., 1, ., 1, ., 2, 2 | 0.5509 | 0.9486 | 0.9892 | yes | no |
| B0UTU8 | SYN_HAES2 | 6, ., 1, ., 1, ., 2, 2 | 0.5572 | 0.9199 | 0.9593 | yes | no |
| A1S684 | SYN_SHEAM | 6, ., 1, ., 1, ., 2, 2 | 0.5723 | 0.9158 | 0.9570 | yes | no |
| Q5QZ13 | SYN_IDILO | 6, ., 1, ., 1, ., 2, 2 | 0.5729 | 0.9117 | 0.9527 | yes | no |
| A3QE68 | SYN_SHELP | 6, ., 1, ., 1, ., 2, 2 | 0.5668 | 0.9178 | 0.9592 | yes | no |
| A1RK52 | SYN_SHESW | 6, ., 1, ., 1, ., 2, 2 | 0.5619 | 0.9301 | 0.9721 | yes | no |
| Q24MK1 | SYN_DESHY | 6, ., 1, ., 1, ., 2, 2 | 0.5726 | 0.9055 | 0.9524 | yes | no |
| P52276 | SYN_SYNY3 | 6, ., 1, ., 1, ., 2, 2 | 0.5908 | 0.9096 | 0.9588 | N/A | no |
| A8FVU8 | SYN_SHESH | 6, ., 1, ., 1, ., 2, 2 | 0.5560 | 0.9178 | 0.9592 | yes | no |
| Q97E56 | SYN_CLOAB | 6, ., 1, ., 1, ., 2, 2 | 0.5468 | 0.9158 | 0.9632 | yes | no |
| Q0HUL3 | SYN_SHESR | 6, ., 1, ., 1, ., 2, 2 | 0.5619 | 0.9301 | 0.9721 | yes | no |
| A0PY64 | SYN_CLONN | 6, ., 1, ., 1, ., 2, 2 | 0.5664 | 0.9158 | 0.9632 | yes | no |
| Q0HIB6 | SYN_SHESM | 6, ., 1, ., 1, ., 2, 2 | 0.5598 | 0.9301 | 0.9721 | yes | no |
| A7GB01 | SYN_CLOBL | 6, ., 1, ., 1, ., 2, 2 | 0.5570 | 0.9096 | 0.9568 | yes | no |
| A3DBI2 | SYN_CLOTH | 6, ., 1, ., 1, ., 2, 2 | 0.5660 | 0.9507 | 0.9978 | yes | no |
| B0JN99 | SYN_MICAN | 6, ., 1, ., 1, ., 2, 2 | 0.5899 | 0.8973 | 0.9625 | yes | no |
| Q3IGU4 | SYN_PSEHT | 6, ., 1, ., 1, ., 2, 2 | 0.5620 | 0.9096 | 0.9526 | yes | no |
| Q72G53 | SYN_DESVH | 6, ., 1, ., 1, ., 2, 2 | 0.5720 | 0.9096 | 0.9609 | yes | no |
| P58692 | SYN_NOSS1 | 6, ., 1, ., 1, ., 2, 2 | 0.5829 | 0.9240 | 0.9719 | yes | no |
| P58693 | SYN_CLOPE | 6, ., 1, ., 1, ., 2, 2 | 0.5579 | 0.9096 | 0.9526 | yes | no |
| A5UF16 | SYN_HAEIG | 6, ., 1, ., 1, ., 2, 2 | 0.5530 | 0.9486 | 0.9892 | yes | no |
| A4Y6E4 | SYN_SHEPC | 6, ., 1, ., 1, ., 2, 2 | 0.5619 | 0.9301 | 0.9721 | yes | no |
| A8MJ91 | SYN_ALKOO | 6, ., 1, ., 1, ., 2, 2 | 0.5468 | 0.9158 | 0.9632 | yes | no |
| A6WMP4 | SYN_SHEB8 | 6, ., 1, ., 1, ., 2, 2 | 0.5662 | 0.9301 | 0.9721 | yes | no |
| Q9CN06 | SYN_PASMU | 6, ., 1, ., 1, ., 2, 2 | 0.5467 | 0.9486 | 0.9892 | yes | no |
| A1V9B8 | SYN_DESVV | 6, ., 1, ., 1, ., 2, 2 | 0.5742 | 0.9096 | 0.9609 | yes | no |
| Q12MT5 | SYN_SHEDO | 6, ., 1, ., 1, ., 2, 2 | 0.5658 | 0.9199 | 0.9613 | yes | no |
| A5HZE1 | SYN_CLOBH | 6, ., 1, ., 1, ., 2, 2 | 0.5614 | 0.9096 | 0.9568 | yes | no |
| A0KXL6 | SYN_SHESA | 6, ., 1, ., 1, ., 2, 2 | 0.5555 | 0.9301 | 0.9721 | yes | no |
| Q0SQ51 | SYN_CLOPS | 6, ., 1, ., 1, ., 2, 2 | 0.5579 | 0.9096 | 0.9526 | yes | no |
| Q8DG51 | SYN_THEEB | 6, ., 1, ., 1, ., 2, 2 | 0.6017 | 0.9219 | 0.9718 | yes | no |
| Q081Q0 | SYN_SHEFN | 6, ., 1, ., 1, ., 2, 2 | 0.5595 | 0.9260 | 0.9678 | yes | no |
| Q8EEZ1 | SYN_SHEON | 6, ., 1, ., 1, ., 2, 2 | 0.5598 | 0.9301 | 0.9721 | yes | no |
| Q74E08 | SYN_GEOSL | 6, ., 1, ., 1, ., 2, 2 | 0.5564 | 0.9425 | 0.9956 | yes | no |
| Q73P19 | SYN_TREDE | 6, ., 1, ., 1, ., 2, 2 | 0.5686 | 0.9281 | 0.9556 | yes | no |
| Q6MEC9 | SYN_PARUW | 6, ., 1, ., 1, ., 2, 2 | 0.6004 | 0.9548 | 0.9957 | yes | no |
| A7FRK8 | SYN_CLOB1 | 6, ., 1, ., 1, ., 2, 2 | 0.5614 | 0.9096 | 0.9568 | yes | no |
| Q899M9 | SYN_CLOTE | 6, ., 1, ., 1, ., 2, 2 | 0.5460 | 0.9486 | 0.9978 | yes | no |
| A6LPI6 | SYN_CLOB8 | 6, ., 1, ., 1, ., 2, 2 | 0.5592 | 0.9096 | 0.9547 | yes | no |
| Q0TMF3 | SYN_CLOP1 | 6, ., 1, ., 1, ., 2, 2 | 0.5579 | 0.9096 | 0.9526 | yes | no |
| Q0I2M9 | SYN_HAES1 | 6, ., 1, ., 1, ., 2, 2 | 0.5572 | 0.9199 | 0.9593 | yes | no |
| A5UCB9 | SYN_HAEIE | 6, ., 1, ., 1, ., 2, 2 | 0.5488 | 0.9486 | 0.9892 | yes | no |
| A9KZ30 | SYN_SHEB9 | 6, ., 1, ., 1, ., 2, 2 | 0.5641 | 0.9301 | 0.9721 | yes | no |
| A5N4F7 | SYN_CLOK5 | 6, ., 1, ., 1, ., 2, 2 | 0.5394 | 0.9096 | 0.9568 | yes | no |
| B2UXS0 | SYN_CLOBA | 6, ., 1, ., 1, ., 2, 2 | 0.5592 | 0.9096 | 0.9547 | yes | no |
| Q8RH70 | SYN_FUSNN | 6, ., 1, ., 1, ., 2, 2 | 0.5400 | 0.9466 | 1.0 | yes | no |
| B2TI01 | SYN_CLOBB | 6, ., 1, ., 1, ., 2, 2 | 0.5592 | 0.9096 | 0.9547 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.22 | 0.979 |
| 3rd Layer | 6.1.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 487 | |||
| PLN02603 | 565 | PLN02603, PLN02603, asparaginyl-tRNA synthetase | 0.0 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 0.0 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 0.0 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 0.0 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 0.0 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 1e-171 | |
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 1e-153 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 1e-147 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 1e-77 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 1e-76 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 1e-52 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 1e-52 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 7e-33 | |
| cd04318 | 82 | cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-termina | 4e-30 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 2e-29 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 3e-23 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 1e-15 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 7e-15 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 8e-14 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 3e-12 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 1e-09 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 1e-08 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 1e-08 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 7e-08 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 7e-07 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 8e-07 | |
| cd04323 | 84 | cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-t | 1e-06 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 2e-06 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 1e-05 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 1e-05 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 3e-05 | |
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 4e-05 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 3e-04 | |
| cd04320 | 102 | cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, a | 0.001 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 0.003 |
| >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 999 bits (2584), Expect = 0.0
Identities = 426/486 (87%), Positives = 453/486 (93%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G VGEFRKKL+I DVKGG +EGL RVG + V GWVRTLRAQSSVTFIEVNDGSCLSNM
Sbjct: 80 GEAVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNM 139
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMT DAEGYDQV+SGLITTGAS+ +QG VV SQG KQKVELKV+KIV+VGKSDPSYPI
Sbjct: 140 QCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPI 199
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 200 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 259
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIP+S E S VD IPKTKDGLIDWSQDFF KPAFLTVSGQLN ETYAT
Sbjct: 260 GAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYAT 319
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+YIL+NC
Sbjct: 320 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENC 379
Query: 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361
KEDM+FFNTWIEKGIIDRLS V E++FVQLSYTDAIELL+KAKKKFEF VKWG DLQSEH
Sbjct: 380 KEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEH 439
Query: 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 421
ERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 440 ERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERL 499
Query: 422 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
EYLE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPR
Sbjct: 500 EYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRV 559
Query: 482 PGSVEF 487
PGS EF
Sbjct: 560 PGSAEF 565
|
Length = 565 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 785 bits (2030), Expect = 0.0
Identities = 275/478 (57%), Positives = 340/478 (71%), Gaps = 29/478 (6%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++ I D+ G VG + V GWVRT R + F+++ DGSC +Q V +
Sbjct: 2 MRVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGE 56
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
E ++++K +TTG+S+ + G VV S + Q EL+ KI ++G+ YPIQKKR S E
Sbjct: 57 EYFEEIKK--LTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIE 114
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPRTN FGAV R+RN LA A H+FF ENGF+W+ +PIITASDCEGAGE F V
Sbjct: 115 FLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRV 174
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL D+S+DFF K A+LTVSGQL AE YA AL VYTF
Sbjct: 175 TTLDL---------------------DFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTF 213
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309
GPTFRAENSNT RHLAEFWMIEPE+AFADL+D+M A L+YVV+Y+L+NC +D++F N
Sbjct: 214 GPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLN 273
Query: 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 369
++KG I+RL E F +++YT+AIE+L K+ KKFEF V+WG DL SEHERYL EE
Sbjct: 274 RRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEH 333
Query: 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 429
F PV V++YPK+IKAFYMR N DG+TVAAMD+L P IGE+IGGSQREERL+ LE R+
Sbjct: 334 F-KKPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIK 392
Query: 430 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
EL LN++ YWWYLDLR YGSVPH+GFGLGFERLV + TG++NIRD IPFPRTPG EF
Sbjct: 393 ELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAEF 450
|
Length = 450 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 629 bits (1625), Expect = 0.0
Identities = 253/461 (54%), Positives = 328/461 (71%), Gaps = 23/461 (4%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + V+GWVRT R+ + F+E+NDGS L +Q V+ + Y +TTG+S+
Sbjct: 15 VGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVS 74
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
+ G VV S G Q VEL+V KI +VG+++P YP+QKK S EFLR AHLR RTNT GA
Sbjct: 75 VTGKVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGA 134
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
V RVRNAL+ A H++FQENGF W+S PI+T++DCEGAGE F
Sbjct: 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELF------------------- 175
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+ G ID+SQDFF K A+LTVSGQL ETYA ALS VYTFGPTFRAE SNTSRHL+E
Sbjct: 176 --RVSTGNIDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSE 233
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
FWMIEPE+AFA+L D + A ++Y+++ +L+NC +++ F +K +I RL +
Sbjct: 234 FWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINN 293
Query: 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 386
F +++YTDAIE+L ++ K FE+ WG DLQ+EHER+L EE F PV V++YPK+IKA
Sbjct: 294 KFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFKP-PVFVTNYPKDIKA 352
Query: 387 FYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRH 446
FYM+ NDDG+TVAAMD+L P IGE+IGGS+RE+ L+ LE R+ E+ L+ D+ WYLDLR
Sbjct: 353 FYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRK 412
Query: 447 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
YGSVPH+GFGLGFERL+ + TG+ENIRDAIPFPRTPG++ F
Sbjct: 413 YGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNINF 453
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 548 bits (1415), Expect = 0.0
Identities = 204/482 (42%), Positives = 275/482 (57%), Gaps = 49/482 (10%)
Query: 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS 67
K+ I D+K P+ G V V GWV R + F+ + DGS +Q V+
Sbjct: 1 MMKRTYIKDIK--PHVGGQEV----TVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPK 52
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS 127
+ + K+ +T +S+ + G V S + Q EL+V KI ++G++DP YPI KK S
Sbjct: 53 NKVYEELFKAKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHS 112
Query: 128 R-EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
E L HL RT AV ++R+++ A +FF ENGF + +PIITAS EG GE
Sbjct: 113 ELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGEL 172
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246
F V D+F+K A+LT S QL E A AL V
Sbjct: 173 FKV------------------------------DYFDKEAYLTQSPQLYKEALAAALERV 202
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMD 306
+T GPTFRAE SNT RHL+EFWM++PE+AFADL D M A ++Y+ + +L+ C ++++
Sbjct: 203 FTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELE 262
Query: 307 FFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT 366
F + L F +++Y +AIE+L +K FE V+WG DL +EHERYL
Sbjct: 263 FLGRDNSE-----LKRPESAPFPRITYKEAIEIL--EEKGFEK-VEWGDDLGTEHERYLG 314
Query: 367 EEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLE 425
EE F PV V++YPKEIK FYMR + D TVA+ D+L P GE+IGGSQRE + L
Sbjct: 315 EEYFKP-PVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLV 373
Query: 426 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485
R+ E L+ +SY WYLDLR YG PHAGFGLG ERLV + G++NIR+AIPFPR PG +
Sbjct: 374 ERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRL 433
Query: 486 EF 487
Sbjct: 434 YP 435
|
Length = 435 |
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 525 bits (1353), Expect = 0.0
Identities = 264/551 (47%), Positives = 349/551 (63%), Gaps = 76/551 (13%)
Query: 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCV 64
+F ++ I + P+ G G + + GWV+T R Q + F+EVNDGSC +N+Q +
Sbjct: 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVM 87
Query: 65 MTSDAEGYDQVKSGLITTGASIWIQGNV-VP--SQGSKQKVELKVNKIVLVGKSDPS-YP 120
+ D+ YD S L+ TG + + G + VP +G+KQK+EL V K++ VG DP+ YP
Sbjct: 88 V--DSSLYDL--STLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYP 143
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPII----- 175
+ K +++ EFLR HLR RTN+ AVAR+RNALA+ATH FFQE+ F++I +PII
Sbjct: 144 LPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC 203
Query: 176 -----------------------------TASDCEGA-------GEQFCVTTLIPSSREA 199
T +D E A GE +S+E
Sbjct: 204 EGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEE 263
Query: 200 AESPV--------------------DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY 239
+ V +PK KDG ID+S+DFF + AFLTVSGQL ETY
Sbjct: 264 ITAAVAELKIAKESLAHIEERSKLKPGLPK-KDGKIDYSKDFFGRQAFLTVSGQLQVETY 322
Query: 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 299
A ALS+VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFADL+DDM CA AY++Y+ +++LD
Sbjct: 323 ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLD 382
Query: 300 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA---KKKFEFLVKWGCD 356
C +DM+ + G IDRL VA F +++YT+AIELL +A K+F+ V+WG D
Sbjct: 383 KCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGID 442
Query: 357 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 416
L SEHERYLTE F P+IV +YPK IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ
Sbjct: 443 LASEHERYLTEVLFQK-PLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQ 501
Query: 417 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476
REER + ++ R++E+ L + Y WYLDLR YG+V H GFGLGFER++ FATG++NIRD I
Sbjct: 502 REERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVI 561
Query: 477 PFPRTPGSVEF 487
PFPR PG +
Sbjct: 562 PFPRYPGKADL 572
|
Length = 572 |
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 493 bits (1270), Expect = e-171
Identities = 242/511 (47%), Positives = 322/511 (63%), Gaps = 55/511 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGA 84
+ +I V GW + +R Q F+ +NDGSC N+Q ++ E Y+++ K G+ G
Sbjct: 80 IDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGV---GC 136
Query: 85 SIWIQGNVV--PSQGS------KQKVELKVN-----KIVLVGKS-DPS-YPIQKKRVSRE 129
G ++ P Q K+ VEL + + G++ DP YP+ KK +E
Sbjct: 137 CFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKE 196
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPR+ +V R+RNALA ATH FFQ GF++I +P+IT SDCEG GE F V
Sbjct: 197 FLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTV 256
Query: 190 TTL---------IPSSR-----------------------EAAESPVDAIPKTKDG-LID 216
TTL IP ++ S + P D LID
Sbjct: 257 TTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLID 316
Query: 217 WSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276
+ +DFF K AFLTVSGQL+ E +++ +VYTFGPTFRAENS+TSRHLAEFWMIEPE+AF
Sbjct: 317 YKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAF 376
Query: 277 ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 336
ADL D+M A +Y++Y + Y+L+N +D+ +F +E G+I RL + + DF +++YT+
Sbjct: 377 ADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNV 436
Query: 337 IELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 396
I+LL FE VKWG DLQSEHER++ E+ F PVIV +YPK++KAFYM+ N+D +
Sbjct: 437 IDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFKK-PVIVYNYPKDLKAFYMKLNEDQK 495
Query: 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFG 456
TVAAMD+LVP+IGE+IGGSQRE+ LE L+ + E KLN +SYWWY LR +GS PHAGFG
Sbjct: 496 TVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFG 555
Query: 457 LGFERLVQFATGVENIRDAIPFPRTPGSVEF 487
LGFERL+ TGV+NI+D IPFPR PG EF
Sbjct: 556 LGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586
|
Length = 586 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 451 bits (1161), Expect = e-153
Identities = 223/547 (40%), Positives = 324/547 (59%), Gaps = 75/547 (13%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
S+V FR K++ GG + R I + ++ SV ++ ++DGSC++++Q
Sbjct: 96 SRVPIFRSIAKVL--SGGGSTYPVREKTEIAIQ---KSAPPPPSVAYLLISDGSCVASLQ 150
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQG---NVVPSQGSKQKVELKVNKIVLVGKSDPS- 118
V+ S Q L+ TG I +G +P+QG K +EL+V KI+ +G DP
Sbjct: 151 VVVDSALAPLTQ----LMATGTCILAEGVLKLPLPAQG-KHVIELEVEKILHIGTVDPEK 205
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
YP+ KKR+ + LR +H RPRT T +V RVR+AL +ATH FFQ++GF+++ PIIT +
Sbjct: 206 YPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265
Query: 179 DCEGAGEQFCVTTLI----------------------------------------PSSRE 198
D G GE F VTTL+ S+RE
Sbjct: 266 DATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNRE 325
Query: 199 AAESPVDAIPKT-------------------KDGLIDWSQDFFEKPAFLTVSGQLNAETY 239
A + + KT K + +S+DFF +P +LTVSG+L+ E+Y
Sbjct: 326 ALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESY 385
Query: 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 299
A AL NVYTFGP FRA+ +++RHLAE WM+E E+AF++L+D M CA Y +++ +++L+
Sbjct: 386 ACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLE 445
Query: 300 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA-KKKFEFLVKWGCDLQ 358
NC EDM F + I+K I RL + ++SYT+A++LL +A KKFE +WG L
Sbjct: 446 NCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALT 505
Query: 359 SEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQRE 418
+EH YL +E + PVI+ +YPKE+K FY+R NDDG+TVAA D++VP++G +I GSQ E
Sbjct: 506 TEHLSYLADEIYKK-PVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNE 564
Query: 419 ERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 478
ER++ L R++EL L R+ Y WYLDLR +G+V H+GF LGFE +V FATG+ ++RDAIPF
Sbjct: 565 ERMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPF 624
Query: 479 PRTPGSV 485
PR+ G
Sbjct: 625 PRSWGKA 631
|
Length = 633 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 422 bits (1088), Expect = e-147
Identities = 146/361 (40%), Positives = 200/361 (55%), Gaps = 41/361 (11%)
Query: 125 RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG 184
+ E L HL RT A+ R+R+ + A +F +ENGF + +P IT++D EG
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGA 60
Query: 185 EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244
E F +F KPA+L S QL E AL
Sbjct: 61 ELF------------------------------KVSYFGKPAYLAQSPQLYKEMLIAALE 90
Query: 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKE 303
VY GP FRAE SNT RHL+EFWM+E E+AF D + M ++Y+ + +L+ C +
Sbjct: 91 RVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAK 150
Query: 304 DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER 363
+++ N ++R F +++Y +AIELL + + E VKWG DL +EHER
Sbjct: 151 ELELVN------QLNRELLKPLEPFPRITYDEAIELLREKGVEEE--VKWGEDLSTEHER 202
Query: 364 YLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLE 422
L E G PV V+DYPKEIK FYM+ +DD TV + D+L+P +GE++GGSQR +
Sbjct: 203 LLGEIVKGD-PVFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYD 261
Query: 423 YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482
LE R+ E L+ +S+ WYLDLR YG PH GFGLG ERLV + G++NIR+AI FPR P
Sbjct: 262 ELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDP 321
Query: 483 G 483
Sbjct: 322 K 322
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 1e-77
Identities = 107/379 (28%), Positives = 160/379 (42%), Gaps = 56/379 (14%)
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
S E +L R A ++R+ + A +F E GF+ + +PI+T S EG
Sbjct: 1 SEETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARD 60
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSN 245
F L+PS F+ K A+L S QL + A
Sbjct: 61 F----LVPSK------------------------FYAKEAYLPQSPQLYKQLLMVAGFDR 92
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305
V+ P FR E+ T RH EF ++ E++F D +D M ++YV + +L +E
Sbjct: 93 VFQIAPCFRDEDLRTDRHPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFKKVLGKREELE 152
Query: 306 DFFNTWIEKGIIDRLSTVAER------DFVQLSYTDAIELLIKAKKKFEFLVK------- 352
IE R+ T AE D L + ++ + + K EF V
Sbjct: 153 LLG---IELPEFPRI-TYAEAIERYGSDKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVV 208
Query: 353 ---WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRI 408
G E L ++ PV V+D+P FYM +++D D+++
Sbjct: 209 DKALGALRSELGEENLGDK-DKDNPVFVTDFPLFEHPFYMPKDEDPPGLAERFDLVLN-G 266
Query: 409 GELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQ 464
GE+ GGS R E R +EL L+ + + +YLD YG PH G GLG +RLV
Sbjct: 267 GEIGGGSIRIHDPEEQRKRFEELGLDPEEAEEKFGFYLDALKYGMPPHGGIGLGLDRLVM 326
Query: 465 FATGVENIRDAIPFPRTPG 483
TG+E+IR+ I FP+T
Sbjct: 327 LLTGLESIREVIAFPKTRK 345
|
Length = 345 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 1e-76
Identities = 136/469 (28%), Positives = 214/469 (45%), Gaps = 77/469 (16%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQ 89
+ +AGWV +R + F+ + D S + +Q V+ E ++ +K + + + +
Sbjct: 19 VTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIK--KLKRESVVSVT 74
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL------------ 137
G V + + VE+ +I ++ K++ P+ +S + A L
Sbjct: 75 GTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLD---ISGK---VLAELDTRLDNRFLDLR 128
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197
RPR A+ ++R+ + A +F ENGF I +P I AS EG E F +
Sbjct: 129 RPRVR---AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI-------- 177
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAE 256
D+FEK A+L S QL + V+ GP FRAE
Sbjct: 178 ----------------------DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAE 215
Query: 257 NSNTSRHLAEFWMIEPELAFADL-KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 315
NTSRHL E+ I+ E+ F D +D M L+Y+ + +NC+++++ +
Sbjct: 216 EHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP-- 273
Query: 316 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA---FGG 372
V E +++Y +AIE+L + + WG DL +E ER L E +G
Sbjct: 274 -------VPETPIPRITYDEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKEEYGS 322
Query: 373 CPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431
++DYP E + FY M DD + D+L + E+ G QR R + L + E
Sbjct: 323 DFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLVESIKEK 381
Query: 432 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480
LN +S+ +YL+ YG PH GFGLG ERL G+ENIR+A+ FPR
Sbjct: 382 GLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPR 430
|
Length = 437 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 1e-52
Identities = 129/457 (28%), Positives = 200/457 (43%), Gaps = 54/457 (11%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGASIWIQG 90
+ GWV +R + F+ + D L +Q + + K + + + ++G
Sbjct: 15 VTFMGWVHEIRDLGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTFGAV 147
V + + E+ KI ++ ++ P+ L T+ R R T A+
Sbjct: 73 IVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAI 132
Query: 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207
R+R+ + + +F E GFI + +P + AS EG E F +T
Sbjct: 133 FRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPIT----------------- 175
Query: 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY-ATALSNVYTFGPTFRAENSNTSRHLAE 266
+FE+ AFL S QL + A VY GP FRAE NT RHL E
Sbjct: 176 -------------YFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNE 222
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
I+ E+AF D D M + V + + C ++ +EK E
Sbjct: 223 ATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFKLEK---------PEG 273
Query: 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 386
FV+L+Y +AIE+ + + WG DL +E E+ L EE G ++D+P EI+
Sbjct: 274 KFVRLTYDEAIEMANAKGVE----IGWGEDLSTEAEKALGEEMDG--LYFITDWPTEIRP 327
Query: 387 FY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLR 445
FY M D+ + D++ R E+ G+QR + L R+ LN + + YL+
Sbjct: 328 FYTMPDEDNPEISKSFDLMY-RDLEISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAF 386
Query: 446 HYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482
YG PHAG+GLG ER V F G++NIR+A+ FPR
Sbjct: 387 SYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDR 423
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 1e-52
Identities = 97/342 (28%), Positives = 165/342 (48%), Gaps = 44/342 (12%)
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
V +V++++ T +F GF+ + PII+ T P ++ PV
Sbjct: 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISP-----------STD--PLMGLGSDLPVKQ 75
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAEN--SNTSRHL 264
I S DF+ +L S L+ + L ++ P FR E +T RHL
Sbjct: 76 I----------SIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHL 125
Query: 265 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324
EF ++ E+ ADL + M ++Y+V+ +L+ +++++FF R
Sbjct: 126 YEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDELEFFG---------RDLPHL 176
Query: 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384
+R F ++++ +A+E+L + + L + G SE E+ L+E P + D PK
Sbjct: 177 KRPFKRITHKEAVEILNEEGCRGIDLEELG----SEGEKSLSEHF--EEPFWIIDIPKGS 230
Query: 385 KAFYMRQNDDGRT--VAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWY 441
+ FY R+ D R + D+L+P GE + G +RE E + R+ E ++ + Y WY
Sbjct: 231 REFYDRE-DPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWY 289
Query: 442 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483
L++ G +P AGFG+G ERL ++ G+ +IR+ PFPR PG
Sbjct: 290 LEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPFPRVPG 331
|
Length = 335 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 7e-33
Identities = 120/493 (24%), Positives = 208/493 (42%), Gaps = 81/493 (16%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI----- 80
+ G +++ G V T+R + F+ + +QCV+ V G++
Sbjct: 78 ELAGSEVLIRGRVHTIRGKGKSAFLVLR--QSGFTVQCVVFVSE---VTVSKGMVKYAKQ 132
Query: 81 -TTGASIWIQGNVV----PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR------- 128
+ + + ++G V P +G+ Q+VE++V KI V K+ + P + +R
Sbjct: 133 LSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEK 192
Query: 129 ------EFLRTKAHLRP-------RTNTFGAVARVRNALAYATHKFFQENGFIWISSPII 175
+ +R R RT A+ R+++ + +F GF+ I +P +
Sbjct: 193 ALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKL 252
Query: 176 TASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLN 235
A EG F L D+ +PA L S QL+
Sbjct: 253 IAGASEGGSAVF---RL---------------------------DYKGQPACLAQSPQLH 282
Query: 236 AETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYV 293
+ V+ GP FRAE+S T RHL EF ++ E+ + + + +
Sbjct: 283 KQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAI 342
Query: 294 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 353
+ + CK++++ + L ++L++ + I++L +A + + L
Sbjct: 343 FDGLNERCKKELEAIREQYPFEPLKYL-----PKTLRLTFAEGIQMLKEAGVEVDPL--- 394
Query: 354 GCDLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIG 409
DL +E ER L +E +G I+ YP ++ FY M DD + + D+ + R
Sbjct: 395 -GDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFI-RGE 452
Query: 410 ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 469
E+I G+QR E LE R +E ++ + Y+D YG+ PH GFG+G ER+V G+
Sbjct: 453 EIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGL 512
Query: 470 ENIRDAIPFPRTP 482
NIR FPR P
Sbjct: 513 NNIRKTSLFPRDP 525
|
Length = 530 |
| >gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 4e-30
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVR++R ++FIE+NDGSCL N+Q V+ + + ++ ++TG+SI ++G
Sbjct: 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEIL--KLSTGSSIRVEGV 59
Query: 92 VVPSQGSKQKVELKVNKIVLVGK 114
+V S G+KQ EL+ KI ++G+
Sbjct: 60 LVKSPGAKQPFELQAEKIEVLGE 82
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. S. cerevisiae mtAsnRS can charge E.coli tRNA with asparagines. Mutations in the gene for S. cerevisiae mtAsnRS has been found to induce a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system. Length = 82 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 2e-29
Identities = 73/337 (21%), Positives = 119/337 (35%), Gaps = 75/337 (22%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
+VR+ + A F + GF+ + +P++ F V
Sbjct: 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPF---------------LVKYNA 46
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
D + S F+K L V G L V+ FR E +RH EF
Sbjct: 47 LGLDYYLRISPQLFKK--RLMVGG----------LDRVFEINRNFRNE-DLRARHQPEFT 93
Query: 269 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328
M++ E+AFAD +D + ++++ R +L F + G F
Sbjct: 94 MMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFEL--EDFG----------LPF 141
Query: 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 388
+L+Y +A+E G P+ ++DYP E+ +
Sbjct: 142 PRLTYREALERY-------------------------------GQPLFLTDYPAEMHSPL 170
Query: 389 MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDL 444
+D +A L E+ GS R + E +N + + +YL
Sbjct: 171 ASPHDVNPEIADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKA 230
Query: 445 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
YG PH G G+G +RL+ T IR+ I FP+
Sbjct: 231 LEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKM 267
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 125/508 (24%), Positives = 204/508 (40%), Gaps = 88/508 (17%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTG 83
+ V +++ V T R + + F+ + DGS + D E D + G I T
Sbjct: 75 ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFI--GQIPTE 132
Query: 84 ASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE--------F 130
+ + ++ V + S +ELKV KI V +S + P + SR+
Sbjct: 133 SIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVN 192
Query: 131 LRTKAHLR---PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
T+ + R RT GA+ R+++ + +F ++ F I SP I + EG F
Sbjct: 193 FDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVF 252
Query: 188 CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNV 246
+ ++F + A+L S QL + + V
Sbjct: 253 KL------------------------------EYFNRFAYLAQSPQLYKQMVLQGDVPRV 282
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELA---------------FADLKDDMACATAYLQ 291
+ GP FR+ENSNT RHL EF ++ E+ F + + +A T L+
Sbjct: 283 FEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHTKELK 342
Query: 292 YVVR------YILDNCKEDMDFFNTW-IEKGIID------RLSTVAERDFVQLSYTDAIE 338
V + + E M I +G+ R+ + R ++++Y IE
Sbjct: 343 AVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHNMDSR-MLRINYMHCIE 401
Query: 339 LLIKAKKKFEFLVKWGCDLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MRQNDD 394
LL E + D+ + +E+ L +E +G I +P + FY M DD
Sbjct: 402 LL---NTVLEEKMAPTDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKDD 458
Query: 395 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAG 454
R + DM + R E+ G+QR + L R L ++ Y+D G+ PH G
Sbjct: 459 ERFTNSYDMFI-RGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGG 517
Query: 455 FGLGFERLVQFATGVENIRDAIPFPRTP 482
FG+G ER+V G+ N+R A FPR P
Sbjct: 518 FGVGLERVVMLYLGLSNVRLASLFPRDP 545
|
Length = 550 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-15
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ +AGWV + R + FI++ DGS +Q V+ + G ++ + T + + + G
Sbjct: 2 VTLAGWVHSRRDHGGLIFIDLRDGS--GIVQVVVNKEELGEFFEEAEKLRTESVVGVTGT 59
Query: 92 VVPSQG---SKQKVELKVNKIVLVGK 114
VV + ++EL+ ++ ++ K
Sbjct: 60 VVKRPEGNLATGEIELQAEELEVLSK 85
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 7e-15
Identities = 66/265 (24%), Positives = 104/265 (39%), Gaps = 50/265 (18%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR-----YILDN 300
V+ G FR E +T H EF M+E A+AD +D M ++ + + +
Sbjct: 251 VFEIGRNFRNEGIDT-THNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTY 309
Query: 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD--AIELLIKAKKKFEFLVKWGC--- 355
+++DF + ++D L DF L + D A EL K + E WG
Sbjct: 310 GGQEIDFSKPFKRITMVDALKEYLGVDFDDL-FDDEEAKELAKKHGIEVEKYGTWGLGHL 368
Query: 356 -DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE---- 410
+ E L E P V+D+P EI +++ P + E
Sbjct: 369 LNELFEE---LVEAKLIQ-PTFVTDHPVEISPL-AKRHRSN----------PGLTERFEL 413
Query: 411 LIGGSQRE------------ERLEYLEGRLDELKLNRDSY----WWYLDLRHYGSVPHAG 454
IGG +E ++ E E +++E + D +++ YG P G
Sbjct: 414 FIGG--KEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGG 471
Query: 455 FGLGFERLVQFATGVENIRDAIPFP 479
G+G +RLV T +IRD I FP
Sbjct: 472 LGIGIDRLVMLLTNSPSIRDVILFP 496
|
Length = 502 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 8e-14
Identities = 106/503 (21%), Positives = 179/503 (35%), Gaps = 103/503 (20%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGL 79
NE L+ + + +AG + R+ TFI + D S +Q + D E + + L
Sbjct: 46 NEELEDKNIEVSIAGRIMARRSMGKATFITLQDES--GQIQLYVNKDDLPEDFYEFDEYL 103
Query: 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS-----DPSYPI--QKKRVSREFLR 132
+ G I + G P + ++ + V ++ ++ K+ D + + Q+ R + +L
Sbjct: 104 LDLGDIIGVTGY--PFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYLD 161
Query: 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL 192
+ R TF VR+ + A +F + GFI + +P++
Sbjct: 162 LIVNPDSR-QTF----LVRSKIIKAIRRFLDDRGFIEVETPMLQV--------------- 201
Query: 193 IPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY---ATAL------ 243
IP A +P F+T L+ + Y A L
Sbjct: 202 IPGGANA------------------------RP-FITHHNALDMDLYLRIAPELYLKRLI 236
Query: 244 ----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 299
VY G FR E +T H EF MIE A+AD +D M +++ + +L
Sbjct: 237 VGGFEKVYEIGRNFRNEGVDT-THNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLG 295
Query: 300 NCK-----EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 354
K ++DF + +++ + + E KK V
Sbjct: 296 TTKITYGELEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVA-E 354
Query: 355 CDLQSEHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR 407
L H + E F P ++ YP EI ++N L
Sbjct: 355 KSLTLGH---ILNELFEQFLEHTLIQPTFITHYPAEISPL-AKRNPSNPEFTDRFELFIA 410
Query: 408 IGELIGG--------SQREERLEYLEGRL---DELKLNRDSYWWYLDLRHYGSVPHAGFG 456
E+ QRE + + + DE + + + L+ YG P G G
Sbjct: 411 GKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALE---YGMPPTGGLG 467
Query: 457 LGFERLVQFATGVENIRDAIPFP 479
+G +RLV T ++IRD I FP
Sbjct: 468 IGIDRLVMLLTDSKSIRDVILFP 490
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 88/346 (25%), Positives = 138/346 (39%), Gaps = 82/346 (23%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAA--ESPVDA 206
R+R+ + A F E GF+ I +PI+T S EGA + F V + + + A +SP
Sbjct: 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSP--- 57
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
Q F + L VSG + Y + FR E+ R E
Sbjct: 58 ------------QLFKQ---LLMVSG---FDRY-------FQIARCFRDEDLRADRQ-PE 91
Query: 267 FWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326
F I+ E++F D +D M+ L+YV + + +
Sbjct: 92 FTQIDIEMSFVDQEDIMSLIEGLLKYVFK----------EVLGVELTT------------ 129
Query: 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCD-----LQSEHERYL-TEEAFGGCPVIVSDY 380
F +++Y +A+E + F+FL W D E R + F +
Sbjct: 130 PFPRMTYAEAME-----RYGFKFL--WIVDFPLFEWDEEEGRLVSAHHPF------TAPK 176
Query: 381 PKEIKAFYMRQNDDGRTVA-AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 439
+++ D A A D+++ + EL GGS R + E + L L+ +
Sbjct: 177 EEDLDLLE---KDPEDARAQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAE 232
Query: 440 ----WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
+ L+ YG+ PH G LG +RLV TG E+IRD I FP+T
Sbjct: 233 EKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKT 278
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 67/269 (24%), Positives = 93/269 (34%), Gaps = 57/269 (21%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED- 304
VY G FR E + H EF MIE A+AD D M +V+ I K +
Sbjct: 79 VYEIGRNFRNEGIDL-THNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEY 137
Query: 305 ----MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
+DF + ++D L DF +L EL K L+K +
Sbjct: 138 GGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELA----KLLAKLIKEKIEKPRT 193
Query: 361 HERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIG 413
+ L ++ F P + D+P EI R + L R I
Sbjct: 194 LGKLL-DKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRSNPG-------LTERFELFIC 245
Query: 414 GS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYGSV 450
G QRE E + + +DE D ++ YG
Sbjct: 246 GKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDE-----D----FVTALEYGMP 296
Query: 451 PHAGFGLGFERLVQFATGVENIRDAIPFP 479
P G G+G +RLV T +IRD I FP
Sbjct: 297 PTGGLGIGIDRLVMLLTDSNSIRDVILFP 325
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-08
Identities = 68/275 (24%), Positives = 102/275 (37%), Gaps = 73/275 (26%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
VY G FR E +T RH EF M+E A+AD D M ++++ + +L K
Sbjct: 243 VYEIGRNFRNEGIDT-RHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTY 301
Query: 303 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360
++DF + ++D + DF ++ +A L + + E G
Sbjct: 302 QGTEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLG------ 355
Query: 361 HERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE- 410
L E F P ++DYP EI A +++ + P + E
Sbjct: 356 ---KLINELFEEFVEPKLIQPTFITDYPVEISPLA---KRHRE----------DPGLTER 399
Query: 411 ---LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDL 444
IGG QRE +E + +DE D +L
Sbjct: 400 FELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDE-----D----FLRA 450
Query: 445 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 479
YG P G G+G +RLV T +IRD I FP
Sbjct: 451 LEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485
|
Length = 491 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 410 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 465
EL GGS R E + + L ++ R+ + + L+ YG+ PHAGF LG +RL+
Sbjct: 478 ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMML 537
Query: 466 ATGVENIRDAIPFPRT 481
TG +NIRD I FP+T
Sbjct: 538 LTGTDNIRDVIAFPKT 553
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 447 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
YG+ PH G G +RLV TG E+IRD I FP+T
Sbjct: 522 YGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKT 556
|
Length = 585 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 7e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 447 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
YG+ PH G G +RLV G ++IRD I FP+T
Sbjct: 524 YGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKT 558
|
Length = 588 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 8e-07
Identities = 106/495 (21%), Positives = 184/495 (37%), Gaps = 90/495 (18%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79
N+ L+ + + + VAG + T R +F+ + D + S EG DQ K
Sbjct: 58 NQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKK-- 115
Query: 80 ITTGASIWIQGNVVPSQGS---KQKVELKVN--KIVLVGKSDPSYPI-------QKKRVS 127
W G+++ ++G+ Q EL ++ ++ L+ K+ P Q+ R
Sbjct: 116 -------WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYR 168
Query: 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
+ +L A+ + R TF VR+ + A +F GF+ + +P++
Sbjct: 169 QRYLDLIANDKSR-QTF----VVRSKILAAIRQFMVARGFMEVETPMMQ----------- 212
Query: 188 CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVY 247
+IP A D + + + + K L V G V+
Sbjct: 213 ----VIPGGASARPFITHHNALDLDMYLRIAPELYLKR--LVVGG----------FERVF 256
Query: 248 TFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK----- 302
FR E + RH EF M+E +A+AD D + + + + + +L K
Sbjct: 257 EINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGE 315
Query: 303 EDMDF---FNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 359
DF F + I + E D L DA + L ++ WG
Sbjct: 316 HVFDFGKPFEKLTMREAIKKYR--PETDMADLDNFDAAKALAESIG-ITVEKSWGLG--- 369
Query: 360 EHERYLTE------EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIG 413
R +TE EA P +++YP E+ R + + + + G IG
Sbjct: 370 ---RIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIG--GREIG 424
Query: 414 G-----SQREERLEYLEGRLDELKLNRDSYWWY----LDLRHYGSVPHAGFGLGFERLVQ 464
+ E++ E + +++ D +Y + YG P AG G+G +R++
Sbjct: 425 NGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIM 484
Query: 465 FATGVENIRDAIPFP 479
T IRD I FP
Sbjct: 485 LFTNSHTIRDVILFP 499
|
Length = 505 |
| >gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWV LR+Q + F+ + DG+ +QCV++ L T +S+ + G
Sbjct: 2 VKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSL-TQESSVEVTGE 58
Query: 92 VVPSQGSKQK---VELKVNKIVLVGK 114
V +KQ EL+V+ + ++G+
Sbjct: 59 VKEDPRAKQAPGGYELQVDYLEIIGE 84
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. AsnRS is immunodominant antigen of the filarial nematode B. malayai and of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 84 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 40/276 (14%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
+G + +AGWV R + FI++ D S + +Q V DA+ K + +
Sbjct: 14 LGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQ 69
Query: 88 IQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLRP 139
++G V +G+ ++E+ I L+ KS I +K + E +R K +L
Sbjct: 70 VKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDL 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
R ++R+ + A F + GF+ I +P++T S EGA + L+PS
Sbjct: 130 RRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD-----YLVPSR--- 181
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
+ K + + S F++ L VSG + Y Y FR E+
Sbjct: 182 -------VHKGEFYALPQSPQLFKQ--LLMVSG---VDRY-------YQIARCFRDEDLR 222
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295
R EF I+ E++F +D M + +V
Sbjct: 223 ADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFL 257
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 20/130 (15%)
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+R+ + +F E GF + +PI+ P +A P D +P
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVER---------------EPLLEKAGHEPKDLLP- 44
Query: 210 TKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTS-RHLAEFW 268
+D + +P +L + GP FR E R + EF
Sbjct: 45 VGAEN---EEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFT 101
Query: 269 MIEPELAFAD 278
+E E+ D
Sbjct: 102 QLEGEVFGED 111
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 400 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGF 455
A DM V E+ GGS R R + + L+ + L+ + + L+ G+ PH G
Sbjct: 537 AYDM-VYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGI 595
Query: 456 GLGFERLVQFATGVENIRDAIPFPRT 481
G +RLV G ++IRD I FP+T
Sbjct: 596 AYGLDRLVMLLAGAKSIRDVIAFPKT 621
|
Length = 652 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGAS 85
VG + ++GWV R + FI++ D + +Q V + E ++ +
Sbjct: 14 VGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFV 69
Query: 86 IWIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTK-AH 136
I + G V +G+ ++E+ +I ++ S + I+ + + E +R K +
Sbjct: 70 IQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRY 129
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
L R ++R+ + A F + GF+ I +PI+T S EGA
Sbjct: 130 LDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGA 176
|
Length = 585 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 76/267 (28%), Positives = 102/267 (38%), Gaps = 52/267 (19%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
VY G FR E +T RH EF E A+AD D M + +V+ + + K
Sbjct: 300 VYEIGRQFRNEGIST-RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKY 358
Query: 303 --EDMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLIKAKKKFEFLVKWGCDLQS 359
++DF + +I + DF L +A LI A +KF+ C
Sbjct: 359 HGIEIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDV----KCPPPQ 414
Query: 360 EHERYLTE--EAFG--GC--PVIVSDYPKEIK--AFYMRQNDD----------GRTVA-A 400
R L E E F P V D+P E+ A R GR +A A
Sbjct: 415 TTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKPHRSKPGLTERFELFINGRELANA 474
Query: 401 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR--DSYWWYLD------LRHYGSVPH 452
L + QRE R E +++K + D LD L YG P
Sbjct: 475 FSELTDPV------DQRE-RFE------EQVKQHNAGDDEAMALDEDFCTALE-YGLPPT 520
Query: 453 AGFGLGFERLVQFATGVENIRDAIPFP 479
G+GLG +RLV T +IRD I FP
Sbjct: 521 GGWGLGIDRLVMLLTDSASIRDVIAFP 547
|
Length = 553 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 3e-04
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R + FI++ D + +Q V DAE ++ +S + + I
Sbjct: 16 VGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQ 71
Query: 88 IQGNVVP-SQGSKQK------VELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAH--- 136
+ G V +G+ +E+ +++ ++ KS +PI + E LR K +
Sbjct: 72 VTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLK-YRYL 130
Query: 137 -LR-PR-TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
LR P ++R+ + A F +NGF+ I +PI+T S EGA
Sbjct: 131 DLRRPEMQKNL----KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGA 176
|
Length = 588 |
| >gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.001
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 32 IVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTSDAEG-----YDQVKSGLITTGAS 85
+++ V T RAQ + + F+ + +Q V+ + AEG S ++ +
Sbjct: 2 VLIRARVHTSRAQGAKLAFLVLRQQG--YTIQGVLAASAEGVSKQMVKWAGS--LSKESI 57
Query: 86 IWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQ 122
+ ++G V + ++Q VEL + KI +V ++ P Q
Sbjct: 58 VDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQ 99
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Length = 102 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 63/271 (23%), Positives = 113/271 (41%), Gaps = 49/271 (18%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R +TF++V D + + + + E + + +
Sbjct: 71 VGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDEFPEAHRTANR--LRNEYVVA 128
Query: 88 IQGNVVPSQGSKQ--------KVELKVNKI-VL--VGKSDPSYPI----QKKRVSREFLR 132
++G V S+ + VE+ + +L V KS P + + ++K +E +R
Sbjct: 129 VEG-TVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLP-FLVTTADEQKDSIKEEVR 186
Query: 133 TK-AHLRPRTNTFGAVARVRNALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVT 190
+ L R A R+R+ + ++ ++ +GF+ I +PI++ S EGA +
Sbjct: 187 LRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDY---- 242
Query: 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFG 250
L+PS + A+P+ S F++ L VSG + Y Y
Sbjct: 243 -LVPSRVQPGT--FYALPQ--------SPQLFKQ--MLMVSG---FDRY-------YQIA 279
Query: 251 PTFRAENSNTSRHLAEFWMIEPELAFADLKD 281
FR E+ R EF ++ ELAF L+D
Sbjct: 280 RCFRDEDLRADRQ-PEFTQLDMELAFTPLED 309
|
Length = 652 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| KOG0554 | 446 | consensus Asparaginyl-tRNA synthetase (mitochondri | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| KOG1885 | 560 | consensus Lysyl-tRNA synthetase (class II) [Transl | 100.0 | |
| KOG0556 | 533 | consensus Aspartyl-tRNA synthetase [Translation, r | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| KOG0555 | 545 | consensus Asparaginyl-tRNA synthetase [Translation | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| KOG2411 | 628 | consensus Aspartyl-tRNA synthetase, mitochondrial | 100.0 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 100.0 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.86 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.82 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.8 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.78 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.72 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.72 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 99.7 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.7 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 99.68 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 99.68 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.67 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 99.67 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.66 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 99.62 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.57 | |
| cd00645 | 309 | AsnA Asparagine synthetase (aspartate-ammonia liga | 99.54 | |
| PRK05425 | 327 | asparagine synthetase AsnA; Provisional | 99.54 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.54 | |
| PTZ00213 | 348 | asparagine synthetase A; Provisional | 99.53 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 99.48 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.43 | |
| TIGR00669 | 330 | asnA aspartate--ammonia ligase, AsnA-type. The fac | 99.4 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 99.36 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 99.35 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 99.27 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 99.01 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 98.98 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.98 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 98.94 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.7 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 98.69 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.47 | |
| KOG2783 | 436 | consensus Phenylalanyl-tRNA synthetase [Translatio | 98.35 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 98.23 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 98.18 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.15 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 98.02 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 97.98 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 97.97 | |
| COG2502 | 330 | AsnA Asparagine synthetase A [Amino acid transport | 97.95 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 97.9 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.86 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.83 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 97.78 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.76 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.76 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.73 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.72 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.7 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.65 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.62 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.61 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 97.61 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.59 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.59 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.58 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 97.58 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.53 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.49 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.49 | |
| PLN02530 | 487 | histidine-tRNA ligase | 97.49 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 97.47 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 97.45 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 97.44 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 97.37 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.37 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 97.26 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 97.09 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.96 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 96.93 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 96.85 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 96.72 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 96.62 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 96.51 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 96.27 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 96.23 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 96.21 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 96.13 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.08 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 96.07 | |
| PF10451 | 256 | Stn1: Telomere regulation protein Stn1; InterPro: | 95.84 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 95.71 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 95.67 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 95.38 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 94.97 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 94.85 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 94.8 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 94.77 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 94.69 | |
| COG5235 | 258 | RFA2 Single-stranded DNA-binding replication prote | 94.59 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 94.56 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 94.38 | |
| KOG2324 | 457 | consensus Prolyl-tRNA synthetase [Translation, rib | 94.1 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 94.08 | |
| TIGR00156 | 126 | conserved hypothetical protein TIGR00156. As of th | 94.03 | |
| PF12869 | 144 | tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 | 93.96 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 93.95 | |
| PRK15491 | 374 | replication factor A; Provisional | 93.06 | |
| COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translatio | 93.06 | |
| PRK06253 | 529 | O-phosphoseryl-tRNA synthetase; Reviewed | 92.99 | |
| PRK10053 | 130 | hypothetical protein; Provisional | 92.59 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 92.21 | |
| PRK14699 | 484 | replication factor A; Provisional | 92.13 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 91.83 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 91.42 | |
| cd04479 | 101 | RPA3 RPA3: A subfamily of OB folds similar to huma | 91.22 | |
| PF08661 | 109 | Rep_fac-A_3: Replication factor A protein 3; Inter | 90.78 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 90.46 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 90.42 | |
| PF03100 | 131 | CcmE: CcmE; InterPro: IPR004329 CcmE is the produc | 90.39 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 90.24 | |
| PRK06461 | 129 | single-stranded DNA-binding protein; Reviewed | 89.99 | |
| KOG1936 | 518 | consensus Histidyl-tRNA synthetase [Translation, r | 89.54 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 89.18 | |
| cd04484 | 82 | polC_OBF polC_OBF: A subfamily of OB folds corresp | 89.17 | |
| COG2024 | 536 | Phenylalanyl-tRNA synthetase alpha subunit (archae | 89.14 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 87.93 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 87.06 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 86.28 | |
| PRK07279 | 1034 | dnaE DNA polymerase III DnaE; Reviewed | 85.49 | |
| PRK14699 | 484 | replication factor A; Provisional | 84.66 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 84.55 | |
| PRK07217 | 311 | replication factor A; Reviewed | 84.09 | |
| cd04491 | 82 | SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil | 84.02 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 83.5 | |
| KOG3108 | 265 | consensus Single-stranded DNA-binding replication | 83.44 | |
| PRK12366 | 637 | replication factor A; Reviewed | 83.27 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 83.24 | |
| PRK07211 | 485 | replication factor A; Reviewed | 83.08 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 82.49 | |
| PRK15491 | 374 | replication factor A; Provisional | 82.45 | |
| COG1571 | 421 | Predicted DNA-binding protein containing a Zn-ribb | 81.9 | |
| PLN02900 | 936 | alanyl-tRNA synthetase | 80.87 |
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-113 Score=904.84 Aligned_cols=484 Identities=88% Similarity=1.378 Sum_probs=436.6
Q ss_pred CCCccccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCC
Q 011364 4 KVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (487)
Q Consensus 4 ~~~~~~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~g 83 (487)
..+++..++.|+++...-..+.++.|++|+|+|||+++|.+|+++|++|+|+++..+||||++.+...++.+..+.|+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~g 161 (565)
T PLN02603 82 AVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTG 161 (565)
T ss_pred cccccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCC
Confidence 35677788899999843223346789999999999999999999999999999877899999876555666543349999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhh
Q 011364 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163 (487)
Q Consensus 84 d~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~ 163 (487)
|+|.|+|++++++++++.+||++++++||++|++++|++.+.++.+++|.++|||+|++.+++++|+||++++++|+||.
T Consensus 162 s~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~ 241 (565)
T PLN02603 162 ASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 241 (565)
T ss_pred CEEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988878899999999999999877999888889999999999999999999999999999999999999
Q ss_pred cCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccC
Q 011364 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATAL 243 (487)
Q Consensus 164 ~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~ 243 (487)
++||+||+||+|++++|||+++.|.||+..+..+|+..+....++++.++..+.+.+||++++||++|||||+|++++|+
T Consensus 242 ~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l 321 (565)
T PLN02603 242 ENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATAL 321 (565)
T ss_pred HCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcc
Confidence 99999999999999999999999999876543333222222334445555555667899999999999999999999999
Q ss_pred CceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhh
Q 011364 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 323 (487)
Q Consensus 244 ~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 323 (487)
+|||+||||||||+++|+|||+||||||+|++|+|++|+|+++|++|+++++.+.+++.+++++.+.+.+.++.+.++..
T Consensus 322 ~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~ 401 (565)
T PLN02603 322 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDV 401 (565)
T ss_pred cceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888777888888888
Q ss_pred hcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEE
Q 011364 324 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDM 403 (487)
Q Consensus 324 ~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl 403 (487)
++.||++|||+||+++|++.+.+++...+||.+|++++|++|.+.+++++||||+|||.+++||||+.++|++++++|||
T Consensus 402 ~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~fDL 481 (565)
T PLN02603 402 VEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDM 481 (565)
T ss_pred cCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEEEE
Confidence 88899999999999999987766665678999999999999998776447999999999999999988888889999999
Q ss_pred EecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 404 LVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 404 ~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
++||+|||+||++|+|+++++.++++++|++++.|+|||++++||+|||||||||||||+|++||.+|||||++|||++|
T Consensus 482 l~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~g 561 (565)
T PLN02603 482 LVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVPG 561 (565)
T ss_pred EecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 011364 484 SVEF 487 (487)
Q Consensus 484 ~~~~ 487 (487)
+|.|
T Consensus 562 ~~~~ 565 (565)
T PLN02603 562 SAEF 565 (565)
T ss_pred CCCC
Confidence 9986
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-110 Score=848.62 Aligned_cols=428 Identities=47% Similarity=0.792 Sum_probs=393.3
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~V 86 (487)
.+++++|+.+. ..++.|+|+|||+++|++|+++||.|||++|+ ||||++++. ..++ +++ |+.||+|
T Consensus 3 ~~~~i~di~~~------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~-~~~--L~~es~v 71 (435)
T COG0017 3 KRTYIKDIKPH------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPKNKVYEELFK-AKK--LTLESSV 71 (435)
T ss_pred ceeeHHhhhcc------CCCcEEEEEEEeeeecccCCeEEEEEEcCCcE--EEEEEECCCCcHHHhh-hhc--CCCccEE
Confidence 46788898864 33499999999999999999999999999987 999998642 2355 677 9999999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC-hhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcC
Q 011364 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (487)
Q Consensus 87 ~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~-~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (487)
.|+|+|++++.+.+++||++++|+|++.+..++|++++.++ .++++++|||++|++..+++|++||.+++++|+||.++
T Consensus 72 ~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~ 151 (435)
T COG0017 72 VVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYEN 151 (435)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhC
Confidence 99999999999989999999999999999666999999886 99999999999999999999999999999999999999
Q ss_pred CeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCc
Q 011364 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (487)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~k 245 (487)
||+||+||+|+++++||++++|.+ +||+.++||+||||||||+++++++|
T Consensus 152 gF~eV~tP~i~~~~~EGg~elF~v------------------------------~yf~~~a~LtqS~QLyke~~~~al~r 201 (435)
T COG0017 152 GFTEVHTPIITASATEGGGELFKV------------------------------DYFDKEAYLTQSPQLYKEALAAALER 201 (435)
T ss_pred CcEEecCceEeccCCCCCceeEEE------------------------------eecCcceEEecCHHHHHHHHHHHhCc
Confidence 999999999999999999999986 68999999999999999998888999
Q ss_pred eEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhc
Q 011364 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 325 (487)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 325 (487)
||+|||+||+|+++|+|||.||||+|.||+|++++|+|+++|+||+++++.+++.|+.+|++++. +.. .+.....
T Consensus 202 Vf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~---~l~~~~~ 276 (435)
T COG0017 202 VFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNS---ELKRPES 276 (435)
T ss_pred eEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cch---hhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999877753 111 1221114
Q ss_pred CCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCC-CceEEEEEE
Q 011364 326 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDML 404 (487)
Q Consensus 326 ~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~-~~~~~fdl~ 404 (487)
.||+||||.||+++|++.+.+. .+||+|+++++|++|.+.++. .|+||+|||.+++||||+.++|+ +++.+|||+
T Consensus 277 ~pf~ritY~eAieiL~~~~~e~---~~~GdDl~~e~Er~l~e~~~~-~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll 352 (435)
T COG0017 277 APFPRITYKEAIEILEEKGFEK---VEWGDDLGTEHERYLGEEYFK-PPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLL 352 (435)
T ss_pred CCccEEEHHHHHHHHHhcCCcc---cCCCCccCCHHHHHHHHHhCC-CcEEEEeCcccccccccccCCCCCCeEEEEeee
Confidence 6899999999999999876542 689999999999999988765 47999999999999999988766 789999999
Q ss_pred ecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 405 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 405 ~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
+||+|||+|||||+|+++.|.+++++.|++++.|+|||++++||+|||||||||+|||+|++||++||||++||||++++
T Consensus 353 ~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r 432 (435)
T COG0017 353 APGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGR 432 (435)
T ss_pred cCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCCCC
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 011364 485 VEF 487 (487)
Q Consensus 485 ~~~ 487 (487)
+.+
T Consensus 433 ~~p 435 (435)
T COG0017 433 LYP 435 (435)
T ss_pred CCC
Confidence 864
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-107 Score=857.94 Aligned_cols=460 Identities=51% Similarity=0.917 Sum_probs=400.8
Q ss_pred CCCCCCEEEEEEEEeeeecCC--CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCC----
Q 011364 25 LDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS---- 98 (487)
Q Consensus 25 ~~~~~~~V~v~GwV~~iR~~g--~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~---- 98 (487)
.++.|+.|+|+|||+++|++| +++|++|+||+|...+|||++.....++.+++ |+.|++|.|+|+++.++.+
T Consensus 77 ~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~--l~~gs~v~v~G~v~~~~~~~~n~ 154 (586)
T PTZ00425 77 NKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK--CGVGCCFRFTGKLIISPVQNENK 154 (586)
T ss_pred cccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc--CCCccEEEEEEEEEcCCccccCc
Confidence 466799999999999999987 49999999999877899999865445667777 9999999999999987533
Q ss_pred ----CceEEEEE-----eEEEEEccCC-C-CCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCe
Q 011364 99 ----KQKVELKV-----NKIVLVGKSD-P-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF 167 (487)
Q Consensus 99 ----~~~~el~~-----~~i~vls~~~-~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF 167 (487)
++++||.+ ++++||+++. + .+|++++.++.+++|++||||+|++.++++||+||.+..++|+||.++||
T Consensus 155 ~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF 234 (586)
T PTZ00425 155 KGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGF 234 (586)
T ss_pred CCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35699998 7999999983 3 38999888899999999999999999999999999999999999999999
Q ss_pred EEEeCCeeeccCCCCCCCCceeeecCCCc-cccc---------------C----------------CCCCCCCCC-CCCC
Q 011364 168 IWISSPIITASDCEGAGEQFCVTTLIPSS-REAA---------------E----------------SPVDAIPKT-KDGL 214 (487)
Q Consensus 168 ~EV~TP~L~~~~~eg~~~~F~vt~~~~~~-~~~~---------------~----------------~~~~~~~~~-~~~~ 214 (487)
+||+||+|++++|||+++.|.|++..... +..+ . +.....+.. ....
T Consensus 235 ~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 314 (586)
T PTZ00425 235 LYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYL 314 (586)
T ss_pred EEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999997542110 0000 0 000000000 0011
Q ss_pred ccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 294 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~ 294 (487)
.+...+||++++||++|||||+|++++|++|||+|+||||||+++|+||++||||||+|++|+|++++|+++|++|++++
T Consensus 315 ~~~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~ 394 (586)
T PTZ00425 315 IDYKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCI 394 (586)
T ss_pred ccccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 23345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCcc
Q 011364 295 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 374 (487)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p 374 (487)
+.+++.+..++.+++.....++.+.++..++.||++|||+||+++|++.+.+++....||.++..++|++|.+.++. +|
T Consensus 395 ~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~~~G~dL~~e~Er~L~~~~~~-~P 473 (586)
T PTZ00425 395 GYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFK-KP 473 (586)
T ss_pred HHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCCCcccccchHHHHHHHHHhcC-Cc
Confidence 99999888888876544444566777777778999999999999999876544445789999999999999986555 79
Q ss_pred EEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccc
Q 011364 375 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAG 454 (487)
Q Consensus 375 ~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G 454 (487)
|||+|||.+++||||+.++|+.++++|||++||+|||+|||+|+++++.+.+++++.|++++.|+|||++++||+|||||
T Consensus 474 vFItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgG 553 (586)
T PTZ00425 474 VIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAG 553 (586)
T ss_pred EEEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCce
Confidence 99999999999999988888888999999999989999999999999999999999999999999999999999999999
Q ss_pred eeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011364 455 FGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487 (487)
Q Consensus 455 ~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~~ 487 (487)
||||||||+||+||.+|||||++|||++|+|.|
T Consensus 554 fGLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 554 FGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred EEEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 999999999999999999999999999999986
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-106 Score=858.12 Aligned_cols=478 Identities=55% Similarity=0.949 Sum_probs=411.0
Q ss_pred CCccccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCC--eEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCC
Q 011364 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (487)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~--i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~ 82 (487)
.|+|..+.+|++|+....++.+++|+.|+|+|||+++|.+|| ++||+|||+++.+.||||++++.. ...+. |+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~--~~~~~--L~~ 101 (572)
T PLN02221 26 KAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY--DLSTL--VAT 101 (572)
T ss_pred cccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh--hHHhc--CCC
Confidence 467778889999985544456788999999999999999985 899999999965569999986532 22235 999
Q ss_pred CcEEEEEeeEeecCC---CCceEEEEEeEEEEEccCCC-CCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHH
Q 011364 83 GASIWIQGNVVPSQG---SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (487)
Q Consensus 83 gd~V~V~G~~~~~~~---~~~~~el~~~~i~vls~~~~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (487)
||+|.|+|+|++++. .++++||++++|.|||+|.. ++|++.+.++.+++|+++|||+|++.++++||+||.+.+++
T Consensus 102 ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~ai 181 (572)
T PLN02221 102 GTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFAT 181 (572)
T ss_pred ceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998764 35689999999999999974 59998888899999999999999999999999999999999
Q ss_pred HHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcc----------------------------------cccC---
Q 011364 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR----------------------------------EAAE--- 201 (487)
Q Consensus 159 R~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~----------------------------------~~~~--- 201 (487)
|+||.++||+||+||+|++++|||+++.|.|+++..... +.+.
T Consensus 182 R~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (572)
T PLN02221 182 HSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASK 261 (572)
T ss_pred HHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccch
Confidence 999999999999999999999999999999976531000 0000
Q ss_pred --------------CCCCCC---------CCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCC
Q 011364 202 --------------SPVDAI---------PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENS 258 (487)
Q Consensus 202 --------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~ 258 (487)
..+.++ ..++.|..+.+.+|||+++||+||||||||++++|++|||+||||||||++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s 341 (572)
T PLN02221 262 EEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENS 341 (572)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCC
Confidence 000000 012234444566899999999999999999998999999999999999999
Q ss_pred CCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHH
Q 011364 259 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIE 338 (487)
Q Consensus 259 ~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~ 338 (487)
+|+||||||||||+|++|.|++|+|+++|+||+++++.+.+.|.+++.++.........+.|+...+.||+||||.||++
T Consensus 342 ~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~ 421 (572)
T PLN02221 342 HTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIE 421 (572)
T ss_pred CCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHH
Confidence 99999999999999999999999999999999999999999888887665433333344556555678999999999999
Q ss_pred HHHHh---ccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechh
Q 011364 339 LLIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGS 415 (487)
Q Consensus 339 ~l~~~---~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~ 415 (487)
+|++. |.+++....||.+++.++|++|.+.++. +|+||+|||.+++||||+.++++..++|||||++|+|||++|+
T Consensus 422 ~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~-~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~~g~ 500 (572)
T PLN02221 422 LLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQ-KPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGS 500 (572)
T ss_pred HHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcC-CcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEECCHH
Confidence 99874 4444444679999999999999886555 7999999999999999887777788899999999999999999
Q ss_pred HhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011364 416 QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487 (487)
Q Consensus 416 ~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~~ 487 (487)
+|+++++.+++++++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|.+
T Consensus 501 ~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~~~ 572 (572)
T PLN02221 501 QREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKADL 572 (572)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-106 Score=854.93 Aligned_cols=477 Identities=45% Similarity=0.840 Sum_probs=417.2
Q ss_pred CCccccceeeccccCCCCCCCCCCCCEEEEEEEEeeeec-----------------------------------------
Q 011364 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA----------------------------------------- 43 (487)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~----------------------------------------- 43 (487)
..||..++.++-|+...+++...+|+.|+|.|||++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (633)
T PLN02532 23 PSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFR 102 (633)
T ss_pred chhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHH
Confidence 468899999999998877788899999999999987543
Q ss_pred -----------------------------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEee
Q 011364 44 -----------------------------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (487)
Q Consensus 44 -----------------------------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~ 94 (487)
+|+++||+||||+|.++||||+++....+. +. |+.|++|.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~--L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 103 SIAKVLSGGGSTYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLT--QL--MATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHcCCCCCCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHh--hc--CCCceEEEEEEEEEe
Confidence 338999999999998889999987644332 45 999999999999998
Q ss_pred cCC--CCceEEEEEeEEEEEccCCC-CCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEe
Q 011364 95 SQG--SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWIS 171 (487)
Q Consensus 95 ~~~--~~~~~el~~~~i~vls~~~~-~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~ 171 (487)
++. .++++||.+++|.||+++.. ++|++++.++.+++|++||||+|++.++++||+||++++++|+||.++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 843 36789999999999999864 499998888999999999999999999999999999999999999999999999
Q ss_pred CCeeeccCCCCCCCCceeeecCCCcccc---------cC-C-------------CCC-----------------------
Q 011364 172 SPIITASDCEGAGEQFCVTTLIPSSREA---------AE-S-------------PVD----------------------- 205 (487)
Q Consensus 172 TP~L~~~~~eg~~~~F~vt~~~~~~~~~---------~~-~-------------~~~----------------------- 205 (487)
||+|++++|||+++.|.||++.....++ +. + .++
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 9999999999999999998754211100 00 0 000
Q ss_pred -------------CCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCCCcccccccceee
Q 011364 206 -------------AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 272 (487)
Q Consensus 206 -------------~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~ 272 (487)
...++..+..+++.+||++++||+||||||||++++|++|||+||||||||+++|+|||+||||||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~ 418 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEV 418 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceee
Confidence 0111223334466789999999999999999988899999999999999999999999999999999
Q ss_pred EEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhc-ccccccc
Q 011364 273 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLV 351 (487)
Q Consensus 273 e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~-~~~~~~~ 351 (487)
|++|+|++|+|+++|+||+++++.+.++|.+++.+++...+....+.++..+..||+||||.||+++|++.+ .+++...
T Consensus 419 Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~ 498 (633)
T PLN02532 419 EMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKP 498 (633)
T ss_pred eehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999998888877654444455566666778999999999999998763 3444456
Q ss_pred ccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc
Q 011364 352 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431 (487)
Q Consensus 352 ~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~ 431 (487)
.||.||+.++|++|++.+++ +|+||+|||.+++||||+.++|+.++++|||+++|+|||+||++|+||++.+.+++++.
T Consensus 499 ~~g~dL~~e~Er~L~~~~~~-~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~ 577 (633)
T PLN02532 499 EWGIALTTEHLSYLADEIYK-KPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEEL 577 (633)
T ss_pred ccCCccChHHHHHHHHHHcC-CCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHc
Confidence 89999999999999987665 89999999999999999988888899999999999899999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 432 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 432 g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++|+|.
T Consensus 578 Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~ 632 (633)
T PLN02532 578 GLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKAN 632 (633)
T ss_pred CCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCC
Confidence 9999999999999999999999999999999999999999999999999999985
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-105 Score=839.70 Aligned_cols=447 Identities=57% Similarity=0.965 Sum_probs=400.0
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc--cchHhHhccCCCCCcEEEEEe
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQG 90 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~--~~~~~~~~~~L~~gd~V~V~G 90 (487)
+|+++... ..++.|++|+|+|||+++|.+||++|++|||+++.+.||||++++. ..++.++. |+.||+|.|+|
T Consensus 3 ~~~~~~~~---~~~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~--l~~gs~V~v~G 77 (453)
T TIGR00457 3 AIKDLLQQ---VYKFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKS--LTTGSSVSVTG 77 (453)
T ss_pred cHHHHHhc---chhcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHc--CCCCcEEEEEE
Confidence 45555542 1247799999999999999999999999999994446999998763 22455667 99999999999
Q ss_pred eEeecCCCCceEEEEEeEEEEEccCC-CCCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEE
Q 011364 91 NVVPSQGSKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169 (487)
Q Consensus 91 ~~~~~~~~~~~~el~~~~i~vls~~~-~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~E 169 (487)
++.+++.+.+++||.+++++||++|. ..+|++.+.++.++++++||||+|++.++++|++||.|++++|+||.++||+|
T Consensus 78 ~v~~~~~~~~~~El~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~e 157 (453)
T TIGR00457 78 KVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTW 157 (453)
T ss_pred EEEcCCCCCCCEEEEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 99998766778999999999999997 34899888888999999999999999999999999999999999999999999
Q ss_pred EeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEE
Q 011364 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249 (487)
Q Consensus 170 V~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI 249 (487)
|+||+|++++|||++++|.++..+. ....+||+.++||++|||+|||++++|++|||||
T Consensus 158 V~TP~l~~~~~eg~~~~F~v~~~~~---------------------~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i 216 (453)
T TIGR00457 158 VSPPILTSNDCEGAGELFRVSTDGI---------------------DFSQDFFGKEAYLTVSGQLYLETYALALSKVYTF 216 (453)
T ss_pred ecCCeEeecCCCCCCCceEeccccc---------------------ccchhccCCccccccCHHHHHHHHhhcccCceEe
Confidence 9999999999999999998743221 0124699999999999999999889999999999
Q ss_pred ecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCc
Q 011364 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFV 329 (487)
Q Consensus 250 ~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 329 (487)
+||||||+++++||||||||||||++|+|++|+|+++|++|+++++.+.+.+..+++..+......+...+++.++.||+
T Consensus 217 ~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (453)
T TIGR00457 217 GPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFA 296 (453)
T ss_pred eeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCc
Confidence 99999999988999999999999999999999999999999999999998887777666554445566777778889999
Q ss_pred ccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCee
Q 011364 330 QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIG 409 (487)
Q Consensus 330 ~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~ 409 (487)
++||.||+++|++.+..++....||.+|+.++|++|++.++. +|+||||||.+++|||++.++++++++||||+++|+|
T Consensus 297 rit~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~~~-~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~g 375 (453)
T TIGR00457 297 RITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFK-PPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIG 375 (453)
T ss_pred eeEHHHHHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHhCC-CCEEEECCCcccChhhcccCCCcCceeeeeeccCCce
Confidence 999999999999886554445679999999999999988765 7999999999999999877777789999999999989
Q ss_pred eeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 410 ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 410 El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
||+|||+|+|+++++.+++++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|.
T Consensus 376 Ei~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~~ 452 (453)
T TIGR00457 376 EIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNIN 452 (453)
T ss_pred EEeehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-104 Score=834.56 Aligned_cols=445 Identities=62% Similarity=1.056 Sum_probs=400.5
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc--cchHhHhccCCCCCcEEEE
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWI 88 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~--~~~~~~~~~~L~~gd~V~V 88 (487)
+.+|+++... ++.|++|+|+|||+++|.+||++|++|||++|. +|+++..+. ..++.++. |+.||+|.|
T Consensus 3 ~~~~~~~~~~-----~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~--l~~~s~v~v 73 (450)
T PRK03932 3 RVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKK--LTTGSSVIV 73 (450)
T ss_pred cEEHHHhccc-----ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCc--EEEEEEcCCChHHHHHHhc--CCCCcEEEE
Confidence 4567888633 578999999999999999999999999999975 777776442 34667777 999999999
Q ss_pred EeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeE
Q 011364 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (487)
Q Consensus 89 ~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~ 168 (487)
+|++.+++++.+++||++++++||++|...+|++.+.++.++++++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 74 ~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~ 153 (450)
T PRK03932 74 TGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153 (450)
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 99999998877899999999999999876799998888999999999999999999999999999999999999999999
Q ss_pred EEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEE
Q 011364 169 WISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYT 248 (487)
Q Consensus 169 EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfe 248 (487)
||+||+|++++|||++++|.+.+... ....+||+.++||++|||+|||++++|++||||
T Consensus 154 EV~TP~L~~~~~eg~~~~F~v~~~~~---------------------~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~ 212 (450)
T PRK03932 154 WVDTPIITASDCEGAGELFRVTTLDL---------------------DFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYT 212 (450)
T ss_pred EecCCceeccCCCCCCCceEeecccc---------------------cccccccCCCcccccCHHHHHHHHHhccCCeEE
Confidence 99999999999999999998743210 011369999999999999999988899999999
Q ss_pred EecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCC
Q 011364 249 FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 328 (487)
Q Consensus 249 I~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 328 (487)
|+||||||+++|+||||||||||||++|+|++++|+++|+||+++++.+.+.+..++++.+.+.+.+..+.++..++.||
T Consensus 213 i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~ 292 (450)
T PRK03932 213 FGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPF 292 (450)
T ss_pred eeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCc
Confidence 99999999998999999999999999999999999999999999999999888888888777665555555555567899
Q ss_pred cccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCe
Q 011364 329 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 408 (487)
Q Consensus 329 ~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~ 408 (487)
+++||.||++++++.+.+++....||.+++..+|++|.++++. +|+||+|||.+++|||++.++++++++||||++||+
T Consensus 293 ~rity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~-~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl~~g~ 371 (450)
T PRK03932 293 PRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGI 371 (450)
T ss_pred eEeEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHHHhcC-CcEEEECCCcccCcccCcCCCCCCEEEEEEEEcCCC
Confidence 9999999999999887766555589999999999999885555 799999999999999987766568999999999999
Q ss_pred eeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 409 GELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 409 ~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|||+||++|+++++++.+++++.|++++.++||+++++||+|||||||||||||+|++||.+|||||++|||++++|.
T Consensus 372 ~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r~~ 449 (450)
T PRK03932 372 GEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAE 449 (450)
T ss_pred ceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-103 Score=768.07 Aligned_cols=428 Identities=59% Similarity=0.999 Sum_probs=405.3
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEE
Q 011364 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (487)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~ 105 (487)
...+++++|.|||+++|..|+++|++|+||++.++||||+++. +.+. +.+|+.|.|+|.+.-++.+++++|+.
T Consensus 17 ~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~-----~~q~--la~Gt~i~~~g~l~~~~~~~q~iel~ 89 (446)
T KOG0554|consen 17 PRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE-----QSQL--LATGTCISAEGVLKVSKGAKQQIELN 89 (446)
T ss_pred CCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH-----Hhhh--ccccceEEEEeeEEeccchheeeeee
Confidence 5789999999999999999999999999999999999999983 2345 99999999999999998788899999
Q ss_pred EeEEEEEccCCCCCCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCC
Q 011364 106 VNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185 (487)
Q Consensus 106 ~~~i~vls~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~ 185 (487)
+++|.+++.++++||++++.++++++|+..|||.|++...+++|+||.+..++++||.+++|++|+||+||+++|||+++
T Consensus 90 ~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE 169 (446)
T KOG0554|consen 90 AEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGE 169 (446)
T ss_pred eeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCCCcccc
Q 011364 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265 (487)
Q Consensus 186 ~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t~rHl~ 265 (487)
.|.||+..+ .+.+||++|+||++|.|||++.++++++|||.+||+||+|+++++|||.
T Consensus 170 ~F~vtt~~d----------------------~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLA 227 (446)
T KOG0554|consen 170 VFQVTTLTD----------------------YSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLA 227 (446)
T ss_pred eEEEEecCc----------------------ccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHh
Confidence 999986542 3468999999999999999999999999999999999999999999999
Q ss_pred cccceeeEEccCC-HHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhc
Q 011364 266 EFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 344 (487)
Q Consensus 266 EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~ 344 (487)
||||||.|+||++ ++|+|+++|.+++++++.++++|.+++++..++..+.....++..+..+|.++||.||+++|++..
T Consensus 228 EFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~ 307 (446)
T KOG0554|consen 228 EFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAV 307 (446)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhc
Confidence 9999999999998 999999999999999999999999999998888888888888888888899999999999999887
Q ss_pred -cccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHH
Q 011364 345 -KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEY 423 (487)
Q Consensus 345 -~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~ 423 (487)
.+++.+++||.+|++++|++|++.+++ .||||+|||..++||||+.++++.++.+|||++||||||+|||+|+.|
T Consensus 308 t~~fk~~~kwG~~l~~ehe~yL~~~~~~-~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~--- 383 (446)
T KOG0554|consen 308 TKKFKTPPKWGIDLSTEHEKYLVEECFK-KPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREER--- 383 (446)
T ss_pred ccccccCcccccccchhhHHHHHHHhcC-CCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhh---
Confidence 667778899999999999999998886 899999999999999999998888999999999999999999999988
Q ss_pred HHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011364 424 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487 (487)
Q Consensus 424 ~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~~ 487 (487)
.+++++.|..++.++||||+++||.+||||||||+||++.+++|.+||||||||||.|+.|++
T Consensus 384 -~~~l~e~g~~~~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~~~ 446 (446)
T KOG0554|consen 384 -KARLKERGLTREELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSAEL 446 (446)
T ss_pred -HHHHHhcCCCccccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccccC
Confidence 567788999999999999999999999999999999999999999999999999999999864
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-100 Score=793.88 Aligned_cols=418 Identities=30% Similarity=0.487 Sum_probs=371.4
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcEEEEE
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~V~V~ 89 (487)
.+++|... +.|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..++.++. |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~~s~v~v~ 71 (428)
T TIGR00458 2 YSADIKPE------MDGQEVTFMGWVHEIRDLGGLIFVLLRDREG--LIQITAPAKKVSKNLFKWAKK--LNLESVVAVR 71 (428)
T ss_pred chhhCchh------hCCCEEEEEEEEEEEecCCCcEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhC--CCCCcEEEEE
Confidence 45666543 6789999999999999999999999999997 4999998653 23566667 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEccCCCCCCCCcccc---ChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCC
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~---~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~g 166 (487)
|++++++...+++||.+++++|||+|..++|++.+.. +.+...++||||+|++.++++|++||.|++++|+||.++|
T Consensus 72 G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~g 151 (428)
T TIGR00458 72 GIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEG 151 (428)
T ss_pred EEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887766789999999999999976788876543 4555668999999999999999999999999999999999
Q ss_pred eEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH-HHhccCCc
Q 011364 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSN 245 (487)
Q Consensus 167 F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~g~~k 245 (487)
|+||+||+|+++++||+++.|.+ +||+.++||++|||+||| ++++|++|
T Consensus 152 f~EV~TP~L~~~~~eg~~~~f~v------------------------------~~~~~~~yL~~Spql~~q~li~~g~~r 201 (428)
T TIGR00458 152 FIEVHTPKLVASATEGGTELFPI------------------------------TYFEREAFLGQSPQLYKQQLMAAGFER 201 (428)
T ss_pred CEEEeCCceecCCCCCCcceeee------------------------------EecCCcEEECcCHHHHHHHHHhcccCc
Confidence 99999999999999999999975 477899999999999997 67899999
Q ss_pred eEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhc
Q 011364 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 325 (487)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 325 (487)
|||||||||||+++|+||||||||||||++|+|++|+|+++|+||+++++.+.+.+..++...+.. + ....
T Consensus 202 Vf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~--------~-~~~~ 272 (428)
T TIGR00458 202 VYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFK--------L-EKPE 272 (428)
T ss_pred EEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccc--------c-ccCC
Confidence 999999999999988899999999999999999999999999999999999998876655433210 0 0124
Q ss_pred CCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCcccccccc-CCCCceEEEEEE
Q 011364 326 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDML 404 (487)
Q Consensus 326 ~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~-~~~~~~~~fdl~ 404 (487)
.||+++||.||++++++.|.+ ..||.+++..+|++|.+.+ . +|+||+|||.+++|||++.+ +++++++|||||
T Consensus 273 ~pf~rity~eA~~~l~~~g~~----~~~~~~l~~~~E~~l~~~~-~-~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~ 346 (428)
T TIGR00458 273 GKFVRLTYDEAIEMANAKGVE----IGWGEDLSTEAEKALGEEM-D-GLYFITDWPTEIRPFYTMPDEDNPEISKSFDLM 346 (428)
T ss_pred CCceEEEHHHHHHHHHHcCCC----CCCccccchHHHHHHHHHh-C-CCEEEEeCchhcCcccccccCCCCCEEEEEEEE
Confidence 589999999999999887764 4688899999999998755 3 79999999999999997654 456799999999
Q ss_pred ecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 405 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 405 ~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
++|+ ||+||++|+++++++++++++.|++++.++|||+|++||+|||||||||+|||+|++||.+|||||++|||++++
T Consensus 347 ~~g~-Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr~~~r 425 (428)
T TIGR00458 347 YRDL-EISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDRKR 425 (428)
T ss_pred eCCe-EEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccCCCCC
Confidence 9995 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 011364 485 VE 486 (487)
Q Consensus 485 ~~ 486 (487)
|.
T Consensus 426 ~~ 427 (428)
T TIGR00458 426 LT 427 (428)
T ss_pred CC
Confidence 85
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-100 Score=796.21 Aligned_cols=423 Identities=31% Similarity=0.546 Sum_probs=375.3
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc--cchHhHhccCCCCCcEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~--~~~~~~~~~~L~~gd~V~ 87 (487)
++|+|+|+... ..|++|+|+|||+++|.+||++|++|||++| .||||++.+. ..++.++. |+.||+|.
T Consensus 3 ~~~~~~~l~~~------~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g--~iQ~v~~~~~~~~~~~~~~~--L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELTPE------LDGEEVTLAGWVHEIRDLGGIAFLILRDRSG--IIQVVVKKKVDEELFETIKK--LKRESVVS 72 (437)
T ss_pred ceeEhhhCChh------hCCCEEEEEEEeEeeecCCCeEEEEEEcCCc--EEEEEEeCCccHHHHHHHhC--CCCCcEEE
Confidence 68899999874 6799999999999999999999999999997 4999998763 23455677 99999999
Q ss_pred EEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCcc---ccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhc
Q 011364 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK---RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (487)
Q Consensus 88 V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~---~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (487)
|+|++.+++...+++||++++++|||+|..++|+... ..+.+.++++||||+|++.++++|++||.|++++|+||.+
T Consensus 73 v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~ 152 (437)
T PRK05159 73 VTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE 152 (437)
T ss_pred EEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987677899999999999999866887533 2356778899999999999999999999999999999999
Q ss_pred CCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHH-HhccC
Q 011364 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATAL 243 (487)
Q Consensus 165 ~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~l-l~~g~ 243 (487)
+||+||+||+|++++++|+++.|.+ +||+.++||++|||+|||+ +++|+
T Consensus 153 ~gf~EV~TP~L~~~~~eg~~~~f~~------------------------------~~~~~~~~L~~Spql~~q~l~~~g~ 202 (437)
T PRK05159 153 NGFTEIFTPKIVASGTEGGAELFPI------------------------------DYFEKEAYLAQSPQLYKQMMVGAGF 202 (437)
T ss_pred CCCEEEeCCcccccCCCCCcceEeE------------------------------EecCCceEecCCHHHHHHHHHhcCC
Confidence 9999999999999999999998865 5789999999999999975 56779
Q ss_pred CceEEEecccccCCCCCCcccccccceeeEEccCC-HHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhh
Q 011364 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 322 (487)
Q Consensus 244 ~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 322 (487)
+|||||+||||||++++.||||||||||||++|+| ++++|+++|+||+++++.+.+.+..++.+.+.. + .
T Consensus 203 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~--------~-~ 273 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIE--------L-P 273 (437)
T ss_pred CcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccC--------C-C
Confidence 99999999999999987899999999999999998 999999999999999999988776666544321 1 1
Q ss_pred hhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhcc---ccCccEEEEecCCcCccccccccC-CCCce
Q 011364 323 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA---FGGCPVIVSDYPKEIKAFYMRQND-DGRTV 398 (487)
Q Consensus 323 ~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~---~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~ 398 (487)
..+.||+++||.||++++++.+.+ ..||.+++.+.|+.|.+.+ +...|+||+|||.+++|||++.++ +++++
T Consensus 274 ~~~~~f~rit~~eA~~~l~~~~~~----~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~ 349 (437)
T PRK05159 274 VPETPIPRITYDEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEIS 349 (437)
T ss_pred cCCCCceEeEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEE
Confidence 234689999999999999887753 4578889999998876433 111389999999999999987654 45789
Q ss_pred EEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 399 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 399 ~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
+|||||++|+ ||+||++|++++++++++++++|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|
T Consensus 350 ~~fdl~~~g~-Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~F 428 (437)
T PRK05159 350 KSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLF 428 (437)
T ss_pred EEEEEEECCE-EEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeec
Confidence 9999999997 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 011364 479 PRTPGSVE 486 (487)
Q Consensus 479 Pr~~~~~~ 486 (487)
||+|++|.
T Consensus 429 Pr~~~~~~ 436 (437)
T PRK05159 429 PRDRHRLT 436 (437)
T ss_pred cCCCCCCC
Confidence 99999985
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-97 Score=784.06 Aligned_cols=430 Identities=26% Similarity=0.415 Sum_probs=366.0
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc----cchHhHhccCCCCCcEE
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGASI 86 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~----~~~~~~~~~~L~~gd~V 86 (487)
.+.|++|... ...|+.|+|+|||+++|.+||++|++|||+++ +||+|++.+. ..++.+.. |+.||+|
T Consensus 65 ~~~i~~l~~~-----~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~--~iQ~v~~~~~~~~~~~~~~~~~--l~~esiV 135 (550)
T PTZ00401 65 FIPVAVLSKP-----ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSD--SVQAMAAVEGDVPKEMIDFIGQ--IPTESIV 135 (550)
T ss_pred eEEHHHCCcc-----ccCCCEEEEEEEEEEEecCCCeEEEEEEeCCc--CEEEEEECCCccCHHHHHHHhc--CCCCCEE
Confidence 4778888653 23799999999999999999999999999997 5999997442 12444667 9999999
Q ss_pred EEEeeEeecC-----CCCceEEEEEeEEEEEccCCCCCCCCcccc-----------ChhhhhhcccccCCChhhHHHHHH
Q 011364 87 WIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRV-----------SREFLRTKAHLRPRTNTFGAVARV 150 (487)
Q Consensus 87 ~V~G~~~~~~-----~~~~~~el~~~~i~vls~~~~~~p~~~~~~-----------~~~~~r~~r~l~~R~~~~~~~~~~ 150 (487)
.|+|+|++.+ +..+++||++++++|||+|...+|++.++. +.+...++||||+|++.++++|++
T Consensus 136 ~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~ 215 (550)
T PTZ00401 136 DVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRL 215 (550)
T ss_pred EEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHH
Confidence 9999999742 345789999999999999987788875432 345555999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
||.|++++|+||.++||+||+||+|+++++||+++.|.+ +||+.++||+|
T Consensus 216 rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v------------------------------~yf~~~~~L~q 265 (550)
T PTZ00401 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL------------------------------EYFNRFAYLAQ 265 (550)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc------------------------------ccCCCCeecCC
Confidence 999999999999999999999999999999999999975 58899999999
Q ss_pred chhhhHHHHh-ccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHHHHHHhhccCccccccc
Q 011364 231 SGQLNAETYA-TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFF 308 (487)
Q Consensus 231 Spql~l~ll~-~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~ 308 (487)
|||||||+++ +|++||||||||||||+++|+||||||||||||++|. +|+++|+++|+||.+++..+.+.+ .++...
T Consensus 266 Spql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~-~ei~~~ 344 (550)
T PTZ00401 266 SPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHT-KELKAV 344 (550)
T ss_pred CHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHccc-hhhhhh
Confidence 9999998655 6899999999999999999899999999999999986 799999999999999999887652 232222
Q ss_pred cc---c-----cc--------------------chhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchH
Q 011364 309 NT---W-----IE--------------------KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360 (487)
Q Consensus 309 ~~---~-----~~--------------------~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~ 360 (487)
.. + .. ..+.+.+.. ++.+|+||+|.||+++|++.+. ....|+.|++++
T Consensus 345 ~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~---~~~~~~~dl~~~ 420 (550)
T PTZ00401 345 CQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE---EKMAPTDDINTT 420 (550)
T ss_pred ccccccccccccccHHHHHhcCCCcccccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc---cCCCcccccCch
Confidence 10 0 00 011122222 3567999999999999998752 224678899999
Q ss_pred HHhhhh---hccccCccEEEEe-cCCcCcccccccc-CCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCc
Q 011364 361 HERYLT---EEAFGGCPVIVSD-YPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 435 (487)
Q Consensus 361 ~e~~l~---e~~~~~~p~fi~~-~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~ 435 (487)
.|++|. ++.++ .|+||+| ||.+++|||++.+ +|+++++|||||++| +||+||++|+||+++|.+++++.|+++
T Consensus 421 ~E~~L~~~v~~~~~-~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~G-~EI~sG~qR~~d~~~l~~r~~~~G~d~ 498 (550)
T PTZ00401 421 NEKLLGKLVKERYG-TDFFISDRFPSSARPFYTMECKDDERFTNSYDMFIRG-EEISSGAQRIHDPDLLLARAKMLNVDL 498 (550)
T ss_pred HHHHHHHHHHHhcC-CCEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeCC-EEEccchhhcCCHHHHHHHHHHcCCCc
Confidence 999874 44444 7999998 9999999986554 566899999999999 599999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 436 DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 436 ~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
..++|||++++||+|||||||||+|||+|++||.+|||||++|||+|+||.
T Consensus 499 ~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp~rl~ 549 (550)
T PTZ00401 499 TPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQRTT 549 (550)
T ss_pred hhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999984
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-96 Score=781.13 Aligned_cols=426 Identities=27% Similarity=0.454 Sum_probs=364.7
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc-----chHhHhccCCCCCcE
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVKSGLITTGAS 85 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~-----~~~~~~~~~L~~gd~ 85 (487)
.+.|++|.. ++.|+.|+|+|||+++|.+||++|++|||+++ +||||+..+.. .++.+.. |+.||+
T Consensus 69 ~~~i~~l~~------~~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~ 138 (530)
T PLN02850 69 WTDVSDLGE------ELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGF--TVQCVVFVSEVTVSKGMVKYAKQ--LSRESV 138 (530)
T ss_pred EeEhhhcch------hhCCCEEEEEEEEEEEccCCCeEEEEEEeCCc--CEEEEEECCccccCHHHHHHHhC--CCCCCE
Confidence 466777765 37899999999999999999999999999986 59999986531 1344566 999999
Q ss_pred EEEEeeEeecC----CCCceEEEEEeEEEEEccCCCCCCCCccc--------------------cChhhhhhcccccCCC
Q 011364 86 IWIQGNVVPSQ----GSKQKVELKVNKIVLVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPRT 141 (487)
Q Consensus 86 V~V~G~~~~~~----~~~~~~el~~~~i~vls~~~~~~p~~~~~--------------------~~~~~~r~~r~l~~R~ 141 (487)
|.|+|+|++.+ +.++++||++++|+|||+|...+|++.++ .+.+...++||||+|+
T Consensus 139 V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~ 218 (530)
T PLN02850 139 VDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRT 218 (530)
T ss_pred EEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcC
Confidence 99999999542 23458999999999999998778886543 1234455899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 142 ~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
+.++++||+||.|++.+|+||.++||+||+||+|+++++||++++|.+ +|
T Consensus 219 ~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v------------------------------~y 268 (530)
T PLN02850 219 PANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL------------------------------DY 268 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee------------------------------cc
Confidence 999999999999999999999999999999999999999999999975 58
Q ss_pred cCcccccccchhhhHHH-HhccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHHHHHHhhc
Q 011364 222 FEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILD 299 (487)
Q Consensus 222 ~~~~~~L~~Spql~l~l-l~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~~~~ 299 (487)
|++++||++|||||||+ +++|++||||||||||||+++|+|||||||||||||+|. +|+|+|+++|+||++++..+.+
T Consensus 269 f~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~ 348 (530)
T PLN02850 269 KGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNE 348 (530)
T ss_pred CCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999974 678999999999999999999999999999999999998 5999999999999999999988
Q ss_pred cCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhh---ccccCccEE
Q 011364 300 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVI 376 (487)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~f 376 (487)
.+..++..+...... +.+ +.+ .++++++|.||+++|++.|.+. .++.|++.+.|+.|.. ..++..++|
T Consensus 349 ~~~~el~~i~~~~~~---~~~-~~~-~~~~rit~~ea~~~L~~~g~~~----~~~~dl~~~~E~~Lg~~v~~~~~~~~~i 419 (530)
T PLN02850 349 RCKKELEAIREQYPF---EPL-KYL-PKTLRLTFAEGIQMLKEAGVEV----DPLGDLNTESERKLGQLVKEKYGTDFYI 419 (530)
T ss_pred hhhhhHHhhcccCCc---chh-hhc-CCcccCCHHHHHHHHHHcCCCC----CCCCCcchHHHHHHHHHHHHhcCCCeEE
Confidence 776666544321110 111 112 2678999999999999987643 3567899999987743 223313577
Q ss_pred EEecCCcCcccccccc-CCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccce
Q 011364 377 VSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 455 (487)
Q Consensus 377 i~~~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~ 455 (487)
|+|||.+++|||++.+ +|+++++|||||++| +||+||++|+|+++.|++++++.|++++.++|||++++||+||||||
T Consensus 420 i~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G-~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~ 498 (530)
T PLN02850 420 LHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRG-EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGF 498 (530)
T ss_pred EECCccccCchhccccCCCCCeEEEEEEEeCC-EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCceE
Confidence 8999999999986554 566899999999999 59999999999999999999999999999999999999999999999
Q ss_pred eccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 456 GLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 456 giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|||||||+||+||++|||||++|||+|++|.
T Consensus 499 GiGlERLvM~l~g~~nIr~v~~FPR~p~rl~ 529 (530)
T PLN02850 499 GVGLERVVMLFCGLNNIRKTSLFPRDPQRLA 529 (530)
T ss_pred EEcHHHHHHHHcCCCchheEeecCCCCCCCC
Confidence 9999999999999999999999999999984
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-95 Score=770.02 Aligned_cols=440 Identities=20% Similarity=0.272 Sum_probs=376.6
Q ss_pred CCCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc-----chHh
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQ 74 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~-----~~~~ 74 (487)
|+.|+|.++++++|+.+.|.+ +.+..++.|+|+|||+++|.+||++|++|+|++| .||||++.+.. .|..
T Consensus 79 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g--~iQv~~~~~~~~~~~~~~~~ 156 (553)
T PLN02502 79 PYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGG--KIQLYADKKRLDLDEEEFEK 156 (553)
T ss_pred CCCCCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCc--cEEEEEECccccchhHHHHH
Confidence 788999999999999887753 4456788999999999999999999999999996 59999986532 2555
Q ss_pred H-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHH
Q 011364 75 V-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVAR 149 (487)
Q Consensus 75 ~-~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~ 149 (487)
+ +. |+.||+|+|+|++.+++++ ++||.+++++|||+|. .|+|.+.++ .+...++||||++ ++..+++|+
T Consensus 157 ~~~~--l~~gdiV~V~G~~~~t~~g--elel~~~~i~vLs~~l--~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r 230 (553)
T PLN02502 157 LHSL--VDRGDIVGVTGTPGKTKKG--ELSIFPTSFEVLTKCL--LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFR 230 (553)
T ss_pred HHhC--CCCCcEEEEEEEEEecCCC--CEEEEEeEEEEEeccC--CCCCcccccccchhhhccchhhhhhcCHHHHHHHH
Confidence 5 35 9999999999999998865 8999999999999997 566666554 3334479999995 889999999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc
Q 011364 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (487)
+||+|+++||+||.++||+||+||+|+++++++++.+|. |++ ++|+.++||+
T Consensus 231 ~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~ 282 (553)
T PLN02502 231 TRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFV-THH---------------------------NDLNMDLYLR 282 (553)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeeccCCCcccccee-eec---------------------------ccCCcceeee
Confidence 999999999999999999999999999987766778895 432 3678999999
Q ss_pred cchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCc-----c
Q 011364 230 VSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----E 303 (487)
Q Consensus 230 ~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~-----~ 303 (487)
+|||||| +|+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||+++++.+.+.+. .
T Consensus 283 ~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~ 361 (553)
T PLN02502 283 IATELHLKRLVVGGFERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGI 361 (553)
T ss_pred cCHHHHHHHHHHhccCCEEEEcCeeeCCCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCc
Confidence 9999998 57889999999999999999995 699999999999999999999999999999999999986653 3
Q ss_pred ccccccccccchhhhhhhhhhcCCCcc-cCHHHHHHHHHH----hccccccccccccccchHHHhhhhhccccCccEEEE
Q 011364 304 DMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLIK----AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVS 378 (487)
Q Consensus 304 ~l~~~~~~~~~~~~~~l~~~~~~~~~~-it~~ea~~~l~~----~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~ 378 (487)
++++..+|.+.++.+.++++.+.+|+. +++.++.+.|.+ .++++.....||..+...++.++.+.+ . +|+||+
T Consensus 362 ~i~~~~p~~rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l-~-~PtFV~ 439 (553)
T PLN02502 362 EIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETL-V-QPTFVL 439 (553)
T ss_pred cccCCCCceeccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhc-C-CCEEEE
Confidence 456667788888999999988888877 888888765543 455444445788888888888877654 4 799999
Q ss_pred ecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc----CC-Ccc--cH-HHHHHHHhcCCC
Q 011364 379 DYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL----KL-NRD--SY-WWYLDLRHYGSV 450 (487)
Q Consensus 379 ~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~----g~-~~~--~~-~~yl~~~~~G~p 450 (487)
|||.+++|||++.++++++++|||||++|+ ||+||+++++|+.+|++++.++ +. +.+ .+ ++||+|++||||
T Consensus 440 dyP~~~splak~~~~~p~~~erFELfi~G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmP 518 (553)
T PLN02502 440 DHPVEMSPLAKPHRSKPGLTERFELFINGR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLP 518 (553)
T ss_pred CCccccCcccccCCCCCCeEEEEEEEeCCe-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCC
Confidence 999999999987777889999999999997 9999999999999888777532 22 111 23 569999999999
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
||||||||||||+|+|||..|||||++||+..
T Consensus 519 P~gG~GiGiDRLvMlltg~~sIrdVi~FP~~k 550 (553)
T PLN02502 519 PTGGWGLGIDRLVMLLTDSASIRDVIAFPAMK 550 (553)
T ss_pred CCceEEehHHHHHHHHcCCcchheeecCCcCC
Confidence 99999999999999999999999999999865
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-95 Score=765.96 Aligned_cols=430 Identities=20% Similarity=0.319 Sum_probs=356.1
Q ss_pred CCCCccccceeeccccCCCCC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhH
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV 75 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~----~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~ 75 (487)
|+.++|.++++++++.+.|.+ .....++.|+|+|||+++|.+||++|++|+|++| .||+|++.+.. .++.+
T Consensus 23 ~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g--~iQ~~~~~~~~~~~~~~~~ 100 (496)
T TIGR00499 23 PYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESG--QIQLYVNKDDLPEDFYEFD 100 (496)
T ss_pred CCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCc--cEEEEEECCcCcHHHHHHH
Confidence 788999999999999887753 1124478899999999999999999999999996 49999987542 23333
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccCh---hhhhhcccccCCC-hhhHHHHHHH
Q 011364 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPRT-NTFGAVARVR 151 (487)
Q Consensus 76 ~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~---~~~r~~r~l~~R~-~~~~~~~~~R 151 (487)
+. .|+.||+|.|+|++.+++++ ++||++++++|||+|. .|+|.+.++. +...++||||+|. +.++++|++|
T Consensus 101 ~~-~l~~gd~V~v~G~~~~t~~g--elel~~~~i~ilsk~~--~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~R 175 (496)
T TIGR00499 101 EY-LLDLGDIIGVTGYPFKTKTG--ELSVHVTELQILTKAL--RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVR 175 (496)
T ss_pred Hh-cCCCCCEEEEEEEEEECCCC--cEEEEeeEEEEEecCC--CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHH
Confidence 32 28999999999999998764 7999999999999997 5666665543 4445799999995 6999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
|+|++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||++|
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t-~~---------------------------~~~~~~~yLriS 227 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFIT-HH---------------------------NALDMDLYLRIA 227 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEe-ec---------------------------ccCCCceEEecC
Confidence 99999999999999999999999999887777789953 33 246899999999
Q ss_pred hhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccc
Q 011364 232 GQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 310 (487)
Q Consensus 232 pql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~ 310 (487)
||||| +|+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||+++++.+.+.+...+. +
T Consensus 228 pELylKrlivgG~~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~--~- 303 (496)
T TIGR00499 228 PELYLKRLIVGGFEKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYG--E- 303 (496)
T ss_pred HHHHHHHHHhCCCCceEEEecceecCCCC-CcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecC--c-
Confidence 99998 57899999999999999999995 6999999999999999999999999999999999999866543211 0
Q ss_pred cccchhhhhhhhhhcCCCcccCHHHHHHHHHH-hccc--------------------c-ccccccccccchHHHhhhhhc
Q 011364 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-AKKK--------------------F-EFLVKWGCDLQSEHERYLTEE 368 (487)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-~~~~--------------------~-~~~~~~~~~l~~~~e~~l~e~ 368 (487)
....+..||+++||.||++++.+ .|++ + .....||..+...++.++.+.
T Consensus 304 ---------~~~~~~~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~ 374 (496)
T TIGR00499 304 ---------LEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHT 374 (496)
T ss_pred ---------eeccCCCCceEEEHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhc
Confidence 00123457888888888886642 2321 1 111234555666677766544
Q ss_pred cccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHH------HcCCCcccH--HH
Q 011364 369 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--WW 440 (487)
Q Consensus 369 ~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~------~~g~~~~~~--~~ 440 (487)
+. +|+||+|||.+++||+++.++++.+++|||||++|+ ||+||++|++|+.+|+++++ +.|.+++.+ +|
T Consensus 375 -l~-~P~fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~ 451 (496)
T TIGR00499 375 -LI-QPTFITHYPAEISPLAKRNPSNPEFTDRFELFIAGK-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDED 451 (496)
T ss_pred -cC-CCEEEECCchhcCcccccCCCCCCeEEEEEEEeCCe-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHH
Confidence 44 799999999999999776666678999999999997 99999999999999998865 457776654 79
Q ss_pred HHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 441 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 441 yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
||+|++||||||||||||||||+|++||.+|||||++||+...
T Consensus 452 yl~a~~~G~PP~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 452 FVEALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred HHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 9999999999999999999999999999999999999999864
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-94 Score=761.63 Aligned_cols=428 Identities=20% Similarity=0.321 Sum_probs=352.4
Q ss_pred CCCCccccceeeccccCCCCC--CC--CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchH-h
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE--GL--DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-Q 74 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~--~~--~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~-~ 74 (487)
|+.++|.++++++++.+.|.+ .+ ...++.|+|+|||+++|.+||++|++|+|++| +||||++.+. ..|+ .
T Consensus 35 py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g--~iQ~~~~~~~~~~~~~~~~ 112 (505)
T PRK12445 35 AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQ 112 (505)
T ss_pred CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCc--cEEEEEECCccchhhHHHH
Confidence 788999999999999887753 11 24477899999999999999999999999996 5999998653 2344 3
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHHH
Q 011364 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARV 150 (487)
Q Consensus 75 ~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~ 150 (487)
++. |+.||+|+|+|++.+++++ ++||.+++++|||+|. .|+|.+.++ .+...++||||+| ++..+++|++
T Consensus 113 ~~~--l~~Gd~V~v~G~~~~t~~g--elel~~~~~~llsk~~--~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~ 186 (505)
T PRK12445 113 FKK--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKAL--RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVV 186 (505)
T ss_pred Hhc--CCCCCEEEEEEEEEecCCC--cEEEEEeEEEEEecCC--CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHH
Confidence 566 9999999999999998854 8999999999999997 566655544 3444489999999 5799999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
||+|++++|+||.++||+||+||+|+++.+++++.+| +|++ ++|+.++||++
T Consensus 187 Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF-~t~~---------------------------~~~~~~~yL~~ 238 (505)
T PRK12445 187 RSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPF-ITHH---------------------------NALDLDMYLRI 238 (505)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccce-eccc---------------------------ccCCcceeeec
Confidence 9999999999999999999999999987665566788 4443 36789999999
Q ss_pred chhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcccccccc
Q 011364 231 SGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309 (487)
Q Consensus 231 Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~ 309 (487)
|||||| +|+++|++||||||||||||++ +.||||||||||||++|+||+++|+++|+||+++++.+.+.+... +..
T Consensus 239 SpELylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~--~~~ 315 (505)
T PRK12445 239 APELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVT--YGE 315 (505)
T ss_pred CHHHHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhccccee--cCc
Confidence 999998 5889999999999999999999 899999999999999999999999999999999999987654321 110
Q ss_pred ccccchhhhhhhhhhcCCCcccCHHHHHHHHHH-------------------hcccccccccccc-ccchHHHhhhhhcc
Q 011364 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-------------------AKKKFEFLVKWGC-DLQSEHERYLTEEA 369 (487)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-------------------~~~~~~~~~~~~~-~l~~~~e~~l~e~~ 369 (487)
.. --+..||+++||.||++.+.. .+.+.. ..|+. .+-.+...+++++.
T Consensus 316 ~~----------i~~~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~vE~~ 383 (505)
T PRK12445 316 HV----------FDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVE--KSWGLGRIVTEIFDEVAEAH 383 (505)
T ss_pred ee----------ccCCCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHhh
Confidence 00 012357778888887776642 122211 12332 23344455566766
Q ss_pred ccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc------CCCccc-H-HHH
Q 011364 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS-Y-WWY 441 (487)
Q Consensus 370 ~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~------g~~~~~-~-~~y 441 (487)
+. +|+||+|||.+++|||++.++++++++|||||++|+ ||+||++|++|+++|+++++++ |.++.. + +||
T Consensus 384 l~-~P~Fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~y 461 (505)
T PRK12445 384 LI-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDY 461 (505)
T ss_pred cC-CCEEEECCCchhCcccccCCCCCCceEEEEEEeCCE-EEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHH
Confidence 65 899999999999999987667778999999999997 9999999999999999998743 655443 3 789
Q ss_pred HHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 442 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 442 l~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
|+|++||||||||||||||||+|++||.+|||||++||+.+.
T Consensus 462 l~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 462 VTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 503 (505)
T ss_pred HHHHHcCCCCCCeEEEhHHHHHHHHcCCCchheEecCCCCCC
Confidence 999999999999999999999999999999999999999864
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-94 Score=760.67 Aligned_cols=430 Identities=21% Similarity=0.324 Sum_probs=352.4
Q ss_pred CCCCccccceeeccccCCCCC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhH
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQV 75 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~----~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~ 75 (487)
|+.++|.++++++++...+.+ .....++.|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.+
T Consensus 24 ~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~ 101 (491)
T PRK00484 24 PYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSG--RIQLYVSKDDVGEEALEAF 101 (491)
T ss_pred CCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCc--cEEEEEECCcCCHHHHHHH
Confidence 688999999999999887643 1112247899999999999999999999999997 4999998764 236667
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHHHH
Q 011364 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVR 151 (487)
Q Consensus 76 ~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~R 151 (487)
+. |+.||+|.|+|++.+++++ ++||.+++++|||+|.. |+|.+.++ .+...++||||+| ++.++++|++|
T Consensus 102 ~~--l~~g~~v~v~G~v~~t~~g--e~el~~~~~~vls~~~~--plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~R 175 (491)
T PRK00484 102 KK--LDLGDIIGVEGTLFKTKTG--ELSVKATELTLLTKSLR--PLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKR 175 (491)
T ss_pred hc--CCCCCEEEEEEEEEEcCCC--cEEEEEeEEEEEeccCC--CCCcccccccchhhhccceeeehhcCHHHHHHHHHH
Confidence 77 9999999999999998764 89999999999999974 45444433 3333489999997 78999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
|+|++++|+||.++||+||+||+|+++++++++++|. +++ +||+.++||++|
T Consensus 176 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~-t~~---------------------------~~~~~~~yL~~S 227 (491)
T PRK00484 176 SKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFI-THH---------------------------NALDIDLYLRIA 227 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeccCCCccceeee-ecc---------------------------ccCCCceEeccC
Confidence 9999999999999999999999999887666678995 322 477899999999
Q ss_pred hhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccc
Q 011364 232 GQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 310 (487)
Q Consensus 232 pql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~ 310 (487)
|||||| ++++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+.+ .+.+.+.
T Consensus 228 pql~lk~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~--~i~~~~~ 304 (491)
T PRK00484 228 PELYLKRLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTT--KVTYQGT 304 (491)
T ss_pred HHHHHHHHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc--eEecCCE
Confidence 999995 7789999999999999999995 69999999999999999999999999999999999987643 2332221
Q ss_pred cccchhhhhhhhhhcCCCcccCHHHHHHHHHH-----------------hccccccccccccccchHHHhhhhhccccCc
Q 011364 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-----------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373 (487)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-----------------~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~ 373 (487)
. ..+..||+++||.||++.+.. .+.+......||..+...++.+ +++.+. +
T Consensus 305 ~----------~~~~~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-ve~~~~-~ 372 (491)
T PRK00484 305 E----------IDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEF-VEPKLI-Q 372 (491)
T ss_pred e----------ecCCCCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-hhhhcC-C
Confidence 0 013458889999998877532 1111111112333344445554 455555 7
Q ss_pred cEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc------CCCcc-cH-HHHHHHH
Q 011364 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRD-SY-WWYLDLR 445 (487)
Q Consensus 374 p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~------g~~~~-~~-~~yl~~~ 445 (487)
|+||+|||.+++|||++.++++++++|||||++|+ ||+||++|++++.+|++++++. |.++. .+ +|||+|+
T Consensus 373 P~Fi~dyP~~~~pf~k~~~~~~~~~~rFdL~i~G~-Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~ 451 (491)
T PRK00484 373 PTFITDYPVEISPLAKRHREDPGLTERFELFIGGR-EIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRAL 451 (491)
T ss_pred cEEEECCChHHhhhhccCCCCCCeEEEEEEEECCE-EEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHH
Confidence 99999999999999987777788999999999998 9999999999999999888642 43332 24 6899999
Q ss_pred hcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 446 HYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 446 ~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
+||+|||||||||||||+|++||.+|||||++||+....
T Consensus 452 ~~G~PP~gG~GiGiDRLvm~ltg~~~Irdvi~FP~~~~~ 490 (491)
T PRK00484 452 EYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFPLMRPE 490 (491)
T ss_pred HCCCCCCCeEEEeHHHHHHHHhCCCcHHhcccCCCCCCC
Confidence 999999999999999999999999999999999998753
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-93 Score=757.51 Aligned_cols=443 Identities=16% Similarity=0.243 Sum_probs=371.7
Q ss_pred CCCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCc-----cchH
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYD 73 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~-----~~~~ 73 (487)
|+.++|.++++++++.+.|.+ ++...+..|+|+|||+++|.+| |++|++|+|.+| .||||++.+. ..|+
T Consensus 103 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g--~iQv~~~~~~~~~~~~~~~ 180 (585)
T PTZ00417 103 PYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGA--KIQVLANFAFHDHTKSNFA 180 (585)
T ss_pred CCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCe--eEEEEEECCccCCCHHHHH
Confidence 788999999999999887753 2222345699999999999998 799999999886 5999998652 2354
Q ss_pred h-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccChhhhhhcccccCC-ChhhHHHHHHH
Q 011364 74 Q-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPR-TNTFGAVARVR 151 (487)
Q Consensus 74 ~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~~~r~~r~l~~R-~~~~~~~~~~R 151 (487)
. .+. |+.||+|+|+|.+.+++++ ++||.++++++|++|..++|..-...+.+...++||||+| ++..+++|++|
T Consensus 181 ~~~~~--l~~Gd~V~V~G~~~~t~~g--el~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~R 256 (585)
T PTZ00417 181 ECYDK--IRRGDIVGIVGFPGKSKKG--ELSIFPKETIILSPCLHMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITR 256 (585)
T ss_pred HHHhc--CCCCCEEEEEeEEcCCCCc--eEEEEEEEEEEEecCCCCCCcccCCCCcccccccchhhhhcCHHHHHHHHHH
Confidence 4 356 9999999999999988754 8999999999999998656653112233434479999998 77999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
|+|+++||+||.++||+||+||+|+++.+++++.+|. |+++ +++.++||++|
T Consensus 257 S~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~-T~~n---------------------------~~d~~lYLriS 308 (585)
T PTZ00417 257 TKIINYLRNFLNDRGFIEVETPTMNLVAGGANARPFI-THHN---------------------------DLDLDLYLRIA 308 (585)
T ss_pred HHHHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEE-eccc---------------------------CCCcceEEeec
Confidence 9999999999999999999999999987656667884 5443 45788999999
Q ss_pred hhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCc--------
Q 011364 232 GQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-------- 302 (487)
Q Consensus 232 pql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~-------- 302 (487)
||||| +|+++|++||||||||||||++ ++||||||||||||++|+||+|+|+++|+||++++..+.+...
T Consensus 309 pEL~lKrLlvgG~~rVfeIgp~FRnE~~-~~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~ 387 (585)
T PTZ00417 309 TELPLKMLIVGGIDKVYEIGKVFRNEGI-DNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGP 387 (585)
T ss_pred HHHHHHHHHHhCCCCEEEEcccccCCCC-CCCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeeccccc
Confidence 99998 5889999999999999999999 4799999999999999999999999999999999998875421
Q ss_pred ----cccccccccccchhhhhhhhhhcCCCc-----ccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCc
Q 011364 303 ----EDMDFFNTWIEKGIIDRLSTVAERDFV-----QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373 (487)
Q Consensus 303 ----~~l~~~~~~~~~~~~~~l~~~~~~~~~-----~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~ 373 (487)
.++++..+|.+.++.+.++++++.++. ..+++++++++++.|+++.....|+..++..++.++.+.+.+ +
T Consensus 388 ~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~-~ 466 (585)
T PTZ00417 388 EKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN-K 466 (585)
T ss_pred ccccccccCCCCceeccHHHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCC-C
Confidence 234555677777888899888887654 258999999999888766555567777888888887766553 6
Q ss_pred cEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHH------HcCCCcccH--HH-HHHH
Q 011364 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--WW-YLDL 444 (487)
Q Consensus 374 p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~------~~g~~~~~~--~~-yl~~ 444 (487)
|+||+|||.+++|||+...+++++++|||||++|+ ||+||+++++|+.+|+++++ +.| +.+.+ ++ ||+|
T Consensus 467 PtFI~dyP~~~sPLak~~~~dp~v~eRFELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~A 544 (585)
T PTZ00417 467 PFFIIEHPQIMSPLAKYHRSKPGLTERLEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCTS 544 (585)
T ss_pred cEEEECCChhhCchhhhcCCCCCeEEeEEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHHH
Confidence 99999999999999976666788999999999997 99999999999999887654 335 44443 33 9999
Q ss_pred HhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 445 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 445 ~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
++||||||||||||||||+|++||.+|||||++||++..
T Consensus 545 leyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 545 LEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred HHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 999999999999999999999999999999999999864
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-91 Score=746.58 Aligned_cols=442 Identities=16% Similarity=0.222 Sum_probs=350.6
Q ss_pred CCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc----chHhH-
Q 011364 4 KVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV- 75 (487)
Q Consensus 4 ~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~----~~~~~- 75 (487)
.+++|.++++++++.++|.+ +....++.|+|+|||+++|.+||++|++|||++| .||||++.+.. .++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G--~IQvv~~~~~~~~~~~~~~~~ 156 (659)
T PTZ00385 79 AYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGN--ELQVVGQVGEHFTREDLKKLK 156 (659)
T ss_pred ccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCc--eEEEEEECCccCCHHHHHHHH
Confidence 57899999999999988753 1122355799999999999999999999999997 59999987542 24444
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCC-CCCC-C--ccc---cChhhhhhcccccCC-ChhhHHH
Q 011364 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPI-Q--KKR---VSREFLRTKAHLRPR-TNTFGAV 147 (487)
Q Consensus 76 ~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~-~~p~-~--~~~---~~~~~~r~~r~l~~R-~~~~~~~ 147 (487)
+. |+.||+|.|+|++.++++ +++||++++++|||++.. ..|+ + .+. .+.+...++|||||| ++.++++
T Consensus 157 ~~--l~~gdiV~V~G~v~~t~~--GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~i 232 (659)
T PTZ00385 157 VS--LRVGDIIGADGVPCRMQR--GELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIET 232 (659)
T ss_pred hC--CCCCCEEEEEEEEEecCC--ceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHH
Confidence 45 999999999999999875 489999999999999642 2221 2 132 245555699999996 6789999
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (487)
|++||+|+++||+||.++||+||+||+|+++.+++++++|. |+++ +++.++|
T Consensus 233 fr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~-t~~n---------------------------~~~~~~y 284 (659)
T PTZ00385 233 IKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFV-THHN---------------------------ANAMDLF 284 (659)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceE-eecc---------------------------cCCCCEE
Confidence 99999999999999999999999999999999999999995 4433 4678899
Q ss_pred cccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcc---
Q 011364 228 LTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE--- 303 (487)
Q Consensus 228 L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~--- 303 (487)
|++||||||| |+++|++||||||||||||++ +.||||||||||||++|+||+++|+++|+||++++..+.+...-
T Consensus 285 L~~SPELylKrLivgG~erVyeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~ 363 (659)
T PTZ00385 285 LRVAPELHLKQCIVGGMERIYEIGKVFRNEDA-DRSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVVQIY 363 (659)
T ss_pred ecCChHHHHHHHhhcccCCEEEEeceecCCCC-CCCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeEEee
Confidence 9999999995 888999999999999999999 48999999999999999999999999999999999998764321
Q ss_pred ---------ccccccccccchhhhhhhhhhcCCCcc---c-CHHHH---HHHHHHhccccccccccccccchHHHhhhhh
Q 011364 304 ---------DMDFFNTWIEKGIIDRLSTVAERDFVQ---L-SYTDA---IELLIKAKKKFEFLVKWGCDLQSEHERYLTE 367 (487)
Q Consensus 304 ---------~l~~~~~~~~~~~~~~l~~~~~~~~~~---i-t~~ea---~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e 367 (487)
++++..+|.+.++.+.+.+++|.++.. + +.+++ ..++++.|++++....+|..++..++.++.+
T Consensus 364 ~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~ 443 (659)
T PTZ00385 364 PENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITD 443 (659)
T ss_pred ccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHH
Confidence 122223344444444444444443321 1 11111 1222333433332222344455556666555
Q ss_pred ccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHH-----HcCCCcccH---H
Q 011364 368 EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-----ELKLNRDSY---W 439 (487)
Q Consensus 368 ~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~-----~~g~~~~~~---~ 439 (487)
.+ . +|+||+|||.+++||+++..+++++++|||||++|+ ||+||+++++|+.+|+++++ ..+.|++.+ +
T Consensus 444 ~l-~-qPtFI~dyP~e~sPLak~~~~dp~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~De 520 (659)
T PTZ00385 444 RV-V-EPTFVMDHPLFMSPLAKEQVSRPGLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDE 520 (659)
T ss_pred hh-C-CcEEEeCCccccCcccccCCCCCCeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHH
Confidence 44 4 899999999999999876667788999999999997 99999999999999999993 345566655 8
Q ss_pred HHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 440 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 440 ~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
|||+|++||||||||||||||||+|++||.+|||||++||....
T Consensus 521 dfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReVilFP~mr~ 564 (659)
T PTZ00385 521 TFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQ 564 (659)
T ss_pred HHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhheecCccccc
Confidence 89999999999999999999999999999999999999998764
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-92 Score=720.05 Aligned_cols=441 Identities=21% Similarity=0.320 Sum_probs=382.1
Q ss_pred CCCCccccceeeccccCCCCC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHh-
Q 011364 3 SKVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ- 74 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~----~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~- 74 (487)
|+++.|.+++++.++...+.. ........|+|+|||+++|.+||.+|++|.|++| +||++++++. ..|+.
T Consensus 31 ~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~g--kiQ~yi~k~~~~~~~~~~~ 108 (502)
T COG1190 31 PYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSG--KIQLYVNKDEVGEEVFEAL 108 (502)
T ss_pred CCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCc--eEEEEEeccccchhhHHHH
Confidence 678999999999999987753 1122233599999999999999999999999996 5999999875 33554
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccChhh--hh-hcccccCCCh-hhHHHHHH
Q 011364 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF--LR-TKAHLRPRTN-TFGAVARV 150 (487)
Q Consensus 75 ~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~~--~r-~~r~l~~R~~-~~~~~~~~ 150 (487)
.+. ++.||+|+|+|.+.+|+++ +++|.|+++++|+||+ .|+|+|.+++.. .| +.||+|+-.+ ..+.+|..
T Consensus 109 ~~~--~dlGDiigv~G~~~~T~~G--elSv~v~~~~lLsKsL--~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~ 182 (502)
T COG1190 109 FKK--LDLGDIIGVEGPLFKTKTG--ELSVSVEELRLLSKSL--RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIK 182 (502)
T ss_pred Hhc--cccCCEEeeeeeeeecCCC--ceEEEEEEEeeecccC--CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345 9999999999999999866 8999999999999998 688889887633 22 7899999876 79999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
||+|+++||+||.++||+||+||+|++..+++++.|| +|+||. ++.++||++
T Consensus 183 Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF-~ThhNa---------------------------ld~dlyLRI 234 (502)
T COG1190 183 RSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPF-ITHHNA---------------------------LDMDLYLRI 234 (502)
T ss_pred HHHHHHHHHHHHHHCCCeEeccccccccCCCcccccc-eeeecc---------------------------cCCceEEee
Confidence 9999999999999999999999999999999999999 588774 467889999
Q ss_pred chhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccC-----ccc
Q 011364 231 SGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-----KED 304 (487)
Q Consensus 231 Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~-----~~~ 304 (487)
|||||| ||+++|++|||||+++||||++ +.||||||||||+|+||+||+|+|+++|+|++.+++.+.+.. ...
T Consensus 235 ApELyLKRliVGG~erVfEIgr~FRNEGi-d~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~ 313 (502)
T COG1190 235 APELYLKRLIVGGFERVFEIGRNFRNEGI-DTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQE 313 (502)
T ss_pred ccHHHHHHHHhcCchhheeeccccccCCC-ccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEe
Confidence 999998 8999999999999999999999 799999999999999999999999999999999999998743 356
Q ss_pred cccccccccchhhhhhhhhhcCC-CcccCHHHHHHHHHHhccccccccc--cccccchHHHhhhhhccccCccEEEEecC
Q 011364 305 MDFFNTWIEKGIIDRLSTVAERD-FVQLSYTDAIELLIKAKKKFEFLVK--WGCDLQSEHERYLTEEAFGGCPVIVSDYP 381 (487)
Q Consensus 305 l~~~~~~~~~~~~~~l~~~~~~~-~~~it~~ea~~~l~~~~~~~~~~~~--~~~~l~~~~e~~l~e~~~~~~p~fi~~~P 381 (487)
+++.++|.+..+.+.+++..+.. +...+.++|.+++++.+++...... +|.-++..+|....+. +. +|+||+|||
T Consensus 314 id~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~-li-qPTFv~d~P 391 (502)
T COG1190 314 IDFSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAK-LI-QPTFVTDHP 391 (502)
T ss_pred EecCCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhh-hc-CCceeecCc
Confidence 78888899999999999998874 5667888999999988876543322 4455677777765444 44 799999999
Q ss_pred CcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH------cCCCccc-H-HHHHHHHhcCCCCcc
Q 011364 382 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDS-Y-WWYLDLRHYGSVPHA 453 (487)
Q Consensus 382 ~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~------~g~~~~~-~-~~yl~~~~~G~pP~~ 453 (487)
.+++|++++++.+++.++|||||++|. |+|||+.+.+|+..|.++|.+ .|-+.+. + +.|++|++|||||+|
T Consensus 392 ~eiSPLak~~~~~p~~teRFElfi~g~-EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTg 470 (502)
T COG1190 392 VEISPLAKRHRSNPGLTERFELFIGGK-EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTG 470 (502)
T ss_pred cccCccccCCCCCcchhhhheeeeccE-EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCC
Confidence 999999988888889999999999996 999999999999999988864 3544332 3 569999999999999
Q ss_pred ceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 454 GFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 454 G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
|+|||||||+|+|||..|||||++||....
T Consensus 471 G~GiGIDRLvMllT~~~sIRdVilFP~mr~ 500 (502)
T COG1190 471 GLGIGIDRLVMLLTNSPSIRDVILFPAMRP 500 (502)
T ss_pred CccccHHHHHHHHcCCCchhheecccccCC
Confidence 999999999999999999999999997643
|
|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-89 Score=695.35 Aligned_cols=412 Identities=25% Similarity=0.410 Sum_probs=336.3
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCC-c-cchHhHhccCCCCCcEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-A-EGYDQVKSGLITTGASIW 87 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~-~-~~~~~~~~~~L~~gd~V~ 87 (487)
|+|+|.+|... ++|++|+++|||++.|++|+++||+|||.+|. +|||++++ . ..|+.+.. |+.|++|.
T Consensus 2 Rt~~cg~l~~~------~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~--lr~E~vi~ 71 (585)
T COG0173 2 RTHYCGELRES------HVGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFVIQ 71 (585)
T ss_pred CceeccccCHH------HCCCEEEEEeeeeeccccCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHh--cCceEEEE
Confidence 68999999875 89999999999999999999999999999986 99999984 3 34777888 99999999
Q ss_pred EEeeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCCccc--cChhhhh-hcccccCCChhhHHHHHHHHHHHHH
Q 011364 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR--VSREFLR-TKAHLRPRTNTFGAVARVRNALAYA 157 (487)
Q Consensus 88 V~G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~~~~--~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~ 157 (487)
|+|+|.+++. .++++||++++|+|||+|.+ +|++..+ ...+.+| +|||||||++.++.++++||+++.+
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~~-lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~ 150 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKT-LPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKA 150 (585)
T ss_pred EEEEEEecCccccCCCCCcceEEEEeeeEEEEecCCC-CCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999999865 35799999999999999975 5655332 3344444 9999999999999999999999999
Q ss_pred HHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH
Q 011364 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE 237 (487)
Q Consensus 158 iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ 237 (487)
+|+||.++||+||+||+|+.+++|||++...+++.++ ++||. |.||||+|||
T Consensus 151 iR~~ld~~gF~EiETPiLtkSTPEGARDfLVPSRv~~------------------------G~FYA----LPQSPQlfKQ 202 (585)
T COG0173 151 IRNFLDDQGFLEIETPILTKSTPEGARDFLVPSRVHP------------------------GKFYA----LPQSPQLFKQ 202 (585)
T ss_pred HHHHHhhcCCeEeecCccccCCCccccccccccccCC------------------------Cceee----cCCCHHHHHH
Confidence 9999999999999999999999999999876655543 46885 7799999998
Q ss_pred -HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchh
Q 011364 238 -TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 316 (487)
Q Consensus 238 -ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (487)
||++|++|||||++|||+|+.+.+|+ |||||||+||+|.+-+|+|+++|+|+..+++.+.+..
T Consensus 203 LLMvsGfdRYyQIarCFRDEDlRaDRQ-PEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i~--------------- 266 (585)
T COG0173 203 LLMVAGFDRYYQIARCFRDEDLRADRQ-PEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGIE--------------- 266 (585)
T ss_pred HHHHhcccceeeeeeeecccccccccC-CcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCCc---------------
Confidence 68999999999999999999999999 9999999999999999999999999999999876421
Q ss_pred hhhhhhhhcCCCcccCHHHHHHHH--------------------------------------------------------
Q 011364 317 IDRLSTVAERDFVQLSYTDAIELL-------------------------------------------------------- 340 (487)
Q Consensus 317 ~~~l~~~~~~~~~~it~~ea~~~l-------------------------------------------------------- 340 (487)
+..||+|+||+||+..+
T Consensus 267 -------l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~ 339 (585)
T COG0173 267 -------LKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDE 339 (585)
T ss_pred -------cCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHH
Confidence 22355555555554432
Q ss_pred -----HHhcccccccccccc-ccchHHHhh-----------------------------------------------hhh
Q 011364 341 -----IKAKKKFEFLVKWGC-DLQSEHERY-----------------------------------------------LTE 367 (487)
Q Consensus 341 -----~~~~~~~~~~~~~~~-~l~~~~e~~-----------------------------------------------l~e 367 (487)
+..|.+--..+.|.+ .+...+.++ |++
T Consensus 340 ~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~ 419 (585)
T COG0173 340 LTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLID 419 (585)
T ss_pred HHHHHHHcCCCceEEEEEecCCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCC
Confidence 111000000000000 011111010 011
Q ss_pred ccccCccEEEEecCCc------------CccccccccCCC-------C--ceEEEEEEecCeeeeechhHhhchHHHHHH
Q 011364 368 EAFGGCPVIVSDYPKE------------IKAFYMRQNDDG-------R--TVAAMDMLVPRIGELIGGSQREERLEYLEG 426 (487)
Q Consensus 368 ~~~~~~p~fi~~~P~~------------~~pf~~~~~~~~-------~--~~~~fdl~~~G~~El~~G~~r~~~~~~~~~ 426 (487)
.- ...++||+|||.. ++||+|+...+. . .+..||+++||+ ||+|||.|+|+.+.|++
T Consensus 420 ~~-~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~eiQ~~ 497 (585)
T COG0173 420 KD-QFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDPEIQEK 497 (585)
T ss_pred cc-cceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCHHHHHH
Confidence 10 1269999999993 789999865432 1 356899999998 99999999999999999
Q ss_pred HHHHcCCCcc----cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 427 RLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 427 ~~~~~g~~~~----~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
.|+..|++++ .++.+|+|++||+|||||+|+|+|||+|+|+|.+||||||+||++.+..
T Consensus 498 vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a~ 560 (585)
T COG0173 498 VFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQAA 560 (585)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCchhheeecCCCcccc
Confidence 9999999987 4788999999999999999999999999999999999999999987653
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-88 Score=722.07 Aligned_cols=427 Identities=23% Similarity=0.341 Sum_probs=332.8
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
++++|.++... ++|++|+|+|||+++|.+||++|++|||++| .+|||++.+...++.++. |+.||+|.|+
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~--L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLRTE------HLGQTVTLAGWVNRRRDLGGLIFIDLRDRSG--IVQVVCDPDADALKLAKG--LRNEDVVQVK 71 (583)
T ss_pred CceeHhhcchh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCc--cEEEEEeCCHHHHHHHhc--CCCCCEEEEE
Confidence 67889999764 7899999999999999999999999999997 499999876444666777 9999999999
Q ss_pred eeEeecC-------CCCceEEEEEeEEEEEccCCCCCCCCcc-ccChhhhh-hcccccCCChhhHHHHHHHHHHHHHHHH
Q 011364 90 GNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHK 160 (487)
Q Consensus 90 G~~~~~~-------~~~~~~el~~~~i~vls~~~~~~p~~~~-~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (487)
|+|.+++ ..++++||.+++++|||+|. .+|++.. ..+.+.+| ++||||+|++.++++|++||+|++++|+
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ 150 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRN 150 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999764 34578999999999999996 4676543 23444555 8999999999999999999999999999
Q ss_pred hhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc-ccccchhhhHH-H
Q 011364 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA-FLTVSGQLNAE-T 238 (487)
Q Consensus 161 ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~Spql~l~-l 238 (487)
||.++||+||+||+|+++++||+++ |.+. .. +++... +|+||||+||| +
T Consensus 151 ff~~~gFiEVeTP~L~~s~~eGar~-f~vp-~~---------------------------~~~~~~y~L~qSpQlykq~l 201 (583)
T TIGR00459 151 FLDQQGFLEIETPMLTKSTPEGARD-YLVP-SR---------------------------VHKGEFYALPQSPQLFKQLL 201 (583)
T ss_pred HHHHCCCEEEECCeeccCCCCCCcc-eeee-ee---------------------------cCCCceeecCCCHHHHHHHH
Confidence 9999999999999999999999876 4332 11 112223 49999999997 6
Q ss_pred HhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhh
Q 011364 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318 (487)
Q Consensus 239 l~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (487)
+++|++|||||+||||||++++.|| |||||||||++|+|++|+|+++|+||+++++.+.+. ++..+|.+.++.+
T Consensus 202 ~v~G~ervfqI~~~FR~E~~~t~r~-pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~~-----~~~~pf~r~ty~e 275 (583)
T TIGR00459 202 MVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGI-----DLKKPFPVMTYAE 275 (583)
T ss_pred HhcccCcEEEEcceeeCCCCCCCCC-cccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCCCceEEEHHH
Confidence 8899999999999999999988877 999999999999999999999999999999988652 1112233333333
Q ss_pred hhhhhhcC----------------------------------------------CCcccCHHHHHHHHHHhccc------
Q 011364 319 RLSTVAER----------------------------------------------DFVQLSYTDAIELLIKAKKK------ 346 (487)
Q Consensus 319 ~l~~~~~~----------------------------------------------~~~~it~~ea~~~l~~~~~~------ 346 (487)
+++++ |. ++.+-..+++.++.++.|.+
T Consensus 276 a~~~y-GsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 354 (583)
T TIGR00459 276 AMERY-GSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLK 354 (583)
T ss_pred HHHHH-CCCCCccccCcccccHHHhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEE
Confidence 32222 10 11112222333333333322
Q ss_pred cccccccc---cccch-------------------------------H------H-H-hhhhhccccCccEEEEecCCc-
Q 011364 347 FEFLVKWG---CDLQS-------------------------------E------H-E-RYLTEEAFGGCPVIVSDYPKE- 383 (487)
Q Consensus 347 ~~~~~~~~---~~l~~-------------------------------~------~-e-~~l~e~~~~~~p~fi~~~P~~- 383 (487)
+.....++ .-+.. . . + .-+++... -+|+||+|||..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~-~~~~wV~dfPlfe 433 (583)
T TIGR00459 355 VNEDGINSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDL-FSFLWVVDFPMFE 433 (583)
T ss_pred EcCCcCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCC-ceEEEEEeCCCcc
Confidence 11100000 00000 0 0 0 01222211 279999999997
Q ss_pred ----------CccccccccCCCC---------ceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCccc----HHH
Q 011364 384 ----------IKAFYMRQNDDGR---------TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWW 440 (487)
Q Consensus 384 ----------~~pf~~~~~~~~~---------~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~----~~~ 440 (487)
++||+++..+|.. .+++|||++||+ ||+|||.|+|+++.|+++|+..|++++. +++
T Consensus 434 ~~~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ 512 (583)
T TIGR00459 434 KDKEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGF 512 (583)
T ss_pred ccCCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999998766544 678999999998 9999999999999999999999997663 689
Q ss_pred HHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 441 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 441 yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
||+|++||+|||||+|||+|||+|+|||.+||||||+||++....
T Consensus 513 ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sIRDVIaFPKt~~g~ 557 (583)
T TIGR00459 513 LLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDVIAFPKTTAAA 557 (583)
T ss_pred HHHHHhcCCCCcCceeccHHHHHHHHcCCCchhheeecCCCCCCc
Confidence 999999999999999999999999999999999999999998754
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-87 Score=762.61 Aligned_cols=427 Identities=19% Similarity=0.253 Sum_probs=350.1
Q ss_pred CCCCCccccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhH-hc
Q 011364 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KS 77 (487)
Q Consensus 2 ~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~-~~ 77 (487)
-|+.++|.++++++++.+. ..|++|+|+|||+++|++||++|++|+|++| .||||++++.. .++.. +.
T Consensus 630 ~pyp~~~~~~~~~~~~~~~------~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~~ 701 (1094)
T PRK02983 630 DPYPVGVPPTHTVAEALDA------PTGEEVSVSGRVLRIRDYGGVLFADLRDWSG--ELQVLLDASRLEQGSLADFRAA 701 (1094)
T ss_pred CCCCCCCcCccCHHHHHHh------cCCCEEEEEEEEEEEeeCCCeEEEEEEeCCe--eEEEEEECCccchhhHHHHHhc
Confidence 4788999999999999864 6788999999999999999999999999996 59999987642 24433 34
Q ss_pred cCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHHHHHH
Q 011364 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNA 153 (487)
Q Consensus 78 ~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~Rs~ 153 (487)
|+.||+|.|+|++.+++++ ++||.+++++|+++|. .|+|++.++ .+...++||||+| ++.++++|++||+
T Consensus 702 --l~~gd~V~v~G~v~~t~~g--e~ei~~~~i~ll~k~~--~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~ 775 (1094)
T PRK02983 702 --VDLGDLVEVTGTMGTSRNG--TLSLLVTSWRLAGKCL--RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSA 775 (1094)
T ss_pred --CCCCCEEEEEEEEEEcCCC--CEEEEEeEEEEEeccC--cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHH
Confidence 9999999999999998865 7999999999999997 566665543 3333389999997 5789999999999
Q ss_pred HHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchh
Q 011364 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (487)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spq 233 (487)
|++++|+||.++||+||+||+|+++.|++++++|. |++ ++|+.++||+||||
T Consensus 776 i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~-t~~---------------------------~~~~~~~yLriSPE 827 (1094)
T PRK02983 776 VVRAVRETLVARGFLEVETPILQQVHGGANARPFV-THI---------------------------NAYDMDLYLRIAPE 827 (1094)
T ss_pred HHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeE-eee---------------------------cCCCccchhhcChH
Confidence 99999999999999999999999999988889996 333 47789999999999
Q ss_pred hhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccc
Q 011364 234 LNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWI 312 (487)
Q Consensus 234 l~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~ 312 (487)
||| +|+++|++||||||||||||+++ .||||||||||+|++|.||+|+|+++|+||+++++.+.+... +.+.+.
T Consensus 828 LylKrLivgG~erVFEIg~~FRnE~~~-~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~--~~~~~~-- 902 (1094)
T PRK02983 828 LYLKRLCVGGVERVFELGRNFRNEGVD-ATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPV--VMRPDG-- 902 (1094)
T ss_pred HHHHHHHhcccCceEEEcceecCCCCC-CCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcE--EeeCCc--
Confidence 998 57889999999999999999995 799999999999999999999999999999999999875432 111000
Q ss_pred cchhhhhhhhhhcCCCcccCHHHHHHHH------------------HHhcccccccccccc-ccchHHHhhhhhccccCc
Q 011364 313 EKGIIDRLSTVAERDFVQLSYTDAIELL------------------IKAKKKFEFLVKWGC-DLQSEHERYLTEEAFGGC 373 (487)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~it~~ea~~~l------------------~~~~~~~~~~~~~~~-~l~~~~e~~l~e~~~~~~ 373 (487)
. ....+-.+..||+++||.||++.. ++.+++.. ..|+. ++..+.+..++|+.+. +
T Consensus 903 --~-~~~~~i~~~~pf~rit~~eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~--~~~~~~~l~~~l~~~~ve~~~~-~ 976 (1094)
T PRK02983 903 --D-GVLEPVDISGPWPVVTVHDAVSEALGEEIDPDTPLAELRKLCDAAGIPYR--TDWDAGAVVLELYEHLVEDRTT-F 976 (1094)
T ss_pred --c-ccccccccCCCceEEEHHHHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCC--CCCCHhHHHHHHHHHHHHhhcC-C
Confidence 0 000001134578888888887632 22232221 12321 2334444455666665 8
Q ss_pred cEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-----cCCCcccH---HHHHHHH
Q 011364 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-----LKLNRDSY---WWYLDLR 445 (487)
Q Consensus 374 p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-----~g~~~~~~---~~yl~~~ 445 (487)
|+||+|||.+++|||++.++|+++++|||||++|+ ||+||+++++|+.+|++++++ .+.|++.+ +|||+|+
T Consensus 977 P~Fv~dyP~~~spla~~~~~~p~~~erFdL~i~G~-Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al 1055 (1094)
T PRK02983 977 PTFYTDFPTSVSPLTRPHRSDPGLAERWDLVAWGV-ELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQAL 1055 (1094)
T ss_pred CEEEECCCcccccccccCCCCCCeeEEEEEEECCE-EEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHH
Confidence 99999999999999988777888999999999997 999999999999999777654 45677765 6899999
Q ss_pred hcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 446 HYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 446 ~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
+||||||||||||||||+|++||. |||||++||+...
T Consensus 1056 ~yGmPP~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~ 1092 (1094)
T PRK02983 1056 EYAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFPLVKP 1092 (1094)
T ss_pred HcCCCCCCeEEeeHHHHHHHHhCC-ChheEecCCcCCC
Confidence 999999999999999999999996 9999999999764
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-86 Score=702.77 Aligned_cols=436 Identities=22% Similarity=0.326 Sum_probs=325.1
Q ss_pred ccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc--cchHhHhccCCCCCcEE
Q 011364 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASI 86 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~--~~~~~~~~~~L~~gd~V 86 (487)
.++|+|.+|... ++|++|+|+|||+++|++|+++|++|||++|. +|||++.+. ..++.++. |+.||+|
T Consensus 58 ~rt~~cg~l~~~------~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~--L~~esvV 127 (652)
T PLN02903 58 SRSHLCGALSVN------DVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANR--LRNEYVV 127 (652)
T ss_pred cCCCchhhcchh------hCCCEEEEEEEEEEEecCCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhc--CCCCCEE
Confidence 478999999874 88999999999999999999999999999975 999998653 23555677 9999999
Q ss_pred EEEeeEeecC-------CCCceEEEEEeEEEEEccCCCCCCCCcc-------ccChhhhhhcccccCCChhhHHHHHHHH
Q 011364 87 WIQGNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRN 152 (487)
Q Consensus 87 ~V~G~~~~~~-------~~~~~~el~~~~i~vls~~~~~~p~~~~-------~~~~~~~r~~r~l~~R~~~~~~~~~~Rs 152 (487)
.|+|+|.+++ ..++++||.+++++|||+|...+|++.. ..+.+..+++||||+|++.++++|++||
T Consensus 128 ~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs 207 (652)
T PLN02903 128 AVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRH 207 (652)
T ss_pred EEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHH
Confidence 9999999763 1246899999999999999655665432 2456666799999999999999999999
Q ss_pred HHHHHHHHhhhc-CCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 153 ALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 153 ~i~~~iR~ff~~-~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
++++++|+||.+ +||+||+||+|+++++||+++.|.++... .+..+||+||
T Consensus 208 ~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~----------------------------~g~~y~L~qS 259 (652)
T PLN02903 208 RVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQ----------------------------PGTFYALPQS 259 (652)
T ss_pred HHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecC----------------------------CCcccccCCC
Confidence 999999999997 99999999999999999998876542211 1334479999
Q ss_pred hhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccC---------
Q 011364 232 GQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC--------- 301 (487)
Q Consensus 232 pql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~--------- 301 (487)
||+||| +|++|++|||||+||||||+++++|| |||||||||++|+|++|+|+++|+||+++++.+.+..
T Consensus 260 PQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rit 338 (652)
T PLN02903 260 PQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLT 338 (652)
T ss_pred HHHHHHHHHhccCCcEEEEehhhccCCCCCCcc-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEE
Confidence 999997 67899999999999999999988888 9999999999999999999999999999998775421
Q ss_pred -----------ccccccccccccc-------hh---hhhhh-----hhh---c-CCCcccCHH---HHHHHHHHhc---c
Q 011364 302 -----------KEDMDFFNTWIEK-------GI---IDRLS-----TVA---E-RDFVQLSYT---DAIELLIKAK---K 345 (487)
Q Consensus 302 -----------~~~l~~~~~~~~~-------~~---~~~l~-----~~~---~-~~~~~it~~---ea~~~l~~~~---~ 345 (487)
+.|+.+--...+. ++ ...+. +.+ + ..+.+-... +.+....+.| .
T Consensus 339 y~eA~~~ygsDKPDlRf~~~l~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl 418 (652)
T PLN02903 339 YAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGL 418 (652)
T ss_pred HHHHHHHHcCCCCcccCCceeeEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCce
Confidence 1111110000000 00 00000 000 0 000000000 0010011111 0
Q ss_pred ---ccccc--c------------------------cccccc----------chHH---Hhh------hhhccccCccEEE
Q 011364 346 ---KFEFL--V------------------------KWGCDL----------QSEH---ERY------LTEEAFGGCPVIV 377 (487)
Q Consensus 346 ---~~~~~--~------------------------~~~~~l----------~~~~---e~~------l~e~~~~~~p~fi 377 (487)
.+... . +.|+.+ .... -.. |.++- ...++||
T Consensus 419 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~-~~~flWV 497 (652)
T PLN02903 419 AFLKVLDDGELEGIKALVESLSPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPS-RHSILWV 497 (652)
T ss_pred EEEEEcCCCCccCccchhhcCCHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCC-CceEEEE
Confidence 00000 0 000000 0000 000 11110 1269999
Q ss_pred EecCCc------------CccccccccCCC-----CceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcc----
Q 011364 378 SDYPKE------------IKAFYMRQNDDG-----RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD---- 436 (487)
Q Consensus 378 ~~~P~~------------~~pf~~~~~~~~-----~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~---- 436 (487)
+|||.. ++||+++..+|- -.+..|||++||+ ||+|||+|+|+++.|++.++..|++++
T Consensus 498 ~dFPlFe~~ee~~~~~a~HHPFTap~~~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~ 576 (652)
T PLN02903 498 TDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEAIGLSPEEAES 576 (652)
T ss_pred EeCCCCCccCCCCceEecCCCCCCCCCcchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHHcCCCHHHHHH
Confidence 999994 789999865432 2456899999998 999999999999999999999999876
Q ss_pred cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 437 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 437 ~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
.++|||+|++||+|||||+|+|+|||+|+|+|.+||||||+||++....
T Consensus 577 ~F~~~l~a~~yG~PphgG~alGldRlvmll~~~~~IrdviaFPKt~~g~ 625 (652)
T PLN02903 577 KFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGAKSIRDVIAFPKTTTAQ 625 (652)
T ss_pred HHHHHHHHHhcCCCCCCceeecHHHHHHHHcCCCchHheEecCCCCCcc
Confidence 4799999999999999999999999999999999999999999997653
|
|
| >KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-88 Score=672.34 Aligned_cols=442 Identities=19% Similarity=0.267 Sum_probs=374.0
Q ss_pred CCCCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCc----cchH
Q 011364 2 GSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYD 73 (487)
Q Consensus 2 ~~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~----~~~~ 73 (487)
-|++|||..++++.|+.+.|.. ++...+..|+|+|||+++|.+| |++|++|++++ .+||||++.+. .+|.
T Consensus 74 ~Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g--~klQvm~~~~~~~~~~~F~ 151 (560)
T KOG1885|consen 74 NPYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDG--VKLQVMANAKKITSEEDFE 151 (560)
T ss_pred CCCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCC--eEEEEEEehhhcCCHHHHH
Confidence 4789999999999999988753 5556677899999999999997 89999999886 46999999764 3576
Q ss_pred hHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccChh---hhhhcccccCCCh-hhHHHHH
Q 011364 74 QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE---FLRTKAHLRPRTN-TFGAVAR 149 (487)
Q Consensus 74 ~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~---~~r~~r~l~~R~~-~~~~~~~ 149 (487)
+..+ +|++||+|+|+|.+.+|+.+ +++|.+.++.+||+|+. |+|.+..++. ..=+.||+|+-.+ ..+..|+
T Consensus 152 ~~~~-~lkrGDiig~~G~pgrt~~g--ELSi~~~~~~lLspcLh--~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~ 226 (560)
T KOG1885|consen 152 QLHK-FLKRGDIIGVSGYPGRTKSG--ELSIIPNEIILLSPCLH--MLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFR 226 (560)
T ss_pred HHHh-hhhccCEEeeecCCCcCCCc--eEEEeecchheecchhc--cCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHH
Confidence 6432 39999999999999998876 89999999999999995 5554433332 2226899998865 7899999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc
Q 011364 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (487)
+||+|++.||.||+++||+||+||+|...++++.+.|| ||+||. ++.++||+
T Consensus 227 ~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPF-IT~hnd---------------------------ldm~LylR 278 (560)
T KOG1885|consen 227 IRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPF-ITHHND---------------------------LDMDLYLR 278 (560)
T ss_pred HHHHHHHHHHHHhhhcCceEecchhhccccCccccCce-eecccc---------------------------cCcceeee
Confidence 99999999999999999999999999999999999999 687763 36788999
Q ss_pred cchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCc------
Q 011364 230 VSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK------ 302 (487)
Q Consensus 230 ~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~------ 302 (487)
+|||||+ +|+++|++||||||+.||||++ +.+||||||.||+|+||+||+|+|+++|+|++.+++.+.++.+
T Consensus 279 iAPEL~lK~LvVGGldrVYEIGr~FRNEGI-DlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~ 357 (560)
T KOG1885|consen 279 IAPELYLKMLVVGGLDRVYEIGRQFRNEGI-DLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPN 357 (560)
T ss_pred echHHHHHHHHhccHHHHHHHHHHhhhcCc-ccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCC
Confidence 9999998 7999999999999999999999 6899999999999999999999999999999999999987642
Q ss_pred ------cccccccccccchhhhhhhhhhcCCCc---ccCHHHHHHHHHHh----ccccccccccccccchHHHhhhhhcc
Q 011364 303 ------EDMDFFNTWIEKGIIDRLSTVAERDFV---QLSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEA 369 (487)
Q Consensus 303 ------~~l~~~~~~~~~~~~~~l~~~~~~~~~---~it~~ea~~~l~~~----~~~~~~~~~~~~~l~~~~e~~l~e~~ 369 (487)
-++++..+|.+.+|++.|++.++.+|+ .+...|+-++|... +++++.+-..+.-|+...+.+|...
T Consensus 358 ~~~~~~~eldf~~pfrri~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~- 436 (560)
T KOG1885|consen 358 GPEEPELELDFTRPFRRIEMIEELEKELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPT- 436 (560)
T ss_pred CCCCCceeeeccCCeeeeeHHHHHHHHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccc-
Confidence 346777889899999999999999887 46667777777654 3333332222334566666666554
Q ss_pred ccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc------CCCcccH--HHH
Q 011364 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDSY--WWY 441 (487)
Q Consensus 370 ~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~------g~~~~~~--~~y 441 (487)
+. +|+||.|+|..++|+++.+....+.++|||||+.|- ||||++.+++++-.|+++|.++ |.|.... +.|
T Consensus 437 cv-nPTFi~~hP~imSPLAK~hrs~~glteRFElFi~~k-EicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~F 514 (560)
T KOG1885|consen 437 CV-NPTFIIDHPQIMSPLAKYHRSKAGLTERFELFIAGK-EICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDF 514 (560)
T ss_pred cC-CCeeEcCCchhcCccccccccccchhhHHHHhhhhH-HHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHH
Confidence 44 799999999999999988777788999999999995 9999999999999988888653 4443322 679
Q ss_pred HHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 442 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 442 l~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
+.|++||+||+||||+|||||+|+||+..|||||++||-..
T Consensus 515 c~ALEYGlPPtgGwGmGIDRL~MllTds~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 515 CTALEYGLPPTGGWGMGIDRLVMLLTDSNNIREVLLFPAMK 555 (560)
T ss_pred HHHHHcCCCCCCccccchhhhhhhhcCCcchhheeeccccC
Confidence 99999999999999999999999999999999999999653
|
|
| >KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-86 Score=646.15 Aligned_cols=426 Identities=26% Similarity=0.435 Sum_probs=370.7
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---c---hHhHhccCCCCC
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---G---YDQVKSGLITTG 83 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~---~~~~~~~~L~~g 83 (487)
+.+.++||.. +..++.|.|+|||++.|..||++|+.||++.+ ++||++..+.. . .+.... |+.|
T Consensus 69 ~~~~v~dl~~------~~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~--is~E 138 (533)
T KOG0556|consen 69 ELTDVSDLDE------SNDGSEVLVRGRVHTSRLKGKLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGS--ISKE 138 (533)
T ss_pred ceeehhhhhh------hcCCceEEEEEEEeeccccceEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhh--cCcc
Confidence 3345666655 36789999999999999999999999999985 59999976543 1 122445 9999
Q ss_pred cEEEEEeeEeecCC-----CCceEEEEEeEEEEEccCCCCCCCCccccC--------------------hhhhhhccccc
Q 011364 84 ASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRVS--------------------REFLRTKAHLR 138 (487)
Q Consensus 84 d~V~V~G~~~~~~~-----~~~~~el~~~~i~vls~~~~~~p~~~~~~~--------------------~~~~r~~r~l~ 138 (487)
|+|.|.|+|++.+. ..+.+||++..|.|||.+++.+|++.++.+ .++..+||.||
T Consensus 139 SiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlD 218 (533)
T KOG0556|consen 139 SIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLD 218 (533)
T ss_pred eEEEEEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeee
Confidence 99999999998753 357899999999999999988998754321 12334899999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 139 PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 139 ~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
||++.++++||+.+.+..++|+||..+||+||+||.|.++++||++.+|.|
T Consensus 219 LRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v----------------------------- 269 (533)
T KOG0556|consen 219 LRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV----------------------------- 269 (533)
T ss_pred cccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE-----------------------------
Confidence 999999999999999999999999999999999999999999999999987
Q ss_pred ccccCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHHHHHH
Q 011364 219 QDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRY 296 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~ 296 (487)
+||+.++||+|||||||| +++++|+|||+||||||+|+++|.||+.||+-||.||+|. .|+|+|+.+.+++.++++.
T Consensus 270 -~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~ 348 (533)
T KOG0556|consen 270 -SYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKG 348 (533)
T ss_pred -EeccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999997 5778899999999999999999999999999999999998 5999999999999999999
Q ss_pred hhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhh----hccccC
Q 011364 297 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGG 372 (487)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~----e~~~~~ 372 (487)
+.+.++.++...++.++.+-.. +-.|-.+++|.|++++|++.|++.+ .-+||+++-|+.|. +++..
T Consensus 349 l~ery~~Eie~Vr~qyp~e~fk-----f~~~~lrl~~~e~v~mLreaGvE~g----~~dDlsTe~Ek~LG~lV~eky~t- 418 (533)
T KOG0556|consen 349 LRERYAKEIETVRKQYPFEPFK-----FLEPPLRLTFKEGVAMLREAGVEMG----DEDDLSTESEKKLGQLVREKYDT- 418 (533)
T ss_pred HHHHHHHHHHHHhhcCCCcccc-----cCCCceEeehHHHHHHHHHcCcccC----CccccCChhHHHHHHHHHHHhCC-
Confidence 9999988887666544321111 1134568999999999999998643 23589999998773 44544
Q ss_pred ccEEEEecCCcCccccccccCC-CCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCC
Q 011364 373 CPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVP 451 (487)
Q Consensus 373 ~p~fi~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP 451 (487)
.+.++.+||.+.+|||.+.+++ +.++++||++++| .||.+|.||+|+++.+.++++.+|+|+..+..|+++++||+||
T Consensus 419 dfyildkyP~avRPFYTmpd~~~p~ySnSyD~fmRG-eEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFryG~PP 497 (533)
T KOG0556|consen 419 DFYILDKYPLAVRPFYTMPDPENPRYSNSYDFFMRG-EEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFRYGAPP 497 (533)
T ss_pred cEEEEccCccccccccccCCCCCCCcccchhheech-hhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhccCCCC
Confidence 6888899999999999887764 4589999999999 5999999999999999999999999999999999999999999
Q ss_pred ccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 452 HAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 452 ~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|||+|||+||++|++||+.|||-..+|||+|+|+.
T Consensus 498 HaGgGIGLERvvmlyl~L~nIR~~SlFPRDPkRL~ 532 (533)
T KOG0556|consen 498 HAGGGIGLERVVMLYLGLNNIRKTSLFPRDPKRLT 532 (533)
T ss_pred CCCCcccHHHHHHHHhcCCcchhhccCCCCccccC
Confidence 99999999999999999999999999999999974
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-84 Score=692.97 Aligned_cols=433 Identities=25% Similarity=0.368 Sum_probs=327.9
Q ss_pred ccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEE
Q 011364 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V 88 (487)
.+++++.++... ++|++|+|+|||+++|.+|+++|++|||++|. +|||++.....|+.++. |+.||+|.|
T Consensus 3 ~r~~~~~~l~~~------~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~--l~~es~V~V 72 (588)
T PRK00476 3 MRTHYCGELRES------HVGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQV 72 (588)
T ss_pred ccceeHHHhhHH------hCCCEEEEEEEEEEEEeCCCeEEEEEEeCCce--EEEEEeCCHHHHHHHhC--CCCCCEEEE
Confidence 378899999764 78999999999999999999999999999975 99999863334666777 999999999
Q ss_pred EeeEeecCCC-------CceEEEEEeEEEEEccCCCCCCCCcc--ccChhhhh-hcccccCCChhhHHHHHHHHHHHHHH
Q 011364 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSDPSYPIQKK--RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYAT 158 (487)
Q Consensus 89 ~G~~~~~~~~-------~~~~el~~~~i~vls~~~~~~p~~~~--~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (487)
+|+|.+++.+ ++++||.+++++|||+|. ++|++.. ....+.+| ++||||+|++.++++|++||++++++
T Consensus 73 ~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~i 151 (588)
T PRK00476 73 TGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAI 151 (588)
T ss_pred EEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHH
Confidence 9999987632 568999999999999998 6776532 22334455 89999999999999999999999999
Q ss_pred HHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH-
Q 011364 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE- 237 (487)
Q Consensus 159 R~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~- 237 (487)
|+||.++||+||+||+|+++++||+++ |.+.. . .+.+..+||+||||+|||
T Consensus 152 R~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~-~--------------------------~~~~~~~~L~qSpql~kq~ 203 (588)
T PRK00476 152 RNFLDDNGFLEIETPILTKSTPEGARD-YLVPS-R--------------------------VHPGKFYALPQSPQLFKQL 203 (588)
T ss_pred HHHHHHCCCEEEECCeeecCCCCCCcc-ceecc-c--------------------------ccCCceeecCCCHHHHHHH
Confidence 999999999999999999999999877 65421 1 122444579999999997
Q ss_pred HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccC----------------
Q 011364 238 TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC---------------- 301 (487)
Q Consensus 238 ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~---------------- 301 (487)
|+++|++|||||+||||||+++++||+ ||||||||++|+|++|+|+++|+||+++++.+.+..
T Consensus 204 l~~~g~~rvfqi~~~FR~E~~~~~r~~-EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~ 282 (588)
T PRK00476 204 LMVAGFDRYYQIARCFRDEDLRADRQP-EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRR 282 (588)
T ss_pred HHhcccCceEEEeceeecCCCCCCcCc-ccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHH
Confidence 678999999999999999999888886 999999999999999999999999999999876421
Q ss_pred ----ccccccccccccchhhhhhh--------hhh-------cCCCc-------ccCHHHHHHHHHHhccc------ccc
Q 011364 302 ----KEDMDFFNTWIEKGIIDRLS--------TVA-------ERDFV-------QLSYTDAIELLIKAKKK------FEF 349 (487)
Q Consensus 302 ----~~~l~~~~~~~~~~~~~~l~--------~~~-------~~~~~-------~it~~ea~~~l~~~~~~------~~~ 349 (487)
+.|+.+--... ++.+.+. ..+ +..++ +-..++..++.+..+.+ ...
T Consensus 283 yg~dkPDlR~~~eI~--DVT~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~ 360 (588)
T PRK00476 283 YGSDKPDLRFGLELV--DVTDLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNE 360 (588)
T ss_pred HCCCCCcccCCceeh--hHHHHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcC
Confidence 01111100000 0000000 000 00011 11122333333322210 000
Q ss_pred -c----------------------ccccccc---chH---HH-------hh------hhhccccCccEEEEecCCc----
Q 011364 350 -L----------------------VKWGCDL---QSE---HE-------RY------LTEEAFGGCPVIVSDYPKE---- 383 (487)
Q Consensus 350 -~----------------------~~~~~~l---~~~---~e-------~~------l~e~~~~~~p~fi~~~P~~---- 383 (487)
. .+-|+.+ ... .. .. +.+. ...+++||+|||..
T Consensus 361 ~~l~~~~akflsee~~~~L~e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~-~~~~f~Wv~dfPlf~~~~ 439 (588)
T PRK00476 361 DGLKGPIAKFLSEEELAALLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDE-DKFAFLWVVDFPMFEYDE 439 (588)
T ss_pred CCCcCchhhcCCHHHHHHHHHHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCC-CCceEEEEEeCCCCCccC
Confidence 0 0001000 000 00 00 1111 11269999999994
Q ss_pred --------CccccccccCC--------C--CceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcc----cHHHH
Q 011364 384 --------IKAFYMRQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWY 441 (487)
Q Consensus 384 --------~~pf~~~~~~~--------~--~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~----~~~~y 441 (487)
++||+++..+| + -.+.+|||++||+ ||+|||+|+|+++.|++.++..|++++ .++||
T Consensus 440 ~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~ 518 (588)
T PRK00476 440 EEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFL 518 (588)
T ss_pred CCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 78999986543 2 2468999999998 999999999999999999999999886 57999
Q ss_pred HHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 442 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 442 l~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
|+|++||+|||||||+|+|||+|+|||.+||||||+||++....
T Consensus 519 ~~a~~~g~pph~g~~~G~dr~~~~~~~~~~irdvi~fp~~~~g~ 562 (588)
T PRK00476 519 LDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKTQSAQ 562 (588)
T ss_pred HHHHhcCCCCCcceeccHHHHHHHHcCCccHHheeeccCCCCcc
Confidence 99999999999999999999999999999999999999997653
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-82 Score=680.70 Aligned_cols=434 Identities=21% Similarity=0.308 Sum_probs=318.4
Q ss_pred ccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcE
Q 011364 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~ 85 (487)
.|+|+|.+|... +.|+.|+|+|||+++|++|+++|++|||++|. +|||++++. ..|+.++. |+.||+
T Consensus 4 ~r~~~cg~l~~~------~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~--L~~Esv 73 (706)
T PRK12820 4 NDRSFCGHLSLD------DTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS--LRAEFC 73 (706)
T ss_pred ccccccccCChh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999875 78999999999999999999999999999975 999998653 23556677 999999
Q ss_pred EEEEeeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCC--ccc-----------cChhhhh-hcccccCCChhh
Q 011364 86 IWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQ--KKR-----------VSREFLR-TKAHLRPRTNTF 144 (487)
Q Consensus 86 V~V~G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~--~~~-----------~~~~~~r-~~r~l~~R~~~~ 144 (487)
|.|+|+|.+++. .++++||.+++++||++|. .+|++ ++. ...+.+| ++||||+|++.+
T Consensus 74 V~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~ 152 (706)
T PRK12820 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAM 152 (706)
T ss_pred EEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecCCHHH
Confidence 999999998531 2368999999999999996 34554 331 1234455 899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
+++|++||++++++|+||.++||+||+||+|+++++||+++.+.... ++..
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~~-----------------------------~~~~ 203 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSR-----------------------------IHPK 203 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEeee-----------------------------cCCC
Confidence 99999999999999999999999999999999999999888653321 1222
Q ss_pred cc-ccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhc---
Q 011364 225 PA-FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD--- 299 (487)
Q Consensus 225 ~~-~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~--- 299 (487)
.. +|+||||+||| |+++|++|||||+||||||++++.|| |||||||||++|+|++|+|+++|+||+++++....
T Consensus 204 ~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~~~~~~~~ 282 (706)
T PRK12820 204 EFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFAIGGIALP 282 (706)
T ss_pred cceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 23 49999999997 57899999999999999999987776 99999999999999999999999999999862210
Q ss_pred cC----------------ccccccccccccc-hhh-----hhhhhhh-------cCCCc----ccCH---HHHH--HHHH
Q 011364 300 NC----------------KEDMDFFNTWIEK-GII-----DRLSTVA-------ERDFV----QLSY---TDAI--ELLI 341 (487)
Q Consensus 300 ~~----------------~~~l~~~~~~~~~-~~~-----~~l~~~~-------~~~~~----~it~---~ea~--~~l~ 341 (487)
.+ +.|+.+--...+. ++. ..++..+ ...++ .++- ++++ +..+
T Consensus 283 ~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~ 362 (706)
T PRK12820 283 RPFPRMPYAEAMDTTGSDRPDLRFDLKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAP 362 (706)
T ss_pred CCceEEEHHHHHHHhCCCCCccccCcEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHH
Confidence 00 1111110000000 000 0000000 00001 0111 1101 1111
Q ss_pred Hhccc------ccc-c----------------------ccccccc------c-h----HH-H--hh------hhhccccC
Q 011364 342 KAKKK------FEF-L----------------------VKWGCDL------Q-S----EH-E--RY------LTEEAFGG 372 (487)
Q Consensus 342 ~~~~~------~~~-~----------------------~~~~~~l------~-~----~~-e--~~------l~e~~~~~ 372 (487)
..|.+ ... . .+.|+.+ . . .. . .. |.+.- ..
T Consensus 363 ~~g~~gl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~-~~ 441 (706)
T PRK12820 363 SFGAKGMTWMRAEAGGLDSNIVQFFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEG-VF 441 (706)
T ss_pred HcCCCceEEEEECCCCcCCchhccCCHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCC-Cc
Confidence 11100 000 0 0001000 0 0 00 0 00 11110 12
Q ss_pred ccEEEEecCC-----------cCccccccccCC--------C--CceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc
Q 011364 373 CPVIVSDYPK-----------EIKAFYMRQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431 (487)
Q Consensus 373 ~p~fi~~~P~-----------~~~pf~~~~~~~--------~--~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~ 431 (487)
.++||+|||. .++||+++..+| + -.+..|||++||+ ||+|||+|+|+++.|++.|+..
T Consensus 442 ~flWV~dFPlfe~~~e~~~~a~HHPFT~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~~~f~~l 520 (706)
T PRK12820 442 HPLWITDFPLFEATDDGGVTSSHHPFTAPDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQLRIFAAL 520 (706)
T ss_pred eEEEEEeCCcccCCCCCCeeeeeCCCCCcCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHHHHHHHc
Confidence 6899999999 479999985432 1 1357899999997 9999999999999999999999
Q ss_pred CCCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 432 KLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 432 g~~~~~----~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
|++++. +++||+|++||+|||||+|+|+|||+|+|||.+||||||+||++....
T Consensus 521 g~~~~~~~~~Fgf~l~a~~~G~pphgG~a~G~dRlvm~l~~~~sirdviaFPK~~~g~ 578 (706)
T PRK12820 521 GLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSMILQTPSIREVIAFPKNRSAA 578 (706)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCceeccHHHHHHHHcCCccHHHhcccCCCCCCC
Confidence 998764 679999999999999999999999999999999999999999987653
|
|
| >KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-83 Score=623.99 Aligned_cols=416 Identities=31% Similarity=0.548 Sum_probs=374.8
Q ss_pred CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc-cchHhHhccCCCCCcEEEEEeeEeecCCC---C
Q 011364 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQGS---K 99 (487)
Q Consensus 24 ~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~-~~~~~~~~~~L~~gd~V~V~G~~~~~~~~---~ 99 (487)
+.++.|+.|+|.||||+.|.+++++||+||||+|+ ||||++.+. ..|+.+ . |.+++.|.|.|++++.+.+ .
T Consensus 118 s~~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gf--lqCVl~~kl~~~yd~~-~--Ls~essv~vYG~i~~~p~GK~ap 192 (545)
T KOG0555|consen 118 STENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGF--LQCVLSDKLCQSYDAL-T--LSTESSVTVYGTIKKLPEGKSAP 192 (545)
T ss_pred cccccCceEEeehhhHhhhhcCceEEEEEecCCce--EEEEEcchhhhhhccc-c--ccccceEEEEEEEecCcCCCCCC
Confidence 34678999999999999999999999999999986 999999764 234444 3 9999999999999998654 4
Q ss_pred ceEEEEEeEEEEEccCCCC---CCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeee
Q 011364 100 QKVELKVNKIVLVGKSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176 (487)
Q Consensus 100 ~~~el~~~~i~vls~~~~~---~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~ 176 (487)
++.||.|..++|++.|... .|+. ...+++.+.++|||-+|....+.++++|+.+++++|++|.+.||.||.+|.|+
T Consensus 193 gghEl~vdy~Eiig~Apag~~~n~ln-e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmV 271 (545)
T KOG0555|consen 193 GGHELNVDYWEIIGLAPAGGFDNPLN-EESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMV 271 (545)
T ss_pred CCceEEeeeeeeecccCCCccccccc-ccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceE
Confidence 7899999999999998764 3443 35677888899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccC
Q 011364 177 ASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAE 256 (487)
Q Consensus 177 ~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E 256 (487)
....||++.+|.. +|||.++||+||+|||++....++++||+|.++||+|
T Consensus 272 QTQVEGGsTLFkl------------------------------dYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAE 321 (545)
T KOG0555|consen 272 QTQVEGGSTLFKL------------------------------DYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAE 321 (545)
T ss_pred EEEecCcceEEee------------------------------cccCchhhccchhHHHHHHhhhhcCceeEecHhhhhh
Confidence 9999999999975 7999999999999999999999999999999999999
Q ss_pred CCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcc-ccccccccccchhhhhhhhhhcCCCcccCHHH
Q 011364 257 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE-DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 335 (487)
Q Consensus 257 ~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~e 335 (487)
.++|+|||+|||++|+|++|.+++++|+.+|+|+...+.++++.+.. .+..+++.+ +....||.|+.|.|
T Consensus 322 kSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f---------~~P~~PFkRm~Y~d 392 (545)
T KOG0555|consen 322 KSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDF---------KAPKRPFKRMNYSD 392 (545)
T ss_pred hhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCC---------CCCCCchhcCCHHH
Confidence 99999999999999999999999999999999999999999876533 222222211 13567999999999
Q ss_pred HHHHHHHhcccccc--ccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccC-CCCceEEEEEEecCeeeee
Q 011364 336 AIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELI 412 (487)
Q Consensus 336 a~~~l~~~~~~~~~--~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~El~ 412 (487)
||+.|++++++-+. ..++|+|+....|+.+.+.++ .|+|+++||.++++|||+... |++.+++.|++.||||||+
T Consensus 393 AI~wLke~~vk~edg~~fefGdDI~eAaER~mtdtIg--~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIv 470 (545)
T KOG0555|consen 393 AIEWLKEHDVKKEDGTDFEFGDDIPEAAERKMTDTIG--VPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIV 470 (545)
T ss_pred HHHHHHhcCCcCccCcccccccchhhHHHHhhhhhcC--CceEEeeccccccceeeecccCccccceeeeeecCCccccc
Confidence 99999999875432 357899999999999998764 699999999999999998875 4568999999999999999
Q ss_pred chhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 413 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 413 ~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|||+|+.+.+++.+.+++.|+|+.+|.||+|.++||..||||+|||+||++||||+..+||||++|||..+||.
T Consensus 471 GGSMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~ 544 (545)
T KOG0555|consen 471 GGSMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCT 544 (545)
T ss_pred cceeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-80 Score=625.42 Aligned_cols=319 Identities=45% Similarity=0.795 Sum_probs=285.6
Q ss_pred cChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCC
Q 011364 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205 (487)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~ 205 (487)
++.++++++||||+|++..++++++||.|++++|+||.++||+||+||+|+++++++++++|.+
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~---------------- 65 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV---------------- 65 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc----------------
Confidence 4677888999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHH
Q 011364 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMA 284 (487)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~ 284 (487)
+||++++||++|||+|||+++.|++|||+|+||||||++++.||||||||||||++|+ |++|+|+
T Consensus 66 --------------~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~ 131 (322)
T cd00776 66 --------------SYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMD 131 (322)
T ss_pred --------------ccCCCcceecCCHHHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHH
Confidence 5889999999999999986655599999999999999998899999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhh
Q 011364 285 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY 364 (487)
Q Consensus 285 ~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~ 364 (487)
++|++|+++++.+.+.+..++..... .......+..||+++||.||++++++.+.. ....||.+++.++|++
T Consensus 132 ~~e~ll~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--~~~~~~~~l~~~~e~~ 203 (322)
T cd00776 132 LIEELIKYIFKRVLERCAKELELVNQ------LNRELLKPLEPFPRITYDEAIELLREKGVE--EEVKWGEDLSTEHERL 203 (322)
T ss_pred HHHHHHHHHHHHHHhccHHHHhhhhc------cCcccccCCCCceEEEHHHHHHHHHHcCCC--CCCCccchhcHHHHHH
Confidence 99999999999999887766544210 011111235689999999999999987653 1256899999999999
Q ss_pred hhhccccCccEEEEecCCcCccccccccC-CCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHH
Q 011364 365 LTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 443 (487)
Q Consensus 365 l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~ 443 (487)
|++.+.+ +|+||+|||.+++|||++.++ ++++++|||||++|++||+||++|++|+++|+++++++|+++..++|||+
T Consensus 204 l~~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~ 282 (322)
T cd00776 204 LGEIVKG-DPVFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLD 282 (322)
T ss_pred HHHHhCC-CcEEEECCccccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 9876533 799999999999999987665 44799999999999669999999999999999999999999999999999
Q ss_pred HHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 444 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 444 ~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
|+++|+|||||||||||||+|++||.+|||||++|||+|+
T Consensus 283 a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 322 (322)
T cd00776 283 LRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322 (322)
T ss_pred HHHCCCCCCceeeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999999999999999999999985
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-78 Score=612.64 Aligned_cols=318 Identities=29% Similarity=0.496 Sum_probs=279.5
Q ss_pred ChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCC----CceeeecCCCcccccCC
Q 011364 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE----QFCVTTLIPSSREAAES 202 (487)
Q Consensus 127 ~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~----~F~vt~~~~~~~~~~~~ 202 (487)
+.+...++|++++|++.++++|++||+|++++|+||.++||+||+||+|+++++++.+. +|.+.
T Consensus 9 ~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~------------ 76 (335)
T PRK06462 9 EYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQI------------ 76 (335)
T ss_pred chhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCcccc------------
Confidence 55666689999999999999999999999999999999999999999999987764332 23221
Q ss_pred CCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCC--CcccccccceeeEEccCCHH
Q 011364 203 PVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLK 280 (487)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~ 280 (487)
..+||++++||++|||+|||++++|++||||||||||||++++ .||||||||||||++|+|++
T Consensus 77 ---------------~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~ 141 (335)
T PRK06462 77 ---------------SIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLD 141 (335)
T ss_pred ---------------ccccCCCceeeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHH
Confidence 1358899999999999999999999999999999999999966 69999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchH
Q 011364 281 DDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360 (487)
Q Consensus 281 ~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~ 360 (487)
|+|+++|+||+++++.+.++++.++...+... ..+..||+++||.||+++|++.+.+ ..++.+++..
T Consensus 142 dlm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~---------~~~~~p~~rit~~eA~~~l~~~~~~----~~~~~~l~~~ 208 (335)
T PRK06462 142 EVMDLIEDLIKYLVKELLEEHEDELEFFGRDL---------PHLKRPFKRITHKEAVEILNEEGCR----GIDLEELGSE 208 (335)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhcCCcc---------ccCCCCCeEEEHHHHHHHHHhcCCC----cchHHHHhHH
Confidence 99999999999999999988876665543210 0134689999999999999887654 2346688889
Q ss_pred HHhhhhhccccCccEEEEecCCcCccccccccC-CCCceEEEEEEec-CeeeeechhHhhchHHHHHHHHHHcCCCcccH
Q 011364 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSY 438 (487)
Q Consensus 361 ~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~-G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~ 438 (487)
.|++|.+.+ . +||||+|||.+++|||++.++ ++.+++|||||++ |+|||+||++|+++++++.++++++|++++.+
T Consensus 209 ~E~~l~~~~-~-~p~fi~~yP~~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~ 286 (335)
T PRK06462 209 GEKSLSEHF-E-EPFWIIDIPKGSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKY 286 (335)
T ss_pred HHHHHHHHh-C-CCEEEECCChhhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHH
Confidence 999987654 4 799999999999999987654 5578899999997 77999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 439 WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 439 ~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
+|||+|+++|+|||||||||+|||+|++||.+|||||++|||++|+..
T Consensus 287 ~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~Irdv~~FPr~~g~~~ 334 (335)
T PRK06462 287 KWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPFPRVPGIVA 334 (335)
T ss_pred HHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCchheeeeccCCCCCCC
Confidence 999999999999999999999999999999999999999999999853
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-78 Score=612.49 Aligned_cols=315 Identities=40% Similarity=0.689 Sum_probs=261.6
Q ss_pred hhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCC
Q 011364 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207 (487)
Q Consensus 128 ~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~ 207 (487)
.++++++||||+|++..+++|++||.|++++|+||.++||+||+||+|++++++|++++|.+.. ..
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~-~~------------- 67 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDS-EP------------- 67 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEE-ST-------------
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCcccccccccc-ch-------------
Confidence 4678899999999999999999999999999999999999999999999999999999998743 11
Q ss_pred CCCCCCCccccccccCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHH
Q 011364 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
.+||++++||++|||+||| ++++|++|||||+||||||+++|.||+|||||||||++|+|++++|+++
T Consensus 68 -----------~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~ 136 (335)
T PF00152_consen 68 -----------GKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLI 136 (335)
T ss_dssp -----------TEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHH
T ss_pred -----------hhhcccceecCcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHH
Confidence 3689999999999999996 6677799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhcccccc-------------cccc
Q 011364 287 TAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF-------------LVKW 353 (487)
Q Consensus 287 e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~-------------~~~~ 353 (487)
|+||+++++.+.++.... . +.-.+..+|++++|.||++.+...+..... ...+
T Consensus 137 e~li~~i~~~~~~~~~~~-~-------------~~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 202 (335)
T PF00152_consen 137 EELIKYIFKELLENAKEL-S-------------LNIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEV 202 (335)
T ss_dssp HHHHHHHHHHHHHHHHHH-H-------------TCEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHC
T ss_pred HHHHHHHHHHHhccCccc-c-------------ccccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchH
Confidence 999999999987441100 0 011233569999999999998875422211 0123
Q ss_pred ccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCC-CceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcC
Q 011364 354 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432 (487)
Q Consensus 354 ~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~-~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g 432 (487)
|.++...+|+.|++.... .|+||+|||..++|||++.++++ .+++|||||++| +||+|||+|++++++|++++++.+
T Consensus 203 ~~~l~~~~e~~L~~~~~~-~p~fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~~~~~ 280 (335)
T PF00152_consen 203 GRLLSEEVEPYLVEKYFT-DPVFITDYPAEQSPFYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERFEEQG 280 (335)
T ss_dssp HHHHHHHHHHHHHHHHSS-SEEEEEEEBGGGSTTTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcccC-CcEEEEecccccCcccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHhhhcc
Confidence 556777888877754544 89999999999999999888776 799999999999 599999999999999999999999
Q ss_pred CCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 433 LNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 433 ~~~~~----~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
++++. ++|||+|+++|+|||||||||+|||+|++||.+|||||++|||+.+
T Consensus 281 ~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 281 IDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp HHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred cccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCCCcHHheecCCCCCC
Confidence 88777 8999999999999999999999999999999999999999999863
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-73 Score=564.91 Aligned_cols=412 Identities=22% Similarity=0.329 Sum_probs=318.2
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHh--HhccCCCCCcEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ--VKSGLITTGASIW 87 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~--~~~~~L~~gd~V~ 87 (487)
++..|.++.-. .+|++|.+|||+...|.+|.++|..|||.+|. +|+.++.+.....+ ... ++.+|+|.
T Consensus 34 ~t~~~~el~~~------~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~--v~~e~vv~ 103 (628)
T KOG2411|consen 34 RTSLCGELSVN------DVGKKVVLCGWLELHRVHKMLTFFNLRDAYGI--VQQLLSPDSFPLAQKLEND--VPLEDVVQ 103 (628)
T ss_pred hhccchhhccC------ccCCEEEEeeeeeeeeccccceEEEeeccCcc--eEEEecchhhhHHhcccCC--CChhheEe
Confidence 66778888765 89999999999999999999999999999975 88888876432222 234 89999999
Q ss_pred EEeeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCCccc-------cChhhhhhcccccCCChhhHHHHHHHHH
Q 011364 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR-------VSREFLRTKAHLRPRTNTFGAVARVRNA 153 (487)
Q Consensus 88 V~G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~~~~-------~~~~~~r~~r~l~~R~~~~~~~~~~Rs~ 153 (487)
|.|+++.++. ..+.+|+.++++++++++...+|+...+ .+..+..++||||||.+.++..+|+||.
T Consensus 104 v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~ 183 (628)
T KOG2411|consen 104 VEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSN 183 (628)
T ss_pred eeeeEecccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHH
Confidence 9999987632 3578999999999999998878875322 2333344899999999999999999999
Q ss_pred HHHHHHHhhhc-CCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccch
Q 011364 154 LAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSG 232 (487)
Q Consensus 154 i~~~iR~ff~~-~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Sp 232 (487)
+...+|+||.+ .||+||+||+|...+++|+.++...|+.+. +.|| .|.|||
T Consensus 184 ~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~EFvVPtr~~~------------------------g~FY----aLpQSP 235 (628)
T KOG2411|consen 184 VVKKIRRYLNNRHGFVEVETPTLFKRTPGGAREFVVPTRTPR------------------------GKFY----ALPQSP 235 (628)
T ss_pred HHHHHHHHHhhhcCeeeccCcchhccCCCccceeecccCCCC------------------------Ccee----ecCCCH
Confidence 99999999976 569999999999999999988553332221 3576 488999
Q ss_pred hhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcccccccccc
Q 011364 233 QLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 311 (487)
Q Consensus 233 ql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~ 311 (487)
|.||| ||++|++|||||++|||+|+++.+|+ |||||+|+||+|.+.+++|+++|++|++++....+..
T Consensus 236 QQfKQlLMvsGidrYyQiARCfRDEdlR~DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~~---------- 304 (628)
T KOG2411|consen 236 QQFKQLLMVSGIDRYYQIARCFRDEDLRADRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGIQ---------- 304 (628)
T ss_pred HHHHHHHHHhchhhHHhHHhhhcccccCcccC-CcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCCC----------
Confidence 99998 68999999999999999999998998 9999999999999999999999999999998876521
Q ss_pred ccchhhhhhhhhhcCCCcccCHHHHHHH----------------------------------------------------
Q 011364 312 IEKGIIDRLSTVAERDFVQLSYTDAIEL---------------------------------------------------- 339 (487)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~it~~ea~~~---------------------------------------------------- 339 (487)
+..||++|||+||++.
T Consensus 305 ------------l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~ 372 (628)
T KOG2411|consen 305 ------------LPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSNY 372 (628)
T ss_pred ------------CCCCcccccHHHHHHHhCCCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEeccccccchhh
Confidence 1123333333333322
Q ss_pred ---------------------------------------------HHHhccccccc--cccccc-------------cch
Q 011364 340 ---------------------------------------------LIKAKKKFEFL--VKWGCD-------------LQS 359 (487)
Q Consensus 340 ---------------------------------------------l~~~~~~~~~~--~~~~~~-------------l~~ 359 (487)
.+..+..-++- ..||.- +..
T Consensus 373 ~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~ 452 (628)
T KOG2411|consen 373 KKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQD 452 (628)
T ss_pred HHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHHH
Confidence 11111100000 011110 001
Q ss_pred HHHhhhhhccccCccEEEEecCCc-------------CccccccccCC-------CC--ceEEEEEEecCeeeeechhHh
Q 011364 360 EHERYLTEEAFGGCPVIVSDYPKE-------------IKAFYMRQNDD-------GR--TVAAMDMLVPRIGELIGGSQR 417 (487)
Q Consensus 360 ~~e~~l~e~~~~~~p~fi~~~P~~-------------~~pf~~~~~~~-------~~--~~~~fdl~~~G~~El~~G~~r 417 (487)
.+.+-+..+. ....+||+|||.. ++||++++.+| +. ....|||++||+ ||+|||.|
T Consensus 453 l~~~~l~d~~-~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDlV~NGv-ElGGGSiR 530 (628)
T KOG2411|consen 453 LLVKNLRDKS-KFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDLVVNGV-ELGGGSIR 530 (628)
T ss_pred HHhccccccc-cceEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcceeeeEEccE-eecCceeE
Confidence 1111111111 1268999999995 68999887653 11 346799999998 99999999
Q ss_pred hchHHHHHHHHHHc-CCCcccH--HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 418 EERLEYLEGRLDEL-KLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 418 ~~~~~~~~~~~~~~-g~~~~~~--~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
+|+.+.|+-.++.. +++.+.+ ++.|+|+.+|+|||||||+|+|||+|+|||+.||||||+||+....
T Consensus 531 Ihn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDVIAFPKt~~G 600 (628)
T KOG2411|consen 531 IHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDVIAFPKTTTG 600 (628)
T ss_pred ecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCchheeeeccccCCc
Confidence 99999999999854 5554444 4788999999999999999999999999999999999999998654
|
|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-70 Score=555.09 Aligned_cols=297 Identities=21% Similarity=0.296 Sum_probs=245.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 142 ~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
+.++++|++||.+++++|+||.++||+||+||+|+++++++++++|.+ . .+|
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~-~---------------------------~~~ 53 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFIT-H---------------------------HNA 53 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEe-c---------------------------cCC
Confidence 568899999999999999999999999999999999888777888864 1 147
Q ss_pred cCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhcc
Q 011364 222 FEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300 (487)
Q Consensus 222 ~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~ 300 (487)
|+.++||++|||+||| ++++|++|||+|+||||||++ ++||||||||||||++|++++|+|+++|++|+++++.+.+.
T Consensus 54 ~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~ 132 (329)
T cd00775 54 LDMDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGK 132 (329)
T ss_pred CCcceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 7999999999999995 678899999999999999999 68999999999999999999999999999999999998765
Q ss_pred CccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhcc---------------------ccccccccccccch
Q 011364 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK---------------------KFEFLVKWGCDLQS 359 (487)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~---------------------~~~~~~~~~~~l~~ 359 (487)
+ ++.+.+.. .....||+++||.||++.+..... +++....|+..+..
T Consensus 133 ~--~~~~~~~~----------~~~~~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 200 (329)
T cd00775 133 T--KIEYGGKE----------LDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDK 200 (329)
T ss_pred c--eeecCCcc----------ccCCCCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 3 23222110 012358999999999986632110 01001123334444
Q ss_pred HHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc------CC
Q 011364 360 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KL 433 (487)
Q Consensus 360 ~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~------g~ 433 (487)
.+++++.+.+ + +|+||+|||+.++|||++.++++++++|||||++|+ ||+||++|+++++++++++++. +.
T Consensus 201 l~~~~ve~~~-~-~p~fi~~yP~~~~~f~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~ 277 (329)
T cd00775 201 LFEEFVEPTL-I-QPTFIIDHPVEISPLAKRHRSNPGLTERFELFICGK-EIANAYTELNDPFDQRERFEEQAKQKEAGD 277 (329)
T ss_pred HHHHHhcccc-C-CCEEEECCChHhCcCcCcCCCCCCeeEEEEeEECCE-EEEcccchhCCHHHHHHHHHHHHHHHHcCC
Confidence 5556555444 4 799999999999999986666778999999999998 9999999999999999888653 55
Q ss_pred Cccc--HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 434 NRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 434 ~~~~--~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
++.. .+|||+|+++|+|||||||||+|||+|++||.+|||||++||++.
T Consensus 278 ~~~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 278 DEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred CccccchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 5543 489999999999999999999999999999999999999999975
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-69 Score=541.04 Aligned_cols=290 Identities=22% Similarity=0.277 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeecc-CCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~-~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (487)
|++||.+++++|+||.++||+||+||+|+++ .+++++++|.+...+ .+++++++
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~-------------------------~~~~~~~~ 55 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLG-------------------------PDGEGRPL 55 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccC-------------------------CCCCCcce
Confidence 5789999999999999999999999999998 467888999753211 12457899
Q ss_pred ccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcccc
Q 011364 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305 (487)
Q Consensus 227 ~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l 305 (487)
||++||||||| ++++|++||||||||||||++ +.||||||||||||++|.|++|+|+++|+||+++++.+.
T Consensus 56 yL~~Spql~lk~ll~~g~~rVfeigp~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~~------- 127 (304)
T TIGR00462 56 YLQTSPEYAMKRLLAAGSGPIFQICKVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDPF------- 127 (304)
T ss_pred eeecCHHHHHHHHHhccCCCEEEEcCceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-------
Confidence 99999999995 889999999999999999999 689999999999999999999999999999999987621
Q ss_pred ccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhh---hccc-cCccEEEEecC
Q 011364 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT---EEAF-GGCPVIVSDYP 381 (487)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~---e~~~-~~~p~fi~~~P 381 (487)
.+|.+.++.+.+++.++.++.+.+.+++.+++++.|..+ .++.++.+.+|+++. ++.+ .++|+||+|||
T Consensus 128 ---~~~~~it~~ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP 200 (304)
T TIGR00462 128 ---APWERLSYQEAFLRYAGIDPLTASLDELAAAAAAHGVRA----SEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYP 200 (304)
T ss_pred ---CCcEEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCC----CCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCc
Confidence 234445666777777777777788888888888877543 456688888888774 3333 23799999999
Q ss_pred CcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCCCCcc
Q 011364 382 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHA 453 (487)
Q Consensus 382 ~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-------~g~~~~~~-~~yl~~~~~G~pP~~ 453 (487)
..++|||++.++++++++|||||++|+ ||+||++|+++++++++++++ .|+++..+ +|||+|+++|+||||
T Consensus 201 ~~~~~~~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~ 279 (304)
T TIGR00462 201 ASQAALARISPDDPRVAERFELYIKGL-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECS 279 (304)
T ss_pred cccCcCccccCCCCCeeEEEEEEECCE-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCC
Confidence 999999876555667899999999997 999999999999998888765 78888888 689999999999999
Q ss_pred ceeccHHHHHHHHcCCCCccccccc
Q 011364 454 GFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 454 G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
|||||+|||+|++||.+|||||++|
T Consensus 280 G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 280 GVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred ceEEcHHHHHHHHhCCCchhhcccC
Confidence 9999999999999999999999998
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-68 Score=524.50 Aligned_cols=260 Identities=27% Similarity=0.480 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc--Ccc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--EKP 225 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 225 (487)
|++||.+++.+|+||.++||+||+||+|+++++++++++|.+ +|+ |++
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~------------------------------~~~~~g~~ 50 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLV------------------------------KYNALGLD 50 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEe------------------------------eecCCCCc
Confidence 578999999999999999999999999999989888899976 233 789
Q ss_pred cccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccc
Q 011364 226 AFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED 304 (487)
Q Consensus 226 ~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~ 304 (487)
+||++|||+|+| ++++|++|||+|+||||+|+. +.+|++||||||||++|.|++|+|+++|++|+++++.+.+.+..+
T Consensus 51 ~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~e~~-~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~ 129 (269)
T cd00669 51 YYLRISPQLFKKRLMVGGLDRVFEINRNFRNEDL-RARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVT 129 (269)
T ss_pred EEeecCHHHHHHHHHhcCCCcEEEEecceeCCCC-CCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999996 567889999999999999955 899999999999999999999999999999999999998766544
Q ss_pred cccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcC
Q 011364 305 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384 (487)
Q Consensus 305 l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~ 384 (487)
+... + ..+..||++|||.||++.+. +|+||+|||...
T Consensus 130 ~~~~-----------~-~~~~~~~~rit~~ea~~~~~-------------------------------~p~fi~d~P~~~ 166 (269)
T cd00669 130 YGFE-----------L-EDFGLPFPRLTYREALERYG-------------------------------QPLFLTDYPAEM 166 (269)
T ss_pred cccc-----------c-cccCCCceEeeHHHHHHHhC-------------------------------CceEEECCCccc
Confidence 3211 0 12456899999999987531 599999999999
Q ss_pred ccccccccC-CCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCccceeccH
Q 011364 385 KAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGF 459 (487)
Q Consensus 385 ~pf~~~~~~-~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~----~~~~yl~~~~~G~pP~~G~giGi 459 (487)
+|||++.++ ++++++|||||++|+ ||+||++|+|++++|.+++++.+++++ .++|||+|+++|+|||||||||+
T Consensus 167 ~~fy~~~~~~~~~~~~~fdl~~~g~-Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGi 245 (269)
T cd00669 167 HSPLASPHDVNPEIADAFDLFINGV-EVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGI 245 (269)
T ss_pred CCCCCCcCCCCCCeEEEEEEeeCCE-EEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHH
Confidence 999887654 467899999999996 999999999999999999999999988 89999999999999999999999
Q ss_pred HHHHHHHcCCCCcccccccCCCC
Q 011364 460 ERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 460 dRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
|||+|++||.+|||||++|||++
T Consensus 246 eRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 246 DRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred HHHHHHHhCCCcHHHcccCCCCC
Confidence 99999999999999999999986
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=498.86 Aligned_cols=291 Identities=18% Similarity=0.181 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCC-CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (487)
..+|++|+.|++++|+||.++||+||+||+|+..+..+ ...+|.+....+ ....+
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~------------------------~~~~~ 57 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGP------------------------GASQG 57 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccc------------------------cccCC
Confidence 46899999999999999999999999999998766433 334554311100 00127
Q ss_pred cccccccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCc
Q 011364 224 KPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 302 (487)
Q Consensus 224 ~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~ 302 (487)
+++||++|||+++ ++++++++|||+||||||||++ +.||++||||||||++|.|++|+|+++|+||++++..
T Consensus 58 ~~~~L~~SPe~~~kr~la~~~~rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~------ 130 (306)
T PRK09350 58 KTLWLMTSPEYHMKRLLAAGSGPIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------ 130 (306)
T ss_pred cceEEecCHHHHHHHHhhccccceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc------
Confidence 8899999999998 5888999999999999999999 8999999999999999999999999999999999753
Q ss_pred cccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhh---hhhccc-cCccEEEE
Q 011364 303 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY---LTEEAF-GGCPVIVS 378 (487)
Q Consensus 303 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~---l~e~~~-~~~p~fi~ 378 (487)
.+|...++.+.++++++.+....+..++.+.+.+.|.. .....+.++.+..++. ++++.+ .+.|+||+
T Consensus 131 ------~~~~~i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~ 202 (306)
T PRK09350 131 ------EPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLS--NIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVY 202 (306)
T ss_pred ------CCceEEEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCC--CcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 12223344556666666666666777777666665541 0011122333333332 344443 23699999
Q ss_pred ecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-------cCCCcccHH-HHHHHHhcCCC
Q 011364 379 DYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSYW-WYLDLRHYGSV 450 (487)
Q Consensus 379 ~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-------~g~~~~~~~-~yl~~~~~G~p 450 (487)
|||.+++|||++.++++++++|||||++|+ ||+||++|+++++++++++++ .|.++..++ |||+|+++|+|
T Consensus 203 ~yP~~~~~~a~~~~~~~~~~~rfdl~i~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~p 281 (306)
T PRK09350 203 HFPASQAALAKISTEDHRVAERFEVYFKGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLP 281 (306)
T ss_pred cCccccCccccccCCCCCeeEEEEEEECCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCC
Confidence 999999999876666778999999999998 999999999999999999864 678888884 59999999999
Q ss_pred CccceeccHHHHHHHHcCCCCcccc
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv 475 (487)
||||||||||||+|++||++|||||
T Consensus 282 p~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 282 DCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred CCCceEecHHHHHHHHcCCCCcccC
Confidence 9999999999999999999999997
|
|
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-63 Score=491.00 Aligned_cols=271 Identities=29% Similarity=0.455 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (487)
|++||++++++|+||.++||+||+||+|++++++|+++ |.+.. . ...+..+|
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~-~--------------------------~~~~~~~~ 52 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPS-R--------------------------LHPGKFYA 52 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceecc-c--------------------------cCCCceee
Confidence 57899999999999999999999999999999988766 65421 1 01133456
Q ss_pred cccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccc
Q 011364 228 LTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMD 306 (487)
Q Consensus 228 L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~ 306 (487)
|++|||+||| ++++|++|||+|+||||+|++++.|| +||||||||++|.|++++|+++|++|++++..+.+.
T Consensus 53 L~~Spql~lk~ll~~g~~~v~~i~~~fR~e~~~~~r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~------ 125 (280)
T cd00777 53 LPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV------ 125 (280)
T ss_pred cccCHHHHHHHHHhcCcCcEEEeccceeCCCCCCCcc-ceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC------
Confidence 9999999997 67899999999999999999977666 599999999999999999999999999999887542
Q ss_pred cccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEe-cCCcCc
Q 011364 307 FFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-YPKEIK 385 (487)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~-~P~~~~ 385 (487)
....||+++||.||++.+ +. ...|+.|+... +. ....++++++++ ||+...
T Consensus 126 ----------------~~~~p~~rity~eA~~~~---~~----~~~~~~d~~~~-~~----~~~~~~~~~~~~pf~~~~~ 177 (280)
T cd00777 126 ----------------ELTTPFPRMTYAEAMERY---GF----KFLWIVDFPLF-EW----DEEEGRLVSAHHPFTAPKE 177 (280)
T ss_pred ----------------CCCCCCceeeHHHHHHHh---CC----CCccccCCccc-CC----hhHHHHHHHHhCCCcCCCc
Confidence 124589999999999864 22 13466554310 00 000113334444 443322
Q ss_pred ---cccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCC----cccHHHHHHHHhcCCCCccceecc
Q 011364 386 ---AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLG 458 (487)
Q Consensus 386 ---pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~----~~~~~~yl~~~~~G~pP~~G~giG 458 (487)
|++ +.++++++++|||||++|+ ||+||++|+|++++|++++++.|++ ++.++|||+|++||+|||||||||
T Consensus 178 ~~~~~~-~~~~~~~~~~~fdl~~~G~-Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giG 255 (280)
T cd00777 178 EDLDLL-EKDPEDARAQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALG 255 (280)
T ss_pred ccchhh-hcCCccCeeEEEEEEeCCE-EEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEh
Confidence 232 2333336899999999997 9999999999999999999999988 456799999999999999999999
Q ss_pred HHHHHHHHcCCCCcccccccCCCCC
Q 011364 459 FERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 459 idRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
+|||+|++||.+|||||++|||+.+
T Consensus 256 idRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 256 LDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred HHHHHHHHcCCCchheEeecCCCCC
Confidence 9999999999999999999999864
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=421.19 Aligned_cols=296 Identities=22% Similarity=0.244 Sum_probs=230.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
....+..|+.|++.||+||.++||+||+||.|+.++. +..-.+|.+....+ +. .+
T Consensus 12 ~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~------------------~~----~~-- 67 (322)
T COG2269 12 SIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGP------------------GG----AK-- 67 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEecc------------------Cc----cc--
Confidence 4556999999999999999999999999999998765 34445665433221 00 01
Q ss_pred CcccccccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccC
Q 011364 223 EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 301 (487)
Q Consensus 223 ~~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~ 301 (487)
+.++||++|||+|+ +|+++|.++||||++||||++. +++|+|||||||||+.++||+.+|+.+.+|++.++....
T Consensus 68 ~~~l~L~TSPEy~mKrLLAag~~~ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~--- 143 (322)
T COG2269 68 GKPLWLHTSPEYHMKRLLAAGSGPIFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVE--- 143 (322)
T ss_pred cceeeeecCcHHHHHHHHHccCCcchhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCC---
Confidence 57899999999998 7999999999999999999996 999999999999999999999999999999999987642
Q ss_pred ccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhh---hc-cccCccEEE
Q 011364 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT---EE-AFGGCPVIV 377 (487)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~---e~-~~~~~p~fi 377 (487)
.+.+ +..+.+..+++.+.....-.+..+.+++.++... -+++.++.+.+.++ |+ ++.++|+||
T Consensus 144 ~E~l---------s~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~----~~~~~d~L~~~lf~~~VEP~lg~~rpt~l 210 (322)
T COG2269 144 AERL---------SYQEAFLRYLGIDPLSADKTELREAAAKLGLSAA----TDEDWDTLLQLLFVEGVEPNLGKERPTFL 210 (322)
T ss_pred ccee---------eHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCC----CccCHHHHHHHHHHhhcCcccCCCCceEE
Confidence 1111 2334444455555444333333344444444321 12344455555443 33 445689999
Q ss_pred EecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCC
Q 011364 378 SDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGS 449 (487)
Q Consensus 378 ~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~-------~g~~~~~~-~~yl~~~~~G~ 449 (487)
+|||..++.++...+.|+.+++|||||+.|+ ||+||.-+..|.++|+++++. .|+..-++ +.||.|+.. |
T Consensus 211 y~fP~~qaaLA~i~~~D~rVAERFElY~kGi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-m 288 (322)
T COG2269 211 YHFPASQAALAQISTGDPRVAERFELYYKGI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-M 288 (322)
T ss_pred EeCcHHHHHhhccCCCCcchhhhhhheeeee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-C
Confidence 9999999999988888889999999999999 999999999999998888753 23333333 669999998 9
Q ss_pred CCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 450 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 450 pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
|||+|++||+|||+|+++|..+|.||++||...
T Consensus 289 P~cSGvALG~DRLvmLalg~~~i~~Vi~f~v~~ 321 (322)
T COG2269 289 PPCSGVALGFDRLVMLALGAESIDDVIAFPVAR 321 (322)
T ss_pred CCcccceecHHHHHHHHcCcchHHHHhhccccc
Confidence 999999999999999999999999999999763
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-21 Score=171.67 Aligned_cols=122 Identities=18% Similarity=0.339 Sum_probs=100.4
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCCCCCcEEEEE
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L~~gd~V~V~ 89 (487)
+++++++.+. ..|+.|+|+|||+++|.+|+++|++|+|++| .+|||++.+... +..++. |+.||+|.|+
T Consensus 2 ~~~~~~~~~~------~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g--~~Q~v~~~~~~~~~~~~~~--l~~gs~V~V~ 71 (135)
T cd04317 2 THYCGELRES------HVGQEVTLCGWVQRRRDHGGLIFIDLRDRYG--IVQVVFDPEEAPEFELAEK--LRNESVIQVT 71 (135)
T ss_pred ceehhhCChh------HCCCEEEEEEeEehhcccCCEEEEEEecCCe--eEEEEEeCCchhHHHHHhC--CCCccEEEEE
Confidence 5667777653 5689999999999999999999999999996 599999865433 566777 9999999999
Q ss_pred eeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCCccc---cChhhhhhcccccCCChh
Q 011364 90 GNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNT 143 (487)
Q Consensus 90 G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~ 143 (487)
|++.+++. ..+++||++++++||++| .++|+..++ .+.+...+|||||||++.
T Consensus 72 G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 72 GKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred EEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 99997643 346799999999999999 568886544 346666699999999864
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=153.95 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=88.8
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCC--ccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 011364 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~--~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~ 108 (487)
+|+|+|||+++|.+||++|++|||++| .+|||++.+ ...|+.++. |+.||+|.|+|++.+++...+++||++++
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~~--l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTG--IVQAVFSKDLNEEAYREAKK--VGIESSVIVEGAVKADPRAPGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCe--eEEEEEeCCCCHHHHHHHhC--CCCCCEEEEEEEEEECCCCCCCEEEEEEE
Confidence 389999999999999999999999996 499999865 234666777 99999999999999988777789999999
Q ss_pred EEEEccCCCCCCCCccccChhhhhhcccc
Q 011364 109 IVLVGKSDPSYPIQKKRVSREFLRTKAHL 137 (487)
Q Consensus 109 i~vls~~~~~~p~~~~~~~~~~~r~~r~l 137 (487)
++|+|+|. ++|++.+. +.++++++|||
T Consensus 77 i~vl~~a~-~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE-FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC-CCccCCCC-CHHHHhhccCC
Confidence 99999996 68998664 88899999986
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-19 Score=149.70 Aligned_cols=101 Identities=19% Similarity=0.353 Sum_probs=86.5
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcEEEEE
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~V~V~ 89 (487)
+++++... ..|+.|+|+|||+++|.+|+++|++|||++| .+|+|++.+. ..|+.++. |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~es~V~V~ 71 (108)
T cd04316 2 YSAEITPE------LDGEEVTVAGWVHEIRDLGGIKFVILRDREG--IVQVTAPKKKVDKELFKTVRK--LSRESVISVT 71 (108)
T ss_pred ChhhCchh------hCCCEEEEEEEEEeeeccCCeEEEEEecCCe--eEEEEEeCCCCCHHHHHHHhC--CCCcCEEEEE
Confidence 45566543 5789999999999999999999999999997 4999998653 23667777 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEccCCCCCCCCc
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQK 123 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~ 123 (487)
|++.+++...+++||+++++++|++|..++|++.
T Consensus 72 G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~ 105 (108)
T cd04316 72 GTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDP 105 (108)
T ss_pred EEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCc
Confidence 9999988777789999999999999987788864
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=147.40 Aligned_cols=102 Identities=23% Similarity=0.338 Sum_probs=82.4
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
.|+|+|||+++|.+|+++|++|+|+++ .+|||++.+. ..|..+.+ .|+.||+|.|+|++.+++++ ++||+++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~~-~l~~g~~V~v~G~v~~~~~g--~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESG--KIQVYVNKDDLGEEEFEDFKK-LLDLGDIIGVTGTPFKTKTG--ELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCe--EEEEEEECCCCCHHHHHHHHh-cCCCCCEEEEEEEEEecCCC--CEEEEeC
Confidence 389999999999999999999999995 6999998653 33444322 29999999999999998874 7999999
Q ss_pred EEEEEccCCCCCCCCcccc---ChhhhhhcccccC
Q 011364 108 KIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRP 139 (487)
Q Consensus 108 ~i~vls~~~~~~p~~~~~~---~~~~~r~~r~l~~ 139 (487)
+++|||+|. +|+|.+.+ +.++.+++||||+
T Consensus 76 ~~~ils~~~--~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 76 EFTLLSKSL--RPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeEEeeccC--CCCCCCccCcCChhheeecccccC
Confidence 999999997 45554433 4566668999885
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-17 Score=130.93 Aligned_cols=81 Identities=41% Similarity=0.808 Sum_probs=73.2
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEE
Q 011364 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (487)
Q Consensus 32 V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~v 111 (487)
|+|+|||+++|.+|+++|++|||+++.+++||+++.+...|+.++. |+.||+|.|+|.+.+++.+.+++||+++++++
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~i 79 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILK--LSTGSSIRVEGVLVKSPGAKQPFELQAEKIEV 79 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHHHHhc--CCCceEEEEEEEEEeCCCCCCCEEEEEEEEEE
Confidence 8999999999999999999999999866899999876555677778 99999999999999998777799999999999
Q ss_pred Ecc
Q 011364 112 VGK 114 (487)
Q Consensus 112 ls~ 114 (487)
++.
T Consensus 80 l~~ 82 (82)
T cd04318 80 LGE 82 (82)
T ss_pred ecC
Confidence 863
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.1e-17 Score=136.29 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=75.2
Q ss_pred EEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCc-----cchHhHhccCCCCCcEEEEEeeEeecCCC-----C
Q 011364 31 MIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQVKSGLITTGASIWIQGNVVPSQGS-----K 99 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~-----~~~~~~~~~~L~~gd~V~V~G~~~~~~~~-----~ 99 (487)
.|+|+|||+++|.+| +++|++|||+++ .+||+++... ..++.++. |+.||+|.|+|++.++++. .
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~ 76 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGY--TIQGVLAASAEGVSKQMVKWAGS--LSKESIVDVEGTVKKPEEPIKSCTQ 76 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCc--eEEEEEeCCcccCCHHHHHHHhc--CCCccEEEEEEEEECCCCcccCCCc
Confidence 389999999999998 999999999996 5999998653 12445667 9999999999999987552 2
Q ss_pred ceEEEEEeEEEEEccCCCCCCCCc
Q 011364 100 QKVELKVNKIVLVGKSDPSYPIQK 123 (487)
Q Consensus 100 ~~~el~~~~i~vls~~~~~~p~~~ 123 (487)
+++||+++++++|++|...+|++.
T Consensus 77 ~~~El~~~~i~il~~~~~~~P~~~ 100 (102)
T cd04320 77 QDVELHIEKIYVVSEAAEPLPFQL 100 (102)
T ss_pred CcEEEEEEEEEEEecCCCCCCCCC
Confidence 689999999999999976688754
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-17 Score=159.95 Aligned_cols=198 Identities=21% Similarity=0.320 Sum_probs=129.2
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc-Ccc---cc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EKP---AF 227 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~ 227 (487)
..++..++++|.+.||.|++.|.+.+. .+..+.+|.+++|+|++- ...|| +.. .-
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~d-------~~NFDaLn~P~dHPARdm--------------qDTFy~~~~~~~~l 172 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIETD-------FYNFDALNIPQDHPARDM--------------QDTFYLKDDREKLL 172 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCccccc-------ccchhhhcCCCCCCcccc--------------cceEEEcCCCCcee
Confidence 348889999999999999999966552 233344444444443321 01233 221 23
Q ss_pred cccchhhh-HHHHhcc---CCceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHHHHHHHHhhccC
Q 011364 228 LTVSGQLN-AETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVVRYILDNC 301 (487)
Q Consensus 228 L~~Spql~-l~ll~~g---~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~~~~~~~~~~ 301 (487)
|++..--. -+.|... =-|+|.+|+|||+|.. +.+|+|||+|+|.-... .++.+|+-.++++++.++..-
T Consensus 173 LRTHTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~~---- 247 (335)
T COG0016 173 LRTHTSPVQARTLAENAKIPIKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGED---- 247 (335)
T ss_pred ecccCcHhhHHHHHhCCCCCceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCCC----
Confidence 33322222 2444443 3589999999999998 79999999999964432 245555555555444432110
Q ss_pred ccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecC
Q 011364 302 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 381 (487)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P 381 (487)
..+. +.+.++
T Consensus 248 -----------------------------------------------~~vR------------frpsyF----------- 257 (335)
T COG0016 248 -----------------------------------------------VKVR------------FRPSYF----------- 257 (335)
T ss_pred -----------------------------------------------cceE------------eecCCC-----------
Confidence 0001 223344
Q ss_pred CcCccccccccCCCCceEEEEEEecC---eeeeechhHhhchHHHHHHHHHHcCCCcccH-HHHHHHHhcCCCCccceec
Q 011364 382 KEIKAFYMRQNDDGRTVAAMDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNRDSY-WWYLDLRHYGSVPHAGFGL 457 (487)
Q Consensus 382 ~~~~pf~~~~~~~~~~~~~fdl~~~G---~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~-~~yl~~~~~G~pP~~G~gi 457 (487)
||+.| +...|++++| +=||+|+++-. .+.++..|++++.| .| .|||
T Consensus 258 ----PFTEP-------S~Evdv~~~~~~~WlEi~G~Gmv~------P~VL~~~G~~~~~~~Gf-------------AfGl 307 (335)
T COG0016 258 ----PFTEP-------SAEVDVYCPGCGGWLEILGCGMVH------PNVLEAVGIDPEEYSGF-------------AFGL 307 (335)
T ss_pred ----CCCCC-------eEEEEEEEcCCCCEEEEecccccC------HHHHHhcCCCCCcceEE-------------EEee
Confidence 78765 5668888873 45999999988 77888999887654 22 6899
Q ss_pred cHHHHHHHHcCCCCcccc
Q 011364 458 GFERLVQFATGVENIRDA 475 (487)
Q Consensus 458 GidRL~m~l~g~~~Irdv 475 (487)
|+|||.|+.+|+++||+.
T Consensus 308 GlERlAMLkygI~DIR~l 325 (335)
T COG0016 308 GLERLAMLKYGIPDIRDL 325 (335)
T ss_pred cHHHHHHHHhCCcHHHHH
Confidence 999999999999999974
|
|
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=129.82 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=71.5
Q ss_pred EEEEEEEEeeeec-CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCC----ceEEEE
Q 011364 31 MIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK----QKVELK 105 (487)
Q Consensus 31 ~V~v~GwV~~iR~-~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~----~~~el~ 105 (487)
+|+|+|||+++|+ +|+++|++|||++| ..+||+++.+...|+.++. |+.||+|.|+|++.+++.+. +++||.
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~--l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~ 77 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG-DIIQLVSTAKKDAFSLLKS--ITAESPVQVRGKLQLKEAKSSEKNDEWELV 77 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC-CEEEEEECCCHHHHHHHhc--CCCCcEEEEEEEEEeCCCcCCCCCCCEEEE
Confidence 3899999999999 69999999999998 4699999876556777778 99999999999999988654 789999
Q ss_pred EeEEEEEcc
Q 011364 106 VNKIVLVGK 114 (487)
Q Consensus 106 ~~~i~vls~ 114 (487)
++++++|++
T Consensus 78 ~~~i~il~~ 86 (86)
T cd04321 78 VDDIQTLNA 86 (86)
T ss_pred EEEEEEecC
Confidence 999999984
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=154.45 Aligned_cols=206 Identities=18% Similarity=0.238 Sum_probs=127.4
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
+++.+.||++|...||.||.+|.+.+.. .....++.+++|++++..+.+.-..+. .......-|+++
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~-------~nFD~Ln~p~dHpaR~~~Dtfyi~~p~------~~~~~~~vLRTh 86 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEF-------YNFDALNIPQDHPARDMQDTFYISNPY------SAEEDYSVLRTH 86 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHH-------HHTGGGTSTTTSCGGCGTTSEBSCSSS------BCECSSEEE-SS
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeH-------HHHHhhCcCCCccccccccceeeeccc------cccchhhhhhhh
Confidence 4578899999999999999999997631 112445544444433211111000000 000233345543
Q ss_pred hhhhH-HHHh---ccCCceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHHHHHHhhccCcccc
Q 011364 232 GQLNA-ETYA---TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVVRYILDNCKEDM 305 (487)
Q Consensus 232 pql~l-~ll~---~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~~~~~~~~~~~~l 305 (487)
.--.+ +.|. ..=-|+|+||+|||+|.. +.+|+|||+|+|.-.... ++.++...++.++++++..
T Consensus 87 ts~~~~~~l~~~~~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~--------- 156 (247)
T PF01409_consen 87 TSPGQLRTLNKHRPPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGI--------- 156 (247)
T ss_dssp THHHHHHHHTTTSHSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTT---------
T ss_pred hhHHHHHHHHHhcCCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhc---------
Confidence 33333 4441 123589999999999998 799999999999877654 4667766666666655311
Q ss_pred ccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCc
Q 011364 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (487)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~ 385 (487)
+. .++ +.+.++
T Consensus 157 ----------------------------------------~~--~~r------------~~ps~f--------------- 167 (247)
T PF01409_consen 157 ----------------------------------------DV--KVR------------FRPSYF--------------- 167 (247)
T ss_dssp ----------------------------------------TE--EEE------------EEECEE---------------
T ss_pred ----------------------------------------cc--ceE------------eecCCC---------------
Confidence 00 000 112222
Q ss_pred cccccccCCCCceEEEEEEe----c-CeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHH
Q 011364 386 AFYMRQNDDGRTVAAMDMLV----P-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFE 460 (487)
Q Consensus 386 pf~~~~~~~~~~~~~fdl~~----~-G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGid 460 (487)
||+.+ +...|+++ + |+-||+++++-. .+.+++.|+|.+ -|..+||||+|
T Consensus 168 PfteP-------s~e~~i~~~~~~~~~wiEvgg~G~vh------P~Vl~~~gid~~-------------~~~~A~G~Gle 221 (247)
T PF01409_consen 168 PFTEP-------SREADIYCGVCKGGGWIEVGGCGMVH------PEVLENWGIDEE-------------YPGFAFGLGLE 221 (247)
T ss_dssp TTEEE-------EEEEEEEEECTTTTCEEEEEEEEEE-------HHHHHHTT--TT-------------SEEEEEEEEHH
T ss_pred CcccC-------CeEEEEEEeeccCCCceEEeeccccc------HhhhhccCcCcc-------------ceEEEecCCHH
Confidence 67755 45688888 2 334999999877 677888888722 25668999999
Q ss_pred HHHHHHcCCCCcccc
Q 011364 461 RLVQFATGVENIRDA 475 (487)
Q Consensus 461 RL~m~l~g~~~Irdv 475 (487)
||+|+..|+++||+.
T Consensus 222 Rlam~~~gi~diR~~ 236 (247)
T PF01409_consen 222 RLAMLKYGIPDIRLL 236 (247)
T ss_dssp HHHHHHHT-SSGGHH
T ss_pred HHHHHHcCCchHHHH
Confidence 999999999999974
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=157.24 Aligned_cols=199 Identities=17% Similarity=0.222 Sum_probs=126.1
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc--
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT-- 229 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-- 229 (487)
+.+.+.||++|...||.|+++|.|++.. +..+.+|.+++|++++.- +.=|.....-|+
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~-------~NFdaLn~P~dHPaR~~~-------------DTfyI~~~~lLRTh 170 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDY-------YNFEALNIPKDHPARDMQ-------------DTFYIDDGLLLRTH 170 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHH-------HHHHHhCCCCCCcccccC-------------ceEEEcCCceeecc
Confidence 4588899999999999999999997632 112334443444433211 111222223344
Q ss_pred cchhhhHHHHhcc-C-CceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHHHHHHHHhhccCcccc
Q 011364 230 VSGQLNAETYATA-L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVVRYILDNCKEDM 305 (487)
Q Consensus 230 ~Spql~l~ll~~g-~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~~~~~~~~~~~~~l 305 (487)
+||-+. +.|... . -|+|++|+|||++.. +.+|.|+|+|+|.-... .++.++...++.+++.++..-. .
T Consensus 171 TSp~qi-r~L~~~~~Pirif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg~~~-----~- 242 (339)
T PRK00488 171 TSPVQI-RTMEKQKPPIRIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFGEDV-----K- 242 (339)
T ss_pred CcHHHH-HHHHhcCCCeEEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcCCCC-----e-
Confidence 444432 444333 2 289999999999987 78999999999976655 3566666666666665542100 0
Q ss_pred ccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCc
Q 011364 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (487)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~ 385 (487)
+. +.+.++
T Consensus 243 ---------------------------------------------~R------------~rpsyF--------------- 250 (339)
T PRK00488 243 ---------------------------------------------IR------------FRPSYF--------------- 250 (339)
T ss_pred ---------------------------------------------EE------------ecCCCC---------------
Confidence 00 112222
Q ss_pred cccccccCCCCceEEEEEEec-------------CeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCc
Q 011364 386 AFYMRQNDDGRTVAAMDMLVP-------------RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPH 452 (487)
Q Consensus 386 pf~~~~~~~~~~~~~fdl~~~-------------G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~ 452 (487)
||+.| +...|+.++ |+=||+|+++-. .+.++..|+|++.|..
T Consensus 251 PFTeP-------S~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~------p~vl~~~gid~~~~~G------------ 305 (339)
T PRK00488 251 PFTEP-------SAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVH------PNVLRNVGIDPEEYSG------------ 305 (339)
T ss_pred CCCCC-------ceEEEEEEeccCCCcccccCCCCceEEeccCccC------HHHHHHcCCCcccceE------------
Confidence 56543 234555553 545999999877 6677888998764310
Q ss_pred cceeccHHHHHHHHcCCCCcccc
Q 011364 453 AGFGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 453 ~G~giGidRL~m~l~g~~~Irdv 475 (487)
-.||||+|||+|+..|+++||+.
T Consensus 306 ~AfG~GleRlaMl~ygi~DiR~~ 328 (339)
T PRK00488 306 FAFGMGIERLAMLKYGIDDIRLF 328 (339)
T ss_pred EEEeecHHHHHHHHhCCcHHHHH
Confidence 14599999999999999999964
|
|
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-16 Score=126.67 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=70.9
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCCCCCcEEEEEeeEeecCCC---CceEEEEE
Q 011364 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS---KQKVELKV 106 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L~~gd~V~V~G~~~~~~~~---~~~~el~~ 106 (487)
.|+++|||+++|.+|+++|++|||+++. +|++++.+... ++.++. |+.||+|.|+|++.+++.+ .+++||++
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~ 76 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKS--LTQESSVEVTGEVKEDPRAKQAPGGYELQV 76 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhc--CCCcCEEEEEEEEEECCcccCCCCCEEEEE
Confidence 3899999999999999999999999974 99999865433 666777 9999999999999999877 77899999
Q ss_pred eEEEEEcc
Q 011364 107 NKIVLVGK 114 (487)
Q Consensus 107 ~~i~vls~ 114 (487)
+++++|++
T Consensus 77 ~~i~vl~~ 84 (84)
T cd04323 77 DYLEIIGE 84 (84)
T ss_pred EEEEEEcC
Confidence 99999985
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-16 Score=166.56 Aligned_cols=216 Identities=14% Similarity=0.128 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhhcCCeEEEe-CCeeeccCCCCCCCCceeeecCCCcccccCC---C----------CCCCCCCCCCCccc
Q 011364 152 NALAYATHKFFQENGFIWIS-SPIITASDCEGAGEQFCVTTLIPSSREAAES---P----------VDAIPKTKDGLIDW 217 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~-TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~----------~~~~~~~~~~~~~~ 217 (487)
.+++..||++|.++||.|+. .|.+.+. --..-.+|.+++|.+++.|+... | ++++...|+.+ ..
T Consensus 224 ~~~~~ei~~if~~mGF~e~~~g~~ves~-f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G-~~ 301 (492)
T PLN02853 224 LKVRQQFRKIFLQMGFEEMPTNNFVESS-FWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESG-GY 301 (492)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCeech-hhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcC-CC
Confidence 34788899999999999994 5666552 21222234334444333333111 1 11222233211 01
Q ss_pred cccccCcccccccchhhhH---------HHHh----cc--CCceEEEecccccCCCCCCcccccccceeeEEccC--CHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA---------ETYA----TA--LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLK 280 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l---------~ll~----~g--~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~ 280 (487)
....|+.+|-...|..+-| +.|. .+ =-|+|.|++|||+|.. +.+|+|||+|+|.-.... ++.
T Consensus 302 gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~ 380 (492)
T PLN02853 302 GSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLG 380 (492)
T ss_pred CccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHH
Confidence 1122333332222222222 2222 11 2389999999999998 799999999999766532 355
Q ss_pred HHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchH
Q 011364 281 DDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 360 (487)
Q Consensus 281 ~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~ 360 (487)
+++.+++++++.+ |. ..+.
T Consensus 381 ~L~g~l~~f~~~l--------------------------------------------------g~---~~~R-------- 399 (492)
T PLN02853 381 DLIGVLEDFFSRL--------------------------------------------------GM---TKLR-------- 399 (492)
T ss_pred HHHHHHHHHHHHc--------------------------------------------------CC---ceEE--------
Confidence 5544444333221 00 0000
Q ss_pred HHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEec--C-eeeeechhHhhchHHHHHHHHHHcCCCccc
Q 011364 361 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP--R-IGELIGGSQREERLEYLEGRLDELKLNRDS 437 (487)
Q Consensus 361 ~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~--G-~~El~~G~~r~~~~~~~~~~~~~~g~~~~~ 437 (487)
+.+.++ ||+.| +...|++.+ | +=||+|+++-. .+.++..|++ +.
T Consensus 400 ----frP~yf---------------PfTEP-------S~Ei~v~~~~~gkWiEi~g~Gm~r------pevl~~~Gi~-~~ 446 (492)
T PLN02853 400 ----FKPAYN---------------PYTEP-------SMEIFSYHEGLKKWVEVGNSGMFR------PEMLLPMGLP-ED 446 (492)
T ss_pred ----EecCCC---------------CCCCC-------eEEEEEEecCCCCEEEEecCcCcC------HHHHHhCCCC-Cc
Confidence 122222 77654 344556665 5 33999999988 7778888883 32
Q ss_pred HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011364 438 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476 (487)
Q Consensus 438 ~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~ 476 (487)
+ +--+||||+|||+|+.+|++|||+..
T Consensus 447 ~------------~~~A~GlGleRlaMl~ygi~DIR~l~ 473 (492)
T PLN02853 447 V------------NVIAWGLSLERPTMILYGIDNIRDLF 473 (492)
T ss_pred c------------eEEEEEecHHHHHHHHhCCcHHHHHh
Confidence 1 23579999999999999999999864
|
|
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-16 Score=125.15 Aligned_cols=80 Identities=25% Similarity=0.548 Sum_probs=70.1
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc--hHhHhccCCCCCcEEEEEeeEeecCC---CCceEEEE
Q 011364 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQG---SKQKVELK 105 (487)
Q Consensus 31 ~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~--~~~~~~~~L~~gd~V~V~G~~~~~~~---~~~~~el~ 105 (487)
.|+|+|||+++|.+|+++|++|||+++ .+|++++.+..+ ++.++. |+.||+|.|+|++.+++. ..+++||.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~--l~~~s~V~v~G~~~~~~~~~~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEK--LRTESVVGVTGTVVKRPEGNLATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCe--eEEEEEECCcChHHHHHHhC--CCCCCEEEEEeEEEECCCCCCCCCCEEEE
Confidence 389999999999999999999999995 599999876433 556677 999999999999999875 46789999
Q ss_pred EeEEEEEcc
Q 011364 106 VNKIVLVGK 114 (487)
Q Consensus 106 ~~~i~vls~ 114 (487)
++++++|++
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999985
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-15 Score=157.56 Aligned_cols=216 Identities=15% Similarity=0.159 Sum_probs=123.7
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCC---C------------CCCCCCCCCCCcc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAES---P------------VDAIPKTKDGLID 216 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~------------~~~~~~~~~~~~~ 216 (487)
.+++..+|++|.++||.|+++|-...+.--..-.+|.+++|.+++.|+... | +++++..|+.+ .
T Consensus 232 ~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~He~G-~ 310 (494)
T PTZ00326 232 LKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVHEVG-G 310 (494)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHhccC-C
Confidence 457889999999999999998743333332333344444444444333111 1 11222333211 0
Q ss_pred ccccccCccc--------ccccchhhhH-HHHhc--------c---CCceEEEecccccCCCCCCcccccccceeeEEcc
Q 011364 217 WSQDFFEKPA--------FLTVSGQLNA-ETYAT--------A---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (487)
Q Consensus 217 ~~~~~~~~~~--------~L~~Spql~l-~ll~~--------g---~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (487)
.....|+.+| -|++-.--.. +++.. + =-|+|+|++|||+|.. +.+|+|||+|+|.....
T Consensus 311 ~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~ 389 (494)
T PTZ00326 311 YGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETL-DATHLAEFHQVEGFVID 389 (494)
T ss_pred cCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCC-CCCcCceeEEEEEEEEe
Confidence 1112233222 2322221111 23322 1 2489999999999998 79999999999998775
Q ss_pred CC--HHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccc
Q 011364 277 AD--LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 354 (487)
Q Consensus 277 ~~--~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~ 354 (487)
.+ ..+++.++.++++.+ |.. .+.
T Consensus 390 ~~~s~~~L~~~l~~f~~~l--------------------------------------------------G~~---~~R-- 414 (494)
T PTZ00326 390 RNLTLGDLIGTIREFFRRI--------------------------------------------------GIT---KLR-- 414 (494)
T ss_pred CCCCHHHHHHHHHHHHHhc--------------------------------------------------CCC---ceE--
Confidence 43 223322222222111 100 000
Q ss_pred cccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecC----eeeeechhHhhchHHHHHHHHHH
Q 011364 355 CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR----IGELIGGSQREERLEYLEGRLDE 430 (487)
Q Consensus 355 ~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G----~~El~~G~~r~~~~~~~~~~~~~ 430 (487)
+.+.++ ||+.| +...|.+++| + ||+|++.-. .+.++.
T Consensus 415 ----------frP~yf---------------PfTEP-------S~Ev~v~~~~~gkWI-EIgg~Gm~r------pevL~~ 455 (494)
T PTZ00326 415 ----------FKPAFN---------------PYTEP-------SMEIFGYHPGLKKWV-EVGNSGIFR------PEMLRP 455 (494)
T ss_pred ----------EecCCC---------------CCCCC-------eeEEEEEecCCCcEE-EEeCcCccC------HHHHHh
Confidence 122233 77754 4456677764 6 999999877 667777
Q ss_pred cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011364 431 LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476 (487)
Q Consensus 431 ~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~ 476 (487)
.|++.. + +--+||||+|||+|+.+|++|||+..
T Consensus 456 ~Gi~~~-~------------~~~A~GlGleRlaMi~ygi~DIR~l~ 488 (494)
T PTZ00326 456 MGFPED-V------------TVIAWGLSLERPTMIKYGIKNIRDLF 488 (494)
T ss_pred cCCCCc-c------------eEEEEEecHHHHHHHHhCCcHHHHHh
Confidence 787431 1 23579999999999999999999853
|
|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=149.39 Aligned_cols=112 Identities=22% Similarity=0.324 Sum_probs=76.9
Q ss_pred CChhhHHHHHH-----HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 140 RTNTFGAVARV-----RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 140 R~~~~~~~~~~-----Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
|.+..++++.. .+.+.+++|++|...||.||.||.|+.... |.. .+.. .+..
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~------~e~--~g~~----~g~~----------- 246 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEY------IER--MGID----NDTE----------- 246 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHH------HHH--hCCC----Cccc-----------
Confidence 77889999999 999999999999999999999999985421 100 0000 0000
Q ss_pred ccccccc--cCcccccc--cchhhhHHHHh-----ccCCceEEEecccccCCCCCCcccccccceeeEEccC
Q 011364 215 IDWSQDF--FEKPAFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (487)
Q Consensus 215 ~~~~~~~--~~~~~~L~--~Spql~l~ll~-----~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~ 277 (487)
..... .+...+|+ ..|+++..+.. ..--|+|+||+|||+|.. +.+|++||+|++++..+.
T Consensus 247 --i~~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs 315 (417)
T PRK09537 247 --LSKQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGS 315 (417)
T ss_pred --chhhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCC
Confidence 00001 12345666 46666553221 112379999999999986 789999999999998754
|
|
| >cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=132.33 Aligned_cols=272 Identities=17% Similarity=0.150 Sum_probs=153.3
Q ss_pred HHHHHHHhhh-----cCCeEEEeCCeeeccCCCCCCCCce-eeecCCCcccccCCCCCCCCCCCCCCccccc-cccCccc
Q 011364 154 LAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFC-VTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFFEKPA 226 (487)
Q Consensus 154 i~~~iR~ff~-----~~gF~EV~TP~L~~~~~eg~~~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 226 (487)
.+..|++||. +.+.+.|..|+++....+ -.+.+. +.. |+ .++. ++-+..+
T Consensus 3 aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sG-lnD~LnG~E~-----------pV-----------~f~~k~~~~~~~ 59 (309)
T cd00645 3 AIKFIKDFFQDNLAKELNLIRVSAPLFVEKGSG-LNDNLNGVEK-----------PV-----------SFKVKALPDATL 59 (309)
T ss_pred hHHHHHHHHHHHHHHHhCeEEecCCeEEecCCC-CccCCCCccc-----------ce-----------EeecCCCCCcee
Confidence 3555666664 479999999999986543 111111 000 00 0000 0112333
Q ss_pred ccccchhhhHHHHh--ccC---CceEEEeccccc-CCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhcc
Q 011364 227 FLTVSGQLNAETYA--TAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 300 (487)
Q Consensus 227 ~L~~Spql~l~ll~--~g~---~kvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~ 300 (487)
-.-+|---|||+.. -+| +.+|+=..+.|. |+. +..|.-==-|-|||.....-+.-++...+.++.++..+...
T Consensus 60 eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~t 138 (309)
T cd00645 60 EVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKET 138 (309)
T ss_pred EEeeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHH
Confidence 34455555666433 245 458888888886 565 78997656666676665433344444455555554444321
Q ss_pred CccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccc-hHHHhhhhhccccCccEEEEe
Q 011364 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPVIVSD 379 (487)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~-~~~e~~l~e~~~~~~p~fi~~ 379 (487)
.. .+. .. ...+...+...+.=+|.+|..+.+- +++ .+.|..++..+ +.|||+.
T Consensus 139 e~-~~~--~~------y~~~~~~Lp~~i~FitsqeL~~~YP--------------~l~~keRE~~i~ke~---gaVFi~~ 192 (309)
T cd00645 139 EL-EVN--EK------YPQLEPILPEEITFITSQELEDRYP--------------DLTPKEREDAICKEH---GAVFIIG 192 (309)
T ss_pred HH-HHH--HH------chhhhhcCCCceEEecHHHHHHHCC--------------CCCHHHHHHHHHHHh---CcEEEEe
Confidence 10 000 00 0011112222222234444333210 122 23455555544 4677776
Q ss_pred cCCcCc---cccccccCCCCceEEEEEEec------CeeeeechhHhhchHHHHHHHHHHcC-CCcccHHHHHHHHhcC-
Q 011364 380 YPKEIK---AFYMRQNDDGRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG- 448 (487)
Q Consensus 380 ~P~~~~---pf~~~~~~~~~~~~~fdl~~~------G~~El~~G~~r~~~~~~~~~~~~~~g-~~~~~~~~yl~~~~~G- 448 (487)
--..++ |--.+.++-+.+..+=|+++- .+ ||.++++|.++ +.+.++++..| .+...+.| ++++..|
T Consensus 193 IG~~L~~g~~Hd~RapDYDDW~LNGDil~w~~~l~~a~-ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~ 269 (309)
T cd00645 193 IGGKLSDGKKHDGRAPDYDDWTLNGDILVWNPVLQRAF-ELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGE 269 (309)
T ss_pred ccCcCCCCCcCCCCCCCCcCccccceEEEEchhcCcee-eecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCC
Confidence 433322 111111111223444555542 57 99999999999 88889999888 56667776 9999999
Q ss_pred CCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 449 SVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 449 ~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
+|||+|.|||+|||+|+|||..+|.+|++=
T Consensus 270 LP~TiGgGIGqsRL~M~LL~k~HIgEVqas 299 (309)
T cd00645 270 LPQTIGGGIGQSRLCMFLLQKAHIGEVQAS 299 (309)
T ss_pred CCccccccccHHHHHHHHhccchhcceeec
Confidence 999999999999999999999999999864
|
AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB. |
| >PRK05425 asparagine synthetase AsnA; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=132.64 Aligned_cols=277 Identities=16% Similarity=0.102 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhhh-----cCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-ccc
Q 011364 149 RVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFF 222 (487)
Q Consensus 149 ~~Rs~i~~~iR~ff~-----~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 222 (487)
+.....++.|+++|. +.+.+.|..|+++....+-.-++--+..+ + .++. +.-
T Consensus 9 ~~tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~p-----------V-----------~F~~k~~~ 66 (327)
T PRK05425 9 IETQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKP-----------V-----------SFKVKDLP 66 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeecc-----------e-----------EeeccCCC
Confidence 333445566666664 47999999999998654221111000000 0 0000 011
Q ss_pred CcccccccchhhhHHHHhc--cC---CceEEEeccccc-CCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHH
Q 011364 223 EKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 296 (487)
Q Consensus 223 ~~~~~L~~Spql~l~ll~~--g~---~kvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~ 296 (487)
+.++-..+|---|||+... +| +.+|+=..+.|. |+. +..|.-==-|-|||.....-+.-++...+.++.+...
T Consensus 67 ~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ 145 (327)
T PRK05425 67 DATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKA 145 (327)
T ss_pred CCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHHHHHH
Confidence 2233344555556665443 55 368888888776 555 7899766667777766543344445555555555554
Q ss_pred hhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccc-hHHHhhhhhccccCccE
Q 011364 297 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPV 375 (487)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~-~~~e~~l~e~~~~~~p~ 375 (487)
+......-...+. .+ +.+...+.=||-+|..+.+- +++ .+.|..++..+ +.|
T Consensus 146 ik~te~~~~~~y~---------~~-~~Lp~~i~FitsqeL~~~YP--------------~l~~keRE~~i~ke~---gaV 198 (327)
T PRK05425 146 IKATEKAVSKKYP---------LL-PFLPEEITFITSQELEDRYP--------------DLTPKEREDAIAKEY---GAV 198 (327)
T ss_pred HHHHHHHHHHhCc---------cc-ccCCCceEEecHHHHHHHCC--------------CCCHHHHHHHHHHHh---CcE
Confidence 4322100000000 00 11111112234444332210 122 23455555544 467
Q ss_pred EEEecCCcCc---cccccccCCCCceEEEEEEec------CeeeeechhHhhchHHHHHHHHHHcC-CCcccHHHHHHHH
Q 011364 376 IVSDYPKEIK---AFYMRQNDDGRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLR 445 (487)
Q Consensus 376 fi~~~P~~~~---pf~~~~~~~~~~~~~fdl~~~------G~~El~~G~~r~~~~~~~~~~~~~~g-~~~~~~~~yl~~~ 445 (487)
||+.--..++ |--.+.++-+.+..+=|+++- .+ ||.++++|.+ ++.+.++++..| .+...+.||+++
T Consensus 199 Fi~~IG~~L~~g~~Hd~RapDYDDW~LNGDilvw~~~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l- 275 (327)
T PRK05425 199 FLIGIGGKLSDGKPHDGRAPDYDDWGLNGDILVWNPVLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL- 275 (327)
T ss_pred EEEeccCcCCCCCcCCCCCCCCcCcccCceEEEEccccCcee-eecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-
Confidence 7776433322 111111111223344555442 57 9999999998 999999999988 577788999999
Q ss_pred hcC-CCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 446 HYG-SVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 446 ~~G-~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
..| +|||+|.|||+|||+|+|||.++|.+|++=
T Consensus 276 l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~s 309 (327)
T PRK05425 276 LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQAS 309 (327)
T ss_pred HhCCCCCcccccccHHHHHHHHhccchhcccccc
Confidence 777 999999999999999999999999999863
|
|
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=145.20 Aligned_cols=104 Identities=23% Similarity=0.346 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc--cCcc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF--FEKP 225 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 225 (487)
..-.+.+.+.+|++|...||.||.||+|+...- -+.+...... + ...+. ++..
T Consensus 239 ~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~---~E~m~~~~g~-----------e-----------I~n~Iyk~ee~ 293 (453)
T TIGR02367 239 EDYLGKLERDITKFFVDRGFLEIKSPILIPAEY---IERMGIDNDT-----------E-----------LSKQIFRVDKN 293 (453)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEECCeecchHH---HHhhcCccCC-----------c-----------ccccceEecCc
Confidence 344688999999999999999999999983211 0001000000 0 00000 1223
Q ss_pred cccc--cchhhhHHHHh-----ccCCceEEEecccccCCCCCCcccccccceeeEEccC
Q 011364 226 AFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (487)
Q Consensus 226 ~~L~--~Spql~l~ll~-----~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~ 277 (487)
.+|+ ..|+|+..+.. ..-.|+|+||+|||+|.. +.+|+.||+|++++.+..
T Consensus 294 lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~ 351 (453)
T TIGR02367 294 FCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGS 351 (453)
T ss_pred eEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECC
Confidence 4566 66777643321 123499999999999987 789999999999998753
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >PTZ00213 asparagine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-13 Score=131.67 Aligned_cols=68 Identities=24% Similarity=0.182 Sum_probs=62.2
Q ss_pred eeeechhHhhchHHHHHHHHHHcC-CCcccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 409 GELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 409 ~El~~G~~r~~~~~~~~~~~~~~g-~~~~~~~~yl~~~~~G-~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
.||.++++|. +++.+.++++..| .+...+.||++ +..| +|+|+|.|||+|||+|+|||..+|.+|++=
T Consensus 266 ~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~s 335 (348)
T PTZ00213 266 LELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQCS 335 (348)
T ss_pred eecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceeee
Confidence 5999999999 9999999999998 57778899999 6667 999999999999999999999999999763
|
|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-13 Score=137.81 Aligned_cols=102 Identities=19% Similarity=0.311 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhcC---CeEEEe--CCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccc
Q 011364 153 ALAYATHKFFQEN---GFIWIS--SPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (487)
Q Consensus 153 ~i~~~iR~ff~~~---gF~EV~--TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (487)
.+.+.|+++|.+. ||.+++ .|+.+...+ | ..++.+++|++++ ..++=|.+...-
T Consensus 72 ~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~N------F--D~L~~P~dHPaR~-------------~~DTfy~~~~~l 130 (402)
T PLN02788 72 ILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQN------F--DDVLVPPDHVSRS-------------YNDTYYVDAQTV 130 (402)
T ss_pred HHHHHHHHHHhhcccCCcEEecCCCCccchhhh------h--hhhCCCCCCCccC-------------ccceEEecCCcc
Confidence 3677788899887 999998 566554322 2 3344433443332 122333455566
Q ss_pred cccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEcc
Q 011364 228 LTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (487)
Q Consensus 228 L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (487)
|++..--+. ++|..+-.|++.+|+|||+|.+ +.+|.|+|+|+|.-+.+
T Consensus 131 LRTHTSa~q~~~l~~~~~~~~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 131 LRCHTSAHQAELLRAGHTHFLVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred ccCCCcHHHHHHHHhCCCcEEEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 776666665 6776777899999999999999 79999999999987765
|
|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-13 Score=129.43 Aligned_cols=101 Identities=23% Similarity=0.317 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCCCCce-eeecCCCcccccCCCCCCCCCCCCCCccccccccCccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFC-VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFL 228 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 228 (487)
|+.+.+.+|++|.+.||.||.||.+++... +..+.... +...+ +.-+...+|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~L 55 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVG--------------------------AENEEDLYL 55 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeee--------------------------cCCCCEEEE
Confidence 678999999999999999999999988522 11110000 00001 112455689
Q ss_pred ccchhhhH-HHHhc----cCCceEEEecccccCCCCCC--cccccccceeeEEccCC
Q 011364 229 TVSGQLNA-ETYAT----ALSNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFAD 278 (487)
Q Consensus 229 ~~Spql~l-~ll~~----g~~kvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~ 278 (487)
++|....+ ++++. .--|+||||+|||+|.. +. +|+.||+|+++++.+.+
T Consensus 56 R~s~~~~l~~~~~~n~~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 56 RPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred CCCCcHHHHHHHHhhcccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCC
Confidence 99999998 66554 34589999999999975 44 78899999999998743
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >TIGR00669 asnA aspartate--ammonia ligase, AsnA-type | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=120.87 Aligned_cols=278 Identities=15% Similarity=0.119 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHhhh-----cCCeEEEeCCeeeccCCCCCCCCce-eeecCCCcccccCCCCCCCCCCCCCCcccccc-
Q 011364 148 ARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFC-VTTLIPSSREAAESPVDAIPKTKDGLIDWSQD- 220 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~-----~~gF~EV~TP~L~~~~~eg~~~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (487)
++.-...+..|++||. +.+.++|..|+++....+ -.+.+. +..+ + .++..
T Consensus 5 ~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sG-lnD~LnG~Erp-----------V-----------~f~~k~ 61 (330)
T TIGR00669 5 FILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDG-TQDNLSGREKA-----------V-----------QVKVKA 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCC-CcCCCCCeecc-----------e-----------EeecCC
Confidence 4455566777777775 468999999999986542 211111 1000 0 00000
Q ss_pred ccCcccccccchhhhHHHHhc--cC---CceEEEeccccc-CCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHH
Q 011364 221 FFEKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 294 (487)
Q Consensus 221 ~~~~~~~L~~Spql~l~ll~~--g~---~kvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~ 294 (487)
.-+..+-.-+|---|||+... +| +.+|+=..+-|. |+.-+..|.-==-|-|||.....-+.-++...+.++.+.
T Consensus 62 ~~~~~~evVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy 141 (330)
T TIGR00669 62 IPDAQFEVVHSLAKWKRHTLARHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIY 141 (330)
T ss_pred CCCceeEEehhhHHHHHHHHHhcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHH
Confidence 112333344555556675443 55 468997888886 552378897555566666654433333444444444444
Q ss_pred HHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccc-hHHHhhhhhccccCc
Q 011364 295 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGC 373 (487)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~-~~~e~~l~e~~~~~~ 373 (487)
+.+..... .+. .. + .+...+...+.=+|-+|..+.+- +++ .+.|..++..+ +
T Consensus 142 ~~ik~te~-~~~--~~-----y--~l~~~Lp~~I~FitsqeL~~~YP--------------~lt~keRE~~i~ke~---g 194 (330)
T TIGR00669 142 AAIRATEA-AVS--ER-----F--GLAPFLPDQIHFVHSEELVSRYP--------------DLDSKGRERAICKEL---G 194 (330)
T ss_pred HHHHHHHH-HHH--Hh-----c--CccccCCCceEEecHHHHHHHCC--------------CCCHHHHHHHHHHHh---C
Confidence 44432110 000 00 0 01111111111233333332210 122 23444555544 3
Q ss_pred cEEEEecCCcCc---cccccccC---------CCCceEEEEEEec------CeeeeechhHhhchHHHHHHHHHHcC-CC
Q 011364 374 PVIVSDYPKEIK---AFYMRQND---------DGRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LN 434 (487)
Q Consensus 374 p~fi~~~P~~~~---pf~~~~~~---------~~~~~~~fdl~~~------G~~El~~G~~r~~~~~~~~~~~~~~g-~~ 434 (487)
.|||+.--..++ |--.+.++ ++....+=|+++- .+ ||.+-+.|. +.+.+.++++..| .+
T Consensus 195 aVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g~~d 272 (330)
T TIGR00669 195 AVFLIGIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTGDED 272 (330)
T ss_pred cEEEEeccCcCCCCCcCCCCCCCcccccccccccccCcCceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcCCCc
Confidence 567665333221 11001001 1111134455442 46 999999998 6677778888888 67
Q ss_pred cccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 435 RDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 435 ~~~~~~yl~~~~~G-~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
...+.||+++ ..| +|||+|.|||+|||+|+|||..+|.+|++=
T Consensus 273 r~~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgEVQ~s 316 (330)
T TIGR00669 273 RLELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQAS 316 (330)
T ss_pred cccCHHHHHH-HcCCCCccccccccHHHHHHHHhccccccceeee
Confidence 7889999999 667 999999999999999999999999999763
|
The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=131.64 Aligned_cols=219 Identities=17% Similarity=0.235 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCC---CC---------CCCCCCCC-
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAES---PV---------DAIPKTKD- 212 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~~---------~~~~~~~~- 212 (487)
.-...+..+++.+|+.|...||.||+||.+.++- ...-.+|.+++|.++..++... |- +++...|+
T Consensus 230 ~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~-~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~ 308 (489)
T PRK04172 230 GKKHPYREFIDEVRDILVEMGFEEMKGPLVETEF-WNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEH 308 (489)
T ss_pred CCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecC-cccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhc
Confidence 3445677899999999999999999999998742 1222344444444433322110 00 01111111
Q ss_pred CCcccccccc--------CcccccccchhhhH-HHHh-ccC--CceEEEecccccCCCCCCcccccccceeeEEccC--C
Q 011364 213 GLIDWSQDFF--------EKPAFLTVSGQLNA-ETYA-TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--D 278 (487)
Q Consensus 213 ~~~~~~~~~~--------~~~~~L~~Spql~l-~ll~-~g~--~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~ 278 (487)
|... ....| ++..-|+.+.--.. ++++ .+. -|+|+||+|||+|.. +..|++||+|+++...+. +
T Consensus 309 g~~~-~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~~~~ 386 (489)
T PRK04172 309 GGDT-GSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGEDVS 386 (489)
T ss_pred cCCC-CCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEEEEeCCCC
Confidence 1000 00111 22334544443333 4444 232 389999999999987 578899999999998764 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccc
Q 011364 279 LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ 358 (487)
Q Consensus 279 ~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~ 358 (487)
+.+++.++++++..+ |+.
T Consensus 387 f~elkg~l~~ll~~l--------------------------------------------------Gi~------------ 404 (489)
T PRK04172 387 FRDLLGILKEFYKRL--------------------------------------------------GFE------------ 404 (489)
T ss_pred HHHHHHHHHHHHHHh--------------------------------------------------CCc------------
Confidence 334433333333221 000
Q ss_pred hHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecC---eeeeechhHhhchHHHHHHHHHHcCCCc
Q 011364 359 SEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNR 435 (487)
Q Consensus 359 ~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G---~~El~~G~~r~~~~~~~~~~~~~~g~~~ 435 (487)
...| -| ...||+.+ ....+++++| . ||++.++-. .+.++..|++.
T Consensus 405 --------------~~~~---~~-~~~p~~~P-------~~~~~i~~~g~~w~-eiG~~G~l~------Pevl~~~gi~~ 452 (489)
T PRK04172 405 --------------EVKF---RP-AYFPFTEP-------SVEVEVYHEGLGWV-ELGGAGIFR------PEVLEPLGIDV 452 (489)
T ss_pred --------------eEEE---cC-CcCCCCCC-------eEEEEEEECCCCeE-EEEeccccC------HHHHHHCCCCC
Confidence 0000 01 11144422 3456888877 4 888877766 34555556542
Q ss_pred ccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011364 436 DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476 (487)
Q Consensus 436 ~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~ 476 (487)
|...|+||+|||+|+.+|++||||..
T Consensus 453 ---------------~v~~~el~le~l~m~~~~~~dir~l~ 478 (489)
T PRK04172 453 ---------------PVLAWGLGIERLAMLRLGLDDIRDLY 478 (489)
T ss_pred ---------------ceEEEEEcHHHHHHHHhCCcHHHHHH
Confidence 56789999999999999999999864
|
|
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=99.35 E-value=7e-12 Score=129.64 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=52.0
Q ss_pred cCccccccccCCCCceEEEEEEecC-eeeeechhHhhchHHHHHHHHHHcCCCcccH-HHHHHHHhcCCCCccceeccHH
Q 011364 383 EIKAFYMRQNDDGRTVAAMDMLVPR-IGELIGGSQREERLEYLEGRLDELKLNRDSY-WWYLDLRHYGSVPHAGFGLGFE 460 (487)
Q Consensus 383 ~~~pf~~~~~~~~~~~~~fdl~~~G-~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~-~~yl~~~~~G~pP~~G~giGid 460 (487)
..-||+.+ +...|+.++| +-||+|+++-. .+.++..|++++.+ +| .||||+|
T Consensus 270 s~fPfteP-------s~evdi~~~g~WiEi~gcG~v~------p~vl~~~g~~~~~~~g~-------------AfGiGle 323 (460)
T TIGR00469 270 AYFPFTAP-------SWEIEIWFKDEWLELCGCGIIR------HDILLRAGVHPSETIGW-------------AFGLGLD 323 (460)
T ss_pred ccCCCCCc-------ceEEEEEECCeeEEEeeeccCc------HHHHHHcCCCccceEEE-------------EEEecHH
Confidence 44577754 4668888888 23999999887 67788888886532 22 5899999
Q ss_pred HHHHHHcCCCCcccc
Q 011364 461 RLVQFATGVENIRDA 475 (487)
Q Consensus 461 RL~m~l~g~~~Irdv 475 (487)
||+|++.|+++||..
T Consensus 324 RlaMl~~gi~DiR~~ 338 (460)
T TIGR00469 324 RIAMLLFDIPDIRLF 338 (460)
T ss_pred HHHHHHcCccHHHHH
Confidence 999999999999964
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-11 Score=117.84 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccC-CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASD-CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~-~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
..+.+.+|++|...||.|+.||.+.+.. + | ...+.+.+|++... .+.-+......|++
T Consensus 75 ~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~------f--d~l~~~~~hpar~~-------------~d~~~l~d~~vLRt 133 (294)
T TIGR00468 75 TRVIDEIRDIFLGLGFTEEKGPEVETDFWN------F--DALNIPQDHPARDM-------------QDTFYIKDRLLLRT 133 (294)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceeccHHH------H--HHhCCCCCCcchhh-------------ccceeecCCcceec
Confidence 3577789999999999999999998751 1 1 11111111111100 00001112234555
Q ss_pred chhhhH-HHHhccC---CceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHH
Q 011364 231 SGQLNA-ETYATAL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYL 290 (487)
Q Consensus 231 Spql~l-~ll~~g~---~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li 290 (487)
|----+ +.+.... -|+|+||+|||++.. +.+|+|||+||+.-+.. .|+.++...+|.++
T Consensus 134 sl~p~ll~~l~~N~~~pirlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll 198 (294)
T TIGR00468 134 HTTAVQLRTMEENEKPPIRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFL 198 (294)
T ss_pred ccHHHHHHHHHhcCCCCceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHH
Confidence 544443 5555554 489999999999876 57999999999987543 24555555444444
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=100.21 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC-------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 011364 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCE-------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e-------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (487)
.+.|..+.+.+++.|.+.||.||.||++...+.- ...+.|.+.+.+
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~--------------------------- 54 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKG--------------------------- 54 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCC---------------------------
Confidence 3578899999999999999999999999986431 122344432211
Q ss_pred ccCcccccccchhhhH-HHHhc------cCCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 221 FFEKPAFLTVSGQLNA-ETYAT------ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 221 ~~~~~~~L~~Spql~l-~ll~~------g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
|+.+.|+.-..... ++++. .--|+|++++|||+|.. ...|.-||+|+++|.-..+
T Consensus 55 --g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 55 --GRDLALRPDLTAPVARAVAENLLSLPLPLKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred --CCEEEeCCCCcHHHHHHHHhcCccCCCCeEEEEEcCEEecCCC-CCCCccceEEeceeeeCCC
Confidence 23333332222222 33332 22389999999999987 4678899999999987653
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=110.29 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=40.4
Q ss_pred CceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHHH
Q 011364 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (487)
Q Consensus 244 ~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~ 293 (487)
-|+|+||+|||+|...+.+|+++|+|+|.-.+.. ++.|++..++.|++++
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4899999999999643679999999999877754 5777777777776665
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=97.51 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=75.0
Q ss_pred HHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc--cccccc
Q 011364 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK--PAFLTV 230 (487)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~ 230 (487)
++.+.+|++|...||.||.|+.+++.... .+.+......+ ...+ + +.-.... -.+|++
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~--~~~~~~~~~~~---------~~~~-----~----~~v~l~NP~~~~LR~ 64 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYN--FDALNIPQDHP---------ARDM-----Q----DTFYINDPARLLLRT 64 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchh--hhhcCCCCCCc---------cccc-----C----ceEEECCCceEEEec
Confidence 46678999999999999999999876211 01111100000 0000 0 0000011 134555
Q ss_pred chhhhH-HHHhc--cCCceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHH
Q 011364 231 SGQLNA-ETYAT--ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 292 (487)
Q Consensus 231 Spql~l-~ll~~--g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (487)
|-=--+ +.++. .--|+||||+|||+++. +..|+|||+||++..++. |+.+++..+|.++..
T Consensus 65 sLlp~LL~~l~~N~~~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~ 130 (218)
T cd00496 65 HTSAVQARALAKLKPPIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKE 130 (218)
T ss_pred cCcHHHHHHHHhcCCCeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 544333 55554 45699999999999876 568899999999999986 777887777777753
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=80.55 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=61.0
Q ss_pred EEEEEEEeee-ecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 011364 32 IVVAGWVRTL-RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 32 V~v~GwV~~i-R~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~ 110 (487)
|+|+|||.++ |..+++.|+.|+|++| ++||++.... ....... |+.|++|.|+|++...+.+ +++|.+++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg--~i~~~~~~~~-~~~~~~~--l~~g~~v~v~G~v~~~~~~--~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTG--SIQVVFFNEE-YERFREK--LKEGDIVRVRGKVKRYNGG--ELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETHH-HHHHHHT--S-TTSEEEEEEEEEEETTS--SEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCc--cEEEEEccHH-hhHHhhc--CCCCeEEEEEEEEEEECCc--cEEEEECEEE
Confidence 7899999999 7779999999999995 6999999721 1222455 9999999999999998654 5999999998
Q ss_pred EE
Q 011364 111 LV 112 (487)
Q Consensus 111 vl 112 (487)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-07 Score=97.40 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CC----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
-.-.+.+..+.+.+++.|.++||.||.||++...+. +. ..+.|.+.+.+
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~--------------------- 69 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKG--------------------- 69 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCC---------------------
Confidence 345778889999999999999999999999977431 00 01233332211
Q ss_pred ccccccccCcccccccc--hhhhHHHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 215 IDWSQDFFEKPAFLTVS--GQLNAETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~S--pql~l~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
|+.+.|+.- +++. ++++.. --|+|++++|||+|.. ...|.-||+|+++|....+
T Consensus 70 --------g~~l~LRpD~T~~ia-R~~~~~~~~~~~p~r~~y~g~vfR~e~~-~~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 70 --------GRSLTLRPEGTAPVA-RAVIENKLLLPKPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred --------CCEEeecCCCcHHHH-HHHHhcccccCCCeEEEEEcCeecCCCC-CCCcccceEEcCeeeeCCC
Confidence 233333222 2222 333321 1489999999999987 4456699999999987654
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.6e-09 Score=102.21 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCC---C----------CCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAES---P----------VDAIPKT 210 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~---~----------~~~~~~~ 210 (487)
+.-.+++|+ .+|++|-+.||.|+.|.-.+.+.-...-.+|+++.|.++..|+... | ++.++.+
T Consensus 211 lHPLmKvR~----eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~v 286 (483)
T KOG2784|consen 211 LHPLMKVRE----EFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAV 286 (483)
T ss_pred cchHHHHHH----HHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHH
Confidence 445677665 5799999999999999999988777766777766666666555322 2 2223334
Q ss_pred CC-CCccccccccCccccc-------------ccchhhhHHHHhccC--CceEEEecccccCCCCCCcccccccceeeEE
Q 011364 211 KD-GLIDWSQDFFEKPAFL-------------TVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPEL 274 (487)
Q Consensus 211 ~~-~~~~~~~~~~~~~~~L-------------~~Spql~l~ll~~g~--~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~ 274 (487)
|+ |++. +.-|+.+|-| ++|....-+|.-.|| .|+|.|.+|||||.. +.+||.||.|+|.-.
T Consensus 287 H~~G~yg--s~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtv-DaTHLAEFHQVEGvi 363 (483)
T KOG2784|consen 287 HEQGGYG--SIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETV-DATHLAEFHQVEGVI 363 (483)
T ss_pred HhcCCcC--CcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhcccc-chHHHHHHhhhceee
Confidence 43 2222 1223333322 233333224445555 489999999999999 699999999999888
Q ss_pred ccC--CHHHHHHHHHHHHHHH
Q 011364 275 AFA--DLKDDMACATAYLQYV 293 (487)
Q Consensus 275 ~~~--~~~~lm~~~e~li~~~ 293 (487)
+.. ++.++|...++++..+
T Consensus 364 ad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 364 ADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred ecCCCcHHHHHHHHHHHHhcc
Confidence 865 5889998888776543
|
|
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-07 Score=83.68 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhh-cCCeEEEeCCeeeccCCC-CC-------CCCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 011364 150 VRNALAYATHKFFQ-ENGFIWISSPIITASDCE-GA-------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~-~~gF~EV~TP~L~~~~~e-g~-------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (487)
++.+|.+.+++.+. +.||.||.||+|.+...- .. .+.|.++..+
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~--------------------------- 53 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRG--------------------------- 53 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETT---------------------------
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecc---------------------------
Confidence 47889999999999 999999999999985431 11 1223221110
Q ss_pred ccCcccccccchhhhH-HHHhc-------cCC-ceEEEecccccCC--CCCCcccccccceeeEEccCCHHHHHHHHHHH
Q 011364 221 FFEKPAFLTVSGQLNA-ETYAT-------ALS-NVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAY 289 (487)
Q Consensus 221 ~~~~~~~L~~Spql~l-~ll~~-------g~~-kvfeI~~~FR~E~--~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~l 289 (487)
+...+|+.+.+... .++.. .+. |+|++|+|||+|. ..+-..+-||+|.|++....+ ++..+..+++
T Consensus 54 --~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~ 130 (173)
T PF00587_consen 54 --DEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEEL 130 (173)
T ss_dssp --TEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHH
T ss_pred --cccEEeccccccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHH
Confidence 13346666665554 33221 122 7999999999993 224567789999999987777 7777777777
Q ss_pred HHHHHHH
Q 011364 290 LQYVVRY 296 (487)
Q Consensus 290 i~~~~~~ 296 (487)
+..+..-
T Consensus 131 ~~~~~~i 137 (173)
T PF00587_consen 131 LELYKEI 137 (173)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-06 Score=87.04 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=107.5
Q ss_pred ccc-CcccccccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHh
Q 011364 220 DFF-EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 297 (487)
Q Consensus 220 ~~~-~~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~ 297 (487)
.|| +....|+...-.|. +++..|.+.--..|-|||...+ +++|.|=|.|+|.-.-+.- +++ +...
T Consensus 126 tyy~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdei-dsthypvfhq~eg~~~~s~-~~l-----------~~~~ 192 (436)
T KOG2783|consen 126 TYYVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEI-DSTHYPVFHQMEGVRLWSK-DEL-----------FGKK 192 (436)
T ss_pred ceeecceeeehhcchhhHHHHHHhcccccceeeeeeeeccc-cccccceeccccceeEEec-chh-----------hccc
Confidence 344 55666777777776 7888899999999999999999 6899999999998776542 110 0000
Q ss_pred hccCccccccc-cccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhcccc--Ccc
Q 011364 298 LDNCKEDMDFF-NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFG--GCP 374 (487)
Q Consensus 298 ~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~--~~p 374 (487)
. +.+.. ..|...+ . +.....+......||.+++..+-.. ..+. |....++ -.-
T Consensus 193 ~-----d~~~ve~~~~~s~----~-~~~~~~kq~~~t~e~~~~~~~~lk~-------------~l~~-L~~~Lf~~~~~~ 248 (436)
T KOG2783|consen 193 P-----DGKNVAELFSGSS----A-TLRSPNKQEKHTLEATKLAEQHLKQ-------------TLEG-LCDELFGKEVEY 248 (436)
T ss_pred c-----cccceeccccccc----c-ccccccccccchHHHHHHHHHHHHH-------------HHHH-HHHHhccchhhe
Confidence 0 11100 0000000 0 0011112223345666665432110 0000 0000110 011
Q ss_pred EEEEecCCcCccccccccCCCCceEEEEEEecC-eeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCcc
Q 011364 375 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHA 453 (487)
Q Consensus 375 ~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G-~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~ 453 (487)
=||..|= ||+.+ +...|+++.| +-|+.|++.-+ ...++..|+. +...|
T Consensus 249 rwV~~yf----pft~p-------s~eleI~~~~~wlevlgcgvi~------~~il~~ag~~-~~igw------------- 297 (436)
T KOG2783|consen 249 RWVDAYF----PFTHP-------SWELEIYFKGEWLEVLGCGVMR------QRLLKRAGLN-NYIGW------------- 297 (436)
T ss_pred eheeeEc----ccCCC-------CeEEEEEecCCcHhhhccchhH------HHHHhhcccc-ceeee-------------
Confidence 1333221 56543 3456777777 23999998777 5566777775 44456
Q ss_pred ceeccHHHHHHHHcCCCCccc
Q 011364 454 GFGLGFERLVQFATGVENIRD 474 (487)
Q Consensus 454 G~giGidRL~m~l~g~~~Ird 474 (487)
.||||+|||.|+|.++++||-
T Consensus 298 afglgLerLAMll~~IpDiRl 318 (436)
T KOG2783|consen 298 AFGLGLERLAMLLFDIPDIRL 318 (436)
T ss_pred eeeccHHHHHHHHhcCcchhe
Confidence 689999999999999999994
|
|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-06 Score=84.16 Aligned_cols=122 Identities=19% Similarity=0.133 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-C---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.+++.+|.+.+++.+.+.||.||.||.|.+.+. . | ..+.|.+++...
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~----------------------- 87 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGL----------------------- 87 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCC-----------------------
Confidence 5678889999999999999999999999988542 1 1 113444432110
Q ss_pred cccccCcccccccchhhhH-HHH----hcc--CC-ceEEEecccccCCCCC--CcccccccceeeEEccCCHHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETY----ATA--LS-NVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACAT 287 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll----~~g--~~-kvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (487)
.=-+.+++|....+..+ .+. .+. +. |+|+|++|||+|...+ --=.-||+|.|.+..+++.++..+..+
T Consensus 88 --~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~ 165 (261)
T cd00778 88 --EELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVL 165 (261)
T ss_pred --cccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHH
Confidence 00012345555544443 222 111 22 7899999999997621 112349999999999999998888888
Q ss_pred HHHHHH
Q 011364 288 AYLQYV 293 (487)
Q Consensus 288 ~li~~~ 293 (487)
+++...
T Consensus 166 ~~~~~~ 171 (261)
T cd00778 166 QILDLY 171 (261)
T ss_pred HHHHHH
Confidence 876554
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=82.76 Aligned_cols=117 Identities=23% Similarity=0.324 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCC----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
-.-...+..|...+|+-+.+.||.||.||++-...- |.. -+.+..++..
T Consensus 15 p~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkg--------------------- 73 (429)
T COG0124 15 PEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKG--------------------- 73 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCC---------------------
Confidence 345778889999999999999999999999887432 110 0111111110
Q ss_pred ccccccccCcccccccchhhh--H-HHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC----HHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKD 281 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~--l-~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~ 281 (487)
++.+.|+ |++= . |+++.. --|.|.++||||.|.....|- =||+|+++|.-..+ --|
T Consensus 74 --------gr~laLR--pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAE 142 (429)
T COG0124 74 --------GRSLALR--PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAE 142 (429)
T ss_pred --------CCEEEec--ccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHH
Confidence 2333332 3322 2 444422 238999999999998866665 69999999998764 236
Q ss_pred HHHHHHHHHHHH
Q 011364 282 DMACATAYLQYV 293 (487)
Q Consensus 282 lm~~~e~li~~~ 293 (487)
++.++-+++..+
T Consensus 143 vi~l~~~~l~~l 154 (429)
T COG0124 143 VIALAVEILEAL 154 (429)
T ss_pred HHHHHHHHHHHc
Confidence 777777766655
|
|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.1e-06 Score=78.55 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 011364 149 RVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (487)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (487)
+++.+|.+.+++.|.+.||.||.||.|..... .+.. +.|.+++.+. .
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~ 57 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGR-------------------------E 57 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcc-------------------------c
Confidence 56788999999999999999999999998642 1101 1222211000 0
Q ss_pred ccCcccccccchhhhH-HHHhc------cC-CceEEEecccccCCCCC--CcccccccceeeEEccCC
Q 011364 221 FFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 221 ~~~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~ 278 (487)
--+..++|+....... ++.+. .+ -|+|++++|||+|.... -.-.-||+|.|++.-..+
T Consensus 58 ~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 58 LRDTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred ccCCeEEEecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 0012334444443333 33322 12 27999999999997631 223469999999986544
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.2e-05 Score=75.00 Aligned_cols=121 Identities=20% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCC--------CCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA--------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~--------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.+++.+|.+.+++-+.+.||.||.||.|..... .+. .+.|.+++... +
T Consensus 31 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~-------------------~--- 88 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGD-------------------E--- 88 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCC-------------------C---
Confidence 4567888999999999999999999999988542 111 12233321110 0
Q ss_pred cccccCcccccccchhhhH-HHHhc------cCC-ceEEEecccccCCCCCCc---ccccccceeeEEccCCHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll~~------g~~-kvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
+ -+.+++|+...+... .+... .+. |+|++++|||+|.. +.+ =.-||+|.|.+....+.++..+..
T Consensus 89 --~-~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~ 164 (264)
T cd00772 89 --E-LEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHADAEEADEEF 164 (264)
T ss_pred --c-cCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCCHHHHHHHH
Confidence 0 013445655555433 22221 233 89999999999953 222 235999999998768888888777
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
+.++...
T Consensus 165 ~~~~~~~ 171 (264)
T cd00772 165 LNMLSAY 171 (264)
T ss_pred HHHHHHH
Confidence 7777543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.6e-05 Score=76.78 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
-.+++.+|.+.+++.|.+.||.||.||+|..... . | ..+.|.+++..
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~------------------------- 84 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRH------------------------- 84 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCC-------------------------
Confidence 5677889999999999999999999999988432 0 1 11233332110
Q ss_pred ccccCcccccccchhhhH-----HHHhc--cCC-ceEEEecccccCCCCCCc---ccccccceeeEEccCCHHHHHHHHH
Q 011364 219 QDFFEKPAFLTVSGQLNA-----ETYAT--ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACAT 287 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~l-----~ll~~--g~~-kvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~~e 287 (487)
+.+++|+...+-.+ +.+.+ .+. |+|++++|||+|.. +.+ =.-||+|.|.+....+-.+..+..+
T Consensus 85 ----~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~-~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~ 159 (255)
T cd00779 85 ----GKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIR-PRFGLMRGREFLMKDAYSFDIDEESLEETYE 159 (255)
T ss_pred ----CCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCC-CCCceeeeeeEeHhhheeccCCHHHHHHHHH
Confidence 23445655433322 22222 233 89999999999932 111 2359999999998777666666555
Q ss_pred HHHHH
Q 011364 288 AYLQY 292 (487)
Q Consensus 288 ~li~~ 292 (487)
+++..
T Consensus 160 ~i~~~ 164 (255)
T cd00779 160 KMYQA 164 (255)
T ss_pred HHHHH
Confidence 55543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.1e-05 Score=81.48 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CC----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
..-.+.+..+...+|+.|.+.||.||.||++...+- +. ..+.|.+.+..
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~--------------------- 73 (412)
T PRK00037 15 PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKG--------------------- 73 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCC---------------------
Confidence 446777888999999999999999999999976431 11 12233332110
Q ss_pred ccccccccCccccccc--chhhhHHHHhc---cCCceEEEecccccCCCCCCcccccccceeeEEccCCH----HHHHHH
Q 011364 215 IDWSQDFFEKPAFLTV--SGQLNAETYAT---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL----KDDMAC 285 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~--Spql~l~ll~~---g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~----~~lm~~ 285 (487)
|+.+.|+. .+++. +.++. .--|+|++++|||+|.. ...|.-||+|+++|.-..+- .|++.+
T Consensus 74 --------g~~l~LRpd~T~~~a-r~~~~~~~~p~r~~~~g~vfR~e~~-~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~ 143 (412)
T PRK00037 74 --------GRSLTLRPEGTAPVV-RAVIEHKLQPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIGSDSPLADAEVIAL 143 (412)
T ss_pred --------CCEEEecCCCcHHHH-HHHHhCCCCCeEEEEEcCccccCCC-CCCcccceEEcCeeeeCCCCcchhHHHHHH
Confidence 22222322 22222 33322 23489999999999987 45677999999999865542 345555
Q ss_pred HHHHHH
Q 011364 286 ATAYLQ 291 (487)
Q Consensus 286 ~e~li~ 291 (487)
+.+++.
T Consensus 144 ~~~~l~ 149 (412)
T PRK00037 144 AADILK 149 (412)
T ss_pred HHHHHH
Confidence 444443
|
|
| >COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00078 Score=64.27 Aligned_cols=69 Identities=20% Similarity=0.134 Sum_probs=53.0
Q ss_pred CeeeeechhHhhchHHHHHHHHHHcCC-CcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccc
Q 011364 407 RIGELIGGSQREERLEYLEGRLDELKL-NRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 477 (487)
Q Consensus 407 G~~El~~G~~r~~~~~~~~~~~~~~g~-~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~ 477 (487)
++ ||.+-+.|. +.+.+.++++-.|. |...++|-=..+.--+|-+-|-|||=.||+|+|+..++|-+|..
T Consensus 246 af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 246 AF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred hh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCcccHHHHHHHHhcccccceeee
Confidence 56 888888887 55666666665553 23345776666666689999999999999999999999999964
|
|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.9e-05 Score=82.94 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC--------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE--------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e--------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-.-.+++.+|.+.+|+.|.+.||.||.||+|.+..-. -+.+.|.+++..
T Consensus 44 P~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~----------------------- 100 (568)
T TIGR00409 44 PLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRK----------------------- 100 (568)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCC-----------------------
Confidence 3467788999999999999999999999999984321 112345443211
Q ss_pred ccccccCcccccccchh-----hhHHHHhcc--CC-ceEEEecccccCC-CCCC-cccccccceeeEEccCCHHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQ-----LNAETYATA--LS-NVYTFGPTFRAEN-SNTS-RHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spq-----l~l~ll~~g--~~-kvfeI~~~FR~E~-~~t~-rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
+.+++|+...| ++.+.+.+. +. |+|||++|||+|. .... -=.-||+|.|.|.-..+..+.....
T Consensus 101 ------~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~ 174 (568)
T TIGR00409 101 ------GREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATY 174 (568)
T ss_pred ------CCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHH
Confidence 23445554322 222222222 33 8999999999993 2111 0235999999999877766665556
Q ss_pred HHHH---HHHHHHh
Q 011364 287 TAYL---QYVVRYI 297 (487)
Q Consensus 287 e~li---~~~~~~~ 297 (487)
+.++ ..+++.+
T Consensus 175 ~~~~~~y~~if~~L 188 (568)
T TIGR00409 175 QKMYQAYSNIFSRL 188 (568)
T ss_pred HHHHHHHHHHHHHh
Confidence 6554 5555554
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.1e-05 Score=77.28 Aligned_cols=97 Identities=25% Similarity=0.233 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhhcCC--eEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 147 VARVRNALAYATHKFFQENG--FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~g--F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
-.+++.+|.+.+|+.|...| |.||+||+|.+. +.|.+. ..+. +--+.
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~-~g~~------------------------d~~~~ 79 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTS-IGPV------------------------ESGGN 79 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheee-eccc------------------------CCCCc
Confidence 56788999999999998885 999999999996 456542 1100 00012
Q ss_pred cccccc--chh---hhHHHHhcc---CC-ceEEEecccccCCCCCC---cccccccceeeEEc
Q 011364 225 PAFLTV--SGQ---LNAETYATA---LS-NVYTFGPTFRAENSNTS---RHLAEFWMIEPELA 275 (487)
Q Consensus 225 ~~~L~~--Spq---l~l~ll~~g---~~-kvfeI~~~FR~E~~~t~---rHl~EFtmlE~e~~ 275 (487)
..+|+. .|. .+++..... +. |+||||+|||+|.+ .. -=.-||||.|+|.-
T Consensus 80 ~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~-~~~gl~R~ReF~q~d~~~f 141 (254)
T cd00774 80 LGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEIS-PRNGLFRVREFTQAEIEFF 141 (254)
T ss_pred ccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccC-cccceeeeccchhhheeee
Confidence 233332 221 223433322 22 89999999999975 22 24469999999974
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=79.96 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC--------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE--------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e--------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-.-.+++.+|.+.+|+.|.+.||.||.||+|.+..-- -..+.|.+++..
T Consensus 44 P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~----------------------- 100 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRH----------------------- 100 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCC-----------------------
Confidence 3467789999999999999999999999999974320 112344442211
Q ss_pred ccccccCcccccccchhhhH-HHHh----c--cC-CceEEEecccccCCCCCCc---ccccccceeeEEccCCHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYA----T--AL-SNVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMAC 285 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~----~--g~-~kvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~ 285 (487)
+++++|+...+-.. .++. + .+ -|+|||++|||.|.. ..+ =.-||+|.|.|....+-.+....
T Consensus 101 ------~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~r-p~~Gl~R~reF~q~d~~~f~~~~~~a~~~ 173 (565)
T PRK09194 101 ------GRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIR-PRFGLMRGREFIMKDAYSFHADEESLDET 173 (565)
T ss_pred ------CCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCC-CCCcccccccEEEeeEEEEcCChHHHHHH
Confidence 34455554333222 2221 1 12 289999999999932 111 23599999999977665555544
Q ss_pred HHHHH---HHHHHHh
Q 011364 286 ATAYL---QYVVRYI 297 (487)
Q Consensus 286 ~e~li---~~~~~~~ 297 (487)
.++++ ..+++.+
T Consensus 174 ~~~~~~~~~~i~~~l 188 (565)
T PRK09194 174 YDAMYQAYSRIFDRL 188 (565)
T ss_pred HHHHHHHHHHHHHHh
Confidence 44444 4455443
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.1e-05 Score=74.94 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---CC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
-.+++..|.+.+++.+.+.||.||.||+|.....- |. .+.|.++. .
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~--------------------~------ 82 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEE--------------------E------ 82 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEecc--------------------C------
Confidence 56777889999999999999999999999885421 11 12222210 0
Q ss_pred ccccCcccccccchhhhH-HHHhc------cCC-ceEEEecccccCCCCCCc---ccccccceeeEEccCCHHHHHHHHH
Q 011364 219 QDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACAT 287 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~l-~ll~~------g~~-kvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~~e 287 (487)
+++++|+...+-.. ++.+. .+. |+|++++|||+|...+.+ =.-||+|.|++.- +.-++..+.++
T Consensus 83 ----~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~-~~~e~~~~e~~ 157 (298)
T cd00771 83 ----DEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF-CTPDQIKEEIK 157 (298)
T ss_pred ----CceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE-eCCcchHHHHH
Confidence 12344444333332 33222 233 899999999999762111 1259999999985 43344444444
Q ss_pred HHHHHH
Q 011364 288 AYLQYV 293 (487)
Q Consensus 288 ~li~~~ 293 (487)
+++..+
T Consensus 158 e~l~~~ 163 (298)
T cd00771 158 GVLDLI 163 (298)
T ss_pred HHHHHH
Confidence 444433
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.2e-05 Score=78.06 Aligned_cols=119 Identities=19% Similarity=0.326 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCCeEEEeCCeeeccCC-CCCCC--CceeeecCCCcccccCCCCCCCCCCCCCCcccccc
Q 011364 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASDC-EGAGE--QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~-~~gF~EV~TP~L~~~~~-eg~~~--~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (487)
-...++..+|++.+++.+. +.||.||.||.|.+... ++.+. -|. .+
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~------------------------------~~ 216 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFE------------------------------ED 216 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccch------------------------------hh
Confidence 3567788899999999998 99999999999998543 12211 110 01
Q ss_pred cc---CcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCC------CCcccccccceeeEEccCCHHHHH
Q 011364 221 FF---EKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 221 ~~---~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~lm 283 (487)
.| +.+.||....|..+ -++..- + =|+|++++|||+|... +--=.-||+|.|.+ .|+.-++..
T Consensus 217 ly~i~~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~ 295 (425)
T PRK05431 217 LYKIEDDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSY 295 (425)
T ss_pred ceEecCCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHH
Confidence 11 34567777777666 333322 2 2799999999999641 10123499999998 578778887
Q ss_pred HHHHHHHHHHH
Q 011364 284 ACATAYLQYVV 294 (487)
Q Consensus 284 ~~~e~li~~~~ 294 (487)
+..++++...-
T Consensus 296 ~~~~~~l~~~~ 306 (425)
T PRK05431 296 AELEELTANAE 306 (425)
T ss_pred HHHHHHHHHHH
Confidence 77777776553
|
|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=77.45 Aligned_cols=117 Identities=16% Similarity=0.268 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCCC-------CceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGE-------QFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~~-------~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-...++..++++.+++.+.+.||.||.||.|.+... ++.+. .|.++
T Consensus 170 p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~-------------------------- 223 (418)
T TIGR00414 170 NDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE-------------------------- 223 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--------------------------
Confidence 367888999999999999999999999999998653 22221 11110
Q ss_pred ccccccCcccccccchhhhHH-HHhcc------CC-ceEEEecccccCCCC------CCcccccccceeeEEccCCHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNAE-TYATA------LS-NVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l~-ll~~g------~~-kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~l 282 (487)
+.+.+|....|..+- +...- +. |+|++++|||+|... +--=.-||+|.|.+ .|++-++.
T Consensus 224 ------~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~-~f~~~e~s 296 (418)
T TIGR00414 224 ------DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELV-KFCKPEES 296 (418)
T ss_pred ------CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEE-EEcCHHHH
Confidence 234567766666552 22221 22 799999999999631 11123499999994 58888887
Q ss_pred HHHHHHHHHHHH
Q 011364 283 MACATAYLQYVV 294 (487)
Q Consensus 283 m~~~e~li~~~~ 294 (487)
.+..++++...-
T Consensus 297 ~~~~~~~~~~~~ 308 (418)
T TIGR00414 297 AEELEEMTSDAE 308 (418)
T ss_pred HHHHHHHHHHHH
Confidence 777777766553
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=72.02 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
.-.+.+..+.+.+++.|...||-||.||++.....- ...+.|.+.+..
T Consensus 17 ~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~----------------------------- 67 (281)
T PRK12293 17 KSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEK----------------------------- 67 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCC-----------------------------
Confidence 356678889999999999999999999999865331 112334432211
Q ss_pred Ccccccccchhhh--H-HHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC-HHHHHHHHHHHHHH
Q 011364 223 EKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQY 292 (487)
Q Consensus 223 ~~~~~L~~Spql~--l-~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~ 292 (487)
|+.+-| -|++= . |+++.. --|.|++++|||.|. .||+|+.+|.-+.+ ..|++.++-+.++.
T Consensus 68 g~~l~L--RpD~T~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~ 138 (281)
T PRK12293 68 NHQISL--RADSTLDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEE 138 (281)
T ss_pred CCEEEE--CCcCCHHHHHHHHHhcccCCCceeEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHH
Confidence 222222 22222 1 333321 138999999999873 59999999998764 66666666665555
Q ss_pred H
Q 011364 293 V 293 (487)
Q Consensus 293 ~ 293 (487)
+
T Consensus 139 l 139 (281)
T PRK12293 139 L 139 (281)
T ss_pred c
Confidence 4
|
|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0001 Score=74.16 Aligned_cols=116 Identities=18% Similarity=0.305 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-...+++.+|.+.+++.+.+.||.||.||.|.+..- ++.+ +.|.++
T Consensus 49 p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~-------------------------- 102 (297)
T cd00770 49 GDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE-------------------------- 102 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--------------------------
Confidence 346788899999999999999999999999998643 1111 122210
Q ss_pred ccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCC------CCCcccccccceeeEEccCCHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~------~t~rHl~EFtmlE~e~~~~~~~~l 282 (487)
+.+++|....+..+ .+...- + =|+|++++|||+|.. .+---.-||+|.|.+. |+.-++.
T Consensus 103 ------~~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~ 175 (297)
T cd00770 103 ------GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEES 175 (297)
T ss_pred ------CCCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHH
Confidence 13456666666665 333321 2 279999999999965 1222346999999974 6655666
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
.+..++++...
T Consensus 176 ~~~~~~~l~~~ 186 (297)
T cd00770 176 WEELEELISNA 186 (297)
T ss_pred HHHHHHHHHHH
Confidence 66666655544
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00024 Score=77.95 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---CCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
+-.-.+++..|.+.+|+.+...||.||.||++....-- |.. +.|.+++.
T Consensus 196 ~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~----------------------- 252 (563)
T TIGR00418 196 LPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTEL----------------------- 252 (563)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccC-----------------------
Confidence 34567788999999999999999999999999975320 111 12222110
Q ss_pred cccccccCcccccccchhhhH-HHHhcc------CC-ceEEEecccccCCCCCC-----cccccccceeeEEccCCHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------LS-NVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~g------~~-kvfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~~~~~~~~l 282 (487)
=++.++|+....... ++.+.. +. |+|++|+|||+|.. +. | .-||+|.|+|.-. ..++.
T Consensus 253 ------~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-g~~~Gl~R-~reF~q~~~~~~~-~~~~~ 323 (563)
T TIGR00418 253 ------DNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQS-GELHGLMR-VRGFTQDDAHIFC-TEDQI 323 (563)
T ss_pred ------CCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCC-cCCcCccc-ccceEEeeeEEEc-CHHHH
Confidence 034455655554443 443322 22 89999999999955 32 3 2489999999743 34555
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
....++++..+
T Consensus 324 ~~e~~~~i~~~ 334 (563)
T TIGR00418 324 KEEFKNQFRLI 334 (563)
T ss_pred HHHHHHHHHHH
Confidence 55544444433
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00025 Score=77.99 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++..|.+.+++.+.+.||.||.||+|....- .|. .+.|.+++..
T Consensus 202 ~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~---------------------- 259 (575)
T PRK12305 202 HPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEID---------------------- 259 (575)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccC----------------------
Confidence 4466788999999999999999999999999998532 011 1223221100
Q ss_pred cccccccCcccccccchhhh-HHHHhc------cCC-ceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLN-AETYAT------ALS-NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~-l~ll~~------g~~-kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (487)
++.+.|+.-..-. -++.+. .+. |.|++|+|||+|.. +.+| .-||+|.|++. |++.+...
T Consensus 260 -------~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~~~~Gl~R~reF~q~~~~i-f~~~~~~~ 330 (575)
T PRK12305 260 -------EEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKS-GVLHGLTRVRGFTQDDAHI-FCTPDQIE 330 (575)
T ss_pred -------CceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCC-CCCcCcccccCeEEcceEE-EeCHHHHH
Confidence 2333343222222 233222 233 89999999999976 2222 25999999995 77766666
Q ss_pred HHHHHHHHHHHHHh
Q 011364 284 ACATAYLQYVVRYI 297 (487)
Q Consensus 284 ~~~e~li~~~~~~~ 297 (487)
+.+.+++..+..-+
T Consensus 331 ~e~~e~i~l~~~~~ 344 (575)
T PRK12305 331 DEILKVLDFVLELL 344 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665554444
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00016 Score=77.49 Aligned_cols=121 Identities=18% Similarity=0.092 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C-C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e-g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
.-.+++..|.+.+++.|.+.||.||.||.|.+..- + | ..+.|.+++...
T Consensus 42 ~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~---------------------- 99 (477)
T PRK08661 42 YGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGG---------------------- 99 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCC----------------------
Confidence 35788899999999999999999999999987532 1 1 223455543210
Q ss_pred ccccccCcccccccchhhhH-----HHHhcc--CC-ceEEEecccccCCCCCC--cccccccceeeEEccCCHHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-----ETYATA--LS-NVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-----~ll~~g--~~-kvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
.=.+.+++|+...+-.. +.+.+. +. |+||+++|||+|.. ++ -=.-||+|.|.+..+++.++..+..
T Consensus 100 ---~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~ 175 (477)
T PRK08661 100 ---EKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEET 175 (477)
T ss_pred ---CccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHH
Confidence 00123455655554333 222221 22 79999999999976 33 2346999999999999988887777
Q ss_pred HHHHHH
Q 011364 287 TAYLQY 292 (487)
Q Consensus 287 e~li~~ 292 (487)
++++..
T Consensus 176 ~~~l~~ 181 (477)
T PRK08661 176 LEMLEI 181 (477)
T ss_pred HHHHHH
Confidence 777653
|
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=77.17 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CC------CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.+++..|.+.+++-+.+.||.||.||.|.+..- +| ..+.|.+++...
T Consensus 37 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~----------------------- 93 (472)
T TIGR00408 37 GFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGL----------------------- 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCC-----------------------
Confidence 4566899999999999999999999999987431 11 224555543221
Q ss_pred cccccCcccccccchhhhH-HHHhc----c--CC-ceEEEecccccCCCCC--CcccccccceeeEEccCCHHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETYAT----A--LS-NVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACAT 287 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll~~----g--~~-kvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (487)
+=.+.+++|+...+-.. .+... . +. |+||+++|||+|...+ --=.-||+|.|.+..+++.++..+..+
T Consensus 94 --~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~ 171 (472)
T TIGR00408 94 --SKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVL 171 (472)
T ss_pred --CccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHH
Confidence 00123455555555443 22222 1 22 7999999999997621 012459999999988999888887777
Q ss_pred HHHHHH
Q 011364 288 AYLQYV 293 (487)
Q Consensus 288 ~li~~~ 293 (487)
+++...
T Consensus 172 ~~l~~y 177 (472)
T TIGR00408 172 RALDIY 177 (472)
T ss_pred HHHHHH
Confidence 776543
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00035 Score=70.61 Aligned_cols=117 Identities=19% Similarity=0.244 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
-.-.+.+..+.+.+++.|...||.||+||++..... +...+.|.+.+.+
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~------------------------- 61 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRS------------------------- 61 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecC-------------------------
Confidence 345778899999999999999999999999987431 2222444442211
Q ss_pred ccccCcccccccchhhhH-HHHhc-----cCCceEEEecccccCCCCCCcccccccceeeEEccCC-HH---HHHHHHHH
Q 011364 219 QDFFEKPAFLTVSGQLNA-ETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACATA 288 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~l-~ll~~-----g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~---~lm~~~e~ 288 (487)
|..+-|+.---.-. |+++. -..|+|++|+|||.+.. ...+.-||+|+.+|.-..+ .. |++.++-+
T Consensus 62 ----G~~l~LR~D~T~~iaR~~a~~~~~~~~~r~~y~g~vfR~~~~-~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e 136 (311)
T PF13393_consen 62 ----GRVLALRPDLTVPIARYVARNLNLPRPKRYYYIGPVFRYERP-GKGRPREFYQCGFEIIGSSSLEADAEVIKLADE 136 (311)
T ss_dssp ----SSEEEE-SSSHHHHHHHHHHCCGSSSSEEEEEEEEEEEEETT-TTTBESEEEEEEEEEESSSSHHHHHHHHHHHHH
T ss_pred ----CcEeccCCCCcHHHHHHHHHhcCcCCCceEEEEcceeecccc-CCCCCceeEEEEEEEECCCCHHHHHHHHHHHHH
Confidence 22222221111111 44433 23589999999999976 3456689999999987764 33 66776666
Q ss_pred HHH
Q 011364 289 YLQ 291 (487)
Q Consensus 289 li~ 291 (487)
++.
T Consensus 137 ~l~ 139 (311)
T PF13393_consen 137 ILD 139 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
... |
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00029 Score=73.66 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.-.+.|..+.+.+++.|...||.||.||++..... +...+.|.+.+.+.
T Consensus 14 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~----------------------- 70 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLS----------------------- 70 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCC-----------------------
Confidence 345677889999999999999999999999975322 11123444432200
Q ss_pred cccccCccccccc--chhhhHHHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHHHHH
Q 011364 218 SQDFFEKPAFLTV--SGQLNAETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMAC 285 (487)
Q Consensus 218 ~~~~~~~~~~L~~--Spql~l~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~lm~~ 285 (487)
|+.+-|+. .+++. |+++.. --|+|++++|||.|.. ..-+.-||+|+.+|.-+.+ . -|++.+
T Consensus 71 -----g~~l~LRpD~T~~ia-R~~a~~~~~~~~p~r~~y~g~vfR~~~~-~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l 143 (391)
T PRK12292 71 -----GRTLGLRPDMTAQIA-RIAATRLANRPGPLRLCYAGNVFRAQER-GLGRSREFLQSGVELIGDAGLEADAEVILL 143 (391)
T ss_pred -----CCEEEECCCCcHHHH-HHHHHhccCCCCCeEEEeeceeeecCCC-cCCCccchhccceEEeCCCCchHHHHHHHH
Confidence 22222221 12221 333322 2389999999999976 3455689999999987654 2 366666
Q ss_pred HHHHHHHH
Q 011364 286 ATAYLQYV 293 (487)
Q Consensus 286 ~e~li~~~ 293 (487)
+-+.+..+
T Consensus 144 ~~~~l~~l 151 (391)
T PRK12292 144 LLEALKAL 151 (391)
T ss_pred HHHHHHHc
Confidence 66666554
|
|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00034 Score=74.30 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
.-.+++.+|.+.+|+-+.+.||.||.||.|.+..-- | ..+.|.+++..
T Consensus 45 ~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~------------------------ 100 (439)
T PRK12325 45 LGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRH------------------------ 100 (439)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCC------------------------
Confidence 357788999999999999999999999999985210 1 11344332111
Q ss_pred cccccCcccccccch-hh----hHHHHhc--cC-CceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSG-QL----NAETYAT--AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMAC 285 (487)
Q Consensus 218 ~~~~~~~~~~L~~Sp-ql----~l~ll~~--g~-~kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm~~ 285 (487)
+.++.|.... +. +...+.+ .+ =|+|||++|||+|.. + +| .-||+|-|+|....+.+++.+.
T Consensus 101 -----~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~-~-~~GL~R~reF~~~D~h~f~~~~~~a~~~ 173 (439)
T PRK12325 101 -----DREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIR-P-RFGVMRGREFLMKDAYSFDLDEEGARHS 173 (439)
T ss_pred -----CCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCC-C-CCCccccceEeEeccEEEeCCHHHHHHH
Confidence 2333454322 22 2222221 13 389999999999954 3 32 4699999999977888777776
Q ss_pred HHHHHHHH
Q 011364 286 ATAYLQYV 293 (487)
Q Consensus 286 ~e~li~~~ 293 (487)
.++++...
T Consensus 174 ~~~~~~~~ 181 (439)
T PRK12325 174 YNRMFVAY 181 (439)
T ss_pred HHHHHHHH
Confidence 66655444
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00035 Score=77.75 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
.+-.-.+++..|.+.+++.+...||.||.||++....- .| ..+.|.+++..
T Consensus 265 ~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~--------------------- 323 (638)
T PRK00413 265 WHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESD--------------------- 323 (638)
T ss_pred EcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCC---------------------
Confidence 34466788999999999999999999999999987542 11 11234332110
Q ss_pred ccccccccCcccccccchhhh-HHHHhc------cCC-ceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLN-AETYAT------ALS-NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~-l~ll~~------g~~-kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (487)
++.+.|+....-. -++.+. .+. |+|++|+|||+|... ..| .-||||.|++. |..-+..
T Consensus 324 --------~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~~-~g~~~~~ 393 (638)
T PRK00413 324 --------GEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSG-ALHGLMRVRGFTQDDAHI-FCTPEQI 393 (638)
T ss_pred --------CcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCC-CCcCcceeeeeEEeeEEE-EcCHHHH
Confidence 2233333222211 133221 233 899999999999772 211 24999999997 6554444
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
.+.+.++|..+
T Consensus 394 ~~e~~eii~l~ 404 (638)
T PRK00413 394 EEEVKKVIDLI 404 (638)
T ss_pred HHHHHHHHHHH
Confidence 44434444433
|
|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00027 Score=71.65 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (487)
.-.+.+..+.+.+++.|.+.||.||+||++..... +...+.|.+.+.+
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~-------------------------- 59 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSL-------------------------- 59 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCC--------------------------
Confidence 34677889999999999999999999999987432 1112234332211
Q ss_pred cccCccccccc--chhhhHHHHhc---c---CCceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHHHHHHH
Q 011364 220 DFFEKPAFLTV--SGQLNAETYAT---A---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACAT 287 (487)
Q Consensus 220 ~~~~~~~~L~~--Spql~l~ll~~---g---~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~lm~~~e 287 (487)
|+.+.|+. .+++ .+.++. + --|+|++|+|||.|.. ..-+.-||+|+.+|.-..+ . -|++.++-
T Consensus 60 ---g~~l~LRpD~T~~i-aR~~~~~~~~~~~p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~ 134 (314)
T TIGR00443 60 ---GRVLGLRPDMTTPI-ARAVSTRLRDRPLPLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGPAADAEVIALLI 134 (314)
T ss_pred ---CCEEeecCcCcHHH-HHHHHHhcccCCCCeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCchhHHHHHHHHH
Confidence 22222221 2232 243332 2 2489999999999987 4567789999999986543 1 24555555
Q ss_pred HHHHH
Q 011364 288 AYLQY 292 (487)
Q Consensus 288 ~li~~ 292 (487)
+.+..
T Consensus 135 ~~l~~ 139 (314)
T TIGR00443 135 EALKA 139 (314)
T ss_pred HHHHH
Confidence 54443
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00037 Score=77.53 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc----
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF---- 222 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 222 (487)
-.+++..|.+.+++.+.+.||.||.||+|....- |.-+- +. +.+. +.-|+
T Consensus 273 g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l------~~~sG-~~----------~~~~---------~emy~~d~~ 326 (639)
T PRK12444 273 GQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEL------WERSG-HW----------DHYK---------DNMYFSEVD 326 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHH------HhhcC-Ch----------hhhh---------hhcCeecCC
Confidence 4456777999999999999999999999998532 21110 00 0000 00111
Q ss_pred CcccccccchhhhH-HHHhccC-------CceEEEecccccCCCCC--C-cccccccceeeEEccCCHHHHHHHHHHHHH
Q 011364 223 EKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSNT--S-RHLAEFWMIEPELAFADLKDDMACATAYLQ 291 (487)
Q Consensus 223 ~~~~~L~~Spql~l-~ll~~g~-------~kvfeI~~~FR~E~~~t--~-rHl~EFtmlE~e~~~~~~~~lm~~~e~li~ 291 (487)
++.++|+...+... ++..... -|+|++++|||.|.+.. . -=.-||+|.|.+ .|++-++..+..++++.
T Consensus 327 ~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~ 405 (639)
T PRK12444 327 NKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMA 405 (639)
T ss_pred CcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHH
Confidence 23445666555554 4433221 28999999999997521 1 012489999999 68887777776666665
Q ss_pred HHHH
Q 011364 292 YVVR 295 (487)
Q Consensus 292 ~~~~ 295 (487)
.+..
T Consensus 406 ~~~~ 409 (639)
T PRK12444 406 QIDY 409 (639)
T ss_pred HHHH
Confidence 5433
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00039 Score=75.40 Aligned_cols=122 Identities=12% Similarity=0.095 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC-CCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e-g~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.++|..|.+.+|+.+.+.||.||.||.+....-- ..+ +.|.++ . +
T Consensus 164 lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~-~-------------------~--- 220 (545)
T PRK14799 164 HPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFN-M-------------------E--- 220 (545)
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceee-c-------------------c---
Confidence 45678899999999999999999999999998764320 111 112110 0 0
Q ss_pred cccccccCcccccccchhhhH-HHHhcc------CC-ceEEEecccccCCCCCC----cccccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------LS-NVYTFGPTFRAENSNTS----RHLAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~g------~~-kvfeI~~~FR~E~~~t~----rHl~EFtmlE~e~~~~~~~~lm 283 (487)
+++.+|+.-..-.. ++.... +. |+|++++|||+|.+ +. .=.-||||.|+.. |++.+++.
T Consensus 221 -------~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~s-g~l~GL~RvReF~Q~DaHi-f~~~~q~~ 291 (545)
T PRK14799 221 -------GDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKK-GELYGLLRVRGFVQDDGHI-FLREDQLR 291 (545)
T ss_pred -------CceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCC-CCccccccceeEEEcccEE-EeCHHHHH
Confidence 23334444433333 332221 22 89999999999987 33 2346999999998 88888887
Q ss_pred HHHHHHHHHHHHHh
Q 011364 284 ACATAYLQYVVRYI 297 (487)
Q Consensus 284 ~~~e~li~~~~~~~ 297 (487)
+.+.+++..+..-.
T Consensus 292 ~E~~~~l~~i~~vy 305 (545)
T PRK14799 292 EEIKMLISKTVEVW 305 (545)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877776665544
|
|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00041 Score=77.63 Aligned_cols=123 Identities=19% Similarity=0.180 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
+-.-.+++..|++.+|+.+.+.||.||.||.|.+..- .+.+ +.|.++ .
T Consensus 317 lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~-~----------------------- 372 (686)
T PLN02908 317 LPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFE-I----------------------- 372 (686)
T ss_pred echHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEe-c-----------------------
Confidence 4567789999999999999999999999999998542 1111 122210 0
Q ss_pred cccccccCcccccccchhhhH-HHHhc------cCC-ceEEEecccccCCCC---CCcccccccceeeEEccCCHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDMA 284 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~------g~~-kvfeI~~~FR~E~~~---t~rHl~EFtmlE~e~~~~~~~~lm~ 284 (487)
-+.+++|+....-.. .+... .+. |+|++++|||+|.+. +-.=.-||+|.|.+. |+..+++.+
T Consensus 373 ------~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~ 445 (686)
T PLN02908 373 ------EKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKD 445 (686)
T ss_pred ------CCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHH
Confidence 023344444443333 22221 122 899999999999762 212235899999998 888888888
Q ss_pred HHHHHHHHHHHHh
Q 011364 285 CATAYLQYVVRYI 297 (487)
Q Consensus 285 ~~e~li~~~~~~~ 297 (487)
.+++++..+..-+
T Consensus 446 e~~~~l~~~~~v~ 458 (686)
T PLN02908 446 EVKGVLDFLDYVY 458 (686)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665443
|
|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0005 Score=73.96 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------C-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------E-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
+-.-.+.|..|.+.+++.|...||.||.||++...+- + -..+.|.+.+..
T Consensus 80 lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~----------------------- 136 (487)
T PLN02530 80 PPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKG----------------------- 136 (487)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCC-----------------------
Confidence 3456778899999999999999999999999988432 0 011233332111
Q ss_pred ccccccCcccccccchhhh--H-HHHhcc-----C-CceEEEecccccCCCCCCcccccccceeeEEccCC----HHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLN--A-ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDM 283 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~--l-~ll~~g-----~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm 283 (487)
|+.+-|+ |++= . |+++.. + -|.|++++|||.|..... +.-||+|+.+|.-+.+ --|++
T Consensus 137 ------g~~l~LR--pD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEvi 207 (487)
T PLN02530 137 ------GRRVALR--PELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAELL 207 (487)
T ss_pred ------CCEEecC--CCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHHH
Confidence 2332232 3332 2 444332 2 289999999999976333 4579999999987654 23556
Q ss_pred HHHHHHHHHH
Q 011364 284 ACATAYLQYV 293 (487)
Q Consensus 284 ~~~e~li~~~ 293 (487)
.++.+.+..+
T Consensus 208 ~l~~~~l~~l 217 (487)
T PLN02530 208 AAIVTFFKRV 217 (487)
T ss_pred HHHHHHHHHc
Confidence 6555544443
|
|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00054 Score=76.10 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
.+-.-...|..|...+++.|...||.||+||++..... +...+.|.+.+..
T Consensus 336 ~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~g----------------------- 392 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQG----------------------- 392 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCC-----------------------
Confidence 35567788999999999999999999999999975421 1112234432211
Q ss_pred ccccccCcccccccchhhhH-HHHhcc---CCceEEEecccccCCCCCCcccccccceeeEEccC-C-H---HHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACAT 287 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~~g---~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~-~---~~lm~~~e 287 (487)
|+.+-|+.---.-. |+++.. --|.|+|++|||.|.. ..-+.-||+|+.+|..+. + . -|++.++-
T Consensus 393 ------Gr~LaLRPDlTvPiAR~vA~n~~~p~KrYyiG~VFR~e~p-qkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~ 465 (763)
T PLN02972 393 ------GELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNP-SKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLT 465 (763)
T ss_pred ------CCEEEeCCCChHHHHHHHHhCCCCcceEEEeccEEecCCC-CCCCCccceEEeEEEEcCCCcchhhHHHHHHHH
Confidence 22222221111111 444322 2378889999999976 344568999999999875 2 2 36677777
Q ss_pred HHHHHH
Q 011364 288 AYLQYV 293 (487)
Q Consensus 288 ~li~~~ 293 (487)
+.++.+
T Consensus 466 E~L~~L 471 (763)
T PLN02972 466 ELLDEL 471 (763)
T ss_pred HHHHhC
Confidence 666554
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00045 Score=73.02 Aligned_cols=118 Identities=18% Similarity=0.246 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC--C--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
+-.-...+..+.+.+++.|...||.||.||+|...+. . |. .+.|.+++.+
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~--------------------- 72 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQG--------------------- 72 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCC---------------------
Confidence 3445677889999999999999999999999987531 0 11 1244443221
Q ss_pred ccccccccCcccccccchhhhH---HHHhc----cCC-ceEEEecccccCCCCCCcccccccceeeEEccCC----HHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA---ETYAT----ALS-NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDD 282 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l---~ll~~----g~~-kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~l 282 (487)
|+.+.| -|++=. |+++. ... |.|++++|||.|.. ..-+.-||+|+.+|.-..+ --|+
T Consensus 73 --------g~~l~L--RpD~T~~iaR~va~~~~~~~p~r~~y~g~vfR~~~~-~~gr~rE~~Q~g~EiiG~~~~~adaEv 141 (423)
T PRK12420 73 --------KRDLAL--RYDLTIPFAKVVAMNPNIRLPFKRYEIGKVFRDGPI-KQGRFREFIQCDVDIVGVESVMAEAEL 141 (423)
T ss_pred --------Cceecc--cccccHHHHHHHHhCcCCCCCeeEEEEcceECCCCC-CCCccceeEECCeeeECCCCCcccHHH
Confidence 222222 222221 33332 123 89999999999976 3456789999999986653 2467
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
+.++-+.++.+
T Consensus 142 i~la~~~l~~l 152 (423)
T PRK12420 142 MSMAFELFRRL 152 (423)
T ss_pred HHHHHHHHHHC
Confidence 77776666544
|
|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00056 Score=72.43 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC--C--C-C-----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G-A-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--e--g-~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-...|..+.+.+++.|...||-||.||++..... . | . .+.|.+.+..
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~---------------------- 73 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRS---------------------- 73 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCC----------------------
Confidence 45667889999999999999999999999988532 0 1 1 1334332211
Q ss_pred cccccccCccccccc--chhhhHHHHhc------cCC-ceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHH
Q 011364 216 DWSQDFFEKPAFLTV--SGQLNAETYAT------ALS-NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDD 282 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~--Spql~l~ll~~------g~~-kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~l 282 (487)
|+.+.|+. .|++. |+.+. ... |.|++|+|||.|.....|- -||+|+++|.-+.+ . -|+
T Consensus 74 -------g~~l~LRpd~T~~ia-R~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~Ev 144 (430)
T CHL00201 74 -------NRDITLRPEGTAGIV-RAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTEV 144 (430)
T ss_pred -------CCEEEeCCCCcHHHH-HHHHHccccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHHH
Confidence 22222322 12222 32211 123 8999999999998644454 59999999987653 1 255
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
+.++-+.++.+
T Consensus 145 i~l~~~~l~~l 155 (430)
T CHL00201 145 IHLAMQIFNEL 155 (430)
T ss_pred HHHHHHHHHHc
Confidence 55555555443
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=69.60 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC--CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.-.+.+..+.+.+++.|...||.||+||++..... .+. ...|.+.+...
T Consensus 18 p~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~----------------------- 74 (392)
T PRK12421 18 PEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLS----------------------- 74 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCC-----------------------
Confidence 345677889999999999999999999999986432 111 12343322100
Q ss_pred cccccCcccccc--cchhhhHHHHhc-----cCCceEEEecccccCCCCCCcccccccceeeEEccCC-HH---HHHHHH
Q 011364 218 SQDFFEKPAFLT--VSGQLNAETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACA 286 (487)
Q Consensus 218 ~~~~~~~~~~L~--~Spql~l~ll~~-----g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~---~lm~~~ 286 (487)
|+.+-|+ ..+++. |+.+. .--|.|++++|||.+.....| .-||+|+.+|.-+.+ .. |++.++
T Consensus 75 -----g~~l~LRpD~T~~ia-R~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~l~ 147 (392)
T PRK12421 75 -----GRLMGVRADITPQVA-RIDAHLLNREGVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIRLM 147 (392)
T ss_pred -----CcEEEECCcCCHHHH-HHHHhhcCCCCceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHHHH
Confidence 1111111 112222 22221 134899999999998763333 479999999987653 32 777777
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
-+.++.+
T Consensus 148 ~e~l~~l 154 (392)
T PRK12421 148 LGLLRNA 154 (392)
T ss_pred HHHHHHc
Confidence 7777665
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00068 Score=74.92 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++.+|.+.+++...++||.||.||.|....- .+.+ +.|.+.+..
T Consensus 243 ~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~---------------------- 300 (614)
T PLN02837 243 HPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIE---------------------- 300 (614)
T ss_pred echHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCC----------------------
Confidence 4567889999999999999999999999999998543 1111 122110000
Q ss_pred cccccccCcccccccchhhh-----HHHHhc--cCC-ceEEEecccccCCCCCCc----ccccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLN-----AETYAT--ALS-NVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~-----l~ll~~--g~~-kvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm 283 (487)
+....|..+.+-. +.-+.+ .+. |++|+++|||+|.+ +.+ =.-||+|.|.+. |+..++..
T Consensus 301 -------~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~-g~~~GL~RvreF~~~e~h~-f~~~~q~~ 371 (614)
T PLN02837 301 -------DELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHI-FCLEDQIK 371 (614)
T ss_pred -------CceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCC-CCCcCcccccceEECeEEE-EeCHHHHH
Confidence 1111233333222 211111 122 79999999999975 321 234899999996 99988888
Q ss_pred HHHHHHHHHHHHHh
Q 011364 284 ACATAYLQYVVRYI 297 (487)
Q Consensus 284 ~~~e~li~~~~~~~ 297 (487)
+..++++.....-+
T Consensus 372 ~e~~~~l~~~~~~~ 385 (614)
T PLN02837 372 DEIRGVLDLTEEIL 385 (614)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777554443
|
|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0014 Score=72.22 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++..|.+.+++.+.+.||.+|.||.+..... .|-. +.|.++.-
T Consensus 223 ~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~----------------------- 279 (613)
T PRK03991 223 YPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSD----------------------- 279 (613)
T ss_pred EcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCC-----------------------
Confidence 3467889999999999999999999999999954321 1111 23332100
Q ss_pred cccccccCcccccccchhhhHH-----HHhcc--CC-ceEEEec-ccccCCCCCC----cccccccceeeEEccCCHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNAE-----TYATA--LS-NVYTFGP-TFRAENSNTS----RHLAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l~-----ll~~g--~~-kvfeI~~-~FR~E~~~t~----rHl~EFtmlE~e~~~~~~~~l 282 (487)
+.+++|+...+...= ...+. +. |+||+++ |||+|.+ +. .=+-||||.|.+.-..+.++.
T Consensus 280 -------~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~-g~l~GL~RvReF~~~D~h~f~~~~eqa 351 (613)
T PRK03991 280 -------KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQR-GELVGLKRLRAFTMPDMHTLCKDMEQA 351 (613)
T ss_pred -------CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCC-CCCcCcccccceEeeeEEEEECCHHHH
Confidence 123344443333221 11111 22 7999999 9999975 22 234589999999854568999
Q ss_pred HHHHHHHHHHHHHHh
Q 011364 283 MACATAYLQYVVRYI 297 (487)
Q Consensus 283 m~~~e~li~~~~~~~ 297 (487)
++..++++..+..-+
T Consensus 352 ~~e~~~~l~~~~~i~ 366 (613)
T PRK03991 352 MEEFEKQYEMILETG 366 (613)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888766554
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=69.62 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=38.3
Q ss_pred ceEEEecccccCCCCCCccc----ccccceeeEEccCCHHHHHHHHHHHHHHHHHHh
Q 011364 245 NVYTFGPTFRAENSNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQYVVRYI 297 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl----~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~ 297 (487)
|+.|+|+|||+|.+ + +|- -||||.|.+ .|++-+++.+.+..++..+..-+
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~~l 241 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKNWL 241 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHHHH
Confidence 79999999999976 5 443 799999997 68887777776666665554443
|
|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0044 Score=64.35 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCC------CC-CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
..+.+.+++.|...||.||.||++..... +. ..+.|.+.+.+ |+
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~-----------------------------G~ 58 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDEN-----------------------------GE 58 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCC-----------------------------CC
Confidence 37889999999999999999999987532 11 11234443221 22
Q ss_pred cccccc--chhhhHHHHhc----cCCceEEEecccccCCCCCCcccccccceeeEEccC-C-H---HHHHHHHHHHHHHH
Q 011364 225 PAFLTV--SGQLNAETYAT----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQYV 293 (487)
Q Consensus 225 ~~~L~~--Spql~l~ll~~----g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~-~---~~lm~~~e~li~~~ 293 (487)
.+.|+. .+++. |+.+. .--|+|++++|||.|. + ..-||+|+.+|.-+. + . -|++.++-+.+..+
T Consensus 59 ~l~LRpD~T~pia-R~~~~~~~~~p~R~~Y~g~VfR~~~--g--r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 59 ELCLRPDFTIPVC-RRHIATAGGEPARYAYLGEVFRQRR--D--RASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EEeeCCCCcHHHH-HHHHHcCCCCCeEEEEEccEEECCC--C--CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 222211 11221 22221 1248999999999982 2 246999999999764 3 2 37788877777654
|
|
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0014 Score=69.34 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC 180 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~ 180 (487)
...+++..|++.+++++.++||.||.||.|.....
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~ 206 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDV 206 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHH
Confidence 46888999999999999999999999999998543
|
|
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.01 Score=46.65 Aligned_cols=73 Identities=15% Similarity=0.332 Sum_probs=54.2
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEE
Q 011364 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (487)
Q Consensus 32 V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~v 111 (487)
|.|.|-|.+.+..++-.|+.|+|.. ..|.|++-+... ...... +..||-|.|.|.+.- + .+.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~--a~i~cv~f~~~~-~~~~~~--l~~Gd~V~v~G~v~~-~--~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDET--GTVWAAAFEEAG-VRAYPE--VEVGDIVRVTGEVEP-R--DGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCC--EEEEEEEEchhc-cCCcCC--CCCCCEEEEEEEEec-C--CeEEEEEEeeEEE
Confidence 4688888876446556888999987 469998875432 111234 899999999999875 3 3479999999987
Q ss_pred E
Q 011364 112 V 112 (487)
Q Consensus 112 l 112 (487)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
|
RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function. |
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.023 Score=44.82 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=54.6
Q ss_pred EEEEEEEeeeec-CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEE
Q 011364 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 32 V~v~GwV~~iR~-~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~ 110 (487)
+++.|-|.++|. .++++|+.|.|.++ .+.+++-++. ++..+ ..|..|+.|.|.|.+...+.+ +++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~--~i~~~~f~~~--~~~~~-~~l~~g~~v~v~g~v~~~~~~-~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDA--SIRCVMWRSN--ARRLG-FPLEEGMEVLVRGKVSFYEPR-GGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCe--EEEEEEEcch--hhhCC-CCCCCCCEEEEEEEEEEECCC-CEEEEEEEEEE
Confidence 678999999985 44599999999985 5899888753 33332 249999999999999965322 35788887764
|
E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis. |
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.029 Score=46.12 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=55.6
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch--HhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 011364 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 32 V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~--~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
|++.|+|.++...++-.=+.|.|+|| +|-+.+....... ..... +..|++|.|.|++..-+. ...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG--~I~~~~W~~~~~~~~~~~~~--~~~g~~v~v~G~v~~~~g---~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTG--TIEVRQWLDDDNDDSSEVEP--IEEGTYVRVFGNLKSFQG---KKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCC--cEEEEEeCCCCCcccccccc--cccCCEEEEEEEEcccCC---eeEEEEEEE
Confidence 78999999999876545567999997 4898887654311 12344 999999999999977643 466777777
Q ss_pred EEEcc
Q 011364 110 VLVGK 114 (487)
Q Consensus 110 ~vls~ 114 (487)
..+..
T Consensus 75 ~~v~d 79 (95)
T cd04478 75 RPVTD 79 (95)
T ss_pred EEeCC
Confidence 75553
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam |
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0065 Score=64.87 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-------CC-CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
--++++.+|.+.+|+-|++.|..||-=|+|+++.- ++ +.++|.+++.+
T Consensus 45 ~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg------------------------ 100 (500)
T COG0442 45 LGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRG------------------------ 100 (500)
T ss_pred cHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccC------------------------
Confidence 36888999999999999999999999999999431 12 22566665432
Q ss_pred cccccCcccccccchhhhH-HHH---hcc---CC-ceEEEecccccCCC--CCCcccccccceeeEEccCCHHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETY---ATA---LS-NVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACAT 287 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll---~~g---~~-kvfeI~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (487)
++++.|+...|--. -++ +.+ +. ++|||..+||+|.- .+---.-||+|=|.|..+.|.+++....+
T Consensus 101 -----~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~ 175 (500)
T COG0442 101 -----DRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYE 175 (500)
T ss_pred -----CceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHH
Confidence 34445555554433 222 222 22 79999999999943 01113479999999999999999988888
Q ss_pred HHHHH
Q 011364 288 AYLQY 292 (487)
Q Consensus 288 ~li~~ 292 (487)
+++..
T Consensus 176 ~~~~~ 180 (500)
T COG0442 176 KMLDA 180 (500)
T ss_pred HHHHH
Confidence 87753
|
|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.013 Score=62.67 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc---
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--- 222 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (487)
..++...+++.++++..++||.||.||.|..... ++.+....- .. ...|
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~-e~--------------------------~~~y~ie 284 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRG-DN--------------------------TQVYSID 284 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCccc-cc--------------------------CceeEEC
Confidence 4456678999999999999999999999998643 333321000 00 0001
Q ss_pred Ccccccccchh-----hhH-HHH-hccCC-ceEEEecccccCCCCCC------cccccccceeeEEccCCHHHHHHHHHH
Q 011364 223 EKPAFLTVSGQ-----LNA-ETY-ATALS-NVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKDDMACATA 288 (487)
Q Consensus 223 ~~~~~L~~Spq-----l~l-~ll-~~g~~-kvfeI~~~FR~E~~~t~------rHl~EFtmlE~e~~~~~~~~lm~~~e~ 288 (487)
+.+.||.-..| +|. +.+ -..+. |+.++++|||.|.+... --.-+|++.|... |+.-++..+..++
T Consensus 285 ~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ 363 (502)
T PLN02320 285 GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEE 363 (502)
T ss_pred CCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHH
Confidence 23345532222 333 222 12233 79999999999954111 1223799999965 7888888888888
Q ss_pred HHHHHHHH
Q 011364 289 YLQYVVRY 296 (487)
Q Consensus 289 li~~~~~~ 296 (487)
++..+-.-
T Consensus 364 ll~~~e~i 371 (502)
T PLN02320 364 LIQIEEDL 371 (502)
T ss_pred HHHHHHHH
Confidence 87766433
|
|
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.012 Score=61.47 Aligned_cols=116 Identities=17% Similarity=0.288 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc---
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--- 222 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (487)
+.++--.+++.+=++..++||.|+.+|.|+..... |.+.+-.. +.+.|
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf----------------------------~e~~y~v~ 224 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKF----------------------------EEDLYKVE 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCC----------------------------cccceEec
Confidence 44444567777777778999999999999987653 33321110 01222
Q ss_pred CcccccccchhhhH-HHH-----h-ccCC-ceEEEecccccCCCCC--------CcccccccceeeEEccCCHHHHHHHH
Q 011364 223 EKPAFLTVSGQLNA-ETY-----A-TALS-NVYTFGPTFRAENSNT--------SRHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 223 ~~~~~L~~Spql~l-~ll-----~-~g~~-kvfeI~~~FR~E~~~t--------~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
+..+||....|.-+ .+. . ..+. +++-.+||||.|.... +.| +|.++|... ++.-++-.+.-
T Consensus 225 ~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvH--QF~KVE~v~-~~~Pe~S~~~~ 301 (429)
T COG0172 225 DPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVH--QFDKVELVV-ITKPEESEEEL 301 (429)
T ss_pred CCCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeee--eeeeEEEEE-EeCcchhHHHH
Confidence 12467777776655 332 2 2233 5777999999995421 235 899999854 66776666666
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
|+|+...
T Consensus 302 E~m~~~a 308 (429)
T COG0172 302 EEMLGNA 308 (429)
T ss_pred HHHHHHH
Confidence 7666554
|
|
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.051 Score=44.78 Aligned_cols=70 Identities=20% Similarity=0.352 Sum_probs=50.5
Q ss_pred EEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc-------------------hHhHhccCCCCCcEEEEEeeEee
Q 011364 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-------------------YDQVKSGLITTGASIWIQGNVVP 94 (487)
Q Consensus 34 v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-------------------~~~~~~~~L~~gd~V~V~G~~~~ 94 (487)
|.|+|.+++......-+.|.|++| .|-|++...... .+.... +.+|++|.|.|++..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG--~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTG--VVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKV--LEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCc--eEEEEEEcCcCcccccccccccccccccccccccccc--cCCCCEEEEEEEEec
Confidence 679999999876556678999997 489988754320 012344 999999999999987
Q ss_pred cCCCCceEEEEEeEEE
Q 011364 95 SQGSKQKVELKVNKIV 110 (487)
Q Consensus 95 ~~~~~~~~el~~~~i~ 110 (487)
=++ ...|.++.+.
T Consensus 78 frg---~~ql~i~~~~ 90 (92)
T cd04483 78 YRG---EREINASVVY 90 (92)
T ss_pred cCC---eeEEEEEEEE
Confidence 543 3556666554
|
Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization. |
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.028 Score=59.83 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhh-hcCCeEEEeCCeeeccCCC---CCC-----CCceeeecCC-Ccccc---------cCCCCCC
Q 011364 146 AVARVRNALAYATHKFF-QENGFIWISSPIITASDCE---GAG-----EQFCVTTLIP-SSREA---------AESPVDA 206 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff-~~~gF~EV~TP~L~~~~~e---g~~-----~~F~vt~~~~-~~~~~---------~~~~~~~ 206 (487)
...++...+.+.+++.+ .+.||.||-+|.|.+.... |.- +.|.|++... .+... ...|++.
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 35567777888887655 4569999999999986432 211 2333332110 00000 0000000
Q ss_pred CCCCCCCCccccccccCcccccccchhhhH-HHHhcc------C-CceEEEe-cccccCCC--CCCcccccccceeeEEc
Q 011364 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFG-PTFRAENS--NTSRHLAEFWMIEPELA 275 (487)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~-~~FR~E~~--~t~rHl~EFtmlE~e~~ 275 (487)
+. ...=..+++|..+.+..+ .++..- + -|+|++. +|||.|.. ++-.=.-||+|.|...
T Consensus 301 L~----------~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~- 369 (520)
T TIGR00415 301 LK----------NGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW- 369 (520)
T ss_pred cc----------ccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-
Confidence 00 000012456888877776 443322 2 3789955 79999973 3323345999999988
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 011364 276 FADLKDDMACATAYLQYV 293 (487)
Q Consensus 276 ~~~~~~lm~~~e~li~~~ 293 (487)
+++.++..+..++++...
T Consensus 370 ~~tpEea~e~~e~mle~~ 387 (520)
T TIGR00415 370 IAEPEETEEIRDKTLELA 387 (520)
T ss_pred EeCHHHHHHHHHHHHHHH
Confidence 889999988888888654
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.045 Score=54.31 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~ 179 (487)
+.-+..+..+.+.+++.|.+.||-||.||++-..+
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d 38 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLD 38 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHH
Confidence 44566677899999999999999999999997643
|
|
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.047 Score=45.61 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=59.5
Q ss_pred CCEEEEEEEEeeeec-CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 29 GLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~-~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
-+.|.|.|=|.+.+. .++-+|++|+|+. .+|+|++-.... ..+....++.|+-|.|.|.+.--+.. +.+.+.+.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~--a~i~~~~~~~~~--~~i~~~~l~~G~~V~v~g~~~~y~~~-G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEE--ASISCVIFRSRA--RRIRGFDLKDGDKVLVRGRVSFYEPR-GSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCC--cEEEEEEEHHHH--hhCCCCCCCCCCEEEEEEEEEEECCC-cEEEEEEE
Confidence 377999999999998 6778999999987 579999987532 22220128999999999999876543 36888888
Q ss_pred EEE
Q 011364 108 KIV 110 (487)
Q Consensus 108 ~i~ 110 (487)
+|+
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 775
|
|
| >PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.058 Score=52.96 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=55.4
Q ss_pred CCCEEEEEEEEeeeecC----CCeEEEEEEcCCCCeeeEEEEeCCccc--hHhHhccCCCCCcEEEEEeeEeecCCCCce
Q 011364 28 VGLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g~i~Fi~lrD~~~~~~lQvv~~~~~~~--~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~ 101 (487)
+=+.|+|.|.|..+... .+.+|+.|-|+||...|.|+++.+... .-.+.. + .|++|.|+|++. .+.
T Consensus 65 PI~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~--~-~G~~V~VkG~vs-----r~~ 136 (256)
T PF10451_consen 65 PIRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPIND--L-IGKVVEVKGTVS-----RNE 136 (256)
T ss_dssp EE-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT----TT-EEEEEEEEE-----SSS
T ss_pred ccEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccC--C-CCcEEEEEEEEc-----cCc
Confidence 33679999999999765 678999999999833689998864210 011334 6 999999999999 236
Q ss_pred EEEEEeEEEEEc
Q 011364 102 VELKVNKIVLVG 113 (487)
Q Consensus 102 ~el~~~~i~vls 113 (487)
.+|.++.+.++.
T Consensus 137 ~ql~ve~i~~~~ 148 (256)
T PF10451_consen 137 RQLDVERIELVR 148 (256)
T ss_dssp EEEEEEEEEEET
T ss_pred EEEEEEEEEccC
Confidence 889999988765
|
Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A. |
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.015 Score=62.48 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=36.6
Q ss_pred ceEE-EecccccCCC--CCCcccccccceeeEEccCCHHHHHHHHHHHHHH
Q 011364 245 NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQY 292 (487)
Q Consensus 245 kvfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~ 292 (487)
|+|+ .|+|||+|.. ++-.=.-||+|.|.. .|++.+++.+..++++.+
T Consensus 337 rl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee~e~ll~~ 386 (517)
T PRK00960 337 KFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEIRDELLKY 386 (517)
T ss_pred HHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHHHHHHHHH
Confidence 7899 5599999952 222233599999998 689999999999998844
|
|
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.098 Score=42.99 Aligned_cols=73 Identities=19% Similarity=0.417 Sum_probs=53.2
Q ss_pred EEEEEEeeeec--CCCeEEEEEEcCCCCeeeEEEEeCCccchHh-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 011364 33 VVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 33 ~v~GwV~~iR~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
.|.|.|.+++. .+.-.|+.|.|.++ .|.+++-.....+.. ... |..||-|.|.|.+..-. .|.++++
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~--l~~Gd~V~v~G~v~~y~------ql~ve~l 71 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTG--EIDCAAYEPTKEFRDVVRL--LIPGDEVTVYGSVRPGT------TLNLEKL 71 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCc--EEEEEEECcccccccccCC--CCCCCEEEEEEEEecCC------EEEEEEE
Confidence 68999998865 45567889999874 589877654311111 234 99999999999986543 5888898
Q ss_pred EEEccC
Q 011364 110 VLVGKS 115 (487)
Q Consensus 110 ~vls~~ 115 (487)
++++..
T Consensus 72 ~~~glg 77 (91)
T cd04482 72 RVIRLA 77 (91)
T ss_pred EECCCc
Confidence 887654
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende |
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.027 Score=59.91 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=56.4
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
+.|++|.|.|-|..++.-++-+-..|+|++|. +++..-.. .+...-.. +.+||+|.|+|.+..+.+. +-|.+
T Consensus 211 ~ig~tV~I~GeV~qikqT~GPTVFtltDetg~--i~aAAFe~-aGvRAyP~--IevGdiV~ViG~V~~r~g~---lQiE~ 282 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGA--IWAAAFEE-AGVRAYPE--IEVGDIVEVIGEVTRRDGR---LQIEI 282 (715)
T ss_pred hcCceEEEEEEEEEEEEcCCCEEEEEecCCCc--eehhhhcc-CCcccCCC--CCCCceEEEEEEEeecCCc---EEEee
Confidence 78999999999999998766666789999975 88754432 11111234 9999999999999887654 44444
Q ss_pred eEEEEE
Q 011364 107 NKIVLV 112 (487)
Q Consensus 107 ~~i~vl 112 (487)
..++.|
T Consensus 283 ~~me~L 288 (715)
T COG1107 283 EAMEKL 288 (715)
T ss_pred hhhHHh
Confidence 455443
|
|
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.18 Score=42.40 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=51.4
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
...++++++.. ..++.|++.|.|.+.-..- . ..++|.+| .|+|-++... |.- .. +++++-|.+.
T Consensus 21 ~~~TV~~a~~~------~Dd~~V~L~G~Iv~~l~~d--~-Y~F~D~TG--~I~VeId~~~--w~g-~~--vt~~~~Vri~ 84 (103)
T PF04076_consen 21 TVTTVAQAKNA------KDDTPVTLEGNIVKQLGDD--K-YLFRDATG--EIEVEIDDDV--WRG-QT--VTPDDKVRIS 84 (103)
T ss_dssp ----HHHHTTS-------SSEEEEEEEEEEEEEETT--E-EEEEETTE--EEEEE--GGG--STT-------TTSEEEEE
T ss_pred CeEeHHHHhhC------cCCCeEEEEEEEEEEecCC--E-EEEECCCC--cEEEEEChhh--cCC-cc--cCCCCEEEEE
Confidence 34667777653 5678999999976654433 2 45899997 4888777542 211 23 8999999999
Q ss_pred eeEeecCCCCceEEEEEeEEE
Q 011364 90 GNVVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~ 110 (487)
|.+-+.-. ..||.|..|+
T Consensus 85 GeVDk~~~---~~~IdV~~I~ 102 (103)
T PF04076_consen 85 GEVDKDWN---KTEIDVDRIE 102 (103)
T ss_dssp EEEEEETT---EEEEEEEEEE
T ss_pred EEEeCCCC---ceEEEEEEEE
Confidence 99997643 4788887774
|
Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A. |
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.27 Score=37.06 Aligned_cols=69 Identities=17% Similarity=0.395 Sum_probs=49.7
Q ss_pred EEEEEEeeeecC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 011364 33 VVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (487)
Q Consensus 33 ~v~GwV~~iR~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~ 108 (487)
++.|.|.+++.. +.++++.|.|+++ ..+.+++-.+. ++.. .. +..|+.|.|.|++.... +...+.+.+
T Consensus 1 ~v~g~v~~~~~~~~~~~~~~~~l~D~~~-~~i~~~~~~~~--~~~~~~~--~~~g~~v~v~g~v~~~~---~~~~l~~~~ 72 (75)
T cd03524 1 TIVGIVVAVEEIRTEGKVLIFTLTDGTG-GTIRVTLFGEL--AEELENL--LKEGQVVYIKGKVKKFR---GRLQLIVES 72 (75)
T ss_pred CeEEEEEeecccccCCeEEEEEEEcCCC-CEEEEEEEchH--HHHHHhh--ccCCCEEEEEEEEEecC---CeEEEEeee
Confidence 367888888765 3789999999993 25888887643 2222 34 89999999999997643 246666654
Q ss_pred E
Q 011364 109 I 109 (487)
Q Consensus 109 i 109 (487)
+
T Consensus 73 ~ 73 (75)
T cd03524 73 I 73 (75)
T ss_pred e
Confidence 4
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco |
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.056 Score=58.95 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (487)
.-..+|..+.+.+|.-..+.||.||.||.+....- +..+ .+ -+.|...
T Consensus 218 kG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l------~~~S-GH-------------------------~~~y~e~ 265 (589)
T COG0441 218 KGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLEL------WELS-GH-------------------------WDNYKED 265 (589)
T ss_pred CcccHHHHHHHHHHHHHHhcCceEecCCeeeeccc------chhc-cc-------------------------hhhcccc
Confidence 34578899999999999999999999999988532 2211 01 0123444
Q ss_pred cccccch--hhhHHHHh---------cc---C----CceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHHH
Q 011364 226 AFLTVSG--QLNAETYA---------TA---L----SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 226 ~~L~~Sp--ql~l~ll~---------~g---~----~kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (487)
+|+..+. ++.++-|. .. . -|++++|.|||.|.+ +.-| +-+|||=|.-. |+..+++.
T Consensus 266 mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~~dQi~ 343 (589)
T COG0441 266 MFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCTPDQIK 343 (589)
T ss_pred ceeeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCc-chhhccccccceeecccce-eccHHHHH
Confidence 4444443 22222111 11 1 288999999999987 4444 47899999855 78888888
Q ss_pred HHHHHHHHHHHHHh
Q 011364 284 ACATAYLQYVVRYI 297 (487)
Q Consensus 284 ~~~e~li~~~~~~~ 297 (487)
+.+.+.+..+..-.
T Consensus 344 ~E~~~~~~~i~~v~ 357 (589)
T COG0441 344 DEFKGILELILEVY 357 (589)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776554
|
|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.14 Score=56.09 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCC--CCC---C--CCceeeecCCCcccccCCCCCCCCCCCCCCccccccccC
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDC--EGA---G--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--eg~---~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (487)
..++.+.+|++|...||.|+-|..+++..- ... . +. +.-.|+ ++ .
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~--i~l~NP------------ls--------------~ 412 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDY--VEVLNP------------IS--------------E 412 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCe--EEEcCC------------Cc--------------c
Confidence 345677899999999999999999987521 100 0 01 111111 11 1
Q ss_pred cccccccchhhhH-HHHhc---cC--CceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHH
Q 011364 224 KPAFLTVSGQLNA-ETYAT---AL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 292 (487)
Q Consensus 224 ~~~~L~~Spql~l-~ll~~---g~--~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (487)
.-.+|++|-=--+ +.+.. +. -|+||||+||+++.. +..|..|++++-+-.+.. |+.++...+|.++..
T Consensus 413 e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 413 DYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred chheEeccchHHHHHHHHhccCCCCCeeEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 1124555432222 33322 22 279999999998753 345778999999888763 788888888888754
|
|
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.27 Score=42.17 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=58.8
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
..+++++...- +.+..|++.|-|.+-- ++=.| ..||+|| +|+|.++... |.- .. +++.|-|.+.
T Consensus 44 ~~~TV~~Ak~~------~Dda~V~l~GnIv~qi--~~D~y-~FrD~sG--eI~VeIdd~~--w~g-~t--v~P~dkV~I~ 107 (128)
T COG3111 44 KVTTVDQAKTL------HDDAWVSLEGNIVRQI--GDDRY-VFRDASG--EINVDIDDKV--WNG-QT--VTPKDKVRIQ 107 (128)
T ss_pred ceeEHHHhhcc------ccCCeEEEEeeEEEee--CCceE-EEEcCCc--cEEEEecccc--cCC-cc--cCcccEEEEE
Confidence 34566555543 5678899999985433 33355 4899997 4999888653 110 23 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEE
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLV 112 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl 112 (487)
|.+-+.-. ..||.|+.|+.+
T Consensus 108 GevDk~~~---~~eIdV~~I~k~ 127 (128)
T COG3111 108 GEVDKDWN---SVEIDVKHIEKL 127 (128)
T ss_pred eEEcCCCc---cceeEhhheEec
Confidence 99987632 478888888765
|
|
| >COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.19 Score=46.92 Aligned_cols=94 Identities=12% Similarity=0.210 Sum_probs=63.6
Q ss_pred ccceeeccccCCCCC---CC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCC
Q 011364 9 RKKLKIVDVKGGPNE---GL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLI 80 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~---~~----~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L 80 (487)
.+.++||+|.....+ +. ...=..|.+-|||+++..+..-+|+.|.||+|. |-|-..+.... -++.+. +
T Consensus 39 LrpvTIKQIl~~~qd~~d~~f~vd~~Ev~~V~fVGvvrni~~~ttn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d--~ 114 (258)
T COG5235 39 LRPVTIKQILSCDQDETDSTFLVDSAEVTNVQFVGVVRNIKTSTTNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKD--L 114 (258)
T ss_pred eeeeEHHHhhcccccccCCceeecceEEeeEEEEEEEEeeeecccceEEEEecCCce--EEEEecCCCchHHHhccc--c
Confidence 466889999874211 11 001134889999999999977789999999974 77777765432 223445 7
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEE
Q 011364 81 TTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 81 ~~gd~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
.-|-.|.|.|.++.=.++ ..|.+..|
T Consensus 115 ~~~~yvkV~G~lk~F~GK---~~I~~~~i 140 (258)
T COG5235 115 EEQNYVKVNGSLKTFNGK---RSISASHI 140 (258)
T ss_pred ccccEEEEecceeeeCCe---eEEehhhe
Confidence 778899999999765433 55554444
|
|
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.49 Score=37.73 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=44.0
Q ss_pred EEEEEEEeeeec--CCCeEEEEEEcCCCCeeeEEEEeCCccchH--hHhccCCCCCcEEEEEeeEee
Q 011364 32 IVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYD--QVKSGLITTGASIWIQGNVVP 94 (487)
Q Consensus 32 V~v~GwV~~iR~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~--~~~~~~L~~gd~V~V~G~~~~ 94 (487)
|.++|-|.++|. .|+. |+.|.|.+| ++.+++-++. |+ ..+. .|..+.+|.|+|.+..
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G--~~Ev~~F~~~--~~~~~~~~-~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTG--RITVLLTKDK--EELFEEAE-DILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCC--EEEEEEeCch--hhhhhhhh-hccCCCEEEEEEEEec
Confidence 688999999873 2556 999999997 4999888753 44 3332 3889999999999954
|
PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain. |
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.27 Score=38.53 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=49.0
Q ss_pred EEEEEeeeec----CC-CeEEEEEEcCCCCeeeEEEEeCCccchHhH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 34 VAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 34 v~GwV~~iR~----~g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
+.|.|.+++. .| .++++.|.|++|. +.+++-.. .|+.. .. +..|..|.|.|++.... +..++.+.
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~--~~~~~f~~--~~~~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~ 72 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGS--IEVVVFPE--TYEKYRDL--LKEDALLLVEGKVERRD---GGLRLIAE 72 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCe--EEEEECHH--HHHHHHHH--hcCCCEEEEEEEEEecC---CceEEEee
Confidence 4566655432 23 4799999999974 88888753 24333 34 89999999999998643 25788877
Q ss_pred EEEEEc
Q 011364 108 KIVLVG 113 (487)
Q Consensus 108 ~i~vls 113 (487)
++..+.
T Consensus 73 ~i~~~~ 78 (84)
T cd04485 73 RIEDLE 78 (84)
T ss_pred ccccHH
Confidence 765443
|
The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.21 Score=50.48 Aligned_cols=123 Identities=23% Similarity=0.189 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC--------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE--------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e--------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
--+|.-.++.+.++.=|++-|=.+|.-|+|++..-. -+.++|.+-+.+
T Consensus 50 lg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~------------------------ 105 (457)
T KOG2324|consen 50 LGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRK------------------------ 105 (457)
T ss_pred chHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccC------------------------
Confidence 356777899999999999999999999999984321 123455442221
Q ss_pred cccccCcccccccchhhhH-HHHhccCC--------ceEEEecccccCCC-C-CCcccccccceeeEEccCCHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETYATALS--------NVYTFGPTFRAENS-N-TSRHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll~~g~~--------kvfeI~~~FR~E~~-~-t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
++...|+..-|=-- .+|+.-.. +||||++=||+|-- + +-----||.|=|.|. |.+-++--..+
T Consensus 106 -----gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYs-Fd~~~etA~qT 179 (457)
T KOG2324|consen 106 -----GKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYS-FDSDEETAQQT 179 (457)
T ss_pred -----CCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhc-ccCCHHHHHHH
Confidence 33444544444433 45655443 89999999999931 0 111225999999997 55433433444
Q ss_pred HHHHHHHHHHhh
Q 011364 287 TAYLQYVVRYIL 298 (487)
Q Consensus 287 e~li~~~~~~~~ 298 (487)
-.++.....++.
T Consensus 180 y~~v~~aY~~iF 191 (457)
T KOG2324|consen 180 YQLVDQAYDRIF 191 (457)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
|
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.93 Score=35.58 Aligned_cols=61 Identities=16% Similarity=0.350 Sum_probs=45.2
Q ss_pred CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEcc
Q 011364 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 45 g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~ 114 (487)
+.++++.|.|++| .+.+++-.... ..... +..|.+|.|.|++.... +..++.+.++..+..
T Consensus 18 ~~~~~~~l~D~tg--~i~~~~f~~~~--~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~~i~~l~~ 78 (83)
T cd04492 18 KPYLALTLQDKTG--EIEAKLWDASE--EDEEK--FKPGDIVHVKGRVEEYR---GRLQLKIQRIRLVTE 78 (83)
T ss_pred CcEEEEEEEcCCC--eEEEEEcCCCh--hhHhh--CCCCCEEEEEEEEEEeC---CceeEEEEEEEECCc
Confidence 3589999999997 48998876432 22234 99999999999997632 257888888876554
|
Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases. |
| >TIGR00156 conserved hypothetical protein TIGR00156 | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.61 Score=40.58 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=56.8
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEe
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G 90 (487)
..+++++.+. ..+..|++.|.|.+.-..- . +.++|++|. |+|-++... | ....++++|-|.+.|
T Consensus 45 ~~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d--~-Y~F~D~TG~--I~VeId~~~--w---~G~~v~p~d~V~I~G 108 (126)
T TIGR00156 45 KMTVDFAKSM------HDGASVTLRGNIISHIGDD--R-YVFRDKSGE--INVVIPAAV--W---NGREVQPKDMVNISG 108 (126)
T ss_pred eEeHHHHhhC------CCCCEEEEEEEEEEEeCCc--e-EEEECCCCC--EEEEECHHH--c---CCCcCCCCCEEEEEE
Confidence 3556666553 5678999999997765443 2 458999974 888886532 1 111389999999999
Q ss_pred eEeecCCCCceEEEEEeEEE
Q 011364 91 NVVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 91 ~~~~~~~~~~~~el~~~~i~ 110 (487)
.+-+.-. ..||.|++|+
T Consensus 109 eVDk~~~---~~~IdV~~I~ 125 (126)
T TIGR00156 109 SLDKKSA---PAEVDVTHIQ 125 (126)
T ss_pred EECCCCC---CeEEEEEEEE
Confidence 9986533 3678777775
|
As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. |
| >PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.24 Score=43.88 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=48.8
Q ss_pred ceeeccccCCCCC-----CCCCCCCEEEEEEEEeeeec-CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCc
Q 011364 11 KLKIVDVKGGPNE-----GLDRVGLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (487)
Q Consensus 11 ~~~i~~i~~~~~~-----~~~~~~~~V~v~GwV~~iR~-~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd 84 (487)
..+..+|.+.|.+ ...+.|+.|.|.|.|.++.. .++-.++...+..+...++|.++.+......... |+.||
T Consensus 44 ~~sa~~L~~~y~~N~~~A~~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~G~ 121 (144)
T PF12869_consen 44 SVSAEELYKDYKDNEVAADKKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAK--LKKGQ 121 (144)
T ss_dssp EEEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH----TTS
T ss_pred eecHHHHHHHHHhCHHHHHhhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhc--CCCCC
Confidence 3445556555421 33567899999999999976 4555667676655556789998876533333445 99999
Q ss_pred EEEEEeeEeec
Q 011364 85 SIWIQGNVVPS 95 (487)
Q Consensus 85 ~V~V~G~~~~~ 95 (487)
-|.|+|++.--
T Consensus 122 ~Vti~G~~~g~ 132 (144)
T PF12869_consen 122 KVTIKGICTGY 132 (144)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEEEEee
Confidence 99999998654
|
; PDB: 3F1Z_I. |
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.31 Score=51.81 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=58.7
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
.++.|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|++.+. .|..+.+|.|+|++.... +.+
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~--ie~vvFp~--~y~~~~~-~l~~~~~v~v~G~v~~~~---~~~ 350 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQ--SEAVVFPK--SYERISE-LLQVDARLIIWGKVDRRD---DQV 350 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999999863 2 4999999999974 99988764 3555432 489999999999997632 346
Q ss_pred EEEEeEEEEE
Q 011364 103 ELKVNKIVLV 112 (487)
Q Consensus 103 el~~~~i~vl 112 (487)
.+.+.++.-+
T Consensus 351 ~liv~~i~~l 360 (449)
T PRK07373 351 QLIVEDAEPI 360 (449)
T ss_pred EEEEeEeecH
Confidence 7777777533
|
|
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.57 Score=48.69 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=66.7
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeee-------ecC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCC
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL-------RAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i-------R~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L 80 (487)
-++|+||.+. ...|+|.|||.++ |.. |++.=+.|-|.+| ++++++..+..+ .+..+.|
T Consensus 57 ~~kI~dL~~~--------~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG--~ir~tlW~~~a~--~~~~~~l 124 (374)
T PRK15491 57 TTKIADINES--------SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETG--SIRLTLWDDLAD--LIKTGDI 124 (374)
T ss_pred cccHHHCCCC--------CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCC--eEEEEEECchhh--hhccCCc
Confidence 4567777643 3669999999987 222 4666678999997 499999976532 1221239
Q ss_pred CCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCC
Q 011364 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (487)
Q Consensus 81 ~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~ 118 (487)
..|+++.|.|.+.+.-. .+||.+.+-..+.+|...
T Consensus 125 e~G~v~~I~~~~~~~y~---g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 125 EVGKSLNISGYAKEGYS---GIEVNIGRYGGISESDEN 159 (374)
T ss_pred CCCCEEEEeeeeccCcc---cEEEEeCCCceeeecccc
Confidence 99999999998655432 489999888888888644
|
|
| >COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.13 Score=54.69 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhc--CCeEEEeCCeeeccC
Q 011364 148 ARVRNALAYATHKFFQE--NGFIWISSPIITASD 179 (487)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~--~gF~EV~TP~L~~~~ 179 (487)
..++..|.++-|++|.. .+++||+||+|.+..
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~ 73 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILPEE 73 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCcHH
Confidence 34567899999999965 589999999999843
|
|
| >PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.63 Score=49.81 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=26.5
Q ss_pred CccceeccHHHHHHHHcCCCCcccc--cccCCCCC
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDA--IPFPRTPG 483 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv--~~FPr~~~ 483 (487)
|...|+|++|||+|...+.++||+. -+||+.|.
T Consensus 317 pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFPa 351 (529)
T PRK06253 317 PVMNLGLGVERLAMILYGAEDVREMVYPQFYEWEL 351 (529)
T ss_pred ceEEEEEeHHHHHhhhcCcccccccCcCCCCCCCC
Confidence 5678999999999999999999984 35555553
|
|
| >PRK10053 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.3 Score=38.92 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=56.3
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEee
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (487)
+++++...- ..+..|++.|.|.+.=..- . +..+|++|. |+|-++.+. +....++++|-|.+.|.
T Consensus 50 ~tV~~a~~~------~Dd~~V~L~G~Iv~~lg~d--~-Y~F~D~tG~--I~VeID~~~-----w~G~~v~p~~kV~I~Ge 113 (130)
T PRK10053 50 MTVEQAKTM------HDGATVSLRGNLIDHKGDD--R-YVFRDKSGE--INVIIPAAV-----FDGREVQPDQMININGS 113 (130)
T ss_pred EEHHHhhcC------cCCCeEEEEEEEEEEeCCc--e-EEEECCCCc--EEEEeCHHH-----cCCCcCCCCCEEEEEEE
Confidence 467776553 4578899999986654332 2 458999974 888887542 12113999999999999
Q ss_pred EeecCCCCceEEEEEeEEE
Q 011364 92 VVPSQGSKQKVELKVNKIV 110 (487)
Q Consensus 92 ~~~~~~~~~~~el~~~~i~ 110 (487)
+-+.-. ..||.|+.|+
T Consensus 114 vDk~~~---~~~IdV~~i~ 129 (130)
T PRK10053 114 LDKKSA---PPVVRVTHLQ 129 (130)
T ss_pred ECCCCC---CeEEEEEEEe
Confidence 987633 3788888775
|
|
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.94 Score=41.94 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=54.5
Q ss_pred CCCCEEEEEEEEeeeec--CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhcc--CCCCCcEEEEEeeEeecCCCCceE
Q 011364 27 RVGLMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG--LITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~--~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
...+.|++.|-|.+.+. .+++.++.|.|++|. +-+++..+...+-.++.+ .+..|++|.|+|.+..=+.. .
T Consensus 49 ~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGt--i~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yrG~---~ 123 (204)
T COG4085 49 RLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGT--ITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYRGS---S 123 (204)
T ss_pred eeeccceeeeEEEeeecccccceEEEEEECCCCc--EEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeCCC---c
Confidence 55678999999999984 478999999999974 998887654221111111 26689999999999876554 4
Q ss_pred EEEEe
Q 011364 103 ELKVN 107 (487)
Q Consensus 103 el~~~ 107 (487)
||.+.
T Consensus 124 eVkvn 128 (204)
T COG4085 124 EVKVN 128 (204)
T ss_pred eeecc
Confidence 55443
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=1 Score=48.37 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=66.3
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeee-------cC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-------AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR-------~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~ 81 (487)
..|+||.. .++.|++.|+|.++- .. |+++=+.|-|.|| ++.+++...... .+..+.|.
T Consensus 58 ~kI~di~~--------~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG--~ir~tlW~~~a~--~~~~g~l~ 125 (484)
T PRK14699 58 VKIENITP--------ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETG--KIKLTLWDNMAD--LIKAGKIK 125 (484)
T ss_pred ccHhHccC--------CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCC--eEEEEEecCccc--hhhhcCCC
Confidence 45777753 246799999999984 22 4566678899997 499999876432 12322399
Q ss_pred CCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCC
Q 011364 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (487)
Q Consensus 82 ~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~ 122 (487)
.||+|.|.|.++.-. ++.||.+.+..++.++...++.+
T Consensus 126 ~GDvv~I~~~~r~~~---~g~el~~~~~~~i~~~~~~i~v~ 163 (484)
T PRK14699 126 AGQTLQISGYAKQGY---SGVEVNIGNNGVLTESEEEIDVA 163 (484)
T ss_pred CCCEEEEcceeccCC---CCceEEeCCCceeeccCcccccC
Confidence 999999999754332 34789888777777765445543
|
|
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.73 Score=54.11 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=60.2
Q ss_pred CCCEEEEEEEEeeeecC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 011364 28 VGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el 104 (487)
.+..|+|+|.|..++.. ++++|+.|.|.+|. +.+++-++. |+..+. .|..|.++.|+|++.... +.+.+
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~--~e~~ifp~~--~~~~~~-~l~~~~~~~v~g~v~~~~---~~~~~ 1023 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGM--VNVVVWPGL--WERQRR-EALGARLLLVRGRVQNAE---GVRHL 1023 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCC--EEEEECHHH--HHHHHH-HhccCCEEEEEEEEEecC---CeEEE
Confidence 46789999999988752 33999999999974 999988753 555432 389999999999998642 35778
Q ss_pred EEeEEEEEcc
Q 011364 105 KVNKIVLVGK 114 (487)
Q Consensus 105 ~~~~i~vls~ 114 (487)
.++++.-+..
T Consensus 1024 ~~~~i~~~~~ 1033 (1046)
T PRK05672 1024 VADRLEDLSP 1033 (1046)
T ss_pred EEeeeechHH
Confidence 8888765544
|
|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.85 Score=54.08 Aligned_cols=77 Identities=9% Similarity=0.215 Sum_probs=58.5
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
.++.|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++.... +..
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~--~y~~~~~-~l~~~~~~~v~g~v~~~~---~~~ 1070 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPK--SYERLSD-HLMTDTRLLVWAKVDRRD---DRV 1070 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999999752 2 4999999999974 99988864 3555432 489999999999997642 246
Q ss_pred EEEEeEEEEE
Q 011364 103 ELKVNKIVLV 112 (487)
Q Consensus 103 el~~~~i~vl 112 (487)
.+.++++.-+
T Consensus 1071 ~~~~~~i~~l 1080 (1170)
T PRK07374 1071 QLIIDDCREI 1080 (1170)
T ss_pred EEEEeeeecH
Confidence 7777777544
|
|
| >cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) | Back alignment and domain information |
|---|
Probab=91.22 E-value=2 Score=35.87 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=48.8
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
+.|+.|++-|+|.+.+.. . +.+.+..| ..++|.++... . +..+-+|.|.|++.. ...|.+
T Consensus 13 f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg-~~v~v~l~~~~-------~--~~~~~~vEViG~V~~------~~~I~~ 72 (101)
T cd04479 13 FVGKTVRIVGKVEKVDGD---S-LTLISSDG-VNVTVELNRPL-------D--LPISGYVEVIGKVSP------DLTIRV 72 (101)
T ss_pred hCCCEEEEEEEEEEecCC---e-EEEEcCCC-CEEEEEeCCCC-------C--cccCCEEEEEEEECC------CCeEEE
Confidence 688999999999999865 2 34554443 36899887642 3 788899999999974 245666
Q ss_pred eEEEEEcc
Q 011364 107 NKIVLVGK 114 (487)
Q Consensus 107 ~~i~vls~ 114 (487)
....-++.
T Consensus 73 ~~~~~~g~ 80 (101)
T cd04479 73 LSYIDFGD 80 (101)
T ss_pred EEEEECCC
Confidence 66555543
|
RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer. |
| >PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.1 Score=37.95 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=38.3
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~ 96 (487)
+.|+.|++-|+|.+....|+.+-+.-.|+. .++|.++... . +..+.+|.|.|++....
T Consensus 16 ~~gk~VrivGkv~~~~~~g~~~~l~~~d~~---~V~v~l~~~~-------~--~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGGSATLSTSDGG---QVTVSLNPPS-------D--EELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSSEEEEE-TTS----EEEEEESS---------S--S---SEEEEEEEE-TTS
T ss_pred hCCCeEEEEEEEeeEcCCCCEEEEEcCCCC---EEEEEeCCCC-------C--CCCCCEEEEEEEEcCCC
Confidence 689999999999999977765544334663 5788777542 2 66789999999998653
|
; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D. |
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.88 Score=42.79 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhcCCeEEEeCCeeecc
Q 011364 153 ALAYATHKFFQENGFIWISSPIITAS 178 (487)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TP~L~~~ 178 (487)
.+.+.+|++|...||.||-|..+++.
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~ 29 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSP 29 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCH
Confidence 46678899999999999999999875
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.4 Score=52.18 Aligned_cols=79 Identities=15% Similarity=0.321 Sum_probs=59.3
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+. .|..|.+|.|+|++..... +.+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~--~~~~~~~-~l~~~~~~~v~g~v~~~~~--~~~ 1062 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPK--VYEKYRS-LLNEDNIVLIKGRVSLRED--EEP 1062 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecCC--Cce
Confidence 46789999999999762 3 4999999999974 99998864 3444432 3899999999999975432 246
Q ss_pred EEEEeEEEEEc
Q 011364 103 ELKVNKIVLVG 113 (487)
Q Consensus 103 el~~~~i~vls 113 (487)
.+.+.++.-+.
T Consensus 1063 ~~~~~~~~~l~ 1073 (1151)
T PRK06826 1063 KLICEEIEPLV 1073 (1151)
T ss_pred EEEEeeeecHh
Confidence 77777776444
|
|
| >PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria | Back alignment and domain information |
|---|
Probab=90.39 E-value=4.8 Score=35.35 Aligned_cols=83 Identities=20% Similarity=0.385 Sum_probs=52.0
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEe--eeec---CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEE
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~--~iR~---~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V 86 (487)
.+..|+.... ...++.|+|.|+|. ++.. ...+.|. |.|+. ..+.|+.....++ . ++.|.-|
T Consensus 37 ~t~se~~~~~----~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-i~D~~--~~i~V~Y~G~~Pd-----~--F~eg~~V 102 (131)
T PF03100_consen 37 LTPSELAAEP----QKVGRKVRVGGLVVEGSVEYDPDGNTLTFT-ITDGG--KEIPVVYTGPLPD-----L--FREGQGV 102 (131)
T ss_dssp E-TTTTTTTS----T-TTSEEEEEEEEECTTEEE-TTSSEEEEE-EE-SS---EEEEEEES--CT-----T----TTSEE
T ss_pred cCHHHHhhcc----ccCCceEEEeeEEccCCEEEcCCCCEEEEE-EEECC--cEEEEEECCCCCc-----c--ccCCCeE
Confidence 4566666542 24789999999998 6644 3578875 78886 4699988865442 2 7789999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEccCC
Q 011364 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 87 ~V~G~~~~~~~~~~~~el~~~~i~vls~~~ 116 (487)
.|+|++... + ..+++ +||.||+
T Consensus 103 Vv~G~~~~~--g----~F~A~--~lL~Kcp 124 (131)
T PF03100_consen 103 VVEGRLGED--G----VFEAT--ELLAKCP 124 (131)
T ss_dssp EEEEEECCT--S----EEEEE--EEEETS-
T ss_pred EEEEEECCC--C----EEEEE--EEEeCCC
Confidence 999998321 1 23444 5678885
|
Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A. |
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.92 Score=53.75 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=59.9
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
.++.|++.|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+.... .|..|++|.|+|++.... +.+
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~--iEvviFp~--~ye~~~~-~L~~g~iV~V~GkVe~~~---~~~ 1047 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGR--IEVMLFSE--ALEKYRD-LLEEDRIVVVKGQVSFDD---GGL 1047 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCc--EEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 46789999999999762 3 4999999999974 99999864 2444432 389999999999997642 357
Q ss_pred EEEEeEEEEEcc
Q 011364 103 ELKVNKIVLVGK 114 (487)
Q Consensus 103 el~~~~i~vls~ 114 (487)
.|.++++.-+.+
T Consensus 1048 qlii~~I~~L~~ 1059 (1135)
T PRK05673 1048 RLTAREVMDLEE 1059 (1135)
T ss_pred EEEEeecccHHH
Confidence 778777765543
|
|
| >PRK06461 single-stranded DNA-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.99 E-value=4.4 Score=35.46 Aligned_cols=85 Identities=21% Similarity=0.182 Sum_probs=57.1
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeec-------CC--CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------QS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~-------~g--~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~ 81 (487)
..+|+||... ...|.+.|.|.++.. .+ .+.-+.|.|.|| +|.+.+..... .. +.
T Consensus 4 ~~kI~dL~~g--------~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG--~I~~tlW~~~a-----~~--l~ 66 (129)
T PRK06461 4 ITKIKDLKPG--------MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETG--RVKLTLWGEQA-----GS--LK 66 (129)
T ss_pred ceEHHHcCCC--------CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCC--EEEEEEeCCcc-----cc--CC
Confidence 4567788642 256889999985421 22 366678899997 48998887532 24 89
Q ss_pred CCcEEEEEe-eEeecCCCCceEEEEEeE---EEEEccC
Q 011364 82 TGASIWIQG-NVVPSQGSKQKVELKVNK---IVLVGKS 115 (487)
Q Consensus 82 ~gd~V~V~G-~~~~~~~~~~~~el~~~~---i~vls~~ 115 (487)
.||+|.|.+ .+.. -. +.++|.+.+ +..+.+.
T Consensus 67 ~GdvV~I~na~v~~-f~--G~lqL~i~~~~~i~~~~~~ 101 (129)
T PRK06461 67 EGEVVEIENAWTTL-YR--GKVQLNVGKYGSISESDDE 101 (129)
T ss_pred CCCEEEEECcEEee-eC--CEEEEEECCCEEEEECCcc
Confidence 999999995 5443 33 358888884 5555543
|
|
| >KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.79 Score=47.57 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeec------cCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITA------SDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~------~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (487)
+-+.+|..|++.+.+-|..+|..+|+||++-- ..+|...-.+ +... ..+
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiY---dlkD----------------------QGG 126 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIY---DLKD----------------------QGG 126 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeE---ehhh----------------------cCC
Confidence 35778999999999999999999999998753 2222221111 1110 001
Q ss_pred cccCcccccccchhhhHHHHhcc-CC--ceEEEecccccCCC-CCCcccccccceeeEEcc
Q 011364 220 DFFEKPAFLTVSGQLNAETYATA-LS--NVYTFGPTFRAENS-NTSRHLAEFWMIEPELAF 276 (487)
Q Consensus 220 ~~~~~~~~L~~Spql~l~ll~~g-~~--kvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~ 276 (487)
.......-|+++=- |+++.. .. +-|+|+++||.+.. -|.=-.-||+|+|+-.++
T Consensus 127 El~SLRYDLTVPfA---RylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG 184 (518)
T KOG1936|consen 127 ELCSLRYDLTVPFA---RYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG 184 (518)
T ss_pred cEEEeecccccHHH---HHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccc
Confidence 22222333444322 433332 22 45999999998753 133345699999998885
|
|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.8 Score=51.08 Aligned_cols=77 Identities=16% Similarity=0.272 Sum_probs=57.9
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++. |+..+. .|..|.+|.|+|++.... +..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~--~e~~vFp~~--y~~~~~-~l~~~~~~~v~G~v~~~~---~~~ 1013 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDE--MEAVVFPET--YIHFSD-KLQEGAIVLVDGTIELRN---HKL 1013 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHHH-HhccCCEEEEEEEEEecC---CcE
Confidence 46789999999998652 2 5999999999974 999988642 454432 389999999999997642 246
Q ss_pred EEEEeEEEEE
Q 011364 103 ELKVNKIVLV 112 (487)
Q Consensus 103 el~~~~i~vl 112 (487)
.+.++++.-+
T Consensus 1014 ~~~~~~i~~l 1023 (1107)
T PRK06920 1014 QWIVNGLYPL 1023 (1107)
T ss_pred EEEEeecccH
Confidence 6777776544
|
|
| >cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) | Back alignment and domain information |
|---|
Probab=89.17 E-value=8.3 Score=30.83 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=47.1
Q ss_pred EEEEEEEeeee--c--CCC-eEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC-CCcEEEEEeeEeecCCCCceEEEE
Q 011364 32 IVVAGWVRTLR--A--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQGNVVPSQGSKQKVELK 105 (487)
Q Consensus 32 V~v~GwV~~iR--~--~g~-i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~-~gd~V~V~G~~~~~~~~~~~~el~ 105 (487)
|+|.|-|-.+- . .|+ +.-+.|.|.+.. +-|..-.. ...+.+.. |+ .|+.|.|.|.+....= .+++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~S--i~~K~F~~-~~~~~~~~--ik~~G~~v~v~G~v~~D~f-~~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSS--ITVKKFLR-KDEKDKEE--LKSKGDWVRVRGKVQYDTF-SKELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCC--EEEEEecc-CChhHHhh--cccCCCEEEEEEEEEEccC-CCceEEE
Confidence 78899988762 2 344 444788999854 55544332 11223445 88 9999999999976642 2367776
Q ss_pred EeEEE
Q 011364 106 VNKIV 110 (487)
Q Consensus 106 ~~~i~ 110 (487)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 66554
|
Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.23 Score=50.52 Aligned_cols=38 Identities=34% Similarity=0.729 Sum_probs=30.0
Q ss_pred HHHHhcCCC-CccceeccHHHHHHHHcCCCCcccccccCC
Q 011364 442 LDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPR 480 (487)
Q Consensus 442 l~~~~~G~p-P~~G~giGidRL~m~l~g~~~Irdv~~FPr 480 (487)
+.+.+||.| |.--.|+|+|||+|.|.|.++||.. .+|.
T Consensus 314 ~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~m-vYpq 352 (536)
T COG2024 314 IALAEYGIDYPVMNLGLGVERLAMILHGADDVRSM-VYPQ 352 (536)
T ss_pred HHHHHcCCCCceeecchhHHHHHHHHhCchHHhhh-hccc
Confidence 344567765 7788999999999999999999964 4443
|
|
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
Probab=87.93 E-value=3.2 Score=34.75 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=49.1
Q ss_pred CEEEEEEEEeee---ec------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC-CC-
Q 011364 30 LMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ-GS- 98 (487)
Q Consensus 30 ~~V~v~GwV~~i---R~------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~-~~- 98 (487)
..++|+|||.++ |. .|++.-++|.|..| +.|++.+...... ... ..|..|+++.++|--++.. ..
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~-~~I~~t~~~~~~~--~f~-~~l~eG~vy~i~~~~V~~a~~~y 85 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDG-GEIRATFFNDAVD--KFY-DLLEVGKVYYISKGSVKVANKKF 85 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCC-CEEEEEEehHHHH--Hhh-cccccccEEEEeccEEeeccccC
Confidence 458999999853 32 26788889999954 4799999875422 111 1399999999998554432 21
Q ss_pred ---CceEEEEEe
Q 011364 99 ---KQKVELKVN 107 (487)
Q Consensus 99 ---~~~~el~~~ 107 (487)
...+||...
T Consensus 86 ~~~~~~yeI~f~ 97 (104)
T cd04474 86 NTLKNDYEITFN 97 (104)
T ss_pred CCCCCcEEEEEC
Confidence 235777654
|
RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct |
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.72 Score=53.29 Aligned_cols=60 Identities=22% Similarity=0.260 Sum_probs=40.3
Q ss_pred ceEEEEEEecCeeeeechh-HhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCC-CccceeccHHHHHHHHcCCCCccc
Q 011364 397 TVAAMDMLVPRIGELIGGS-QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRD 474 (487)
Q Consensus 397 ~~~~fdl~~~G~~El~~G~-~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~p-P~~G~giGidRL~m~l~g~~~Ird 474 (487)
--.|+|+++.|+ ||.|=- ++-++ + .| . |. =+| ++---|+|+|||++++-|.+|+=|
T Consensus 197 cGPcsEi~~~gl-EiwnlVFmqy~~-~--------~g-~---~~--------~Lp~k~VDTG~GLER~~~v~qg~~t~yd 254 (900)
T PRK13902 197 AGPCFEVLVRGL-ELATLVFMQYKK-D--------GN-R---YV--------EMPLKIVDTGYGLERIAWASQGTPTAYD 254 (900)
T ss_pred CCCceeeeeCCE-EeeeeeeeEEEc-C--------CC-e---ee--------eCCCCeeeCCcCHHHHHHHHcCCCchHH
Confidence 346788888898 999872 22111 0 11 0 00 033 555669999999999999999999
Q ss_pred ccccC
Q 011364 475 AIPFP 479 (487)
Q Consensus 475 v~~FP 479 (487)
+ .|+
T Consensus 255 t-~f~ 258 (900)
T PRK13902 255 A-IFG 258 (900)
T ss_pred H-HHH
Confidence 8 664
|
|
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=5.8 Score=40.27 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=52.8
Q ss_pred CEEEEEEEEeeee----cCCC-eEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 011364 30 LMIVVAGWVRTLR----AQSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (487)
Q Consensus 30 ~~V~v~GwV~~iR----~~g~-i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el 104 (487)
+.|..-.-|.++. +.|+ ..-+.|.|.|| +|...+...... .... +..|++|.|.|++..-+. .+.+
T Consensus 12 ~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG--~I~ak~W~~~~~--~~~~--~~~g~vv~v~G~v~~y~g---~~Ql 82 (314)
T PRK13480 12 EQVDHFLLIKSATKGVASNGKPFLTLILQDKSG--DIEAKLWDVSPE--DEAT--YVPETIVHVKGDIINYRG---RKQL 82 (314)
T ss_pred CEeeEEEEEEEceeeecCCCCeEEEEEEEcCCc--EEEEEeCCCChh--hHhh--cCCCCEEEEEEEEEEECC---cceE
Confidence 4455444455443 2343 56677789997 499988765321 2345 999999999999987644 3667
Q ss_pred EEeEEEEEccCC
Q 011364 105 KVNKIVLVGKSD 116 (487)
Q Consensus 105 ~~~~i~vls~~~ 116 (487)
.+..+.++.+..
T Consensus 83 ~i~~i~~~~~~e 94 (314)
T PRK13480 83 KVNQIRLATEED 94 (314)
T ss_pred EEEEeEECCCCC
Confidence 888888887753
|
|
| >PRK07279 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=85.49 E-value=3.8 Score=48.01 Aligned_cols=74 Identities=14% Similarity=0.344 Sum_probs=54.6
Q ss_pred CCEEEEEEEEeeeec-----CC-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceE
Q 011364 29 GLMIVVAGWVRTLRA-----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~-----~g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~ 102 (487)
++.+.+.|+|.++|. .| .++|+.|.|.+|. +.+++-++. |+..+. .|..|.+|.|+|++.... +..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~--ie~~vFp~~--y~~~~~-~l~~~~~~~v~G~v~~~~---~~~ 955 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKK--LDVTLFPET--YRQYKD-ELKEGKFYYLKGKIQERD---GRL 955 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHHH-HhccCCEEEEEEEEEecC---Cee
Confidence 456889999987763 22 4999999999974 999998653 444432 389999999999997642 246
Q ss_pred EEEEeEEE
Q 011364 103 ELKVNKIV 110 (487)
Q Consensus 103 el~~~~i~ 110 (487)
.+.++++.
T Consensus 956 ~l~~~~i~ 963 (1034)
T PRK07279 956 QMVLQQIQ 963 (1034)
T ss_pred EEEEeeee
Confidence 67777664
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=84.66 E-value=5.2 Score=43.08 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=61.7
Q ss_pred CCEEEEEEEEeeeec----------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCC
Q 011364 29 GLMIVVAGWVRTLRA----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~----------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~ 98 (487)
+..|+|.|+|.++-. .|++.=+.|.|++| .|.+++......+ ... +..|+.|.+.+.-.+-...
T Consensus 286 ~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG--~Ir~T~W~~~a~~--~~~--i~~Gd~v~i~~~y~~~~~~ 359 (484)
T PRK14699 286 MNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTG--KIRLTLWDEKTNF--LDE--IDFDETVEVLNAYSRENTF 359 (484)
T ss_pred CceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCC--eEEEEEeCccccc--ccc--cCCCceEEEEeEEEEeccC
Confidence 578999999997622 25666788999997 4999998764321 234 8899999988766554444
Q ss_pred CceEEEEEeEEEEEccCCC
Q 011364 99 KQKVELKVNKIVLVGKSDP 117 (487)
Q Consensus 99 ~~~~el~~~~i~vls~~~~ 117 (487)
.+.+||.+.+-.++.+|..
T Consensus 360 ~~~~eL~~~~~t~I~~~~~ 378 (484)
T PRK14699 360 SQQVELNLGARGIIQKSEK 378 (484)
T ss_pred CccEEEEecCceeEeecCC
Confidence 4579999998888888863
|
|
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
Probab=84.55 E-value=12 Score=28.10 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=37.8
Q ss_pred EEEEEeeeec----CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC
Q 011364 34 VAGWVRTLRA----QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (487)
Q Consensus 34 v~GwV~~iR~----~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~ 96 (487)
+.|.|.+++. .+++.-+.+.|+++ .+.++.-.... |. .+. ++.|+.+.|.|++....
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g--~i~~~~F~~~~-~~-~~~--~~~G~~~~v~Gkv~~~~ 62 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTG--TLTLVFFNFQP-YL-KKQ--LPPGTRVRVSGKVKRFR 62 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCC--EEEEEEECCCH-HH-Hhc--CCCCCEEEEEEEEeecC
Confidence 5566655432 13466677899986 48887765211 21 234 99999999999998753
|
RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha |
| >PRK07217 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=84.09 E-value=14 Score=37.14 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=67.1
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeee--ecCCCeEE-EEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL--RAQSSVTF-IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~i--R~~g~i~F-i~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
.|+||.. .++-|+|.|+|.++ +.+.++.. -.|-|.|| +|..++..+.. ... |..|++|.+.
T Consensus 74 kI~Di~~--------~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG--~IkfT~W~~s~----~~~--leeGd~~rI~ 137 (311)
T PRK07217 74 NIADIDE--------PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETG--TIKFTKWAKSD----LPE--LEEGKSYLLK 137 (311)
T ss_pred eeeecCC--------CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCc--eEEEEEccCCC----CCc--ccCCCEEEEE
Confidence 4666653 45779999999988 44567777 56789997 48888876421 223 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEccCCCCCCC
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~ 121 (487)
+..+..-.+ ..+|.+.+...+.+.+.++++
T Consensus 138 na~v~ey~G--~~~lnlg~~t~I~~~de~IeV 167 (311)
T PRK07217 138 NVVTDEYQG--RFSVKLNRTTSIEELDEDIEV 167 (311)
T ss_pred eEEEeeECC--EEEEEeCCceEEEeCCCCccc
Confidence 998876554 689999888887776655554
|
|
| >cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) | Back alignment and domain information |
|---|
Probab=84.02 E-value=9 Score=30.31 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=38.6
Q ss_pred CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE-eeEeecCCCCceEEEEEeEE
Q 011364 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 45 g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~-G~~~~~~~~~~~~el~~~~i 109 (487)
+++.=+.|.|.+| +|.+++..... ... +..|++|.++ |++..-+ +.++|.+.+.
T Consensus 22 ~~~~~~~l~D~TG--~i~~~~W~~~~----~~~--~~~G~vv~i~~~~v~~~~---g~~ql~i~~~ 76 (82)
T cd04491 22 GKVQSGLVGDETG--TIRFTLWDEKA----ADD--LEPGDVVRIENAYVREFN---GRLELSVGKN 76 (82)
T ss_pred eEEEEEEEECCCC--EEEEEEECchh----ccc--CCCCCEEEEEeEEEEecC---CcEEEEeCCc
Confidence 4566678899997 58998886542 234 9999999999 7776543 3577776653
|
SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating |
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.50 E-value=2 Score=44.73 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C-C---CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G---AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e-g---~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (487)
-.+....|.+.+++.|...||..|+||+|...++ + | -.+.|.+++..
T Consensus 16 e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~-------------------------- 69 (390)
T COG3705 16 EARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDET-------------------------- 69 (390)
T ss_pred HHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCC--------------------------
Confidence 4456677889999999999999999999998764 1 1 12356553221
Q ss_pred cccCcccccc--cchhhhH---HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCC----HHHHHHHHHHHH
Q 011364 220 DFFEKPAFLT--VSGQLNA---ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYL 290 (487)
Q Consensus 220 ~~~~~~~~L~--~Spql~l---~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~~~e~li 290 (487)
+..+-|+ ..+++.. ..+...-.|+...|++||+.+.. ..-..||+|.=+|.=+.+ --+++.++-..+
T Consensus 70 ---g~~l~LRpD~T~pVaR~~~~~~~~~P~Rl~Y~G~Vfr~~~~~-~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L 145 (390)
T COG3705 70 ---GGRLGLRPDFTIPVARIHATLLAGTPLRLSYAGKVFRAREGR-HGRRAEFLQAGIELLGDDSAAADAEVIALALAAL 145 (390)
T ss_pred ---CCeEEecccccHHHHHHHHHhcCCCCceeeecchhhhcchhc-cCcccchhhhhhHHhCCCcchhhHHHHHHHHHHH
Confidence 1222222 1233332 23334467899999999988332 223359999988875432 124444444444
Q ss_pred H
Q 011364 291 Q 291 (487)
Q Consensus 291 ~ 291 (487)
+
T Consensus 146 ~ 146 (390)
T COG3705 146 K 146 (390)
T ss_pred H
Confidence 3
|
|
| >KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.44 E-value=8.2 Score=38.06 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=53.5
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc-chHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 011364 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (487)
Q Consensus 30 ~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~-~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~ 108 (487)
..|.+-|||+++-....-++++|-|+++. |=|....... .-.+... |..|-+|.|.|.++.-.++ ..|.+.+
T Consensus 69 ~~v~~VGivr~~e~~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~--l~~~~yVkv~G~Lk~f~Gk---~sl~~fk 141 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPA--LETGTYVKVYGHLKPFQGK---KSLQVFK 141 (265)
T ss_pred EEEEEEEEEEeceecCcceEEEEecCccc--EEEEEeccccchhhhCcc--cccCcEEEeeecccCCCCc---eeEEEEe
Confidence 45889999999998877778899999974 5555554321 1112335 9999999999999875433 5667666
Q ss_pred EE
Q 011364 109 IV 110 (487)
Q Consensus 109 i~ 110 (487)
|.
T Consensus 142 I~ 143 (265)
T KOG3108|consen 142 IR 143 (265)
T ss_pred ee
Confidence 65
|
|
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=83.27 E-value=7.8 Score=43.33 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCCEEEEEEEEeeeec---------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC--
Q 011364 28 VGLMIVVAGWVRTLRA---------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ-- 96 (487)
Q Consensus 28 ~~~~V~v~GwV~~iR~---------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~-- 96 (487)
.|..++|.|||.++-. .|++-=+.|.|.+| .|++++.....+ .... |..|+++.+++-..+.-
T Consensus 290 ~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG--~IR~t~w~~~~d--~~~~--l~~G~vy~is~~~vk~y~~ 363 (637)
T PRK12366 290 DGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTG--RVRVSFWGEKAK--ILEN--LKEGDAVKIENCKVRTYYD 363 (637)
T ss_pred CCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCC--eEEEEEeCchhh--hhcc--cCCCCEEEEecCEEeeccc
Confidence 4678999999998742 26788889999996 599999876432 2234 77999999999666621
Q ss_pred -CCCceEEEEEeEEEEEcc
Q 011364 97 -GSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 97 -~~~~~~el~~~~i~vls~ 114 (487)
.+...+||.+..-..+.+
T Consensus 364 ~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 364 NEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred cCCCcCEEEEcCCceEEEe
Confidence 233468888866554443
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=83.24 E-value=0.93 Score=47.49 Aligned_cols=48 Identities=19% Similarity=0.390 Sum_probs=33.7
Q ss_pred EEEEEEecCeee-eechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcC
Q 011364 399 AAMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 468 (487)
Q Consensus 399 ~~fdl~~~G~~E-l~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g 468 (487)
--|+.|.+|.+. |++|+ ||+.+.+++ | +-.|..|||+|+|||+.++-+
T Consensus 281 ~vFe~~~~~~~~~i~~GG----RYD~L~~~f---g---------------~~~pAvGfai~lerL~~~l~~ 329 (392)
T PRK12421 281 LVFAAYIPGRGQALARGG----RYDGIGEAF---G---------------RARPATGFSMDLKELLALQFL 329 (392)
T ss_pred CEEEEEECCCCCcccCCC----CccchhHhh---C---------------CCCCCceEEeeHHHHHhhccc
Confidence 358999998655 88887 344444433 2 124889999999999987644
|
|
| >PRK07211 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=83.08 E-value=7.6 Score=41.64 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=57.4
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeec-----------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~-----------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~ 81 (487)
+|++|... ...|+|.|||.++-. .|++.=+.|-|.+| .|++++..+...- .... |.
T Consensus 55 ~I~dL~pg--------~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG--~Ir~TlW~d~ad~-~~~~--Le 121 (485)
T PRK07211 55 GIADIEPG--------MDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETG--SVRVAFWDEQAVA-AEEE--LE 121 (485)
T ss_pred cHhhCCCC--------CCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCC--eEEEEEechHhHh-hhcc--cC
Confidence 56666542 256999999987743 26888889999997 4999998754321 1224 99
Q ss_pred CCcEEEEEeeEeecCCCCceEEEEEeEE
Q 011364 82 TGASIWIQGNVVPSQGSKQKVELKVNKI 109 (487)
Q Consensus 82 ~gd~V~V~G~~~~~~~~~~~~el~~~~i 109 (487)
.|+++.|.|.+++.- +.+||.+..+
T Consensus 122 ~GdV~~I~~~~~~~y---s~~El~i~~v 146 (485)
T PRK07211 122 VGQVLRIKGRPKDGY---NGLEVSVDKV 146 (485)
T ss_pred CCCEEEEeceEeccc---cceEEEEeeE
Confidence 999999999875332 3478887754
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=1.3 Score=46.36 Aligned_cols=45 Identities=29% Similarity=0.601 Sum_probs=32.2
Q ss_pred EEEEEEecCeee-eechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHH
Q 011364 399 AAMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 465 (487)
Q Consensus 399 ~~fdl~~~G~~E-l~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~ 465 (487)
--|+.|.+|.|+ |++|+ ||+.+.+.+ |. -.|..||++|+|||+.+
T Consensus 274 ~vFe~~~~~~~~~i~~GG----RYD~L~~~f---g~---------------~~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 274 IVFEGYVDGVGNPIASGG----RYDDLLGRF---GR---------------ARPATGFSLDLDRLLEL 319 (391)
T ss_pred eEEEEEECCCCCcccCCc----chhhHHHHc---CC---------------CCCCceEEeeHHHHHhh
Confidence 458999987655 78887 455555444 21 23789999999999984
|
|
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=82.45 E-value=9.1 Score=39.86 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=57.1
Q ss_pred CEEEEEEEEeeeec-------CC---CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEee-EeecCCC
Q 011364 30 LMIVVAGWVRTLRA-------QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN-VVPSQGS 98 (487)
Q Consensus 30 ~~V~v~GwV~~iR~-------~g---~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~-~~~~~~~ 98 (487)
..|.|.|+|.++-. .| ++.=+.|-|.+| .+.+++.....++ +.. |..||+|.+.+. ++.+. -
T Consensus 177 ~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG--~Ir~t~W~~~a~~--~~~--l~~Gd~V~i~~~~~r~~~-~ 249 (374)
T PRK15491 177 SDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETG--KIRVTLWDGKTDL--ADK--LENGDSVEIINGYARTNN-Y 249 (374)
T ss_pred ccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCC--eEEEEEecchhcc--ccc--CCCCCEEEEEeceEEEec-c
Confidence 45999999998853 23 455588899987 4999998764321 234 899999999774 54332 2
Q ss_pred CceEEEEEeEEEEEccCCC
Q 011364 99 KQKVELKVNKIVLVGKSDP 117 (487)
Q Consensus 99 ~~~~el~~~~i~vls~~~~ 117 (487)
.+.+||.+.+-..+.+|..
T Consensus 250 ~g~~El~~~~~s~I~~~~~ 268 (374)
T PRK15491 250 SQEVEIQIGNHGSLRKTDR 268 (374)
T ss_pred CCCEEEEeCCCceEEECCc
Confidence 3479999877777777753
|
|
| >COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.90 E-value=6.4 Score=41.21 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=53.6
Q ss_pred CEEEEEEEEeeeec--CCCeEEEEEEcCCCCeeeEEEEeCCccchHh-HhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 30 LMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 30 ~~V~v~GwV~~iR~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
..++|.|+|...-. -|+..|+.+.|+.| .|-+++-.....|.. ++. |.+||.|.+.|.++... |.+
T Consensus 267 ~~~~v~g~v~~~p~~ieGghv~v~i~d~~G--~I~~~A~eptk~fr~~a~~--L~pGD~i~~~G~~~~~~-------~n~ 335 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEGGHVVVEITDGEG--EIGAVAFEPTKEFRELARK--LIPGDEITVYGSVKPGT-------LNL 335 (421)
T ss_pred cceEEEEEEecccEEeeCCEEEEEecCCCc--eEEEEEecccccchHHHHh--cCCCCEEEEecCccccc-------eeE
Confidence 45889998877633 58899999999997 477777654433433 567 99999999999987532 566
Q ss_pred eEEEEEcc
Q 011364 107 NKIVLVGK 114 (487)
Q Consensus 107 ~~i~vls~ 114 (487)
++++|+.-
T Consensus 336 ek~~v~~l 343 (421)
T COG1571 336 EKFQVLKL 343 (421)
T ss_pred EEEEEEEe
Confidence 66655443
|
|
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=80.87 E-value=3.3 Score=48.16 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.7
Q ss_pred CccceeccHHHHHHHHcCCCCcccc
Q 011364 451 PHAGFGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 451 P~~G~giGidRL~m~l~g~~~Irdv 475 (487)
++---|+|+|||++++-|.+|.=|+
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydt 263 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDT 263 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchh
Confidence 4555699999999999999998887
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 487 | ||||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 4e-55 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 4e-44 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 6e-39 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 2e-38 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 3e-38 | ||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 8e-38 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-37 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 2e-27 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 1e-22 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 1e-22 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 2e-18 | ||
| 1nnh_A | 294 | Hypothetical Protein From Pyrococcus Furiosus Pfu-1 | 1e-08 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 5e-08 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 6e-08 | ||
| 3p8t_A | 294 | Crystal Structure Of The Archaeal Asparagine Synthe | 6e-08 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 8e-08 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 1e-06 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 3e-06 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 2e-04 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 3e-04 |
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
|
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964 Length = 294 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A Length = 294 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 652 bits (1685), Expect = 0.0
Identities = 154/483 (31%), Positives = 235/483 (48%), Gaps = 58/483 (12%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD- 68
+K+ +VK + G + +AGWV T F+ + D + + +Q V+ +
Sbjct: 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNV 54
Query: 69 --AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKR 125
E +++ K + +S+ ++G V + + E+ V K+ ++ P ++
Sbjct: 55 VGEETFEKAKK--LGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQ 112
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
S E L HL RT A+ +V+ L A ++ ++G+ + PI+ EG
Sbjct: 113 ASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGAT 172
Query: 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245
F + +F+K A+L+ S QL E L
Sbjct: 173 LFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLEK 202
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305
V++ P+FRAE S T RHL EFW +E E A+ DL D M + Y+V+ L+ K+++
Sbjct: 203 VWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEI 262
Query: 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 365
+ F + E F ++SY +AI++L E WG DL ++ ER L
Sbjct: 263 EMFRDDLTT------LKNTEPPFPRISYDEAIDILQSKGVNVE----WGDDLGADEERVL 312
Query: 366 TEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPR-IGELIGGSQREERLEY 423
TEE F P V YPK IKAFYM+++ +D R V A DML P GE+IGGSQRE+ +
Sbjct: 313 TEE-FDR-PFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDK 370
Query: 424 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483
L R+ E ++ Y WYLDLR YGSVPH+GFGLG ERLV + +++IR A FPRTP
Sbjct: 371 LLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPA 430
Query: 484 SVE 486
+
Sbjct: 431 RLY 433
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 645 bits (1667), Expect = 0.0
Identities = 126/490 (25%), Positives = 208/490 (42%), Gaps = 63/490 (12%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
I D G ++ GW +R ++ F+E+ DGS QCV+
Sbjct: 17 PIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFG 67
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ--------KVELKVNKIVLVGKSDP-S 118
+ L T S+ I G + G +E++V + ++G+S
Sbjct: 68 KELCEPEKVKLL-TRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
I K S H+ R+ V ++R+ + + K++ +N F I P I +
Sbjct: 127 ENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKT 186
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
CEG F + +F +PA+LT S QL E+
Sbjct: 187 QCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216
Query: 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 298
+L + ++RAE S T RHLAE+ +E EL F +D + + V+ ++
Sbjct: 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVM 276
Query: 299 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKWGCDL 357
+ + N ++ + R F +++Y DAI+ + ++G D+
Sbjct: 277 AVHGDKIRKMNPHLK---------LPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDI 327
Query: 358 QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ-NDDGRTVAAMDMLVPRIGELIGGSQ 416
+ ER +T+E GCP+ + +P ++KAFYM + ++D+L+P +GE++GGS
Sbjct: 328 SEKPERQMTDEI--GCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSM 385
Query: 417 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476
R + L G LN D Y+WY R YGS PH G+GLG ERLV + G ++IR
Sbjct: 386 RIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVC 445
Query: 477 PFPRTPGSVE 486
+PR E
Sbjct: 446 LYPRYLERCE 455
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 643 bits (1662), Expect = 0.0
Identities = 120/470 (25%), Positives = 209/470 (44%), Gaps = 52/470 (11%)
Query: 23 EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+ + + + GW+ +R Q S+ F + DG+ +Q ++ + +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDALT--VN 60
Query: 82 TGASIWIQGNVVPSQGSKQK---VELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAH 136
T ++ I G + K+ EL + ++G + P + + S + + H
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS 196
L R A+ R+R A A + F G++ ++ P + + EG F +
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL------- 173
Query: 197 REAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAE 256
D+F + +FLT S QL ET L +V+ ++RAE
Sbjct: 174 -----------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAE 210
Query: 257 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 316
S T RHLAE+ +E E F L D M + V +L + + I
Sbjct: 211 KSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADE--EAKKLLEHINPKF 268
Query: 317 IDRLSTVAERDFVQLSYTDAIELLIKA--KKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 374
ER F+++ Y DAI+ L + + +F +G D+ ER++T+ P
Sbjct: 269 -----QPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI--NKP 321
Query: 375 VIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKL 433
++++ +P EIKAFYM+++ D ++D+L+P +GE++GGS R + + L +++
Sbjct: 322 ILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEI 381
Query: 434 NRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483
+ Y+WYLD R YG+ PH G+GLG ER + + T +IRD +PR G
Sbjct: 382 DPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVG 431
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 549 bits (1416), Expect = 0.0
Identities = 125/481 (25%), Positives = 209/481 (43%), Gaps = 57/481 (11%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+ I DV + G ++ AGWV LR FI + D + L Q V+ +
Sbjct: 2 YRSHFIADVTP------EYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKN 53
Query: 69 AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKR 125
+ + + +T + I ++G V + + + +EL +I L+ K+ P+ K +
Sbjct: 54 SSAFGISQE--LTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
+ + L R AV ++++ A + + GFI I +P I AS EG +
Sbjct: 112 ADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQ 171
Query: 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245
F V +F K AFL S QL E A +
Sbjct: 172 LFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVER 201
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDM 305
V+ P +RAE S+T HLAEF ++ E+AFAD D M L +V+ I + KE++
Sbjct: 202 VFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEEL 261
Query: 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 365
N + + +L YT+AIE+L + +G D+ + R L
Sbjct: 262 KILNYEPPE---------VKIPIKRLKYTEAIEILRSKGYNIK----FGDDIGTPELRIL 308
Query: 366 TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 425
EE + D+P + + FY + + ++ L+ + E++ GS R + E LE
Sbjct: 309 NEE-LKEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLE 367
Query: 426 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485
L + L +S+ ++L YG PHAGFG+G RL+ TG++++++ +PFPR +
Sbjct: 368 EALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRL 427
Query: 486 E 486
Sbjct: 428 T 428
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 547 bits (1411), Expect = 0.0
Identities = 129/471 (27%), Positives = 212/471 (45%), Gaps = 56/471 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGA 84
+ G + VAGWV ++ + F+ + D + +Q + K + +
Sbjct: 13 ELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSED 70
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKRVSREFLRTKAHLRPRT 141
+ ++G V + +K E+ KIV++ +++ P+ K + + + R
Sbjct: 71 VVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRR 130
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAE 201
A+ ++R+++ A FF ENGFI I +P I A+ EG E F +
Sbjct: 131 PEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM------------ 178
Query: 202 SPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNT 260
+FE+ AFL S QL + A+ L VY P FRAE NT
Sbjct: 179 ------------------KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220
Query: 261 SRHLAEFWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
+RHL E W I+ E+AF D ++ M+ + + + Y+ ++ +++D N +E+
Sbjct: 221 TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEP---- 276
Query: 320 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVI 376
+ F ++SY A+E+L K+ WG D+ +E ER L + E
Sbjct: 277 -----KLPFPRVSYDKALEILGDLGKEIP----WGEDIDTEGERLLGKYMMENENAPLYF 327
Query: 377 VSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR 435
+ YP E K FY M+ ++ A D+ R E+ G QRE R + L ++ E LN
Sbjct: 328 LYQYPSEAKPFYIMKYDNKPEICRAFDLEY-RGVEISSGGQREHRHDILVEQIKEKGLNP 386
Query: 436 DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486
+S+ +YL YG PH GFGLG ERL++ + NIR+ I FPR +
Sbjct: 387 ESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 437
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 504 bits (1300), Expect = e-178
Identities = 112/484 (23%), Positives = 200/484 (41%), Gaps = 72/484 (14%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
++ + D+K VG + + G++ R + F+ + D S + +Q V
Sbjct: 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLKL 52
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ----KKRV 126
+++ ++G VV + + +E++ ++ ++ + P++ + R
Sbjct: 53 ---------PLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRA 103
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ + L ++ R A +V+ AL ++ F I +P + + EG
Sbjct: 104 NPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL 163
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246
F V D+FEK A+L S QL + V
Sbjct: 164 FGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFERV 193
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDM 305
Y P +R E +TSRHL E+ ++ E+ F AD +D M A L ++ L+ +++
Sbjct: 194 YEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEI 253
Query: 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 365
+D +L++ +A +L K++ G DL E ER L
Sbjct: 254 RLLGATWP---------SFPQDIPRLTHAEAKRIL---KEELG--YPVGQDLSEEAERLL 299
Query: 366 TE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 422
E E +G + V+ YP+ ++ FY +DG T + D+L + E+ G QR R E
Sbjct: 300 GEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTT-RSFDLLFRGL-EITSGGQRIHRYE 357
Query: 423 YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482
L L ++ +++ YL++ YG PH GF +G ERL Q G+ N+R A FPR
Sbjct: 358 ELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDR 417
Query: 483 GSVE 486
+
Sbjct: 418 HRLT 421
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 474 bits (1222), Expect = e-168
Identities = 72/355 (20%), Positives = 128/355 (36%), Gaps = 71/355 (20%)
Query: 135 AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP 194
+ + ++ + FF + GF W+ II+
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPIT--------------- 46
Query: 195 SSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTF 253
+G+ + + LT S L+ + A L ++ P
Sbjct: 47 --------DPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNI 98
Query: 254 RAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 311
R E+ + RH EF ++ E+ A ++D M + + R + +
Sbjct: 99 RLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK-- 156
Query: 312 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFG 371
F Y++ +E ++G D ++ E
Sbjct: 157 ---------------RFEVFEYSEVLE-------------EFGSDEKASQEM-------- 180
Query: 372 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDE 430
P + + P+E FY R+ D D+++P GE+ G +RE E + ++ +
Sbjct: 181 EEPFWIINIPRE---FYDREVDG--FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRK 235
Query: 431 LKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484
LN DS+ YL++ G + P AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 236 AGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 462 bits (1191), Expect = e-160
Identities = 111/510 (21%), Positives = 206/510 (40%), Gaps = 76/510 (14%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q ++ F+ + + L +Q ++ +
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKA 73
Query: 68 DAEGY---DQVKS-GLITTGASIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPS 118
+ EG + VK G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 74 NKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA 133
Query: 119 YPIQKKRVSR---------------EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163
PI + SR + + RT T A+ R++ + ++
Sbjct: 134 LPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223
F + +P + + EG F V +F+
Sbjct: 194 TKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TYFK 223
Query: 224 KPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD 282
A+L S Q N + A VY GP FRAENSNT RH+ EF ++ E+AF + +
Sbjct: 224 GKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE 283
Query: 283 -MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI 341
+ + ++ + +++ ++ + V+L+Y + IE+L
Sbjct: 284 VLDTLSELFVFIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGIEMLR 340
Query: 342 KAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 398
A K+ DL +E+E++L + + + I+ +P EI+ FY +
Sbjct: 341 AAGKEIG----DFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKY 396
Query: 399 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS--YWWYLDLRHYGSVPHAGFG 456
+ R E++ G+QR L+ R+ L+ + Y D YG PHAG G
Sbjct: 397 SNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGG 456
Query: 457 LGFERLVQFATGVENIRDAIPFPRTPGSVE 486
+G ER+V F ++NIR A FPR P +
Sbjct: 457 IGLERVVMFYLDLKNIRRASLFPRDPKRLR 486
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 408 bits (1050), Expect = e-138
Identities = 91/403 (22%), Positives = 153/403 (37%), Gaps = 47/403 (11%)
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR 149
+ K + + + + + +VS++ L RT T A+ R
Sbjct: 186 AKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFR 245
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+++A +F F+ I +P + EG F V
Sbjct: 246 IQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV-------------------- 285
Query: 210 TKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFW 268
+F++ A+L S QL + V+ GP FRAENSNT RHL EF
Sbjct: 286 ----------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFE 335
Query: 269 MIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERD 327
++ E+ + + + ++ I +++ + R
Sbjct: 336 GLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPF------EDLIYRP 389
Query: 328 FVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEI 384
F++L+Y +AIE+L + + D + E L E + I+ +P I
Sbjct: 390 FLRLTYKEAIEMLRASGETIG----DYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAI 445
Query: 385 KAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 443
+ FY M DD + D+ V E+ G+QR E+L R E ++ + Y++
Sbjct: 446 RPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIE 504
Query: 444 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486
+GS PHAG G+G ER+ G+ NIR FPR P +
Sbjct: 505 SFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 447 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 523 YGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 447 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481
YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 517 YGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 6e-05
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 17/169 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L +Q V + Y + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVR 70
Query: 88 IQGNVVP-SQGSKQ----KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLR--- 138
+G V + + + +VE++++ + ++ ++ P +P+ E LR
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKY 130
Query: 139 ----PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R R+R+ + A F GF+ + +P +T S EGA
Sbjct: 131 RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 45/260 (17%), Positives = 77/260 (29%), Gaps = 56/260 (21%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-ED 304
V+ +FR E H EF M+E D+ M L ++ +LD E
Sbjct: 112 VFQLCRSFRNEEMGR-YHNPEFTMLEWYRPHYDMYRLMN-EVDDL---LQQVLDCPAAES 166
Query: 305 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEH-E 362
+ + ++ ID + T E+ K + D L
Sbjct: 167 LSYQQAFLRYLEID---------PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFT 217
Query: 363 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE----LIGGS--- 415
+ P V +P + +D R+ E G
Sbjct: 218 FGVEPNIGKEKPTFVYHFPASQASLAQISTED-----------HRVAERFEVYYKGIELA 266
Query: 416 -----------QREERLE-----YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGF 459
Q++ R E L + ++++ ++ G +G LG
Sbjct: 267 NGFHELTDAREQQQ-RFEQDNRKRAARGLPQHPIDQN----LIEALKVGMPDCSGVALGV 321
Query: 460 ERLVQFATGVENIRDAIPFP 479
+RLV A G E + + I F
Sbjct: 322 DRLVMLALGAETLAEVIAFS 341
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 5e-07
Identities = 68/276 (24%), Positives = 102/276 (36%), Gaps = 74/276 (26%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
VY G FR E +T RH EF M+E A+AD +D M + ++ +L K
Sbjct: 245 VYEIGRVFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQY 303
Query: 303 --EDMDFFNTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 359
+D W ++D + DF Q+S +A EL + + + +G
Sbjct: 304 GEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFG----- 358
Query: 360 EHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE 410
++ E F P + +P EI A ++N D PR +
Sbjct: 359 ----HIVNEFFEQKVEDKLIQPTFIYGHPVEISPLA---KKNPDD----------PRFTD 401
Query: 411 ----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLD 443
I G QR+ E L+ R +DE D +L+
Sbjct: 402 RFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDE-----D----FLE 452
Query: 444 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 479
YG P G G+G +RLV T +IRD + FP
Sbjct: 453 ALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 9e-07
Identities = 89/563 (15%), Positives = 156/563 (27%), Gaps = 197/563 (34%)
Query: 49 FIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS--IWI----QGNVVPSQGSKQKV 102
F++ D + +M + S E + S +G W Q +V ++ V
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV-----QKFV 83
Query: 103 E--LKVNKIVLVGK-----SDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR------ 149
E L++N L+ PS + R+ L + + N V+R
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLK 139
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+R AL + + I + G+G+ T + A + + +
Sbjct: 140 LRQAL-----LELRPAKNVLIDGVL-------GSGK----TWV------ALDVCLSYKVQ 177
Query: 210 TK-DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYT-FGPTFRAENSNTSRHLAEF 267
K D I W L + + ET L + P + + + ++S
Sbjct: 178 CKMDFKIFW----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN----- 222
Query: 268 WMIEPELAFADLKDDMACATAYLQYVVRY-----ILDNC--KEDMDFFN-------TWIE 313
+L ++ ++ L Y +L N + + FN T
Sbjct: 223 ----IKLRIHSIQAELR----RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 314 KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGG 372
K + D LS +S L + K L+K+ C Q L E
Sbjct: 275 KQVTDFLSAATTT---HISLDHHSMTLTPDEVK-SLLLKYLDCRPQD-----LPREVLTT 325
Query: 373 CPVIVS-------------DY---------------------PKEIKAFYMR----QND- 393
P +S D P E + + R
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 394 ------------DGRTVAAMDMLVPRIGELIGGS----QREERLEYLEGRLDELK----- 432
D M ++ +L S Q +E + ELK
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 433 ---LNR----------------------DSYW-WYLDLRHYGSVPHAGFGLGFERL---V 463
L+R D Y+ ++ H ++ H F +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIEHPERMTLFRMVFLDF 500
Query: 464 QFATGVEN-IRDAIPFPRTPGSV 485
+F +E IR GS+
Sbjct: 501 RF---LEQKIRHDSTAWNASGSI 520
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-06
Identities = 74/480 (15%), Positives = 140/480 (29%), Gaps = 149/480 (31%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE----FLRTKA-HLRPRTNTF---- 144
PS ++ +E + +++ +D K VSR LR LRP N
Sbjct: 105 PSMMTRMYIE-QRDRL----YNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 145 -GA-----VARVRNALAYATHKFFQENGFIWIS-SPIITASDCEGAGEQFCVTTLIPSSR 197
G+ V L+Y + W++ + ++ + P+
Sbjct: 159 LGSGKTWVALDV--CLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWT 214
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAF---LTVSGQLNAETYATALSNVY------T 248
++ I + + + + L V L NV
Sbjct: 215 SRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLV------------LLNVQNAKAWNA 261
Query: 249 FGP------TFR------AENSNTSRHLA---EFWMIEPE-----LA-FADLKDDM---- 283
F T R ++ T+ H++ + P+ L + D +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 284 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA 343
T + I ++ ++ + ++ W + D+L+T+ E L + E
Sbjct: 322 VLTTNPR--RLSIIAESIRDGLATWDNW-KHVNCDKLTTIIESSLNVL---EPAEY---- 371
Query: 344 KKKFEFL------VK---------WGCDLQSEHERYLTEEAFGGCPVIVSDYPKE----I 384
+K F+ L W D+ + + +V PKE I
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIW-FDVIKSDVMVVVNKLHKYS--LVEKQPKESTISI 428
Query: 385 KAFYMRQNDDGRTVAAM-----------------DMLVPR--------IGELIGGSQREE 419
+ Y+ A+ D++ P IG + + E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 420 RLE-----YLEGRLDELKLNRDSYWWY---------LDLRHYGS--VPHAGFGLGFERLV 463
R+ +L+ R E K+ DS W L+ Y + +ERLV
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLV 545
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 54/276 (19%), Positives = 81/276 (29%), Gaps = 69/276 (25%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
V+ FR E + RH EF M+E A+ D + M ++ L
Sbjct: 275 VFEINRNFRNEGVSP-RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQY 333
Query: 303 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK-FEFLVKWGCDLQS 359
++D + I + A +D L + K+ + +
Sbjct: 334 QGRELDLAQPFHRLTITQAIQKYAPSYTDGQL-SDDAFLRSELKRLGVDVTQPAFLNAGI 392
Query: 360 EHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE 410
L F P + DYP E+ A R++D I E
Sbjct: 393 GA---LQLALFEETAEAQLWEPTFIIDYPIEVSPLA---RESDTV----------AGITE 436
Query: 411 ----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLD 443
I G Q + +E + D D Y+
Sbjct: 437 RFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDA-----D----YIR 487
Query: 444 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 479
YG P G G+G +RLV T IRD + FP
Sbjct: 488 ALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 60/271 (22%), Positives = 93/271 (34%), Gaps = 63/271 (23%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 302
V+ FR E + RH EF M+E +A+AD D + + + + + +L K
Sbjct: 254 VFEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 312
Query: 303 --EDMDFFNTWIEKGIIDRLSTVA-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 359
DF + + + + + E D L DA + L + WG
Sbjct: 313 GEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGL---- 367
Query: 360 EHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGEL- 411
+ E F P +++YP E+ R + + + R E
Sbjct: 368 ---GRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPE-------ITDRF-EFF 416
Query: 412 IGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYG 448
IGG Q E E + + DE D Y+ YG
Sbjct: 417 IGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDE-----D----YVTALEYG 467
Query: 449 SVPHAGFGLGFERLVQFATGVENIRDAIPFP 479
P AG G+G +R++ T IRD I FP
Sbjct: 468 LPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.9 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 99.87 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.72 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.66 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.57 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 99.51 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 99.39 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 98.97 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 98.61 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 98.59 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.47 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.47 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.46 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.44 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 98.21 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 98.17 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 98.16 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.14 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 98.11 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 98.1 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 98.05 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 98.01 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 98.0 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 98.0 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 97.92 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 97.91 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 97.9 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 97.89 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.86 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 97.85 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 97.83 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.82 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 97.81 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.8 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.77 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 97.77 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.72 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.72 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.71 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.71 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.67 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 97.63 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.62 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 97.59 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.56 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 97.5 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.46 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 97.45 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 96.99 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 96.68 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 96.65 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 96.65 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 96.63 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 96.6 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 96.56 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 96.44 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 96.32 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 96.22 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 95.83 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 95.79 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 95.51 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 95.36 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 95.3 | |
| 3au7_A | 402 | TIAS, putative uncharacterized protein; ATP hydrol | 94.76 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 94.75 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 94.5 | |
| 3kf8_A | 220 | Protein STN1; OB fold; 2.40A {Candida tropicalis m | 94.03 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 92.75 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 92.43 | |
| 2k75_A | 106 | Uncharacterized protein TA0387; closed beta barrel | 92.11 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 91.64 | |
| 3kdf_A | 121 | Replication protein A 14 kDa subunit; wheat GERM c | 90.92 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 90.68 | |
| 3fhw_A | 115 | Primosomal replication protein N; PRIB BPR162 X-RA | 90.37 | |
| 4gop_A | 114 | Putative uncharacterized protein; OB fold, ssDNA b | 88.93 | |
| 2pi2_E | 142 | Replication protein A 14 kDa subunit; FULL-length | 84.1 | |
| 1jmc_A | 246 | Protein (replication protein A (RPA)); human ssDNA | 82.26 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 81.81 | |
| 1sr3_A | 136 | APO-CCME; OB fold, beta barrel, flexible C-termina | 80.9 | |
| 3k8a_A | 103 | Putative primosomal replication protein; beta-barr | 80.51 |
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-104 Score=828.90 Aligned_cols=424 Identities=29% Similarity=0.488 Sum_probs=382.0
Q ss_pred ccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhHhccCCCCCcE
Q 011364 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSGLITTGAS 85 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~~~~~L~~gd~ 85 (487)
.++++|+||.+. +.|+.|+|+|||+++|.+||++|++|||++| .||||++++.. .|+.++. |+.||+
T Consensus 2 ~rt~~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~~~~ 71 (438)
T 3nem_A 2 YRTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDG--IVQITAPKKKVDPELFKLIPK--LRSEDV 71 (438)
T ss_dssp CCSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSCHHHHHHGGG--CCTTCE
T ss_pred ceEEEHHHcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999875 6799999999999999999999999999997 49999997642 3666777 999999
Q ss_pred EEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccc---cChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhh
Q 011364 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF 162 (487)
Q Consensus 86 V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff 162 (487)
|.|+|+|.++++..+++||++++++|||+|..++|++.+. ++.+.++++||||+|++.++++|++||++++++|+||
T Consensus 72 V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~ 151 (438)
T 3nem_A 72 VAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFF 151 (438)
T ss_dssp EEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887779999999999999998778887554 6788888999999999999999999999999999999
Q ss_pred hcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH-HHhc
Q 011364 163 QENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYAT 241 (487)
Q Consensus 163 ~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~ 241 (487)
.++||+||+||+|+++++||+++.|.+ +||+.++||+|||||||| ++++
T Consensus 152 ~~~gF~EVeTPiL~~~~~eg~~~~f~~------------------------------~~~~~~~yL~~Spql~~q~l~~~ 201 (438)
T 3nem_A 152 HENGFIEIHTPKIIATATEGGTELFPM------------------------------KYFEEDAFLAQSPQLYKQIMMAS 201 (438)
T ss_dssp HHTTCEECCCCSEESSCSSCSSSCCEE------------------------------EETTEEEEECSCSHHHHHHGGGT
T ss_pred HHCCcEEEeCCEEecCCCCCCccceeE------------------------------eeCCccEEEecChHHHHHHHHhc
Confidence 999999999999999999999998875 477899999999999997 5679
Q ss_pred cCCceEEEecccccCCCCCCcccccccceeeEEccCC-HHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhh
Q 011364 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRL 320 (487)
Q Consensus 242 g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 320 (487)
|++||||||||||||+++++||||||||||||++|+| ++|+|+++|+||+++++.+.+.+..++.+.+.. +
T Consensus 202 g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~--------l 273 (438)
T 3nem_A 202 GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFE--------L 273 (438)
T ss_dssp TCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCC--------C
T ss_pred CCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccc--------c
Confidence 9999999999999999988999999999999999999 999999999999999999988776555544331 1
Q ss_pred hhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccc---cCccEEEEecCCcCccccccccC-CCC
Q 011364 321 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQND-DGR 396 (487)
Q Consensus 321 ~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~---~~~p~fi~~~P~~~~pf~~~~~~-~~~ 396 (487)
..+..||+|+||.||++++++.|.+ ..||.++++++|++|.+.+. ..+|+||+|||.+++|||++.++ +++
T Consensus 274 -~~~~~pf~rity~eai~~l~~~g~~----~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~ 348 (438)
T 3nem_A 274 -EEPKLPFPRVSYDKALEILGDLGKE----IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPE 348 (438)
T ss_dssp -CCCCSSCCEEEHHHHHHHHHHTTCC----CCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTT
T ss_pred -ccCCCCceEEEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCC
Confidence 1245689999999999999887754 46899999999998876441 13899999999999999887665 457
Q ss_pred ceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011364 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476 (487)
Q Consensus 397 ~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~ 476 (487)
+++|||||++| +||+||++|++|+++|++++++.|++++.++|||+|++||+|||||||||||||+|++||.+|||||+
T Consensus 349 ~~~rfdL~~~G-~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi 427 (438)
T 3nem_A 349 ICRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVI 427 (438)
T ss_dssp BBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGS
T ss_pred ceEEEEEEECC-EEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcc
Confidence 89999999999 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 011364 477 PFPRTPGSVE 486 (487)
Q Consensus 477 ~FPr~~~~~~ 486 (487)
+|||+++||.
T Consensus 428 ~FPr~~~rl~ 437 (438)
T 3nem_A 428 LFPRDRRRLT 437 (438)
T ss_dssp SSCCCSSCCC
T ss_pred cCCCCccCCC
Confidence 9999999984
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-104 Score=825.64 Aligned_cols=425 Identities=30% Similarity=0.534 Sum_probs=365.4
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCc-cchHhHhccCCCCCcEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIW 87 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~-~~~~~~~~~~L~~gd~V~ 87 (487)
.++.|+|+. ++.|+.|+|+|||+++|++| +++|++|||++|. ||||++.+. .....+.. |+.||+|.
T Consensus 18 ~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~--l~~g~~V~ 86 (456)
T 3m4p_A 18 IVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKL--LTRECSLE 86 (456)
T ss_dssp CCEECCSTT-------CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTT--CCTTCEEE
T ss_pred eEEEhhhhh-------hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCcc--EEEEEecccchhhHHhhc--CCCccEEE
Confidence 457788883 37899999999999999996 6999999999974 999999743 22223456 99999999
Q ss_pred EEeeEeecCCCC--------ceEEEEEeEEEEEccCCCCCCC-CccccChhhhhhcccccCCChhhHHHHHHHHHHHHHH
Q 011364 88 IQGNVVPSQGSK--------QKVELKVNKIVLVGKSDPSYPI-QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (487)
Q Consensus 88 V~G~~~~~~~~~--------~~~el~~~~i~vls~~~~~~p~-~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~i 158 (487)
|+|+|++++.+. +++||++++++||++|..++|- ..+.++.++++++||||+|++.++++|++||+|++++
T Consensus 87 V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~i 166 (456)
T 3m4p_A 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYF 166 (456)
T ss_dssp EEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHH
Confidence 999999886532 6899999999999999743221 1234678888899999999999999999999999999
Q ss_pred HHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHH
Q 011364 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238 (487)
Q Consensus 159 R~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~l 238 (487)
|+||.++||+||+||+|+++++||+++.|.+ +||+.++||+||||||||+
T Consensus 167 R~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~------------------------------~~~~~~~~L~~SpqL~lq~ 216 (456)
T 3m4p_A 167 RKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216 (456)
T ss_dssp HHHHHHTTCEECCCCSEEC------CCCCEE------------------------------EETTEEEEECSCCHHHHHT
T ss_pred HHHHHhCCCEEEeCCeeecCCCCCccccccc------------------------------cccCCCcccccCHHHHHHH
Confidence 9999999999999999999999999998864 6899999999999999987
Q ss_pred HhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhh
Q 011364 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 318 (487)
Q Consensus 239 l~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (487)
+++|++||||||||||||+++++||||||||||||++|+|++|+|+++|+||+++++.+.+.+...+.....
T Consensus 217 l~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~-------- 288 (456)
T 3m4p_A 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNP-------- 288 (456)
T ss_dssp THHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCc--------
Confidence 667899999999999999998999999999999999999999999999999999999988665332211110
Q ss_pred hhhhhhcCCCcccCHHHHHHHHHHhccccc-cccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccC-CCC
Q 011364 319 RLSTVAERDFVQLSYTDAIELLIKAKKKFE-FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGR 396 (487)
Q Consensus 319 ~l~~~~~~~~~~it~~ea~~~l~~~~~~~~-~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~ 396 (487)
.+ .....||+|+||.||++++++.|++.+ ....||.+++.++|+++.+.+ . +|+||+|||.+++|||++.++ |+.
T Consensus 289 ~~-~~~~~pf~rity~eAi~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~P~fv~~yP~~~~pfy~k~~~~dp~ 365 (456)
T 3m4p_A 289 HL-KLPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI-G-CPIFMIHFPSKMKAFYMSKVPGHPD 365 (456)
T ss_dssp TC-CCCCSSCEEEEHHHHHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCEETTEEE
T ss_pred cc-ccCCCCCeEeeHHHHHHHHHHcCCCccccCcchHHHHHHHHHHHHHHHh-C-ceEEEECCCchhCccccccCCCCCC
Confidence 00 123568999999999999998886533 235799999999999998765 4 899999999999999987665 456
Q ss_pred ceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccc
Q 011364 397 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 476 (487)
Q Consensus 397 ~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~ 476 (487)
+++|||||++|+|||+||++|++|+++|.+++++.|++++.++|||++++||+|||||||||||||+|++||.+|||||+
T Consensus 366 ~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi 445 (456)
T 3m4p_A 366 LTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVC 445 (456)
T ss_dssp EECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGS
T ss_pred eeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 011364 477 PFPRTPGSVE 486 (487)
Q Consensus 477 ~FPr~~~~~~ 486 (487)
+|||++++|.
T Consensus 446 ~FPr~~~r~~ 455 (456)
T 3m4p_A 446 LYPRYLERCE 455 (456)
T ss_dssp SSCBBTTBCC
T ss_pred ccCCCCCCCC
Confidence 9999999985
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-101 Score=808.18 Aligned_cols=422 Identities=29% Similarity=0.559 Sum_probs=364.9
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCc-cchHhHhccCCCCCcEEEEEe
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQG 90 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~-~~~~~~~~~~L~~gd~V~V~G 90 (487)
+|+|+.+ +.|+.|+|+|||+++|++| +++|++|||++|. ||||++.+. ..|+.. . |+.||+|.|+|
T Consensus 2 ~i~~~~~-------~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~-~--l~~~~~v~v~G 69 (435)
T 2xgt_A 2 KIRDLVK-------HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDAL-T--VNTECTVEIYG 69 (435)
T ss_dssp CGGGGGG-------GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCE--EEEEEEGGGGSSHHHH-H--CCTTCEEEEEE
T ss_pred chhhhhh-------cCCCEEEEEEEEEEecccCCCcEEEEEEECCce--EEEEECCcchhHHHHh-c--CCCCCEEEEEE
Confidence 4666642 6789999999999999995 7999999999974 999998542 234443 5 99999999999
Q ss_pred eEeecC---CCCceEEEEEeEEEEEccCCCC--CCCCccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcC
Q 011364 91 NVVPSQ---GSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (487)
Q Consensus 91 ~~~~~~---~~~~~~el~~~~i~vls~~~~~--~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (487)
+|++++ ++++++||++++++||+++.+. +|++++.++.+.++++||||+|++.++++|++||+|++++|+||.++
T Consensus 70 ~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~ 149 (435)
T 2xgt_A 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNA 149 (435)
T ss_dssp EEEECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999977 4457899999999999986432 57777778888888999999999999999999999999999999999
Q ss_pred CeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCc
Q 011364 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (487)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~k 245 (487)
||+||+||+|++++++|+++.|.+ +||++++||+||||||||++++|++|
T Consensus 150 gFlEVeTPiL~~s~~eG~~~~F~~------------------------------~~~g~~~~L~~SpqLylq~l~~g~~r 199 (435)
T 2xgt_A 150 GYVEVAPPTLVQTQVEGGSTLFNL------------------------------DYFGEQSFLTQSSQLYLETCIPTLGD 199 (435)
T ss_dssp TCEECCCCSEESCCSSCTTSCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHCS
T ss_pred CCEEEECCeEeeccCCCchhceee------------------------------ccCCcccccCCChHHHHHHhhhccCc
Confidence 999999999999999999998865 57899999999999999876678999
Q ss_pred eEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccc--cccccccccchhhhhhhhh
Q 011364 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED--MDFFNTWIEKGIIDRLSTV 323 (487)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~l~~~ 323 (487)
|||||||||||+++++||+|||||||||++|+|++|+|+++|+||+++++.+.+.+..+ +..... .+ ..
T Consensus 200 vfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~--------~~-~~ 270 (435)
T 2xgt_A 200 VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINP--------KF-QP 270 (435)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHST--------TC-CC
T ss_pred eEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhccc--------cc-cc
Confidence 99999999999998899999999999999999999999999999999999987654211 110000 00 01
Q ss_pred hcCCCcccCHHHHHHHHHHhccccc--cccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccC-CCCceEE
Q 011364 324 AERDFVQLSYTDAIELLIKAKKKFE--FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAA 400 (487)
Q Consensus 324 ~~~~~~~it~~ea~~~l~~~~~~~~--~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~ 400 (487)
...||+|+||.||++++++.+...+ ....||.++...+|++|.+.+ . +|+||+|||.+++|||++.++ |+.+++|
T Consensus 271 ~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~p~fv~d~P~~~~~f~a~~~~~~p~~~~~ 348 (435)
T 2xgt_A 271 PERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI-N-KPILLNRFPSEIKAFYMQRDAQDNTLTES 348 (435)
T ss_dssp CCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCBCSSCTTBBSE
T ss_pred cCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhc-C-CcEEEECCChhhCcccCCCCCCCcCeEEE
Confidence 2358999999999999988765432 235789999999999987765 3 799999999999999988765 4568899
Q ss_pred EEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCC
Q 011364 401 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480 (487)
Q Consensus 401 fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr 480 (487)
||||++|+|||+|||+|+||+++|++++++.|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+|||
T Consensus 349 fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdvi~FPr 428 (435)
T 2xgt_A 349 VDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPR 428 (435)
T ss_dssp EEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCC
T ss_pred EEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhEecccC
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 011364 481 TPGSVEF 487 (487)
Q Consensus 481 ~~~~~~~ 487 (487)
++++|..
T Consensus 429 ~~~~~~p 435 (435)
T 2xgt_A 429 FVGRCVP 435 (435)
T ss_dssp BTTBCCC
T ss_pred CcCCCCC
Confidence 9999863
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-101 Score=802.44 Aligned_cols=423 Identities=30% Similarity=0.475 Sum_probs=381.9
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
++++|++|.+. +.|+.|+|+|||+++|++||++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~--l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTPE------YDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKNSSAFGISQE--LTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChHHHHHHHh--CCCCCEEEEE
Confidence 57889999764 68999999999999999999999999999974 99999876555777777 9999999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccc---cChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCC
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~---~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~g 166 (487)
|+|.+++++++++||++++++|||+|..++|++.+. ++.+.++++||||+|++.+++++++||++++++|+||.++|
T Consensus 73 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~g 152 (429)
T 1wyd_A 73 GIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEG 152 (429)
T ss_dssp EEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988889999999999999997678987765 78888889999999999999999999999999999999999
Q ss_pred eEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCce
Q 011364 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246 (487)
Q Consensus 167 F~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kv 246 (487)
|+||+||+|+++++||++++|.+ +|+++++||+||||+|+|++++|++||
T Consensus 153 F~eV~TP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~L~~Spql~~~~~~~g~~rv 202 (429)
T 1wyd_A 153 FIEIFTPKIIASATEGGAQLFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVERV 202 (429)
T ss_dssp CEECCCCSEESSCSSTTCCCCEE------------------------------EETTEEEEECSCCHHHHHHHHHHHSEE
T ss_pred CEEEECCEEEeeCCCCCceeEEE------------------------------ecCCceEEecCCcHHHHHHHHhCcCce
Confidence 99999999999999999999975 467889999999999997788899999
Q ss_pred EEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcC
Q 011364 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 326 (487)
Q Consensus 247 feI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 326 (487)
||||||||+|++++.||+|||||||||++|.|++|+|+++|+|++++++.+.+++..++.+.+... . .++.
T Consensus 203 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~--------~-~l~~ 273 (429)
T 1wyd_A 203 FEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEP--------P-EVKI 273 (429)
T ss_dssp EEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCC--------C-CCCS
T ss_pred EEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhccccc--------c-cCCC
Confidence 999999999999888999999999999999999999999999999999999887766665543211 0 1246
Q ss_pred CCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccC-CCCceEEEEEEe
Q 011364 327 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLV 405 (487)
Q Consensus 327 ~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~ 405 (487)
||+|+||.||++++++.|.+ ..||.++++..|++|.+.+.. +|+||+|||.+++|||++.++ ++.++++||||+
T Consensus 274 pf~rity~eA~~~~~~~g~~----~~~~~~l~~~~e~~l~~~~~~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~ 348 (429)
T 1wyd_A 274 PIKRLKYTEAIEILRSKGYN----IKFGDDIGTPELRILNEELKE-DLYFIVDWPSDARPFYTKSKSENPELSESFDLIY 348 (429)
T ss_dssp SCEEEEHHHHHHHHHHSSCC----CCTTSCCCHHHHHHHHHHHCC-SEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEE
T ss_pred CccEEEHHHHHHHHHhcCCC----cccCcccCcHHHHHHHHHhcc-CCEEEecCChhhChhhCCcCCCCCCeEEEEEEEE
Confidence 89999999999999877643 468889999999998776543 699999999999999887665 456899999999
Q ss_pred cCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 406 PRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 406 ~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
+|+ ||+|||+|+||+++|+++++++|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+||+++++|
T Consensus 349 ~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~ 427 (429)
T 1wyd_A 349 KFL-EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRL 427 (429)
T ss_dssp TTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCBTTBC
T ss_pred CCE-EEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCCCCCC
Confidence 998 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 011364 486 EF 487 (487)
Q Consensus 486 ~~ 487 (487)
.+
T Consensus 428 ~p 429 (429)
T 1wyd_A 428 TP 429 (429)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-100 Score=806.64 Aligned_cols=426 Identities=26% Similarity=0.393 Sum_probs=352.4
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc----cchHhHhccCCCCCcE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGAS 85 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~----~~~~~~~~~~L~~gd~ 85 (487)
..+.|++|.. ++.|+.|+|+|||+++|.+||++|++|||++| +||||++.+. ..++.++. |+.||+
T Consensus 49 ~~~~i~~l~~------~~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~es~ 118 (548)
T 3i7f_A 49 KYTEIEELVP------AMAEKTVTIRARVQAVRGKGNMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQK--ISAESI 118 (548)
T ss_dssp CBCCGGGCSG------GGTTCEEEEEEEEEEEEECSSEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHT--CCTTEE
T ss_pred ceEEhhhcch------hcCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhC--CCCCCE
Confidence 4567888875 37899999999999999999999999999996 6999998632 12344667 999999
Q ss_pred EEEEeeEeecCC-----CCceEEEEEeEEEEEccCCCCCCCCccc-----------------------------------
Q 011364 86 IWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR----------------------------------- 125 (487)
Q Consensus 86 V~V~G~~~~~~~-----~~~~~el~~~~i~vls~~~~~~p~~~~~----------------------------------- 125 (487)
|.|+|+|++++. ..+++||++++|+|||+|..++|++.++
T Consensus 119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (548)
T 3i7f_A 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLT 198 (548)
T ss_dssp EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-----------------
T ss_pred EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccc
Confidence 999999999864 2578999999999999998778887321
Q ss_pred -----------------------cChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCC
Q 011364 126 -----------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182 (487)
Q Consensus 126 -----------------------~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg 182 (487)
.+.+...++||||||++.++++|++||++++++|+||.++||+||+||+|++++|||
T Consensus 199 ~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~eg 278 (548)
T 3i7f_A 199 KRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEG 278 (548)
T ss_dssp --------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC------
T ss_pred cccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCC
Confidence 234445589999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhH-HHHhccCCceEEEecccccCCCCCC
Q 011364 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTS 261 (487)
Q Consensus 183 ~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~ 261 (487)
++++|.+ +||+.++||+||||||| +++++|++||||||||||||+++|+
T Consensus 279 ga~~F~v------------------------------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~ 328 (548)
T 3i7f_A 279 GSNIFEV------------------------------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTR 328 (548)
T ss_dssp -------------------------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSS
T ss_pred CcceeEE------------------------------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCC
Confidence 9999975 57789999999999998 5889999999999999999999899
Q ss_pred cccccccceeeEEccC-CHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHH
Q 011364 262 RHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 340 (487)
Q Consensus 262 rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l 340 (487)
||||||||||||++|. +++++|+++|+||+++++.+.+.+..++..+...... ..+ .-.||+++||.||++++
T Consensus 329 RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~---~~~---~~~pf~rit~~eai~~l 402 (548)
T 3i7f_A 329 RHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPF---EDL---IYRPFLRLTYKEAIEML 402 (548)
T ss_dssp SCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCC---CCC---CCCSCEEEEHHHHHHHH
T ss_pred CcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCc---ccc---ccCCcceeEHHHHHHHH
Confidence 9999999999999998 7999999999999999999987776555443221110 001 11689999999999999
Q ss_pred HHhccccccccccccccchHHHhhhhh---ccccCccEEEEecCCcCccccccccC-CCCceEEEEEEecCeeeeechhH
Q 011364 341 IKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQ 416 (487)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~El~~G~~ 416 (487)
++.|.+ ..|+.|++.++|++|.+ ..+...++||+|||.+++|||++.++ |+.+++|||||++| +||+||++
T Consensus 403 ~~~g~~----~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei~nG~~ 477 (548)
T 3i7f_A 403 RASGET----IGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQ 477 (548)
T ss_dssp HHTTCC----CCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEE
T ss_pred HHcCCC----CCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECC-EEEeeCee
Confidence 988765 35788999999987754 23332356778999999999977654 66789999999999 59999999
Q ss_pred hhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 417 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 417 r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|++|+++|++++++.|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+|++|.
T Consensus 478 rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~ 547 (548)
T 3i7f_A 478 RIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547 (548)
T ss_dssp ECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred ecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-99 Score=792.42 Aligned_cols=425 Identities=36% Similarity=0.611 Sum_probs=384.2
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhHhccCCCCCcEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~~~~~L~~gd~V 86 (487)
++++|++|... +.|+.|+|+|||+++|++||++|++|||++|. ||||++++. ..|+.++. |+.||+|
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKPE------LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKK--LGRESSV 72 (434)
T ss_dssp CCCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHT--CCTTCEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhc--CCCCCEE
Confidence 57889999764 68999999999999999999999999999974 999997532 34666777 9999999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCC--CccccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhc
Q 011364 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI--QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (487)
Q Consensus 87 ~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~--~~~~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (487)
.|+|+|.+++++++++||++++++|||+| .++|+ +.+.++.+.++++||||+|++.+++++++||++++++|+||.+
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~ 151 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999 66898 6667888999999999999999999999999999999999999
Q ss_pred CCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCC
Q 011364 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244 (487)
Q Consensus 165 ~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~ 244 (487)
+||+||+||+|+++++++++++|.+ +|++.++||+||||+|+|++++|++
T Consensus 152 ~gF~eVeTP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~Lr~Spel~~~~~~~g~~ 201 (434)
T 1x54_A 152 DGWHEVFPPILVTGAVEGGATLFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLE 201 (434)
T ss_dssp TTCEECCCCSEESCCSSCGGGCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHS
T ss_pred CCCEEEeCcEEEeecCCCCceeEEE------------------------------eecCCcEEeccChHHHHHHHhcCcc
Confidence 9999999999999999999999975 4678899999999999987888999
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhh
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 324 (487)
|||+||||||+|++++.||+|||||||+|++|.|++|+|+++|+|++++++.+.+++..++++.+...+ .++ .+
T Consensus 202 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~-----~~~-~~ 275 (434)
T 1x54_A 202 KVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLT-----TLK-NT 275 (434)
T ss_dssp EEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCH-----HHH-TC
T ss_pred ceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccc-----ccc-cc
Confidence 999999999999998889999999999999999999999999999999999998887777776654221 122 23
Q ss_pred cCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCccccccccC-CCCceEEEEE
Q 011364 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDM 403 (487)
Q Consensus 325 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl 403 (487)
+.||+|+||.||++++++.|.+ ..||.++++++|++|.+.+. +|+||+|||.+++|||++.++ ++.++++|||
T Consensus 276 ~~pf~rity~ea~~~~~~~g~~----~~~~~dl~~~~e~~l~~~~~--~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl 349 (434)
T 1x54_A 276 EPPFPRISYDEAIDILQSKGVN----VEWGDDLGADEERVLTEEFD--RPFFVYGYPKHIKAFYMKEDPNDPRKVLASDM 349 (434)
T ss_dssp CSSCCEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHTTCS--SCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEE
T ss_pred CCCCcEEEHHHHHHHHHhcCCC----cccCCccChHHHHHHHHHhC--CcEEEEcCChhhCcccCCcCCCCCCeEEEEEE
Confidence 6699999999999999887643 46888999999999887653 799999999999999876654 4568999999
Q ss_pred Eec-CeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 404 LVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 404 ~~~-G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
|++ |+|||+|||+|+||++.|+++++++|++++.++|||+|++||+|||||||||+|||+|++||.+|||||++||+++
T Consensus 350 ~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~ 429 (434)
T 1x54_A 350 LAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTP 429 (434)
T ss_dssp EETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCBT
T ss_pred EECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCcC
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 011364 483 GSVEF 487 (487)
Q Consensus 483 ~~~~~ 487 (487)
++|.+
T Consensus 430 ~~~~p 434 (434)
T 1x54_A 430 ARLYP 434 (434)
T ss_dssp TBCCC
T ss_pred CCCCC
Confidence 99864
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-100 Score=789.69 Aligned_cols=412 Identities=26% Similarity=0.423 Sum_probs=317.2
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC-CCcEEEEE
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQ 89 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~-~gd~V~V~ 89 (487)
+++|++|. . +.|+.|+|+|||+++|++||++|++|||++|. ||||+++ +. |+ .||+|.|+
T Consensus 2 ~~~~~~l~-~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~--------~~--l~~~~~~v~v~ 62 (422)
T 1n9w_A 2 RVLVRDLK-A------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGG--------LK--LPLPESALRVR 62 (422)
T ss_dssp BCCGGGGG-G------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEES--------CC--CCCTTCEEEEE
T ss_pred eEEHHHHH-h------cCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEEc--------cc--cCCCCCEEEEE
Confidence 46788886 3 67899999999999999999999999999974 9999985 24 99 99999999
Q ss_pred eeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccc----cChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcC
Q 011364 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR----VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (487)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~----~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (487)
|+|.+++++++++||++++++|||+|..++|++.+. ++.+.++++||||+|++.+++++++||++++++|+||.++
T Consensus 63 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 63 GLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEEEECTTSTTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999988889999999999999997678987765 6788888999999999999999999999999999999999
Q ss_pred CeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHHHHhccCCc
Q 011364 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (487)
Q Consensus 166 gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~k 245 (487)
||+||+||+|++++++|++++|.+ +|++.++||++|||+|+|++++|++|
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~------------------------------~~~g~~~~L~~Spel~~~~l~~g~~r 192 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFER 192 (422)
T ss_dssp TCEECCCC----------------------------------------------------------CHHHHHHHHHHHSE
T ss_pred CCEEEECCEEEEeCCCCCceeEEE------------------------------eeCCCcEEeeeCHHHHHHHHhhCCCc
Confidence 999999999999999999999865 46788899999999999866688999
Q ss_pred eEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhh
Q 011364 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 324 (487)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 324 (487)
|||||||||+|++++.||+|||||||||++|+ |++|+|+++|+|++++++.+.+.+..++++.+...+ ..
T Consensus 193 vf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~---------~~ 263 (422)
T 1n9w_A 193 VYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SF 263 (422)
T ss_dssp EEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCC---------CC
T ss_pred eeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccc---------cc
Confidence 99999999999998889999999999999999 999999999999999999998877666655443110 11
Q ss_pred cCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccc---cCccEEEEecCCcCccccccccCCCCceEEE
Q 011364 325 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 401 (487)
Q Consensus 325 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~---~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~f 401 (487)
..||+|+||.||++.+++.+ ...||.++.+++|++|.+.+. ..+|+||+|||.+++|||++.+++ .++++|
T Consensus 264 ~~pf~rity~eA~~~~~~~~-----~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~f 337 (422)
T 1n9w_A 264 PQDIPRLTHAEAKRILKEEL-----GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSF 337 (422)
T ss_dssp SSSCCEEEHHHHHHHHHHTS-----CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEE
T ss_pred CCCcceeEHHHHHHHHHhcC-----CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEE
Confidence 15899999999999998766 246888999988888765432 226999999999999999988777 789999
Q ss_pred EEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCC
Q 011364 402 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 481 (487)
Q Consensus 402 dl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~ 481 (487)
|||++|+ ||+|||+|+||+++|++++++.|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+||++
T Consensus 338 DL~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~ 416 (422)
T 1n9w_A 338 DLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRD 416 (422)
T ss_dssp EEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC--
T ss_pred EEEECCE-EEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCC
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011364 482 PGSVEF 487 (487)
Q Consensus 482 ~~~~~~ 487 (487)
+++|.+
T Consensus 417 ~~~~~p 422 (422)
T 1n9w_A 417 RHRLTP 422 (422)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 999863
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-98 Score=796.42 Aligned_cols=440 Identities=17% Similarity=0.229 Sum_probs=360.9
Q ss_pred CCCCCccccceeeccccCCCCC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCcc----chH
Q 011364 2 GSKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE----GYD 73 (487)
Q Consensus 2 ~~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~~----~~~ 73 (487)
.|+.++|.++++++++...|.+ ++...++.|+|+|||+++|.+| |++|++|||++| .||||++.+.. .|+
T Consensus 25 ~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 102 (521)
T 3bju_A 25 DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV--KLQVMANSRNYKSEEEFI 102 (521)
T ss_dssp CSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTE--EEEEEEEGGGSSCHHHHH
T ss_pred CCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCE--EEEEEEECCccCCHHHHH
Confidence 4788999999999999876543 2344578899999999999999 999999999995 59999986532 355
Q ss_pred hH-hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCcc-ccChhhhhhcccccCC-ChhhHHHHHH
Q 011364 74 QV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPR-TNTFGAVARV 150 (487)
Q Consensus 74 ~~-~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~-~~~~~~~r~~r~l~~R-~~~~~~~~~~ 150 (487)
.+ +. |+.||+|.|+|+|.+++++ ++||+|++++||++|..++|.... ..+.+...++||||+| ++.++++|++
T Consensus 103 ~~~~~--l~~gd~V~V~G~v~~t~~g--e~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~ 178 (521)
T 3bju_A 103 HINNK--LRRGDIIGVQGNPGKTKKG--ELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFII 178 (521)
T ss_dssp HHHHH--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHH
T ss_pred HHHhc--CCCCCEEEEEEEEEecCCC--CEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHH
Confidence 43 56 9999999999999999864 899999999999999855665432 2456666699999999 7899999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
||+|++++|+||.++||+||+||+|+++++++++++|. +++ ++|+.++||+|
T Consensus 179 Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~-t~~---------------------------~~~~~~~yL~~ 230 (521)
T 3bju_A 179 RSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFI-TYH---------------------------NELDMNLYMRI 230 (521)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCE-EEE---------------------------TTTTEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEeCceeeccCCCcccccee-eec---------------------------ccCCcceEeeC
Confidence 99999999999999999999999999988777789995 433 46799999999
Q ss_pred chhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcccccccc
Q 011364 231 SGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309 (487)
Q Consensus 231 Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~ 309 (487)
||||||| ++++|++||||||||||||++++ ||||||||||||++|+|++|+|+++|+||+++++.+.+.+. +.+.+
T Consensus 231 SpqL~lk~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~--~~~~~ 307 (521)
T 3bju_A 231 APELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYK--VTYHP 307 (521)
T ss_dssp CSHHHHHHHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSE--EEECT
T ss_pred CHHHHHHHHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCce--EEecc
Confidence 9999995 78999999999999999999964 99999999999999999999999999999999999987652 22211
Q ss_pred ccccchhhhhhhhhhcCCCcccCHHHHHHHHHH------------------------hccccccccccccccchHHHhhh
Q 011364 310 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK------------------------AKKKFEFLVKWGCDLQSEHERYL 365 (487)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~------------------------~~~~~~~~~~~~~~l~~~~e~~l 365 (487)
...+. ..+...+..||+|+||.||++.+.. .+..+....+||..++..+++++
T Consensus 308 ~~~d~---~~~~~d~~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~v 384 (521)
T 3bju_A 308 DGPEG---QAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFL 384 (521)
T ss_dssp TCTTS---CCEEEECCSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHT
T ss_pred ccccc---ccceeccCCCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 10000 0000012345555555555554432 12222223356666777788887
Q ss_pred hhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc------CCCccc--
Q 011364 366 TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS-- 437 (487)
Q Consensus 366 ~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~------g~~~~~-- 437 (487)
.+.+ . +|+||+|||.+++|||++.++++.+++|||||++|. ||+||++|++|+..|+++++++ |.+++.
T Consensus 385 e~~l-~-~P~fI~dyP~~~spla~~~~~dp~~~~rfdL~i~G~-Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~ 461 (521)
T 3bju_A 385 EVTC-I-NPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKK-EICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFI 461 (521)
T ss_dssp GGGC-C-SCEEEECCBGGGCTTBCBCSSSTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCC
T ss_pred HHhc-C-CcEEEECCccccCcccccCCCCCCeeeeEEEEEcce-eeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcc
Confidence 7655 4 799999999999999988877888999999999995 9999999999999999988654 777654
Q ss_pred HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 438 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 438 ~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
++|||+|++||+|||||||||||||+|++||.+||||||+||+.+..
T Consensus 462 d~~yl~al~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 462 DENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp CHHHHHHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred hHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 59999999999999999999999999999999999999999999864
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-98 Score=794.70 Aligned_cols=430 Identities=20% Similarity=0.287 Sum_probs=356.5
Q ss_pred CCCCccccceeeccccCCCCCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHhH
Q 011364 3 SKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQV 75 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~~~----~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~~ 75 (487)
|+.++|.++++++++.+.+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+.+
T Consensus 56 ~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~ 133 (529)
T 4ex5_A 56 AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG--QIQFFVTPADVGAETYDAF 133 (529)
T ss_dssp SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC--EEEEEECHHHHCHHHHHHH
T ss_pred CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe--eEEEEEECCcCCHHHHHHH
Confidence 68899999999999998764210 11278999999999999999999999999996 5999998753 236667
Q ss_pred hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHHHH
Q 011364 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVR 151 (487)
Q Consensus 76 ~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~R 151 (487)
+. |+.||+|.|+|+|.+++++ ++||++++++|||+|. .|+|.+.++ .+...++||||+| ++.++++|++|
T Consensus 134 ~~--l~~gd~V~V~G~v~~t~~g--elel~~~~i~vLs~a~--~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~R 207 (529)
T 4ex5_A 134 KK--WDLGDIVAARGVLFRTNKG--ELSVKCTQLRLLAKAL--RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRAR 207 (529)
T ss_dssp HT--CCTTCEEEEEEEEEECTTS--CEEEEEEEEEEEECCS--SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHH
T ss_pred hc--CCCCCEEEEEEEEEEcCCC--cEEEEEEEEEEEecCC--CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHH
Confidence 77 9999999999999998865 8999999999999997 566666554 3555689999997 78999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
|+|+++||+||.++||+||+||+|+++++++++++|. |++ ++|+.++||+||
T Consensus 208 s~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~~S 259 (529)
T 4ex5_A 208 TKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFV-THH---------------------------NALDMEMFLRIA 259 (529)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCE-EEE---------------------------TTTTEEEEECSC
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccc-ccc---------------------------ccCCcceecccC
Confidence 9999999999999999999999999887666678995 443 367899999999
Q ss_pred hhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccc
Q 011364 232 GQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 310 (487)
Q Consensus 232 pql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~ 310 (487)
||||| +|+++|++||||||||||||++ +.||||||||||||++|+|++|+|+++|+||+++++.+.+.+ ++.+.+.
T Consensus 260 pqLylk~L~v~G~~rVyeIg~~FR~E~~-~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~ 336 (529)
T 4ex5_A 260 PELYLKRLIVGGFERVFEINRNFRNEGV-SPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTA--TIQYQGR 336 (529)
T ss_dssp SHHHHHHHHHTTCSEEEEEEEEECCSCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCS--EEEETTE
T ss_pred HHHHHHHHHhcCCCcEEEeehheecCCC-CCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcC--ceecCce
Confidence 99998 5889999999999999999999 479999999999999999999999999999999999998765 3433322
Q ss_pred cccchhhhhhhhhhcCCCcccCHHHHHHHHHH-------------------hcccccccc--cccc-ccchHHHhhhhhc
Q 011364 311 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-------------------AKKKFEFLV--KWGC-DLQSEHERYLTEE 368 (487)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-------------------~~~~~~~~~--~~~~-~l~~~~e~~l~e~ 368 (487)
.. .+..||+|+||.||++.+.. .|.+++... .|+. ++..+++..++++
T Consensus 337 ~i----------d~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~ 406 (529)
T 4ex5_A 337 EL----------DLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEA 406 (529)
T ss_dssp EE----------ETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGG
T ss_pred ee----------ccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhcc
Confidence 11 14568899999999876543 122222100 3442 3444455555666
Q ss_pred cccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHH------cCCCcccH--HH
Q 011364 369 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY--WW 440 (487)
Q Consensus 369 ~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~------~g~~~~~~--~~ 440 (487)
.+. +|+||+|||.+++|||++.++++.+++|||||++|+ ||+||++|++|+++|++++++ .|.++..+ +|
T Consensus 407 ~l~-~P~FI~dyP~~~splak~~~~~p~~~~rFeL~i~G~-EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~ 484 (529)
T 4ex5_A 407 QLW-EPTFIIDYPIEVSPLARESDTVAGITERFELFITGR-EIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDAD 484 (529)
T ss_dssp GCC-SCEEEEEEEGGGCTTBCBCSSSTTEEEEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHH
T ss_pred ccC-CCEEEECCchhhCCCcccCCCCCCceEEEEEEECCE-EEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHH
Confidence 666 799999999999999987777788999999999996 999999999999999888754 24333332 89
Q ss_pred HHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 441 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 441 yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
||+|++||+|||||||||||||+|++||.+|||||++||+...
T Consensus 485 yl~aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 485 YIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLRR 527 (529)
T ss_dssp HHHHHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCCC
T ss_pred HHHHHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccCC
Confidence 9999999999999999999999999999999999999999753
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-97 Score=783.94 Aligned_cols=431 Identities=19% Similarity=0.297 Sum_probs=353.2
Q ss_pred CCCCCccccceeeccccCCCCCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchH-
Q 011364 2 GSKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD- 73 (487)
Q Consensus 2 ~~~~~~~~~~~~i~~i~~~~~~~~----~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~- 73 (487)
.|+.++|.+++++++|...+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+
T Consensus 33 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 110 (504)
T 1e1o_A 33 VAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYND 110 (504)
T ss_dssp CSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHH
T ss_pred CCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEECCcCCHHHHHH
Confidence 478899999999999998754200 01278999999999999999999999999996 5999998753 2366
Q ss_pred hHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHH
Q 011364 74 QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVAR 149 (487)
Q Consensus 74 ~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~ 149 (487)
.++. |+.||+|.|+|+|.+++++ ++||++++++||++|.. |+|.+.++ .+...++||||+| ++.++++|+
T Consensus 111 ~~~~--l~~g~~V~V~G~v~~~~~g--e~ei~~~~i~vl~~a~~--plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r 184 (504)
T 1e1o_A 111 QFKK--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALR--PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFV 184 (504)
T ss_dssp TGGG--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCC-------TTHHHHTHHHHHHHCHHHHHHHH
T ss_pred HHhc--CCCCCEEEEEEEEEecCCc--eEEEEEEEEEEecccCC--CCCccccCCcChhhhhhccchhhhcCHHHHHHHH
Confidence 5677 9999999999999999875 89999999999999974 45555544 4555699999996 899999999
Q ss_pred HHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc
Q 011364 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (487)
+||+|++++|+||.++||+||+||+|+++++++++++|.+ ++ ++++.++||+
T Consensus 185 ~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t-~~---------------------------~~~~~~~yL~ 236 (504)
T 1e1o_A 185 VRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFIT-HH---------------------------NALDLDMYLR 236 (504)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEE-EE---------------------------TTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEe-cc---------------------------CCCCceEEec
Confidence 9999999999999999999999999998877666789964 32 4678999999
Q ss_pred cchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccc
Q 011364 230 VSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 308 (487)
Q Consensus 230 ~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~ 308 (487)
|||||||| |+++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+.+. +.+.
T Consensus 237 ~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~--i~~~ 313 (504)
T 1e1o_A 237 IAPELYLKRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTK--VTYG 313 (504)
T ss_dssp SCSHHHHHHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSE--EEET
T ss_pred cCHHHHHHHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCce--eeeC
Confidence 99999996 6889999999999999999995 699999999999999999999999999999999999988763 4443
Q ss_pred cccccchhhhhhhhhhcCCCcccCHHHHHHHHHH-hc------------------cccccccccccccchHHHhhhhhcc
Q 011364 309 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-AK------------------KKFEFLVKWGCDLQSEHERYLTEEA 369 (487)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-~~------------------~~~~~~~~~~~~l~~~~e~~l~e~~ 369 (487)
+... -+..||+|+||.||++.+.. .+ .+++....+|..++..++. ++++.
T Consensus 314 ~~~i----------~~~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~-~ve~~ 382 (504)
T 1e1o_A 314 EHVF----------DFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDE-VAEAH 382 (504)
T ss_dssp TEEE----------ETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHH-HTGGG
T ss_pred CEee----------ccCCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHH-Hhhcc
Confidence 2210 13458889999999887754 21 1111001112222333444 44555
Q ss_pred ccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc-----CCCcccH---HHH
Q 011364 370 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWY 441 (487)
Q Consensus 370 ~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~-----g~~~~~~---~~y 441 (487)
+. +|+||+|||.+++||+++.++|+.++++||||++|+ ||+||++|+||++.|+++++.. ..+++.+ +||
T Consensus 383 ~~-~p~fV~dyP~~~~pf~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~y 460 (504)
T 1e1o_A 383 LI-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDY 460 (504)
T ss_dssp CC-SCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHH
T ss_pred CC-CeEEEECCCcccCcCcCCCCCCCCceEEEEEEECCe-EEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHH
Confidence 54 799999999999999988777888999999999998 9999999999999999998753 1233443 999
Q ss_pred HHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 442 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 442 l~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
|+|++||+|||||||||||||+|++||.+||||||+||+.+..
T Consensus 461 l~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 461 VTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQ 503 (504)
T ss_dssp HHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC-
T ss_pred HHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCCC
Confidence 9999999999999999999999999999999999999998763
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-97 Score=780.11 Aligned_cols=431 Identities=24% Similarity=0.404 Sum_probs=366.1
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCe-EEEEEEcCCCCeeeEEEEeCCc------cchHhHhccCCCC
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDA------EGYDQVKSGLITT 82 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i-~Fi~lrD~~~~~~lQvv~~~~~------~~~~~~~~~~L~~ 82 (487)
++++|++|... ++.|++|+|+|||+++|++||+ +|++|||++| .||||++.+. ..++.++. |+.
T Consensus 22 ~~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~~~~~--l~~ 92 (487)
T 1eov_A 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LNL 92 (487)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred ceeEHHHhccc-----ccCCCEEEEEEEEEEeeccCCccEEEEEEECCc--cEEEEEeccccccccHHHHHHHhc--CCC
Confidence 44567777642 2678999999999999999997 9999999996 5999998651 12455667 999
Q ss_pred CcEEEEEeeEeecCC-----CCceEEEEEeEEEEEccCCCCCCCCccc---------------cChhhhhhcccccCCCh
Q 011364 83 GASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------VSREFLRTKAHLRPRTN 142 (487)
Q Consensus 83 gd~V~V~G~~~~~~~-----~~~~~el~~~~i~vls~~~~~~p~~~~~---------------~~~~~~r~~r~l~~R~~ 142 (487)
||+|.|+|+|.+++. .++++||++++++|||+|..++|++.++ .+.+...++||||+|++
T Consensus 93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~ 172 (487)
T 1eov_A 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTV 172 (487)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSH
T ss_pred CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCH
Confidence 999999999999974 3478999999999999998778886431 45666779999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 011364 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (487)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
.+++++++||+|++++|+||.++||+||+||+|+++++++++++|.+ +|+
T Consensus 173 ~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~------------------------------~~~ 222 (487)
T 1eov_A 173 TNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TYF 222 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE------------------------------EET
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee------------------------------ccC
Confidence 99999999999999999999999999999999999999999999976 356
Q ss_pred CcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHHHHHHhhcc
Q 011364 223 EKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDN 300 (487)
Q Consensus 223 ~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~~~~~ 300 (487)
++++||+||||+|+| ++++|++||||||||||||++++.||+|||||||||++|. +++|+|+++|+||+++++.+.+.
T Consensus 223 ~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~ 302 (487)
T 1eov_A 223 KGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKR 302 (487)
T ss_dssp TEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999996 6789999999999999999998899999999999999997 69999999999999999999876
Q ss_pred CccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhh---ccccCccEEE
Q 011364 301 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIV 377 (487)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e---~~~~~~p~fi 377 (487)
+..++..+....... .+......||++++|.||++++++.|.+ ..|+.++....++.|.+ ..+...|+||
T Consensus 303 ~~~~l~~~~~~~~~~---~~~~~~~~~~~ri~~~ea~~~l~~~g~~----~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v 375 (487)
T 1eov_A 303 FAHEIELVRKQYPVE---EFKLPKDGKMVRLTYKEGIEMLRAAGKE----IGDFEDLSTENEKFLGKLVRDKYDTDFYIL 375 (487)
T ss_dssp CHHHHHHHHHHSCCC---CCCCCTTCCCEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred chhHHHhhhhhcCCc---ceecccCCCeeEEEHHHHHHHHHHhCCC----CCcccchhhHHHHHHHHHHHHHhCCCCEEE
Confidence 654443222111000 0110112378999999999999887754 35667888888887753 2233257899
Q ss_pred EecCCcCccccc-cccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcc--cHHHHHHHHhcCCCCccc
Q 011364 378 SDYPKEIKAFYM-RQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGSVPHAG 454 (487)
Q Consensus 378 ~~~P~~~~pf~~-~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~--~~~~yl~~~~~G~pP~~G 454 (487)
+|||.+++|||+ +.++|+.++++||||++|+ ||+|||+|+||++.|+++++..|++++ .++|||+|++||+|||||
T Consensus 376 ~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~-Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG 454 (487)
T 1eov_A 376 DKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAG 454 (487)
T ss_dssp ECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEE
T ss_pred ECCccccChhhcCcCCCCCCeEEEEEEEeCCE-EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeE
Confidence 999999999965 4455667899999999995 999999999999999999999999988 789999999999999999
Q ss_pred eeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011364 455 FGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 487 (487)
Q Consensus 455 ~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~~ 487 (487)
||||+|||+|++||.+||||||+|||+|++|..
T Consensus 455 ~glGiDRLvmll~g~~~IRdVi~FPr~~~r~~p 487 (487)
T 1eov_A 455 GGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP 487 (487)
T ss_dssp EEEEHHHHHHHHTTCSSGGGGCSSCCBTTBCCC
T ss_pred EEEhHHHHHHHHcCCCcHHheeecCCCCCCCCC
Confidence 999999999999999999999999999999963
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-97 Score=779.51 Aligned_cols=440 Identities=20% Similarity=0.300 Sum_probs=354.5
Q ss_pred CCCCCccccceeeccccCCCCCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc---cchHh
Q 011364 2 GSKVGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ 74 (487)
Q Consensus 2 ~~~~~~~~~~~~i~~i~~~~~~~~----~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~---~~~~~ 74 (487)
.|+.++|.++++++++...+.+-. ...|+.|+|+|||+++|.+||++|++|||++| .||||++.+. ..|+.
T Consensus 25 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~ 102 (493)
T 3a74_A 25 DPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTG--QIQIYVRQDDVGEQQYEL 102 (493)
T ss_dssp CTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEEHHHHHHHHHHH
T ss_pred CCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCE--eEEEEEECCcCCHHHHHH
Confidence 478899999999999998754210 01278999999999999999999999999996 5999998653 23666
Q ss_pred HhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCCCccccC---hhhhhhcccccCC-ChhhHHHHHH
Q 011364 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARV 150 (487)
Q Consensus 75 ~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~---~~~~r~~r~l~~R-~~~~~~~~~~ 150 (487)
++. |+.||+|.|+|+|.+++++ ++||++++++||++|.. |+|.+.++ .+...++||||+| ++.++++|++
T Consensus 103 ~~~--l~~g~~v~V~G~v~~~~~g--e~ei~~~~i~vl~~~~~--plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~ 176 (493)
T 3a74_A 103 FKI--SDLGDIVGVRGTMFKTKVG--ELSIKVSSYEFLTKALR--PLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFIT 176 (493)
T ss_dssp HHH--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHH
T ss_pred Hhc--CCCCCEEEEEEEEEeCCCC--cEEEEEEEEEEcccccC--CCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHH
Confidence 777 9999999999999999875 89999999999999974 55555554 5555699999996 8899999999
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
||+|++++|+||.++||+||+||+|+++++++++++|.+ ++ ++++.++||+|
T Consensus 177 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~-~~---------------------------~~~~~~~yLr~ 228 (493)
T 3a74_A 177 RSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFIT-HH---------------------------NALDMTLYMRI 228 (493)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EE---------------------------TTTTEEEEECS
T ss_pred HHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEe-cc---------------------------cCCCceeEEec
Confidence 999999999999999999999999998877777889964 22 46789999999
Q ss_pred chhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcccccccc
Q 011364 231 SGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFN 309 (487)
Q Consensus 231 Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~ 309 (487)
||||||| ++++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+++. +.+.+
T Consensus 229 SpqLylk~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~--i~~~~ 305 (493)
T 3a74_A 229 AIELHLKRLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK--IQYGE 305 (493)
T ss_dssp CSHHHHHHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE--EEETT
T ss_pred CHHHHHHHHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCce--EeeCC
Confidence 9999995 6889999999999999999995 699999999999999999999999999999999999988763 33322
Q ss_pred -------ccccchhhhhhhhhhcCCC-cccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecC
Q 011364 310 -------TWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 381 (487)
Q Consensus 310 -------~~~~~~~~~~l~~~~~~~~-~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P 381 (487)
+|.+.++.++++.+.+.++ ..++.+++.+++++.|.+++....||..++..++.++ ++.+. +|+||+|||
T Consensus 306 ~~i~~~~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v-e~~~~-~p~fv~dyP 383 (493)
T 3a74_A 306 HLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKV-EDKLI-QPTFIYGHP 383 (493)
T ss_dssp EEEECCSSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHT-GGGCC-SCEEEECCB
T ss_pred EeeccCCCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHh-hcccC-CcEEEECCC
Confidence 2333333333333333333 2333333333334444332222234445555556554 44444 799999999
Q ss_pred CcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc-----CCCcccH---HHHHHHHhcCCCCcc
Q 011364 382 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGSVPHA 453 (487)
Q Consensus 382 ~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~-----g~~~~~~---~~yl~~~~~G~pP~~ 453 (487)
.+++|||++.++|+.++++||||++|+ ||+||++|+||++.|+++++.. ..+++.+ +|||+|++||+||||
T Consensus 384 ~~~~pf~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhg 462 (493)
T 3a74_A 384 VEISPLAKKNPDDPRFTDRFELFIVGR-EHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTG 462 (493)
T ss_dssp GGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEE
T ss_pred cccCCccCcCCCCCCeEEEEEEEeCCe-EEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCce
Confidence 999999988877888999999999998 9999999999999999998753 1233443 899999999999999
Q ss_pred ceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011364 454 GFGLGFERLVQFATGVENIRDAIPFPRTPG 483 (487)
Q Consensus 454 G~giGidRL~m~l~g~~~Irdv~~FPr~~~ 483 (487)
|||||||||+|++||.+||||||+||+.+.
T Consensus 463 G~glGiDRLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 463 GLGIGVDRLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred eEEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 999999999999999999999999999864
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-95 Score=777.73 Aligned_cols=413 Identities=22% Similarity=0.368 Sum_probs=335.2
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (487)
++|+++++... +.|+.|+|+|||+++|++|+++|++|||++| .||||++.+...|+.++. |+.||+|.|+
T Consensus 3 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~--l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREG--LVQLVAHPASPAYATAER--VRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTE--EEEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred cEEEHHHhHHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEeCChhHHHHHhc--CCCCcEEEEE
Confidence 78899999874 6899999999999999999999999999997 499999865435666777 9999999999
Q ss_pred eeEeecCC-----CCceEEEEEeEEEEEccCCC-CCCCCc------cccChhhhh-hcccccCCChhhHHHHHHHHHHHH
Q 011364 90 GNVVPSQG-----SKQKVELKVNKIVLVGKSDP-SYPIQK------KRVSREFLR-TKAHLRPRTNTFGAVARVRNALAY 156 (487)
Q Consensus 90 G~~~~~~~-----~~~~~el~~~~i~vls~~~~-~~p~~~------~~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~ 156 (487)
|+|.++++ +++++||+|++++|||+|.+ ++|+.+ +....+.+| ++||||+|++.++++|++||+|++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 99999852 35689999999999999973 255544 223334455 999999999999999999999999
Q ss_pred HHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhH
Q 011364 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNA 236 (487)
Q Consensus 157 ~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l 236 (487)
++|+||.++||+||+||+|+++++||+++ |.+ +++. .+.+|| +|+|||||||
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v-~~~~----------------------~~~~~y----~L~qSPQl~k 204 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLV-PYRH----------------------EPGLFY----ALPQSPQLFK 204 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEE-ECTT----------------------STTEEE----ECCSCSHHHH
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccc-cccc----------------------cCCcee----ECccCHHHHH
Confidence 99999999999999999999999998876 754 2221 001233 5999999999
Q ss_pred H-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccch
Q 011364 237 E-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 315 (487)
Q Consensus 237 ~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (487)
| ||++|++||||||||||||+++++|| ||||||||||+|+|++|+|+++|+||+++++.+.+..
T Consensus 205 q~Lmv~G~~rvfqI~~~FR~E~~~~~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~-------------- 269 (580)
T 1l0w_A 205 QMLMVAGLDRYFQIARCFRDEDLRADRQ-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVE-------------- 269 (580)
T ss_dssp HHHHHTTCSEEEEEEEEECCCCCCSSCC-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCC--------------
T ss_pred HHHHHhccCCeEEEeceeeCCCCCCCcC-CCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCCc--------------
Confidence 7 68999999999999999999965555 6999999999999999999999999999999986421
Q ss_pred hhhhhhhhhcCCCcccCHHHHHHHH-------------------------------------------------------
Q 011364 316 IIDRLSTVAERDFVQLSYTDAIELL------------------------------------------------------- 340 (487)
Q Consensus 316 ~~~~l~~~~~~~~~~it~~ea~~~l------------------------------------------------------- 340 (487)
+..||+|+||.||++.+
T Consensus 270 --------~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~ 341 (580)
T 1l0w_A 270 --------LPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVA 341 (580)
T ss_dssp --------CCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHH
T ss_pred --------cCCCccEEEHHHHHHHhcCCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHH
Confidence 12356666666666554
Q ss_pred HHhccccccccccccc-cchHHHhh----------------------------------------------hhhccccCc
Q 011364 341 IKAKKKFEFLVKWGCD-LQSEHERY----------------------------------------------LTEEAFGGC 373 (487)
Q Consensus 341 ~~~~~~~~~~~~~~~~-l~~~~e~~----------------------------------------------l~e~~~~~~ 373 (487)
++.|.+--....|+.+ +.+.++++ |++. . .+
T Consensus 342 ~~~g~~~~~~~~~~~~~~~~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~-~-~~ 419 (580)
T 1l0w_A 342 KRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-G-FR 419 (580)
T ss_dssp HHTSCSCCEEEEEETTEEESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC-S-CC
T ss_pred HHcCCCcceEEEecCccccchhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc-c-cC
Confidence 1111100000122322 22222221 2222 2 27
Q ss_pred cEEEEecCCc------------CccccccccC-------CC-Cc-eEEEEEEecCeeeeechhHhhchHHHHHHHHHHcC
Q 011364 374 PVIVSDYPKE------------IKAFYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432 (487)
Q Consensus 374 p~fi~~~P~~------------~~pf~~~~~~-------~~-~~-~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g 432 (487)
|+||+|||.. ++||||+.++ |+ .+ +++|||++||+ ||+|||+|+||++.|+++++.+|
T Consensus 420 p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g 498 (580)
T 1l0w_A 420 FLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLG 498 (580)
T ss_dssp EEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHT
T ss_pred eEEEEcCCcccccccccccccccCCccCCCchhhhhhcCCccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHHHHHcC
Confidence 9999999996 8999998765 34 25 79999999998 99999999999999999999999
Q ss_pred CCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 433 LNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 433 ~~~~~----~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
++++. ++|||+|++||+|||||||||+|||+|++||.+||||||+||++++.+.
T Consensus 499 ~~~ee~~~~~~~~L~al~yG~PPhgG~glGlDRLvMll~g~~sIRdVi~FP~~~~~~~ 556 (580)
T 1l0w_A 499 IGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKD 556 (580)
T ss_dssp CCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSCB
T ss_pred CChhHHHhHHHHHHHHHhcCCCCCceEEEcHHHHHHHHcCCCcHHeEecCCCCCCccc
Confidence 98776 7899999999999999999999999999999999999999999998875
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-94 Score=772.18 Aligned_cols=435 Identities=21% Similarity=0.315 Sum_probs=342.4
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCc-cchHhHhccCCCCCcEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~-~~~~~~~~~~L~~gd~V~V 88 (487)
+++++++|... +.|+.|+|+|||+++|++|+++|++|||++| .||||++.+. ..|+.++. |+.||+|.|
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~--l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREG--IVQVFFDPDRADALKLASE--LRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTE--EEEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred ceeEHHHHHHH------hCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEeCCchHHHHHHhc--CCCCCEEEE
Confidence 57889999874 6799999999999999999999999999997 4999998653 23566677 999999999
Q ss_pred EeeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCCcc-ccChhhhhhcccccCCChhhHHHHHHHHHHHHHHHH
Q 011364 89 QGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (487)
Q Consensus 89 ~G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~~~-~~~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (487)
+|+|.+++. +++++||++++++|||+|. .+|++.. ..+.+...++||||+|++.++++|++||+|++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~-~lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC-SCSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccC-CCCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999865 3578999999999999997 3454433 344444449999999999999999999999999999
Q ss_pred hhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH-HH
Q 011364 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TY 239 (487)
Q Consensus 161 ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll 239 (487)
||.++||+||+||+|+++++||+++ |.+ +++. .+.+|| ||+|||||||| ||
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v-~~~~----------------------~~~~~y----~L~qSPQl~kq~Lm 202 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLV-PSRV----------------------HKGKFY----ALPQSPQLFKQLLM 202 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEE-ECSS----------------------STTCEE----ECCSCSHHHHHHHH
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-cee-cccc----------------------cCCceE----eCccCHHHHHHHHH
Confidence 9999999999999999999998876 754 2221 002333 69999999997 68
Q ss_pred hccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCcc---------ccccccc
Q 011364 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE---------DMDFFNT 310 (487)
Q Consensus 240 ~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~---------~l~~~~~ 310 (487)
++|++||||||||||||+++++|| ||||||||||+|+|++|+|+++|+||+++++.+.+.+.. .+..++.
T Consensus 203 v~G~~rvfqI~~~FR~E~~~t~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~~f~r~ty~ea~~~~g~ 281 (585)
T 1c0a_A 203 MSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGS 281 (585)
T ss_dssp HTTCCEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEEHHHHHHHHSC
T ss_pred hcCCCceEEEeceeecCCCCCCcC-cccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCccccceeeHHHHHHHhcC
Confidence 999999999999999999965555 699999999999999999999999999999998764321 1111110
Q ss_pred cc-----c------------chh---hhhhhh----h--h----cCCCcccCHHHHHHHHHHhcccccccccccc-----
Q 011364 311 WI-----E------------KGI---IDRLST----V--A----ERDFVQLSYTDAIELLIKAKKKFEFLVKWGC----- 355 (487)
Q Consensus 311 ~~-----~------------~~~---~~~l~~----~--~----~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~----- 355 (487)
.. . .++ .+.+++ . + +.+|++.+++++.+++++.|.+--..+.|+.
T Consensus 282 dkpd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 361 (585)
T 1c0a_A 282 DKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGL 361 (585)
T ss_dssp SSCCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEESCGGGGG
T ss_pred CCccccCCceeEEehhhhccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEeccccccc
Confidence 00 0 000 000000 0 0 1135677788888888876532000122332
Q ss_pred -ccchHHHhh-----------------------------------------------hhhccccCccEEEEecCCc----
Q 011364 356 -DLQSEHERY-----------------------------------------------LTEEAFGGCPVIVSDYPKE---- 383 (487)
Q Consensus 356 -~l~~~~e~~-----------------------------------------------l~e~~~~~~p~fi~~~P~~---- 383 (487)
++.+.++++ ++++... +|+||+|||..
T Consensus 362 ~~~~~~~~k~l~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~-~p~fV~dfP~~~~~~ 440 (585)
T 1c0a_A 362 EGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKW-APLWVIDFPMFEDDG 440 (585)
T ss_dssp GGEECTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCC-CEEEEECCBSEEECS
T ss_pred ccccchhhhhcCHHHHHHHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCccccccc-ccEEEEeCCcccccc
Confidence 122211111 2222122 79999999997
Q ss_pred -------CccccccccC-------CCC-c-eEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCccc----HHHHHH
Q 011364 384 -------IKAFYMRQND-------DGR-T-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLD 443 (487)
Q Consensus 384 -------~~pf~~~~~~-------~~~-~-~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~----~~~yl~ 443 (487)
++||||+.++ |+. + +++|||++||+ ||+|||+|+||++.|+++++..|++++. ++|||+
T Consensus 441 ~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~ 519 (585)
T 1c0a_A 441 EGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLD 519 (585)
T ss_dssp SSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccccccCCccCCCchhhhhhccCCcceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHH
Confidence 8999998765 353 5 79999999998 9999999999999999999999998876 789999
Q ss_pred HHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 444 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 444 ~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|++||+|||||||||+|||+|++||.+||||||+||++++.+.
T Consensus 520 al~yG~PPhgG~glGlDRLvmlltg~~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 520 ALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp HTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTSCB
T ss_pred HHhcCCCCceeEEEcHHHHHHHHcCCCcHHheecCCCCCCccc
Confidence 9999999999999999999999999999999999999998875
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-83 Score=688.93 Aligned_cols=438 Identities=22% Similarity=0.282 Sum_probs=326.4
Q ss_pred CCCCCCccc-cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhHh
Q 011364 1 MGSKVGEFR-KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVK 76 (487)
Q Consensus 1 ~~~~~~~~~-~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~~ 76 (487)
|-|.+.+|. +++++.+|... +.|++|+|+|||+++|++ +|++|||++| .||||++++.. .|+.++
T Consensus 1 ~~~~~~~~~~rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~ 69 (617)
T 4ah6_A 1 MIPEFSSFVVRTNTCGELRSS------HLGQEVTLCGWIQYRRQN---TFLVLRDFDG--LVQVIIPQDESAASVKKILC 69 (617)
T ss_dssp --CCCSCSSSCSSCGGGCCGG------GTTCEEEEEEEECCCCTT---TEEEEECSSC--EEEEECCCSSSSHHHHHHHH
T ss_pred CCccccccccCceEHHHhHHH------hCCCEEEEEEEeeeecCe---EEEEEEeCCc--CEEEEEeCCcCcHHHHHHHh
Confidence 345566664 88999999875 789999999999999975 5999999997 59999987642 356677
Q ss_pred ccCCCCCcEEEEEeeEeecCC-------CCceEEEEEeEEEEEccCCCCCCCCccccC--hhhhh-hcccccCCChhhHH
Q 011364 77 SGLITTGASIWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKRVS--REFLR-TKAHLRPRTNTFGA 146 (487)
Q Consensus 77 ~~~L~~gd~V~V~G~~~~~~~-------~~~~~el~~~~i~vls~~~~~~p~~~~~~~--~~~~r-~~r~l~~R~~~~~~ 146 (487)
. |+.||+|.|+|+|++++. .++++||++++++|||+|. ++|++.+.+. .+.+| ++||||+|++.+++
T Consensus 70 ~--l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~ 146 (617)
T 4ah6_A 70 E--APVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQY 146 (617)
T ss_dssp H--CCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHH
T ss_pred c--CCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHH
Confidence 8 999999999999998643 2468999999999999998 7888755432 34445 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-cCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 011364 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (487)
+|++||++++++|+||. ++||+||+||+|++++++|+++ |.+. ++ .++..
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~-~~---------------------------~~g~~ 197 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVP-SR---------------------------EPGKF 197 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEE-CS---------------------------STTCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceec-cc---------------------------cCCcc
Confidence 99999999999999996 7999999999999988888765 7542 21 23566
Q ss_pred cccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhcc----
Q 011364 226 AFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN---- 300 (487)
Q Consensus 226 ~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~---- 300 (487)
+||+||||+||| |+++|++|||||+||||||+++ .+|+|||||||||++|+|++|+|+++|+||+++++.+...
T Consensus 198 ~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~-t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~~~~~p 276 (617)
T 4ah6_A 198 YSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSR-PDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVP 276 (617)
T ss_dssp EECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSC-SSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSCCCCSS
T ss_pred cccccCHHHHHHHHHhcccCcEEEEEhheecccCC-CCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 789999999996 6889999999999999999995 5669999999999999999999999999999998754221
Q ss_pred ---------------Cccccccccccccc---------hhh-hhhhh---------hhcC--CCcccCHHHHHHHHHH-h
Q 011364 301 ---------------CKEDMDFFNTWIEK---------GII-DRLST---------VAER--DFVQLSYTDAIELLIK-A 343 (487)
Q Consensus 301 ---------------~~~~l~~~~~~~~~---------~~~-~~l~~---------~~~~--~~~~it~~ea~~~l~~-~ 343 (487)
.+.|+.+--...+. .+. ..+.. +.+. .+.|-..++..+..+. .
T Consensus 277 f~r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~ 356 (617)
T 4ah6_A 277 FPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHF 356 (617)
T ss_dssp CCEEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSS
T ss_pred ceEeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhc
Confidence 11222210000000 000 00000 0000 0122222332222222 1
Q ss_pred cccc------cc-----------------------ccccccc--------------cch---H-HHhh------hhhccc
Q 011364 344 KKKF------EF-----------------------LVKWGCD--------------LQS---E-HERY------LTEEAF 370 (487)
Q Consensus 344 ~~~~------~~-----------------------~~~~~~~--------------l~~---~-~e~~------l~e~~~ 370 (487)
|... .. ..+.|+. |.. . .+.. |.++-
T Consensus 357 g~ggl~~~~~~d~~~~~~I~Kflsee~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~- 435 (617)
T 4ah6_A 357 NQEILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPT- 435 (617)
T ss_dssp CCCEEEECSSTTTTSSCTTHHHHHHHHHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTT-
T ss_pred CCceEEEEEecCCccccchhhhcCHHHHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCC-
Confidence 1000 00 0000100 000 0 0111 12111
Q ss_pred cCccEEEEecCCc-------------CccccccccCC-------CC--ceEEEEEEecCeeeeechhHhhchHHHHHHHH
Q 011364 371 GGCPVIVSDYPKE-------------IKAFYMRQNDD-------GR--TVAAMDMLVPRIGELIGGSQREERLEYLEGRL 428 (487)
Q Consensus 371 ~~~p~fi~~~P~~-------------~~pf~~~~~~~-------~~--~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~ 428 (487)
...++||+|||.. ++||+++..+| +. .+.+|||++||+ ||+|||+|+|+++.|++++
T Consensus 436 ~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~q~~~f 514 (617)
T 4ah6_A 436 LFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAELQRYIL 514 (617)
T ss_dssp SCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHHHHHHH
T ss_pred CeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHHHHHHH
Confidence 1268999999984 68999987543 22 467899999996 9999999999999999999
Q ss_pred H-HcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 429 D-ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 429 ~-~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
+ ..|++.+.++|||+|++||+|||||||+|+|||+|+++|.+||||||+||++...
T Consensus 515 ~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~irdvi~fP~~~~~ 571 (617)
T 4ah6_A 515 ATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSFRG 571 (617)
T ss_dssp HHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGGSSSSCCCSSS
T ss_pred HHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchheEEecCCCCCc
Confidence 8 7899888899999999999999999999999999999999999999999998754
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-74 Score=581.04 Aligned_cols=303 Identities=18% Similarity=0.179 Sum_probs=237.2
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC-CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 138 ~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
+.|++ .+++|++||+|+++||+||.++||+||+||+|++++++ +.+++|.+....+
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~---------------------- 83 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGP---------------------- 83 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCS----------------------
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCc----------------------
Confidence 45555 88999999999999999999999999999999988876 4678997522111
Q ss_pred ccccccCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~ 295 (487)
..-.+.++||+|||||||| ++++|++||||||||||||++ +.||+|||||||||++|+|++|+|+++|+||+++++
T Consensus 84 --~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 84 --GHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD 160 (345)
T ss_dssp --TTSCCEEEEECSCSHHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC
T ss_pred --ccccCCCEeecCCHHHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc
Confidence 0011367899999999997 889999999999999999999 899999999999999999999999999999999986
Q ss_pred HhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccc-cccchHHHhhhh---hccc-
Q 011364 296 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG-CDLQSEHERYLT---EEAF- 370 (487)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~-~~l~~~~e~~l~---e~~~- 370 (487)
. .+|.+.++.+.++++++.+.+.++++++.+++++.|.. ...|+ .++....++++. ++.+
T Consensus 161 ~------------~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~---~~~~~~~~~~~~~e~~l~~~ve~~lg 225 (345)
T 3a5y_A 161 C------------PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLS---NVADTEEDRDTLLQLLFTFGVEPNIG 225 (345)
T ss_dssp C------------CCCEEEEHHHHHHHHTCCCTTCCC---------------------------HHHHHHHHHHTGGGSS
T ss_pred C------------CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCc---ccCCCcCCHhHHHHHHHHHHHHHHcC
Confidence 2 13334455566666666666667777777777666643 02344 456666666654 3333
Q ss_pred cCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHc-------CCCcccH-HHHH
Q 011364 371 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDSY-WWYL 442 (487)
Q Consensus 371 ~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~-------g~~~~~~-~~yl 442 (487)
..+|+||+|||.+++||++..++++.++++||||+||+ ||+||++|++++++|+++++.. |+++..+ +|||
T Consensus 226 ~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl 304 (345)
T 3a5y_A 226 KEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLI 304 (345)
T ss_dssp SSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHH
T ss_pred CCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 23799999999999999876555666889999999998 9999999999999999998864 8888888 6899
Q ss_pred HHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 443 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 443 ~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
+|++||+|||||||||+|||+|++||.+||||||+|||+.
T Consensus 305 ~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 305 EALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGSSSCTTT
T ss_pred HHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEecCCccc
Confidence 9999999999999999999999999999999999999974
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-67 Score=520.57 Aligned_cols=279 Identities=27% Similarity=0.461 Sum_probs=244.7
Q ss_pred hcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeecc--------CCCCCCCCceeeecCCCcccccCCCC
Q 011364 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS--------DCEGAGEQFCVTTLIPSSREAAESPV 204 (487)
Q Consensus 133 ~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~--------~~eg~~~~F~vt~~~~~~~~~~~~~~ 204 (487)
+||++|+|++ +++++++|+++++.+|+||.++||+||+||+|+++ .+|+ +++|.+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~--------------- 63 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV--------------- 63 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---------------
Confidence 4899999999 99999999999999999999999999999999999 7777 777764
Q ss_pred CCCCCCCCCCccccccccCcccccccchhhhHH-HHhccCCceEEEecccccCC--CCCCcccccccceeeEEccCCHHH
Q 011364 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKD 281 (487)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~--~~t~rHl~EFtmlE~e~~~~~~~~ 281 (487)
+|+++++||++|||+|++ ++++|++|||+||||||+|+ +++.||+|||||||+|++|.|++|
T Consensus 64 ---------------~~~~~~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~ 128 (294)
T 1nnh_A 64 ---------------EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMED 128 (294)
T ss_dssp ---------------EETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHH
T ss_pred ---------------EcCCCCEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHH
Confidence 366888999999999996 66778999999999999999 877899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHH
Q 011364 282 DMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 361 (487)
Q Consensus 282 lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~ 361 (487)
+|+++|+|++++++.+.+....++ . .++. |+|++|.||++ + ||. .+
T Consensus 129 l~~~~e~l~~~l~~~~~~~~~~~i---------------~-~~~~-~~r~~y~ea~~---~----------~g~----~~ 174 (294)
T 1nnh_A 129 IMRLIERLVYGLFRKAEEWTGREF---------------P-KTKR-FEVFEYSEVLE---E----------FGS----DE 174 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCC---------------C-CCSS-CEEEEHHHHHH---H----------TSS----HH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc---------------c-cCCC-ceEeEHHHHHH---H----------hCC----hH
Confidence 999999999999988753100001 0 1233 89999999995 2 222 22
Q ss_pred HhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEec-CeeeeechhHhhchHHHHHHHHHHcCCCcccHHH
Q 011364 362 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 440 (487)
Q Consensus 362 e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~-G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~ 440 (487)
++ ++.. . +|+||+||| +|||++. |+.++++||+|++ |++||+||++|+++++.|.++++..|++++.++|
T Consensus 175 er--~~~~-~-~P~~v~~~P---~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~ 245 (294)
T 1nnh_A 175 KA--SQEM-E-EPFWIINIP---REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRP 245 (294)
T ss_dssp HH--HHHC-S-SCEEEECCC---CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHH
T ss_pred hh--hhhc-C-CCEEEEcCC---hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHH
Confidence 33 2322 3 799999999 9999886 6779999999999 9889999999999999999999999999999999
Q ss_pred HHHHHhcCCC-CccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 441 YLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 441 yl~~~~~G~p-P~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
||+|++||+| ||||||||+|||+|+++|++|||||++||+++++|.
T Consensus 246 ~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~~~~~~ 292 (294)
T 1nnh_A 246 YLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIPA 292 (294)
T ss_dssp HHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTSCC
T ss_pred HHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCCCCccc
Confidence 9999999999 999999999999999999999999999999999863
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-25 Score=219.29 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=117.4
Q ss_pred cCCCCceEEEEEeEEEEEccCCCCCCCCccccChhhhhhcccccCCChhhHHHHHH-----HHHHHHHHHHhhhcCCeEE
Q 011364 95 SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-----RNALAYATHKFFQENGFIW 169 (487)
Q Consensus 95 ~~~~~~~~el~~~~i~vls~~~~~~p~~~~~~~~~~~r~~r~l~~R~~~~~~~~~~-----Rs~i~~~iR~ff~~~gF~E 169 (487)
.+++.+++||++++++||++|..++|++.++. ...+++||||+|++.++++++. ++++.+.+|++|.++||.|
T Consensus 20 ~~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~E 97 (290)
T 3qtc_A 20 GASAPALTKSQTDRLEVLLNPKDEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLE 97 (290)
T ss_dssp ----CCCCHHHHHHHHHHCCTTCC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCceEEEEhhhhhhhccCCCCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEE
Confidence 34456789999999999999987788876543 2366899999999999999999 9999999999999999999
Q ss_pred EeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc--cchhhhHHHH--h---cc
Q 011364 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT--VSGQLNAETY--A---TA 242 (487)
Q Consensus 170 V~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~Spql~l~ll--~---~g 242 (487)
|.||+|++..+.. . +.++..++ + ..+..+++...+|+ +||++++.+. . .+
T Consensus 98 V~Tp~l~~~~~~~--~-~~~~~~~p---------~-----------~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~ 154 (290)
T 3qtc_A 98 IKSPILIPLEYIE--R-MGIDNDTE---------L-----------SKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPD 154 (290)
T ss_dssp ECCCSEEETHHHH--H-TTCCTTSS---------G-----------GGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCS
T ss_pred EECCceeeHHHHH--h-cCCCcCCc---------h-----------hhhheeeCCCeeEcccChHHHHHHHHHhhccCCC
Confidence 9999999874311 0 10111110 0 00123456778899 9999996543 2 44
Q ss_pred CCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 243 ~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
..|+||||+|||+|.. +.+|++||||+|+++++.+
T Consensus 155 p~rlfeiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~~ 189 (290)
T 3qtc_A 155 PIKIFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSG 189 (290)
T ss_dssp SEEEEEEEEEECCCSC-SSSCCSEEEEEEEEEESTT
T ss_pred CeEEEEEcCEEecCCC-CCcCcchheEEEEEEEcCC
Confidence 5799999999999976 6889999999999998753
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=186.82 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHHhhh-----cCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 147 VARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-----~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
.++.....+..+++||. +.|+++|..|+++....+=. +.+.- ++. .++-+.
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~Gln-D~LnG--------------~Er---------pV~f~i 59 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQ-DNLSG--------------AEK---------AVQVKV 59 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCS-CCTTT--------------TCC---------CCEECC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCC-CCCCC--------------cee---------cceEec
Confidence 35667789999999999 99999999999998543211 10100 000 000111
Q ss_pred c---CcccccccchhhhHHHHh-c-cC---CceEEEecccccCCC-CCCcccccccceeeEEccCCHHHHHHHHHHHHHH
Q 011364 222 F---EKPAFLTVSGQLNAETYA-T-AL---SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACATAYLQY 292 (487)
Q Consensus 222 ~---~~~~~L~~Spql~l~ll~-~-g~---~kvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~ 292 (487)
+ +..+-..+|--.|||+.. . +| +.+|.-.++.|.|+. .+.+|.-+|+|.|||......+..|+..++.++.
T Consensus 60 ~~~~~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~ 139 (330)
T 12as_A 60 KALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEA 139 (330)
T ss_dssp SSSTTCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHH
T ss_pred ccCCCceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHH
Confidence 1 556678899999998543 3 47 899999999997654 5799999999999999998888899999999888
Q ss_pred HHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccC
Q 011364 293 VVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGG 372 (487)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~ 372 (487)
+...+..... .+ .. .+ .+...+..++..+|.+|+.+.+ +..-..+.|..++..+
T Consensus 140 Iy~~ik~tE~-~~---~~----~y--~l~p~Lp~~i~fitsqeL~~~Y-------------P~lt~keRE~~i~ke~--- 193 (330)
T 12as_A 140 IWAGIKATEA-AV---SE----EF--GLAPFLPDQIHFVHSQELLSRY-------------PDLDAKGRERAIAKDL--- 193 (330)
T ss_dssp HHHHHHHHHH-HH---HH----HS--CCCCCSCSSCEEEEHHHHHHHS-------------SSSCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHH-HH---HH----Hh--ccCcCCCCceEEEeHHHHHHHc-------------CCCChHHHHHHHHHhh---
Confidence 8777653211 00 00 00 0112245567778888876542 1112234555566554
Q ss_pred ccEEEEecCCcCcc--ccccccC-CCCce---------EEEEEEe-c----CeeeeechhHhhchHHHHHHHHHHcCCCc
Q 011364 373 CPVIVSDYPKEIKA--FYMRQND-DGRTV---------AAMDMLV-P----RIGELIGGSQREERLEYLEGRLDELKLNR 435 (487)
Q Consensus 373 ~p~fi~~~P~~~~p--f~~~~~~-~~~~~---------~~fdl~~-~----G~~El~~G~~r~~~~~~~~~~~~~~g~~~ 435 (487)
++|||++.|..++- ++....+ .+.+. .+.|+++ + +..||.++++| -+++.+.++++..|...
T Consensus 194 gaVFii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~e 272 (330)
T 12as_A 194 GAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDED 272 (330)
T ss_dssp SEEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTT
T ss_pred CCEEEEecCCccCCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCCh
Confidence 69999999876532 2222222 22344 7899999 4 55799999999 79999999999999887
Q ss_pred ccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCccccccc
Q 011364 436 DSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIPF 478 (487)
Q Consensus 436 ~~~~~yl~~~~~G-~pP~~G~giGidRL~m~l~g~~~Irdv~~F 478 (487)
...-+|..++..| +|++.|.|||.+||||+|++..+|-+|++=
T Consensus 273 r~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ~s 316 (330)
T 12as_A 273 RLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQAG 316 (330)
T ss_dssp GGGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSCC
T ss_pred hhccHHHHHHHcCCCCccccccccHHHHHHHHhccchhheeecc
Confidence 7778899988888 599999999999999999999999999863
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.9e-18 Score=165.76 Aligned_cols=197 Identities=17% Similarity=0.229 Sum_probs=118.0
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc-
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV- 230 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~- 230 (487)
.++.+.+|++|...||.||.||.|++... |.... +.. .+ .. +. ..+..+...+|++
T Consensus 74 ~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l------~~~~g-~~~-~~-~m-----~~---------~~npl~e~~~LRp~ 130 (288)
T 3dsq_A 74 LELEEKLAKALHQQGFVQVVTPTIITKSA------LAKMT-IGE-DH-PL-----FS---------QVFWLDGKKCLRPM 130 (288)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHH------HHTTS-SCC----CC-----TT---------TSCEEETTEEECSC
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHHH------HhhcC-CCc-cc-cc-----EE---------eecccccchhhhhc
Confidence 67899999999999999999999997431 11000 000 00 00 00 0001123446663
Q ss_pred -chhhhH--HHHhccCC---ceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccc
Q 011364 231 -SGQLNA--ETYATALS---NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED 304 (487)
Q Consensus 231 -Spql~l--~ll~~g~~---kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~ 304 (487)
+|.+.. +.....-+ |+|+||+|||+|.. +..|.+||+|+|++....+
T Consensus 131 l~p~l~~~~r~~~~~~~~PlrlfeiG~vFR~E~~-~~~r~~EF~qle~~i~g~~-------------------------- 183 (288)
T 3dsq_A 131 LAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQ-GAQHLNEFTMLNLTELGTP-------------------------- 183 (288)
T ss_dssp SHHHHHHHHHHHTTTSCSCEEEEEEEEEECSCCS-SSCCCSEEEEEEEEEETCC--------------------------
T ss_pred ChHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCC-CCCcCccEEEEEEEEEcCC--------------------------
Confidence 455542 32323233 89999999999987 6789999999999986531
Q ss_pred cccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcC
Q 011364 305 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 384 (487)
Q Consensus 305 l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~ 384 (487)
..+++.++..++... + +.++-....+ +. |
T Consensus 184 ------------------------~~~~f~elkg~le~l---------------------l-~~LGl~~~~~-~~-~--- 212 (288)
T 3dsq_A 184 ------------------------LEERHQRLEDMARWV---------------------L-EAAGIREFEL-VT-E--- 212 (288)
T ss_dssp ------------------------GGGHHHHHHHHHHHH---------------------H-HHHTCCCCEE-EE-C---
T ss_pred ------------------------chhhHHHHHHHHHHH---------------------H-HHcCCCCcEE-ec-C---
Confidence 011223333222211 0 0000000000 00 0
Q ss_pred ccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcC-CCCccceeccHHHHH
Q 011364 385 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPHAGFGLGFERLV 463 (487)
Q Consensus 385 ~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G-~pP~~G~giGidRL~ 463 (487)
. ..-...++|++++|. ||++|+.+.+..+. ++| .|||+|||||+|||+
T Consensus 213 ------s--~e~~~~~~~l~~~~~-eig~~Gv~p~vl~~----------------------~~gi~~~~~gfglglerl~ 261 (288)
T 3dsq_A 213 ------S--SVVYGDTVDVMKGDL-ELASGAMGPHFLDE----------------------KWEIFDPWVGLGFGLERLL 261 (288)
T ss_dssp ------C--CCSSCCCEEEEETTE-EEEEEEEESCTTTT----------------------TTTCCSCEEEEEEEHHHHH
T ss_pred ------C--cceEEEEEEEEeCCE-EEEEEEecHHHHHH----------------------hcCCCCCeEEEEECHHHHH
Confidence 0 011245689999996 99999966543311 567 479999999999999
Q ss_pred HHHcCCCCcccccccCC
Q 011364 464 QFATGVENIRDAIPFPR 480 (487)
Q Consensus 464 m~l~g~~~Irdv~~FPr 480 (487)
|+++|.+|||++..-.-
T Consensus 262 m~~~g~~~iR~~~~~~~ 278 (288)
T 3dsq_A 262 MIREGTQHVQSMARSLS 278 (288)
T ss_dssp HHHHTCSCGGGGSSCSS
T ss_pred HHHcCCchhhcCCCCcc
Confidence 99999999999876443
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=158.33 Aligned_cols=131 Identities=10% Similarity=-0.003 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCC-ceeeecCCCcccccCCCCCC-CC----CCCCCCccccccccCcc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQ-FCVTTLIPSSREAAESPVDA-IP----KTKDGLIDWSQDFFEKP 225 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~-F~vt~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~ 225 (487)
+++.+.||++|..+||.||.+|.+.+..- ..... + ..+|+++..++... +.+ .+ ..|... .+ ..-
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~-nfd~L~~-p~~hpar~~~dt~~-l~nP~s~~~~~~~~~~----~~--~~v 174 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFF-NFDALNI-PEHHPARDMWDTFW-LTGEGFRLEGPLGEEV----EG--RLL 174 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHH-HTTTTTC-CSSSTTTTSSCCCB-EECSSCCCBCTTSCBC----CS--CEE
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchh-HHHhhCC-CCCCccccccccEE-EcCccccccccccccc----cc--cce
Confidence 55889999999999999999999976310 00000 1 11111111000000 000 00 000000 00 011
Q ss_pred cccccchhhhHHHHhccC--CceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHHH
Q 011364 226 AFLTVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 293 (487)
Q Consensus 226 ~~L~~Spql~l~ll~~g~--~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~ 293 (487)
+..++||.+. +++..+- -|+|+||+|||+|+. +.+|+|||+|||+++++. |+.+++..++.+++.+
T Consensus 175 LRt~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 175 LRTHTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp ECSSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred eeccchHHHH-HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 2344555553 6665543 379999999999886 578999999999999986 6788877777766654
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=142.89 Aligned_cols=122 Identities=9% Similarity=0.035 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (487)
.+++.+.||++|..+||.||++|.+.+... +....+..++++ +.+. .+.-|......|++
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~-nf~~l~~~~~~p------ar~~-------------~d~~~l~e~~vLRt 114 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYY-NFEALNLPKSHP------ARDM-------------QDSFYITDEILMRT 114 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHH-HTGGGTCCTTCG------GGCT-------------TTSCBSSSSEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehh-hHHhhCCCCCcc------cccc-------------CCcEEEcCcceeec
Confidence 456889999999999999999999876310 000110011111 0000 00011123345766
Q ss_pred chhhhH-HHHhcc----CCceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHHHHH
Q 011364 231 SGQLNA-ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 293 (487)
Q Consensus 231 Spql~l-~ll~~g----~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~~ 293 (487)
|.--.+ ++++.+ -.|+||||+|||+++. +.+|+|||+|||+++++ .|+.+++..+|.+++.+
T Consensus 115 sl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 115 HTSPVQARTMEKRNGQGPVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp SSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCCCCccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 666665 787776 5699999999999875 57899999999999998 57888888887777655
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-14 Score=142.29 Aligned_cols=198 Identities=20% Similarity=0.307 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCccccccc-
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV- 230 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~- 230 (487)
+.+.+.||++|...||.|+.+|.+.+..- .| +..+.+.+|++.. ..+.-|.+....|++
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~-----nF--d~Ln~p~dhpaR~-------------~~dt~~i~e~~vLRTh 169 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYH-----NF--DALNIPGHHPARA-------------DHDTFWFDTTRLLRTQ 169 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCC-----CC--CTTTCCSSSHHHH-------------HTTCCBSSSSCEECSC
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHH-----HH--HhhCCCCCChhhc-------------ccccEEeCCCceeccc
Confidence 44788999999999999999998865321 01 2222222221110 000112232333444
Q ss_pred -chhhhHHHHhccCC--ceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHHHHHHHHhhccCcccc
Q 011364 231 -SGQLNAETYATALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVVRYILDNCKEDM 305 (487)
Q Consensus 231 -Spql~l~ll~~g~~--kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~~~~~~~~~~~~~l 305 (487)
||.+ ++.+..+-. |+|++|+|||++ . +.+|+|+|+|+|+.... .++.++...++.+++.++.. ++
T Consensus 170 tsp~~-lr~l~~~~~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg~-------~~ 239 (327)
T 3pco_A 170 TSGVQ-IRTMKAQQPPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEE-------DL 239 (327)
T ss_dssp THHHH-HHHHTTCCSSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHCS-------CS
T ss_pred CCHHH-HHHHHhCCCCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhCC-------Cc
Confidence 4444 366665544 899999999998 4 78999999999987653 35666666666665554310 00
Q ss_pred ccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCcCc
Q 011364 306 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 385 (487)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~ 385 (487)
+ +. +.+.+ -
T Consensus 240 ----------------------------------------~----vr------------~rps~---------------f 248 (327)
T 3pco_A 240 ----------------------------------------Q----IR------------FRPSY---------------F 248 (327)
T ss_dssp ----------------------------------------E----EE------------EEEEC---------------C
T ss_pred ----------------------------------------e----EE------------EecCc---------------C
Confidence 0 00 01111 1
Q ss_pred cccccccCCCCceEEEEEEe-cC-eeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHH
Q 011364 386 AFYMRQNDDGRTVAAMDMLV-PR-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLV 463 (487)
Q Consensus 386 pf~~~~~~~~~~~~~fdl~~-~G-~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~ 463 (487)
||+.| +...|+++ +| +-||+++++-. .+.+++.|++++.| +.-.||||+|||+
T Consensus 249 PfteP-------s~eadI~~~~G~w~EIgg~G~VH------P~Vl~~~gid~~~~------------~g~AFglgleRla 303 (327)
T 3pco_A 249 PFTEP-------SAEVDVMGKNGKWLEVLGCGMVH------PNVLRNVGIDPEVY------------SGFAFGMGMERLT 303 (327)
T ss_dssp TTEEE-------EEEEEEECSSSCEEEEEEEEEEC------HHHHHTTTCCTTTC------------EEEEEEEEHHHHH
T ss_pred CCCCC-------cEEEEEEEeCCCeEEEEEEEEEC------HHHHHHcCCCCccc------------eEEEEEechHHHH
Confidence 66654 56678888 55 22899988876 55666777765321 2347899999999
Q ss_pred HHHcCCCCcccc
Q 011364 464 QFATGVENIRDA 475 (487)
Q Consensus 464 m~l~g~~~Irdv 475 (487)
|+..|+++||+.
T Consensus 304 ml~~~i~diR~~ 315 (327)
T 3pco_A 304 MLRYGVTDLRSF 315 (327)
T ss_dssp HHHHTCSCGGGG
T ss_pred HHHcCCcHHHHH
Confidence 999999999964
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=136.57 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=42.6
Q ss_pred EEEEEEecC---eeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccc
Q 011364 399 AAMDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 399 ~~fdl~~~G---~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv 475 (487)
...+++++| +-||+++++-. .+.++..|++.+ .|.-+||||+|||+|+..|++|||+.
T Consensus 417 ~ev~i~~~G~~~W~EIGg~G~vh------P~VL~~~Gipe~-------------~~v~AfgLgLeRLaml~~gi~diR~l 477 (508)
T 3l4g_A 417 MEVFSYHQGLKKWVEVGNSGVFR------PEMLLPMGLPEN-------------VSVIAWGLSLERPTMIKYGINNIREL 477 (508)
T ss_dssp EEEEECCSTTSSCEEEEEEECCC------HHHHGGGTCCTT-------------EEEEEEEEESHHHHTTTTTCSCGGGT
T ss_pred EEEEEEECCccceEEEEeeeeEc------HHHHHHCCCCCC-------------ceEEEEEecHHHHHHHHcCCcHHHHH
Confidence 344666677 23999988776 555556555211 14568899999999999999999986
Q ss_pred c
Q 011364 476 I 476 (487)
Q Consensus 476 ~ 476 (487)
.
T Consensus 478 ~ 478 (508)
T 3l4g_A 478 V 478 (508)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-09 Score=110.75 Aligned_cols=104 Identities=13% Similarity=0.230 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhhcC--------CeEEEeC-CeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc
Q 011364 152 NALAYATHKFFQEN--------GFIWISS-PIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (487)
Q Consensus 152 s~i~~~iR~ff~~~--------gF~EV~T-P~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (487)
+.+.+.||++|... ||.|+.+ |.+.+.. ..| +.++.+.+|++.+ ..+.=|.
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~-----~NF--d~L~~p~dHpaR~-------------~~Dtfyi 110 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTW-----QNF--DSLLIPADHPSRK-------------KGDNYYL 110 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHH-----HHT--GGGTCCTTCGGGC-------------GGGSCBS
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHH-----HHH--HHhCCCCCCCccc-------------ccceEEe
Confidence 34667777777776 9999998 6666421 012 2333322222211 0112233
Q ss_pred CcccccccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEcc
Q 011364 223 EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (487)
Q Consensus 223 ~~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (487)
+...-|+++.--++ +++..+..|+|++|+|||++.. +..|.|+|.|+|--..|
T Consensus 111 ~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 111 NRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp SSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred cCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 55556776655554 6777777899999999999987 68999999999976654
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.1e-07 Score=95.15 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=33.9
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 290 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li 290 (487)
|+|+||+|||+|...+..|.+||+|++..+.+. |+.++...++.++
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL 254 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALL 254 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHH
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHH
Confidence 799999999987541467999999999998763 4555555444443
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.59 E-value=6e-07 Score=94.55 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=32.0
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAY 289 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~l 289 (487)
|+|++|+|||++...+.+|.+||+||+.-+.+. |+.++...+|.+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~l 265 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGL 265 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHH
Confidence 799999999987641256999999999988763 344444444333
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.47 E-value=9.3e-07 Score=93.87 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=33.3
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 290 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li 290 (487)
|+|+||+|||++...+.+|.+||+||+.-++.. |+.++...+|.++
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (648)
T 2odr_B 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (648)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 799999999987531467999999999888763 4555544444443
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.47 E-value=9.9e-07 Score=93.75 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=33.3
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 290 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li 290 (487)
|+|+||+|||++...+.+|.+||+||+.-++.. |+.++...+|.++
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (665)
T 2odr_A 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (665)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 799999999987531467999999999888763 4555544444443
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=93.78 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=33.3
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 290 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li 290 (487)
|+|+||+|||++...+.+|.+||+||+.-++.. |+.++...+|.++
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL 273 (685)
T 2odr_D 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (685)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 799999999987531467999999999888763 4555544444443
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=93.58 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=33.3
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 290 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li 290 (487)
|+|+||+|||++...+.+|.+||+||+.-++.. |+.++...+|.++
T Consensus 226 RLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL 273 (701)
T 2odr_C 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (701)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 799999999987531467999999999888763 4555544444443
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-06 Score=89.38 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-.-.+++..|.+.+|+.|.+.||.||.||+|.+..- .| ..+.|. .+.
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~-~d~------------------------ 81 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSS------------------------ 81 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE-EEE------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe-Eec------------------------
Confidence 346788899999999999999999999999998541 01 012222 110
Q ss_pred ccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCCCCc----ccccccceeeEEccCCHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMA 284 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm~ 284 (487)
-+..++|+...+... ++.+.. + -|+|+|++|||+|.. +++ -.-||+|.|+|. |.+..+...
T Consensus 82 -----~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~~~~~~~~ 154 (401)
T 1evl_A 82 -----ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQIRD 154 (401)
T ss_dssp -----TTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGHHH
T ss_pred -----CCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCC-cccccccccCcEEecceEE-eCCHHHHHH
Confidence 034556666555444 444322 2 389999999999975 233 247999999995 666555554
Q ss_pred HHHHHHH
Q 011364 285 CATAYLQ 291 (487)
Q Consensus 285 ~~e~li~ 291 (487)
..++++.
T Consensus 155 e~~e~i~ 161 (401)
T 1evl_A 155 EVNGCIR 161 (401)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.8e-06 Score=88.13 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC----C----CCCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----E----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----e----g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++.+|.+.+|+.|.+.||.||.||++.+..- + -..+.|.+++.+
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~---------------------- 120 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRH---------------------- 120 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTT----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCC----------------------
Confidence 4567888999999999999999999999999998531 1 112334332211
Q ss_pred cccccccCcccccccch-hhh--H-HHHhccC----CceEEEecccccCCCCCCc----ccccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSG-QLN--A-ETYATAL----SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Sp-ql~--l-~ll~~g~----~kvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm 283 (487)
++.++|+... +.. . +..+... -|+|+|++|||+|.. .+ -..||+|.|+|.-..+..+.-
T Consensus 121 -------~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~--p~~Gl~R~REF~q~d~~~f~~~~~~ad 191 (458)
T 2i4l_A 121 -------KRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQR--PRFGVMRGREFLMKDAYSFDVDEAGAR 191 (458)
T ss_dssp -------CCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSS--CBTGGGBCSEEEEEEEEEEESSHHHHH
T ss_pred -------CCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCC--CCCCcccccceEEeEEEEEECCHHHHH
Confidence 3455565432 222 1 2222222 389999999999932 23 347999999999766766554
Q ss_pred HHHHHH
Q 011364 284 ACATAY 289 (487)
Q Consensus 284 ~~~e~l 289 (487)
.....+
T Consensus 192 ~e~~~~ 197 (458)
T 2i4l_A 192 KSYNKM 197 (458)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.6e-06 Score=82.20 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC----------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC----------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.+.+..|.+.+|+.|...||.||.||++..... ....+.|.+.+..
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~---------------------- 91 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE---------------------- 91 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCC----------------------
Confidence 45678889999999999999999999999988421 1112334332211
Q ss_pred cccccccCcccccccchhhh--H-HHHhcc----CCceEEEecccccCCCCCCcccccccceeeEEccCCH
Q 011364 216 DWSQDFFEKPAFLTVSGQLN--A-ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 279 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~--l-~ll~~g----~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~ 279 (487)
++.+.|+ |++- . ++++.. --|.|+|++|||+|.. ..-+.-||+|+++|.-..+-
T Consensus 92 -------g~~l~LR--pd~T~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p-~~gR~REF~Q~g~ei~g~~~ 152 (344)
T 1z7m_A 92 -------GQSITLR--YDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKR-HKGRSTENYQIGIELFGESA 152 (344)
T ss_dssp -------CCEEEEC--CCSHHHHHHHHHTCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSCH
T ss_pred -------CCEEecC--CCCcHHHHHHHHhcCCCCCeEEEEECcEEccCCC-CCCCcceeEEEEEEEEcCCC
Confidence 2222232 2222 2 444332 2389999999999976 34477899999999976653
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.4e-06 Score=87.47 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
-.-.+++..|.+.+++.+.+.||.||.||+|.....- |.-..|. .+.
T Consensus 169 p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~------------------------------~em 218 (425)
T 2dq3_A 169 GWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFE------------------------------EDL 218 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTG------------------------------GGS
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcCh------------------------------hhh
Confidence 4567788999999999999999999999999986420 1001110 011
Q ss_pred c---CcccccccchhhhH-HHHhc------cC-CceEEEecccccCCCCC--Cc----ccccccceeeEEccCCHHHHHH
Q 011364 222 F---EKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--SR----HLAEFWMIEPELAFADLKDDMA 284 (487)
Q Consensus 222 ~---~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~~t--~r----Hl~EFtmlE~e~~~~~~~~lm~ 284 (487)
| +.++||+...+... .+... .+ -|+|++++|||+|.... .+ -..||+|.|.+. |++-++..+
T Consensus 219 y~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~ 297 (425)
T 2dq3_A 219 YKCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYD 297 (425)
T ss_dssp CBCTTTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHH
T ss_pred eEecCCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHH
Confidence 1 34456665554433 32221 12 38999999999997420 11 235999999976 555555555
Q ss_pred HHHHHHHHH
Q 011364 285 CATAYLQYV 293 (487)
Q Consensus 285 ~~e~li~~~ 293 (487)
..++++..+
T Consensus 298 ~~~e~i~~~ 306 (425)
T 2dq3_A 298 ELEKLVKDA 306 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.4e-06 Score=88.47 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C--CC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.+++..|.+.+|+.|.+.||.||.||+|..... . +. .+.|.+++.+
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~---------------------- 71 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG---------------------- 71 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCC----------------------
Confidence 45778899999999999999999999999998532 1 11 1233332110
Q ss_pred cccccccCcccccccchhhhH-HHHhc-------cC-CceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT-------AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDD 282 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~-------g~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~l 282 (487)
++.++|+.-..... ++++. .+ -|+|+|++|||+|.. ..-+.-||+|+|+|.-..+ . .++
T Consensus 72 -------g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~-~~gR~reF~q~~~e~~~~~~~~~d~e~ 143 (420)
T 1qe0_A 72 -------DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERK-QKGRYRQFNQFGVEAIGAENPSVDAEV 143 (420)
T ss_dssp -------HCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCCCHHHHHHH
T ss_pred -------CCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCC-cCCCcccEEEeeEEEECCCCchhHHHH
Confidence 23444443333322 33321 22 389999999999966 3445789999999987664 2 344
Q ss_pred HHHHHHHHH
Q 011364 283 MACATAYLQ 291 (487)
Q Consensus 283 m~~~e~li~ 291 (487)
+.++.++++
T Consensus 144 i~~~~~~l~ 152 (420)
T 1qe0_A 144 LAMVMHIYQ 152 (420)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=84.00 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C------CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
-.-.+++..|.+.+|+.|.+.||.||.||++.+..-- + ..+.|.+++...
T Consensus 41 P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~--------------------- 99 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGG--------------------- 99 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESS---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCC---------------------
Confidence 3567788999999999999999999999999986531 1 123343332110
Q ss_pred cccccccCcccccccchhh-----hHHHHhc--cC-CceEEEecccccCCC-CCCcccccccceeeEEccCCHHHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQL-----NAETYAT--AL-SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql-----~l~ll~~--g~-~kvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
+=.+.+++|+.-.+- |.+.+.+ .+ -|+|||++|||+|.. ++---.-||+|.|++..+++..+....+
T Consensus 100 ----~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~ 175 (477)
T 1hc7_A 100 ----EELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEV 175 (477)
T ss_dssp ----SEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHH
T ss_pred ----ccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHH
Confidence 001244556655443 2322222 23 289999999999943 2201235999999999999887776666
Q ss_pred HHHH
Q 011364 287 TAYL 290 (487)
Q Consensus 287 e~li 290 (487)
..++
T Consensus 176 ~~~l 179 (477)
T 1hc7_A 176 RRML 179 (477)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=8e-06 Score=89.31 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++..|.+.+|+.|.+.||.||.||+|....- .| ..+.|.+++.
T Consensus 267 lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~----------------------- 323 (645)
T 1nyr_A 267 LPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQL----------------------- 323 (645)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEE-----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEec-----------------------
Confidence 4567889999999999999999999999999998531 01 0122221110
Q ss_pred cccccccC-cccccccchhhhH-HHHhcc------C-CceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHH
Q 011364 216 DWSQDFFE-KPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 216 ~~~~~~~~-~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (487)
-+ +.++|+.-..... ++.+.. + -|+|+||+|||+|.+ +.+| .-||||.|+|. |.+.+++
T Consensus 324 ------~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~-~~~~GL~R~ReF~Q~d~~~-f~~~~~~ 395 (645)
T 1nyr_A 324 ------DETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS-GAVSGLQRVRGMTLNDSHI-FVRPDQI 395 (645)
T ss_dssp ------TTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT-TTCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred ------CCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCC-ccccCcceeeeEEEccEEE-EcCHHHH
Confidence 03 4445555444443 444432 1 289999999999987 3433 37999999998 6665555
Q ss_pred HHHHHHHHHHH
Q 011364 283 MACATAYLQYV 293 (487)
Q Consensus 283 m~~~e~li~~~ 293 (487)
.+...+++..+
T Consensus 396 ~d~~~e~i~~~ 406 (645)
T 1nyr_A 396 KEEFKRVVNMI 406 (645)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444444433
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=81.98 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC--C--C---CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G---AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~--e--g---~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-.-.+++.+|.+.+|+-|...||.||.||++.+... . | ..+.|.+++.+
T Consensus 17 P~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~------------------------ 72 (434)
T 1wu7_A 17 PEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKG------------------------ 72 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCC------------------------
Confidence 345778899999999999999999999999998532 0 1 12344443221
Q ss_pred cccccCcccccccchhhhH-HHHhcc----C-CceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETYATA----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll~~g----~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
++.+.|+.-.-... ++.+.. + -|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 73 -----g~~l~LrPd~t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~-~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 73 -----GREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 133 (434)
T ss_dssp -----SCEEEECSCSHHHHHHHHTTCTTCCSSEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred -----CCEEEeCCCChHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCC-CCCccceEEeeEEEEcCC
Confidence 23333332222222 443322 2 3899999999999763 335689999999997665
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.8e-05 Score=85.27 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++.+|.+.+|+.|.+.||.||.||++.+..-- | ..+.|.+++..
T Consensus 43 lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~---------------------- 100 (572)
T 2j3l_A 43 LPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRN---------------------- 100 (572)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTT----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCC----------------------
Confidence 44678889999999999999999999999999985310 1 11233332111
Q ss_pred cccccccCcccccccchhhhH-HHHhc------cC-CceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (487)
++.++|+.-.+-.. ++... .+ -|+|+|++|||+|.. + +| .-||+|.|+|.-..+-.+..
T Consensus 101 -------~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~ 171 (572)
T 2j3l_A 101 -------DRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLD 171 (572)
T ss_dssp -------CCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHH
T ss_pred -------CCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHH
Confidence 34455544443322 32222 12 289999999999976 3 33 36999999998766666665
Q ss_pred HHHHHH
Q 011364 284 ACATAY 289 (487)
Q Consensus 284 ~~~e~l 289 (487)
..++.+
T Consensus 172 ~e~~~~ 177 (572)
T 2j3l_A 172 QSYRDY 177 (572)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.6e-06 Score=84.97 Aligned_cols=126 Identities=17% Similarity=0.103 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHhh-hcCCeEEEeCCeeeccCC---CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff-~~~gF~EV~TP~L~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
.-.-.+++..|.+.+|+.+ .+.||.||.||+|.+..- .|. .+.|.+++.+
T Consensus 60 lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~--------------------- 118 (460)
T 3uh0_A 60 LPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTD--------------------- 118 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC-----------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCC---------------------
Confidence 3456888899999999999 999999999999987532 011 1223221110
Q ss_pred ccccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCC---CCcccccccceeeEEccCCHHHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~---t~rHl~EFtmlE~e~~~~~~~~lm 283 (487)
--+.+++|+...+... ++.... + -|+|++++|||+|... +-.=.-||+|.|.+. |++-++..
T Consensus 119 ------~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~ 191 (460)
T 3uh0_A 119 ------EEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVK 191 (460)
T ss_dssp ----------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHH
T ss_pred ------CCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHH
Confidence 0024455655544444 443332 1 2799999999999762 211235999999996 67666666
Q ss_pred HHHHHHHHHHHHHh
Q 011364 284 ACATAYLQYVVRYI 297 (487)
Q Consensus 284 ~~~e~li~~~~~~~ 297 (487)
+.+++++..+..-+
T Consensus 192 ~e~~~~i~~~~~~~ 205 (460)
T 3uh0_A 192 SEIFNSLKLIDIVY 205 (460)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665554433
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.92 E-value=4e-05 Score=78.82 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
-.-.+++..|.+.+|+.|...||.||.||++..... ....+.|.+.+.+
T Consensus 21 P~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~------------------------- 75 (400)
T 3od1_A 21 PEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQ------------------------- 75 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCC-------------------------
Confidence 345678889999999999999999999999977542 0112234332211
Q ss_pred ccccCcccccccchhhh--H-HHHhcc-----C-CceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 219 QDFFEKPAFLTVSGQLN--A-ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~--l-~ll~~g-----~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
|+.+-|+ |++- . ++++.. . -|.|+|++|||+|... .-+.-||+|+++|.-..+
T Consensus 76 ----g~~l~LR--pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 76 ----GNTLVLR--PDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp ----SCEEEEC--SCSHHHHHHHHHHHCSSSCSCEEEEEEEEEECCCC----CCCSEEEEEEEEEESCC
T ss_pred ----CCEEEEC--CCCHHHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCC
Confidence 2222222 2222 1 333332 2 3899999999999763 446689999999986654
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.4e-05 Score=80.97 Aligned_cols=103 Identities=19% Similarity=0.329 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.+++.+|.+.+|+-|...||.||.||++.+... . |. .+.|.+++.+
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~---------------------- 72 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG---------------------- 72 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCC----------------------
Confidence 35678889999999999999999999999998532 1 11 1344443211
Q ss_pred cccccccCcccccccchhhhH-HHHh-ccC------CceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYA-TAL------SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~-~g~------~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
++.+.|+.-.-... ++.+ ... -|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 73 -------g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 73 -------GRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSE 135 (421)
T ss_pred -------CCEEeeCCcchHHHHHHHHhccccccCCCeEEEEecCeecCCCCC-CCCcccEEEccEEEECCC
Confidence 22222322111112 3333 212 3899999999999763 335689999999987654
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.8e-05 Score=80.50 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.+++.+|.+.+|+-|...||.||.||++.+... . |. .+.|.+++.+
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~---------------------- 73 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRN---------------------- 73 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCC----------------------
Confidence 45778899999999999999999999999998532 0 11 1455543321
Q ss_pred cccccccCcccccccchhhhH-HHHh-cc-----CCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYA-TA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~-~g-----~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
++.+.|+.-.-... ++.+ .. --|.|+|+++||+|... .-+.-||+|.++|.-..+
T Consensus 74 -------g~~l~Lrpd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 74 -------GDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp -------SCEEEECSCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCC
T ss_pred -------CCEEEeCCCchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCC-CCccceeEEeeEEEECCC
Confidence 22222322111112 3333 21 13899999999999763 345689999999987655
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=4.3e-05 Score=80.07 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC----CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
.-.-.+++..|.+.+|+.|.+.||.||.||++.+... .| ..+.|.+++...
T Consensus 34 lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~-------------------- 93 (459)
T 1nj8_A 34 LPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGK-------------------- 93 (459)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSS--------------------
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCc--------------------
Confidence 3456778899999999999999999999999998531 11 123444432210
Q ss_pred ccccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCCCCc---cccccc-ceeeEEccCCHHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR---HLAEFW-MIEPELAFADLKDD 282 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~t~r---Hl~EFt-mlE~e~~~~~~~~l 282 (487)
+--+.+++|+.-.+... ++.+.. + -|+|||++|||+|.. +.+ -.-||+ |.|.+..+++..+.
T Consensus 94 -----~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~-~~rGl~R~REF~qq~d~~~~~~~~~~a 167 (459)
T 1nj8_A 94 -----TQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK-HTRPLIRLREIMTFKEAHTAHSTKEEA 167 (459)
T ss_dssp -----SEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS-CCBTTTBCSBCSCEEEEEEEESSHHHH
T ss_pred -----ccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccC-CCCCceEeeeeeccCcEEEEECCHHHH
Confidence 00134556665555544 444322 2 289999999999975 111 225999 99999988988777
Q ss_pred HHHHHHHHHH
Q 011364 283 MACATAYLQY 292 (487)
Q Consensus 283 m~~~e~li~~ 292 (487)
....++++..
T Consensus 168 ~~e~~~~i~~ 177 (459)
T 1nj8_A 168 ENQVKEAISI 177 (459)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.5e-05 Score=81.59 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CC--------CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG--------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg--------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
-.-.+++..|.+.+|+.|.+ ||.||.||+|.+..- .+ ..+.|.+++...
T Consensus 68 P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~--------------------- 125 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGL--------------------- 125 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETT---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCC---------------------
Confidence 45677888999999999999 999999999998542 11 123454432110
Q ss_pred cccccccCcccccccchhhhH-HHHhc------cC-CceEEEecccccCCCCCCc--cccccc-ceeeEEccCCHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSR--HLAEFW-MIEPELAFADLKDDMA 284 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~~t~r--Hl~EFt-mlE~e~~~~~~~~lm~ 284 (487)
+--+.+++|+...+... ++.+. .+ -|+|++++|||+|..++.= =.-||+ |.|.+..+++.++..+
T Consensus 126 ----~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~ 201 (501)
T 1nj1_A 126 ----SKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEE 201 (501)
T ss_dssp ----EEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHH
T ss_pred ----cccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHH
Confidence 00023456665555544 43322 12 2899999999999752110 124999 9999998898887777
Q ss_pred HHHHHHHH
Q 011364 285 CATAYLQY 292 (487)
Q Consensus 285 ~~e~li~~ 292 (487)
.+++++..
T Consensus 202 e~~~~l~~ 209 (501)
T 1nj1_A 202 QVERAVEI 209 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.7e-05 Score=80.79 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---C-CC------CCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
-.-.+++..|.+.+|+.|...||.||.||++..... . |. .+.|.+.+...
T Consensus 43 P~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~-------------------- 102 (467)
T 4e51_A 43 PQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALN-------------------- 102 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCC--------------------
Confidence 345778899999999999999999999999987532 0 11 13444322110
Q ss_pred ccccccccCcccccccchhhhH-HHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC--H--HHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--L--KDDM 283 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l-~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~--~~lm 283 (487)
++.+.|+.-.-... ++++.. --|.|++++|||+|... .-+.-||+|+++|.-..+ . .+++
T Consensus 103 --------g~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~-~gR~ReF~Q~d~ei~g~~~~~adaEvi 173 (467)
T 4e51_A 103 --------GENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQ-RGRYRQFHQVGVEALGFAGPDADAEIV 173 (467)
T ss_dssp --------CCEEEECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCCCSHHHHHHH
T ss_pred --------CCEEEeCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCC-CCCcCceEEEEEEEEeCCChHHHHHHH
Confidence 22233332222222 433321 23899999999999763 345689999999986543 2 2344
Q ss_pred HHHHHHHHH
Q 011364 284 ACATAYLQY 292 (487)
Q Consensus 284 ~~~e~li~~ 292 (487)
.++.++++.
T Consensus 174 ~l~~~~l~~ 182 (467)
T 4e51_A 174 MMCQRLWED 182 (467)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.2e-05 Score=80.32 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC-----CCCCCC-CceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-----CEGAGE-QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~-----~eg~~~-~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
-.-.+.|..+.+.+|+.|...||.||.||++.... ++...+ .|.+.+.++... ... + ..+
T Consensus 23 P~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~--------~~~----~--~~~ 88 (465)
T 3net_A 23 PSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNR--------QAE----K--DKS 88 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEeccccccc--------ccc----c--ccc
Confidence 34567788999999999999999999999995421 233344 676654410000 000 0 000
Q ss_pred ccccCcccccccchhhhH-HHHhcc-----C-CceEEEecccccCCCCCCcccccccceeeEEccCC--HH----HHHHH
Q 011364 219 QDFFEKPAFLTVSGQLNA-ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LK----DDMAC 285 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~l-~ll~~g-----~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~----~lm~~ 285 (487)
.+.-++.+.|+.-.-... |+++.. . -|.|+|++|||.|.. ..-+.-||+|+++|.-..+ .. |++.+
T Consensus 89 ~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~-~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l 167 (465)
T 3net_A 89 GDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERA-KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAI 167 (465)
T ss_dssp -----CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHH
T ss_pred cCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCC-CCCCcceeEEeeEEEECCCCccchhhHHHHHH
Confidence 000022223322111111 333221 2 399999999999976 3446689999999987653 12 46666
Q ss_pred HHHHHHHH
Q 011364 286 ATAYLQYV 293 (487)
Q Consensus 286 ~e~li~~~ 293 (487)
+-++++.+
T Consensus 168 ~~~~l~~l 175 (465)
T 3net_A 168 ITEIFEAV 175 (465)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66666544
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.4e-05 Score=81.84 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-...+++.++++.+++.+.++||.||.||.|..... ++.+ +.|.++..
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~------------------------ 260 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD------------------------ 260 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC------------------------
Confidence 457889999999999999999999999999998643 1222 23332110
Q ss_pred ccccccCcccccccchhhhHH-HHhcc------C-CceEEEecccccCCC-CC-----CcccccccceeeEEccCCHHH-
Q 011364 217 WSQDFFEKPAFLTVSGQLNAE-TYATA------L-SNVYTFGPTFRAENS-NT-----SRHLAEFWMIEPELAFADLKD- 281 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l~-ll~~g------~-~kvfeI~~~FR~E~~-~t-----~rHl~EFtmlE~e~~~~~~~~- 281 (487)
+.++||....+..+- +...- + =|+|++++|||+|.. .+ ---.-||+|.|.+. |+.-++
T Consensus 261 ------~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~ 333 (484)
T 3lss_A 261 ------GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQE 333 (484)
T ss_dssp ------SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTT
T ss_pred ------CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchH
Confidence 245567776666653 32221 1 279999999999963 11 11224999999975 655444
Q ss_pred -HHHHHHHHHHHH
Q 011364 282 -DMACATAYLQYV 293 (487)
Q Consensus 282 -lm~~~e~li~~~ 293 (487)
..+..++++...
T Consensus 334 ~s~~e~e~~~~~~ 346 (484)
T 3lss_A 334 ESWRHLEDMITTS 346 (484)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 666666665543
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=97.81 E-value=5.7e-05 Score=79.03 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC--CCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCcccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE--GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e--g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (487)
.-.+++..|.+.+|+.|...||.||.||++.....- +.+ +.|.+.+.+
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~------------------------- 95 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKG------------------------- 95 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSS-------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCC-------------------------
Confidence 356788899999999999999999999999886431 111 234432211
Q ss_pred ccccCcccccccchhhh--H-HHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 219 QDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 219 ~~~~~~~~~L~~Spql~--l-~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
|+.+-|+ |++- . ++++.. --|.|+|++|||+|... .-+.-||+|+++|.-..+
T Consensus 96 ----g~~l~LR--pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 96 ----GHRVALR--PEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp ----SCEEEEC--SCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC------CCEEEEEEEEEESCC
T ss_pred ----CCEEecC--CcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCC-CCCccceEEEEEEEEcCC
Confidence 2222222 2322 1 433332 23799999999999763 446789999999986653
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.7e-05 Score=84.98 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++..|.+.+|+.+.+.||.||.||+|.+..-- | ..+.|. ++..
T Consensus 267 lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~~---------------------- 323 (642)
T 1qf6_A 267 HNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSE---------------------- 323 (642)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEET----------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-eecC----------------------
Confidence 45678899999999999999999999999999985420 1 012222 1100
Q ss_pred cccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (487)
++.++|+.-..... ++.... + -|+|+||+|||+|.+ +.+| .-||||.|++. |++.+++.
T Consensus 324 -------~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~~ 394 (642)
T 1qf6_A 324 -------NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQIR 394 (642)
T ss_dssp -------TEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGHH
T ss_pred -------CceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcCHHHHH
Confidence 23445554444333 443322 2 289999999999976 2332 36999999998 66655555
Q ss_pred HHHHHHHHHH
Q 011364 284 ACATAYLQYV 293 (487)
Q Consensus 284 ~~~e~li~~~ 293 (487)
+..++++..+
T Consensus 395 ~e~~~~i~~~ 404 (642)
T 1qf6_A 395 DEVNGCIRLV 404 (642)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444433
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=97.77 E-value=3.9e-05 Score=79.34 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcccccccc--
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-- 222 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 222 (487)
-.-.+++..|.+.+++.+.+.||.||.||+|.+... |.-+-+-+ .+ ..+.|
T Consensus 163 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l------~~~sG~~~-----------~f----------~~emy~~ 215 (421)
T 1ses_A 163 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKA------FLGTGHFP-----------AY----------RDQVWAI 215 (421)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHH------HHHHTCTT-----------TT----------GGGSCBB
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHH------HHhcCCCC-----------cC----------chhcEEE
Confidence 357788899999999999999999999999998542 21110000 00 00111
Q ss_pred -CcccccccchhhhH-HHHhc------cC-CceEEEecccccCCC------CCCcccccccceeeEEccCC-HHHHHHHH
Q 011364 223 -EKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD-LKDDMACA 286 (487)
Q Consensus 223 -~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~------~t~rHl~EFtmlE~e~~~~~-~~~lm~~~ 286 (487)
+.+++|....+... .++.. .+ -|+|++++|||+|.+ ++---.-||+|.|++..... .++..+..
T Consensus 216 ~d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~ 295 (421)
T 1ses_A 216 AETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAF 295 (421)
T ss_dssp TTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHH
T ss_pred cCCeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHH
Confidence 23456665555544 22221 12 289999999999952 12012359999999874444 47776666
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
++++...
T Consensus 296 ~e~~~~~ 302 (421)
T 1ses_A 296 QELLENA 302 (421)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.3e-05 Score=77.21 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-----C-CC-CCCceeeecCCCcccccCCCCCCCCCCCCCCccccc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-----E-GA-GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-----e-g~-~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (487)
-.+++..|.+.+|+.|...||.||.||++..... + .. .+.|.+.+.+
T Consensus 36 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~-------------------------- 89 (373)
T 3rac_A 36 FAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGG-------------------------- 89 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCS--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCC--------------------------
Confidence 4677888999999999999999999999987432 0 11 2333332111
Q ss_pred cccCccccccc--chhhhHHHHhc------cCCceEEEecccccCCCC-----CCcccccccceeeEEccCC--H---HH
Q 011364 220 DFFEKPAFLTV--SGQLNAETYAT------ALSNVYTFGPTFRAENSN-----TSRHLAEFWMIEPELAFAD--L---KD 281 (487)
Q Consensus 220 ~~~~~~~~L~~--Spql~l~ll~~------g~~kvfeI~~~FR~E~~~-----t~rHl~EFtmlE~e~~~~~--~---~~ 281 (487)
++.+.|+. .|++. ++++. .--|.|+|++|||+|... ..-+.-||+|+++|.-..+ . -+
T Consensus 90 ---g~~l~LRpd~T~~~a-R~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaE 165 (373)
T 3rac_A 90 ---GDAVALRPEMTPSIA-RMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMD 165 (373)
T ss_dssp ---SSCEEECSSSHHHHH-HHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHH
T ss_pred ---CCEEEECCcCHHHHH-HHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHH
Confidence 22222221 12222 33222 235899999999999651 1235689999999986544 1 24
Q ss_pred HHHHHHHHHHH
Q 011364 282 DMACATAYLQY 292 (487)
Q Consensus 282 lm~~~e~li~~ 292 (487)
++.++.++++.
T Consensus 166 vi~l~~~~l~~ 176 (373)
T 3rac_A 166 VLRLLHEASAA 176 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555444443
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.72 E-value=4.1e-05 Score=79.97 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCC-------CCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~-------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-...+++.++++.+++.+.+.||.||.||.|.+... ++. .+.|.++..
T Consensus 182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~------------------------ 237 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG------------------------ 237 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC------------------------
Confidence 357788999999999999999999999999998643 111 133433210
Q ss_pred ccccccCcccccccchhhhH-HHHhc--------cCC-ceEEEecccccCCCC------CCcccccccceeeEEccCCHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYAT--------ALS-NVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLK 280 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~~--------g~~-kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~ 280 (487)
+.+.||.-..+..+ -++.. .+. |+|++++|||+|... +---.-||+|.|.+. |+.-+
T Consensus 238 ------~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe 310 (485)
T 3qne_A 238 ------EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPE 310 (485)
T ss_dssp ------TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGG
T ss_pred ------CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHH
Confidence 23445655555544 23222 122 699999999999641 111234999999986 67667
Q ss_pred HHHHHHHHHHHHH
Q 011364 281 DDMACATAYLQYV 293 (487)
Q Consensus 281 ~lm~~~e~li~~~ 293 (487)
+..+..++++...
T Consensus 311 ~s~~e~e~ml~~~ 323 (485)
T 3qne_A 311 KSWEEFDRMIGCS 323 (485)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666544
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=97.72 E-value=4.6e-05 Score=80.12 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CCC-----CCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
.-.+++..|.+.+|+.|.+.||.||.||+|.+... .|. .+.|.+ +..
T Consensus 47 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~-d~~------------------------ 101 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF-DIE------------------------ 101 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE-EET------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE-ecC------------------------
Confidence 35778889999999999999999999999998542 111 123322 110
Q ss_pred cccccCcccccccchhhhH-HHH-----hc----cC-CceEEEecccccCCCCCC-c---ccccccceeeEEccCCHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETY-----AT----AL-SNVYTFGPTFRAENSNTS-R---HLAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll-----~~----g~-~kvfeI~~~FR~E~~~t~-r---Hl~EFtmlE~e~~~~~~~~l 282 (487)
+++++|+.-.+... ++. .. .+ -|+|+|++|||+|.. +. + -.-||+|.|+|.- .+.++.
T Consensus 102 -----~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~-~~~~Gl~R~REF~Q~~~e~f-~~~~~~ 174 (471)
T 3a32_A 102 -----GHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPS-GSIYGLLRVRGFTQDDAHII-VPGGRV 174 (471)
T ss_dssp -----TEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEEE-EEGGGH
T ss_pred -----CcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCC-cccccceeEEEEEECCeEEE-cChHHH
Confidence 33444544433322 221 11 23 389999999999965 31 1 2359999999985 443333
Q ss_pred HHHHHHHH
Q 011364 283 MACATAYL 290 (487)
Q Consensus 283 m~~~e~li 290 (487)
.+...+++
T Consensus 175 ~de~~e~i 182 (471)
T 3a32_A 175 IDVVYDVF 182 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34333444
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.6e-05 Score=79.43 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC---CC------CCCCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~---eg------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.+..- +. ..+.|.+++...
T Consensus 51 lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~-------------------- 110 (518)
T 3ial_A 51 RPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGL-------------------- 110 (518)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETT--------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCC--------------------
Confidence 4567788899999999999999999999999987542 11 123454433210
Q ss_pred ccccccccCcccccccchhhhH-HHHhc------cCC-ceEEEecccccCCC--CCCcccccccceeeEEccCCHHHHHH
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMA 284 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l-~ll~~------g~~-kvfeI~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~lm~ 284 (487)
.+ .+.+++|+...+... .+... .+. |+||+++|||+|.. .+-.-.-||+|.|.+...++.++..+
T Consensus 111 ----~~-~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~ 185 (518)
T 3ial_A 111 ----QP-LEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVS 185 (518)
T ss_dssp ----EE-EEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHH
T ss_pred ----cc-cCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHH
Confidence 00 024456665555443 33322 122 79999999999943 12112359999999997789988888
Q ss_pred HHHHHHHHH
Q 011364 285 CATAYLQYV 293 (487)
Q Consensus 285 ~~e~li~~~ 293 (487)
.++.++...
T Consensus 186 e~~~~l~~~ 194 (518)
T 3ial_A 186 QLSDYWKVI 194 (518)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777443
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00019 Score=75.50 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-C--C-----CC-CCceeeecCCCcccccCCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AG-EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-e--g-----~~-~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (487)
.-...+++.+|.+.+++.+.+.||.||.||.|..... + | .. +.|.++..
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~---------------------- 272 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS---------------------- 272 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT----------------------
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC----------------------
Confidence 4456888889999999999999999999999998542 1 1 11 23322100
Q ss_pred ccccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCC-----CCCcccccccceeeEEccCCH-H
Q 011364 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS-----NTSRHLAEFWMIEPELAFADL-K 280 (487)
Q Consensus 215 ~~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~-----~t~rHl~EFtmlE~e~~~~~~-~ 280 (487)
-+.++||....+... .+...- + =|+|++++|||+|.. .+--=.-||+|.|.+.--.+. +
T Consensus 273 -------~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e 345 (501)
T 1wle_A 273 -------RFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLE 345 (501)
T ss_dssp -------TSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHH
T ss_pred -------CCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHH
Confidence 023456776666655 333221 2 289999999999954 111122489999998744343 6
Q ss_pred HHHHHHHHHHHHH
Q 011364 281 DDMACATAYLQYV 293 (487)
Q Consensus 281 ~lm~~~e~li~~~ 293 (487)
+..+..++++...
T Consensus 346 ~s~~~~e~~l~~~ 358 (501)
T 1wle_A 346 QSSELLEEFLSLQ 358 (501)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877777777554
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=97.67 E-value=5e-05 Score=79.29 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC--CCceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
-.-.+++..|.+.+++.+.+.||.||.||+|.+... ++.+ +-|. .+.
T Consensus 190 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~------------------------------~em 239 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFE------------------------------DVI 239 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHH------------------------------HTC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCCh------------------------------Hhh
Confidence 356778899999999999999999999999998542 1111 1111 001
Q ss_pred c---CcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCC------CCcccccccceeeEEccCCHHHHHH
Q 011364 222 F---EKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMA 284 (487)
Q Consensus 222 ~---~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~lm~ 284 (487)
| +.++||....+... .+.... + -|+|++++|||+|... +-.-.-||+|.|++ .|++-++..+
T Consensus 240 y~~~d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~ 318 (455)
T 2dq0_A 240 YKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWE 318 (455)
T ss_dssp CBBTTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHH
T ss_pred CeecCCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHH
Confidence 1 23556766666554 333221 2 2899999999999751 10123499999998 4666677777
Q ss_pred HHHHHHHHH
Q 011364 285 CATAYLQYV 293 (487)
Q Consensus 285 ~~e~li~~~ 293 (487)
..++++...
T Consensus 319 ~~~e~l~~~ 327 (455)
T 2dq0_A 319 WHEKIIRNA 327 (455)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666544
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00023 Score=74.44 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
+-.-.+++..|.+.+|+.|...||.||.||++.... ++...+.|.+.+.+
T Consensus 24 lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~------------------------ 79 (464)
T 4g84_A 24 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG------------------------ 79 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCS------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCC------------------------
Confidence 345678889999999999999999999999997642 11112234332211
Q ss_pred cccccCcccccccchhhh---HHHHhcc---CCceEEEecccccCCCCC-CcccccccceeeEEccC-C--H--HHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA-D--L--KDDMAC 285 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~---l~ll~~g---~~kvfeI~~~FR~E~~~t-~rHl~EFtmlE~e~~~~-~--~--~~lm~~ 285 (487)
|+.+.|+ |++= .|+++.. --|.|+|+++||.|.... .-+.-||+|+++|.-.. + . -++|.+
T Consensus 80 -----g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l 152 (464)
T 4g84_A 80 -----GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKI 152 (464)
T ss_dssp -----SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHH
T ss_pred -----CCEEEeC--CcCcHHHHHHHHhcCCCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHH
Confidence 2333332 2321 1433322 137899999999996421 23557999999998653 2 2 245555
Q ss_pred HHHHHHH
Q 011364 286 ATAYLQY 292 (487)
Q Consensus 286 ~e~li~~ 292 (487)
+-++++.
T Consensus 153 ~~~~l~~ 159 (464)
T 4g84_A 153 MCEILSS 159 (464)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00018 Score=76.20 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC----CCCC-----CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
-.-.+++..|.+.+|+.+.+.||.||.||+|.+..- .|.. +.|.+++...
T Consensus 58 P~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~--------------------- 116 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGK--------------------- 116 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETT---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCC---------------------
Confidence 356778899999999999999999999999987532 1111 2233322110
Q ss_pred cccccccCcccccccchhhhH-HHHhc------cC-CceEEEecccccCCCCCC--cccccccceeeEEccCCHHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMAC 285 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~------g~-~kvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~~~~lm~~ 285 (487)
.+ .+.+++|+.-.+... .+... .+ =|+|++++|||+|...+. .=.-||+|.|.+..|++.++..+.
T Consensus 117 ---~~-l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E 192 (519)
T 4hvc_A 117 ---TE-LAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEE 192 (519)
T ss_dssp ---EE-EEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHH
T ss_pred ---cc-cccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHH
Confidence 00 012345655444433 33322 12 279999999999943110 012499999999999998888877
Q ss_pred HHHHHHH
Q 011364 286 ATAYLQY 292 (487)
Q Consensus 286 ~e~li~~ 292 (487)
++.++..
T Consensus 193 ~~~~l~~ 199 (519)
T 4hvc_A 193 VLQILDL 199 (519)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0002 Score=76.15 Aligned_cols=117 Identities=19% Similarity=0.304 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.-.+++.++++.+++.+.+.||.||.||.|.+... ++.+ +.|.++
T Consensus 271 ~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~------------------------- 325 (536)
T 3err_A 271 KGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA------------------------- 325 (536)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET-------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec-------------------------
Confidence 3457888999999999999999999999999998543 1111 122210
Q ss_pred cccccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCCC------CCcccccccceeeEEccCC--H
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFAD--L 279 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~--~ 279 (487)
+.++||....+..+ .+...- + =|+|++++|||+|... +-.-.-||+|.|.+. |+. .
T Consensus 326 -------~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~ 397 (536)
T 3err_A 326 -------ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASL 397 (536)
T ss_dssp -------TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCH
T ss_pred -------CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCch
Confidence 23456766666654 232221 2 2799999999999631 112345999999985 554 3
Q ss_pred HHHHHHHHHHHHHH
Q 011364 280 KDDMACATAYLQYV 293 (487)
Q Consensus 280 ~~lm~~~e~li~~~ 293 (487)
++..+..++++...
T Consensus 398 e~s~~~~e~~~~~~ 411 (536)
T 3err_A 398 EASDRAFQELLENA 411 (536)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47777777776554
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00019 Score=75.60 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-C--C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-e--g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-...+++..|++.+++.+.+.||.||.||.|.+... . | ..+.|.++.... ...
T Consensus 198 p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~---------------~~~---- 258 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGS---------------EKS---- 258 (522)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCc---------------ccc----
Confidence 356788999999999999999999999999987532 1 1 123444321100 000
Q ss_pred ccccccCcccccccchhhhHH-HHhcc------C-CceEEEecccccCCCC------CCcccccccceeeEEccCCHHH-
Q 011364 217 WSQDFFEKPAFLTVSGQLNAE-TYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKD- 281 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l~-ll~~g------~-~kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~- 281 (487)
.+--+.++||....+..+- +...- + =|+|++++|||+|... +---.-||+|.|.+. |+.-++
T Consensus 259 --~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e 335 (522)
T 3vbb_A 259 --DDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDN 335 (522)
T ss_dssp -------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTT
T ss_pred --ccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChH
Confidence 0000234567666555542 22111 1 2799999999999741 101224999999985 554333
Q ss_pred -HHHHHHHHHHHH
Q 011364 282 -DMACATAYLQYV 293 (487)
Q Consensus 282 -lm~~~e~li~~~ 293 (487)
..+..++++...
T Consensus 336 ~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 336 KSWEMFEEMITTA 348 (522)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 555555555443
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00029 Score=74.87 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC------CCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
+-.-.++|..|.+.+|+.|...||.||.||++.... ++.....|.+.+.+
T Consensus 77 lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~------------------------ 132 (517)
T 4g85_A 77 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG------------------------ 132 (517)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTT------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCC------------------------
Confidence 455678899999999999999999999999997642 11111233332211
Q ss_pred cccccCcccccccchhhh---HHHHhcc---CCceEEEecccccCCCCC-CcccccccceeeEEccC-C--H--HHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA-D--L--KDDMAC 285 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~---l~ll~~g---~~kvfeI~~~FR~E~~~t-~rHl~EFtmlE~e~~~~-~--~--~~lm~~ 285 (487)
|+.+.|+ |++= .|+++.. --|.|+||+|||.|.... .=+.-||+|++++.-.. + . -+++.+
T Consensus 133 -----g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l 205 (517)
T 4g85_A 133 -----GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKI 205 (517)
T ss_dssp -----SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHH
T ss_pred -----CCEEEeC--CcCcHHHHHHHHhCCCCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHH
Confidence 2322332 2221 1433332 137899999999996421 12457999999998653 2 2 244554
Q ss_pred HHHHHH
Q 011364 286 ATAYLQ 291 (487)
Q Consensus 286 ~e~li~ 291 (487)
+-++++
T Consensus 206 ~~~~l~ 211 (517)
T 4g85_A 206 MCEILS 211 (517)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00017 Score=76.29 Aligned_cols=151 Identities=14% Similarity=0.103 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHH-hhhcCCeEEEeCCeeeccCCC---CC-----CCCceeeecCCCcccccCCCCCCCC-CCC-C
Q 011364 144 FGAVARVRNALAYATHK-FFQENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIP-KTK-D 212 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~-ff~~~gF~EV~TP~L~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~-~~~-~ 212 (487)
.-.-.+++..|.+.+++ ++.+.||.||.||+|.+...- |. .+.|.++....+..+....-.+... ... +
T Consensus 227 ~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~ 306 (522)
T 2cja_A 227 GPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVP 306 (522)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccc
Confidence 34567788899999996 689999999999999985320 11 1223222100000000000000000 000 0
Q ss_pred CCccccccccCcccccccchhhhH-HHHh------ccCC-ceEE-EecccccCCC--CCCcccccccceeeEEccCCHHH
Q 011364 213 GLIDWSQDFFEKPAFLTVSGQLNA-ETYA------TALS-NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKD 281 (487)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~Spql~l-~ll~------~g~~-kvfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~ 281 (487)
+ .++...--+.+++|+...+... .+.. ..+. |+|| +++|||+|.. ++---.-||+|.|++. |++-++
T Consensus 307 ~-~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~ 384 (522)
T 2cja_A 307 T-KLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEE 384 (522)
T ss_dssp H-HHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHH
T ss_pred c-cccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHH
Confidence 0 0000000023445655444332 2221 1122 7999 9999999933 1112345999999998 788888
Q ss_pred HHHHHHHHHHHHHHH
Q 011364 282 DMACATAYLQYVVRY 296 (487)
Q Consensus 282 lm~~~e~li~~~~~~ 296 (487)
..+..++++......
T Consensus 385 s~ee~ee~i~~~~~~ 399 (522)
T 2cja_A 385 VLKCAEELHDRYMHI 399 (522)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888343333
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00038 Score=73.71 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhh--cCCeEEEeCCeeeccC
Q 011364 146 AVARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~--~~gF~EV~TP~L~~~~ 179 (487)
.-.+++..|.+.+|+.|. +.||.||.||+|.+..
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 467788999999999999 9999999999999865
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00081 Score=66.90 Aligned_cols=143 Identities=19% Similarity=0.170 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC-------CCceeeecCCCc-ccccCCCCCCCCCCCCCCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSS-REAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~-------~~F~vt~~~~~~-~~~~~~~~~~~~~~~~~~~ 215 (487)
...-+++..|.+.+++ ..+.||.||.||.|..... ++.+ ..|.++...... .+.. .++.+ ..+ .
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~--ll~~~---~~~-~ 133 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINA--AVSRF---DAG-G 133 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHH--HHHHH---HTT-S
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhh--hhhhh---ccc-c
Confidence 4566777889999999 9999999999999998543 2222 233322110000 0000 00000 000 0
Q ss_pred cccccccCcccccccchhhhH-HHHhc-c-C----CceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT-A-L----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~-g-~----~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~ 288 (487)
+++...-+.+.||....+..+ .+... + + -|+-.+++|||+|.+.+-..+-+|+|.|+.. |++-+++.+..|+
T Consensus 134 ~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~ 212 (346)
T 3mf2_A 134 DWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRER 212 (346)
T ss_dssp CGGGGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHH
T ss_pred ccccccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHH
Confidence 011111123456777777766 44442 2 2 3566799999999876666777999999865 6789999999988
Q ss_pred HHHHHHH
Q 011364 289 YLQYVVR 295 (487)
Q Consensus 289 li~~~~~ 295 (487)
++..+-.
T Consensus 213 l~~~ae~ 219 (346)
T 3mf2_A 213 WMVRAQA 219 (346)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.019 Score=50.91 Aligned_cols=79 Identities=15% Similarity=0.288 Sum_probs=61.7
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc-chHh-HhccCCCCCcEEEEEeeEeecCCCCceEEEEEe
Q 011364 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (487)
Q Consensus 30 ~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~-~~~~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~ 107 (487)
+.|+|.|.|.+++...+...+.|.|+||. .|.|++..+.. .-.. ... +..|++|.|.|.+..-.. +.+|.++
T Consensus 48 ~~V~IvGiVv~~~~~~~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~--l~~G~~VrV~G~v~~fr~---~rqI~~~ 121 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYEGKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAIS--MSPGNVVCVFGKINSFRS---EVELIAQ 121 (159)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTT--CCTTCEEEEEEEEECSSS---SCEEEEE
T ss_pred EEEEEEEEEEEEEEeCCEEEEEEecCCCC-eEEEEEEccCCCCccccccc--CCCCCEEEEEEEEEeeCC---EEEEEEE
Confidence 67999999999998877788899999983 69999886541 1111 124 899999999999976432 5789999
Q ss_pred EEEEEcc
Q 011364 108 KIVLVGK 114 (487)
Q Consensus 108 ~i~vls~ 114 (487)
++.++..
T Consensus 122 ~i~~v~d 128 (159)
T 3kf6_A 122 SFEELRD 128 (159)
T ss_dssp EEEEECS
T ss_pred EEEECCC
Confidence 9988774
|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
Probab=96.65 E-value=0.018 Score=49.45 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=65.0
Q ss_pred cceeeccccCCCC--C---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch-HhHhccCCCCC
Q 011364 10 KKLKIVDVKGGPN--E---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTG 83 (487)
Q Consensus 10 ~~~~i~~i~~~~~--~---~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~-~~~~~~~L~~g 83 (487)
+-++|++|++... + -....=..|++.|+|.++.....-.-+.|.|++| ..|.|........- ..... +..|
T Consensus 7 ~PvtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~--~~~g 83 (132)
T 3kdf_D 7 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPE 83 (132)
T ss_dssp EECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEEC---------CC--CCTT
T ss_pred eeEEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCC-CEEEEEEEccCCCccccccc--ccCC
Confidence 3467778776431 1 0011125699999999999887666678999997 14999887653211 11334 9999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEcc
Q 011364 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 84 d~V~V~G~~~~~~~~~~~~el~~~~i~vls~ 114 (487)
++|.|.|.+..-++ ...|.+..+..+..
T Consensus 84 ~yVrV~G~l~~f~g---~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 84 TYVKVAGHLRSFQN---KKSLVAFKIMPLED 111 (132)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEECSS
T ss_pred CEEEEEEEEEeECC---EEEEEEEEEEEcCC
Confidence 99999999987542 46778777775543
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0051 Score=63.85 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=30.3
Q ss_pred ceEEEecccccCC--CCCCccc----ccccceeeEEccCCHHHHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAEN--SNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQYV 293 (487)
Q Consensus 245 kvfeI~~~FR~E~--~~t~rHl----~EFtmlE~e~~~~~~~~lm~~~e~li~~~ 293 (487)
++.|||+|||+|. + +.+|- -||||.|.+. |++-++..+..+.++..+
T Consensus 175 ~iaqig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 175 GLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp EEEEEEEEECCC-----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred EEEEEeeeeecccccc-cCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 6899999999994 3 33332 5999999984 666655555555555444
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.005 Score=59.85 Aligned_cols=103 Identities=9% Similarity=0.014 Sum_probs=59.8
Q ss_pred HHHHHH--HhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccc--
Q 011364 154 LAYATH--KFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT-- 229 (487)
Q Consensus 154 i~~~iR--~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-- 229 (487)
+.+.+| +.|...||.||.||++.....-.. +.| ++.. |+.+.|+
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f--~d~~-----------------------------g~~l~LRpd 53 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF--LDRK-----------------------------GNLFSIRED 53 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE--EETT-----------------------------SCEEEECCC
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc--CCCC-----------------------------CCEEEeCCc
Confidence 344455 999999999999999998654211 222 1111 1111111
Q ss_pred cchhhhH-HHHhcc--CCceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHHHHHHHHHHHH
Q 011364 230 VSGQLNA-ETYATA--LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQY 292 (487)
Q Consensus 230 ~Spql~l-~ll~~g--~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~lm~~~e~li~~ 292 (487)
..|.+.. ++.-.. --|.|++|+|||.|... . -||||++++.-..+ . -+++.++-++++.
T Consensus 54 ~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e~~~-~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~ 119 (275)
T 1usy_A 54 FTKTVLNHRKRYSPDSQIKVWYADFVYRYSGSD-L---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp HHHHHHHHHTTCTTCCCEEEECCEEEEEEETTE-E---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcCCCCceEEEEeceEEecCCCC-C---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHH
Confidence 1122222 121111 24899999999999763 3 79999999986654 2 2444444444443
|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.022 Score=46.95 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=66.5
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeec-------CC---CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccC
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGL 79 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~-------~g---~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~ 79 (487)
..++|+||.. +..|.|.|+|.++-. .| ++.=+.|.|.+| ++.+++..+.... .
T Consensus 4 ~~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~~----~-- 66 (105)
T 3dm3_A 4 DTYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTDI----D-- 66 (105)
T ss_dssp CEECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGGS----C--
T ss_pred cceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECccccc----c--
Confidence 4467777754 267999999988742 22 355578899986 5999887654321 4
Q ss_pred CCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCC
Q 011364 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP 117 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~ 117 (487)
+.+||+|.+.|.++.... +++||++.+...+.+|..
T Consensus 67 l~~Gdvv~i~g~vk~~~~--g~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 67 VGRGDYVRVRGYIREGYY--GGLECTANYVEILKKGEK 102 (105)
T ss_dssp CCTTCEEEEEEEEEECTT--SSEEEEEEEEEEEECCC-
T ss_pred cCCCCEEEEEEEEEEccC--CCEEEEeCCceEEEeccc
Confidence 999999999999988653 369999999999999863
|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.021 Score=49.29 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=65.8
Q ss_pred ccceeeccccCCCCC-------CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch--HhHhccC
Q 011364 9 RKKLKIVDVKGGPNE-------GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~-------~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~--~~~~~~~ 79 (487)
.+-++|++|++.... -....=..|++.|+|.+++......-+.|.|++| .|.+......... .....
T Consensus 9 l~PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG--~I~~~~W~~~~~~~~~~~~~-- 84 (136)
T 4gop_B 9 LRPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTG--QIEVRQWLDSSSDDSSKASE-- 84 (136)
T ss_dssp EEECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSC--EEEEEEECC--------CCS--
T ss_pred EEeEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCC--CEEEEEecccCCcccccccc--
Confidence 345778888764210 0012225799999999999887666678999997 4999887643221 12334
Q ss_pred CCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEc
Q 011364 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVG 113 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls 113 (487)
+..|++|.|.|.+..-+. ...|.+..+..+.
T Consensus 85 ~~~g~yVrV~G~v~~f~g---~~qi~~~~ir~v~ 115 (136)
T 4gop_B 85 IRNNVYVRVLGTLKSFQN---RRSISSGHMRPVI 115 (136)
T ss_dssp CCTTCEEEEEEEEEEETT---EEEEEESEEEECS
T ss_pred cCCCCEEEEEEEEEEeCC---EEEEEEEEEEECC
Confidence 999999999999976532 4677877776543
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0053 Score=64.00 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHh-h-hcCCeEEEeCCeeeccCCCCC---CCCceeeecCCCcccccCCCCCCCCCCCCCCc-cccc
Q 011364 146 AVARVRNALAYATHKF-F-QENGFIWISSPIITASDCEGA---GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI-DWSQ 219 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~f-f-~~~gF~EV~TP~L~~~~~eg~---~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 219 (487)
.=.+++..|.+.+++. + .+.|+.||.||+|.+..--.+ +..|...+... .. -++..+ +.+. ..-.
T Consensus 60 ~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e-----~~-~~~g~~---~eem~~~~~ 130 (454)
T 1g5h_A 60 LGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIRE-----IL-QDREPS---KEQLVAFLE 130 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHH-----HH-CC---C---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHH-----Hh-hccCCC---HHHHHHHHH
Confidence 4577889999988877 4 589999999999998652111 11000000000 00 000000 0000 0000
Q ss_pred cccCccccccc--chhhh---HHHHhc---cCC-ceEEEecccc---cCCCCCCcc----cccccceeeEEccCCHHHHH
Q 011364 220 DFFEKPAFLTV--SGQLN---AETYAT---ALS-NVYTFGPTFR---AENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (487)
Q Consensus 220 ~~~~~~~~L~~--Spql~---l~ll~~---g~~-kvfeI~~~FR---~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (487)
++++.+.||+. +|-.+ +..+-. -+. +++|||+||| ||-+ + +| .-||||.|++. |++.++..
T Consensus 131 ~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s-~-~~Gl~R~REF~q~E~~~-F~~pe~~~ 207 (454)
T 1g5h_A 131 NLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ-T-PSSVTRVGEKTEASLVW-FTPTRTSS 207 (454)
T ss_dssp HHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHH
T ss_pred hhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc-C-CCCccccCceehhheEE-EeCHhhHH
Confidence 12344556664 33232 222211 233 7999999999 6853 2 43 46999999986 78888777
Q ss_pred HHHHHHHHHHHHH
Q 011364 284 ACATAYLQYVVRY 296 (487)
Q Consensus 284 ~~~e~li~~~~~~ 296 (487)
+..+.++.....-
T Consensus 208 e~~~~~~~~~~~~ 220 (454)
T 1g5h_A 208 QWLDFWLRHRLLW 220 (454)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666554433
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0061 Score=66.76 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHhhh-cCCeEEEeCCeeecc
Q 011364 144 FGAVARVRNALAYATHKFFQ-ENGFIWISSPIITAS 178 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~-~~gF~EV~TP~L~~~ 178 (487)
.-.-.+++..|.+.+|+.|. ..||.||.||+|++.
T Consensus 97 lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 97 GPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 34567889999999999998 669999999999984
|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.05 Score=44.01 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=60.9
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeee---c----CC---CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR---A----QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR---~----~g---~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~ 81 (487)
.+|+||.+ +..|.+.|+|.++- . .| ++.=+.|.|.+| +|.+++..+... . . ++
T Consensus 3 ~kI~dl~~---------g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~---~-~--i~ 65 (97)
T 3e0e_A 3 YKISELMP---------NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELAD---F-E--VK 65 (97)
T ss_dssp ECGGGCCT---------TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGG---C-C--CC
T ss_pred eEHHHCCC---------CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCccc---c-c--cC
Confidence 45777754 36799999998874 2 22 355577899996 589988765322 1 4 99
Q ss_pred CCcEEEEEeeEeecCCCCceEEEEEeEEEEEccC
Q 011364 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 82 ~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~ 115 (487)
+||+|.|.|.+.... +.+||.+.+...+.+|
T Consensus 66 ~Gdvv~i~g~v~~~~---~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 66 KGDIAEVSGYVKQGY---SGLEISVDNIGIIEKS 96 (97)
T ss_dssp TTCEEEEEEEEEEC-----CEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEcC---CeEEEEECCCcEEEEC
Confidence 999999999987654 3699999998888776
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.029 Score=62.39 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCce------eeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFC------VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~------vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
..++.+.+|+.|...||.|+.|..+++..-- +.|. +.-.|| ++ .++
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~---~~l~~~~~~~v~L~NP------------is----------~e~--- 546 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHA---KDFALQERPTISLLMP------------MS----------EAH--- 546 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTT---TTTCSSCCCCEECSSC------------SC----------TTS---
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHH---HhhCCCCCceEEEcCC------------Cc----------hhh---
Confidence 4567888999999999999999999876421 1121 111111 11 111
Q ss_pred ccccccchhhhH-HHHhc----cCC--ceEEEecccccCCCCCCcccccccceeeEEcc-------------CCHHHHHH
Q 011364 225 PAFLTVSGQLNA-ETYAT----ALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMA 284 (487)
Q Consensus 225 ~~~L~~Spql~l-~ll~~----g~~--kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~-------------~~~~~lm~ 284 (487)
..|++|-=--+ +.+.. +.. |+||||+|||.++. ...| +||+||..-.+. .|+.++..
T Consensus 547 -svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg 623 (795)
T 2rhq_B 547 -ATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKG 623 (795)
T ss_dssp -SEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHH
T ss_pred -hhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHH
Confidence 13555433333 44332 233 89999999997543 2357 999999976654 58999999
Q ss_pred HHHHHHHHH
Q 011364 285 CATAYLQYV 293 (487)
Q Consensus 285 ~~e~li~~~ 293 (487)
.+|.++..+
T Consensus 624 ~le~ll~~l 632 (795)
T 2rhq_B 624 VVDRVAEKL 632 (795)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998876
|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.038 Score=46.01 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=57.6
Q ss_pred CCCEEEEEEEEeee---e----cC---CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeec-C
Q 011364 28 VGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS-Q 96 (487)
Q Consensus 28 ~~~~V~v~GwV~~i---R----~~---g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~-~ 96 (487)
.|+.|.+.|.|.++ | +. +++..+.|.|++| .|.+.+...... .... +..|++|.|+|.+... -
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~~--~~~~--l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENIK--LLKK--FREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGGG--GGGT--CCTTSEEEEEEEEECCCS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchhh--hhhc--CCCCCEEEEEeeEEcccc
Confidence 35788999999998 2 22 3688899999996 599988865422 2235 9999999999998654 2
Q ss_pred CCCceEEEEEeEEEEEccC
Q 011364 97 GSKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 97 ~~~~~~el~~~~i~vls~~ 115 (487)
. +.++|.+.+...+.++
T Consensus 89 ~--g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 89 G--GRKEAHLMPRSTVEVL 105 (115)
T ss_dssp S--SSCEEEECTTCCEEEE
T ss_pred C--CeEEEEECCCceEEEC
Confidence 2 3577877665544444
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.041 Score=59.19 Aligned_cols=112 Identities=10% Similarity=0.049 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCC--C------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccC
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~--e------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (487)
.++.+.+|+.|...||.||-|+.+++..- . +..+.+.+ .|| ++ .++
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L--~NP------------is----------~e~-- 447 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI--SNP------------KT----------AEF-- 447 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB--SSC------------SS----------GGG--
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE--cCC------------Cc----------hhH--
Confidence 45678899999999999999999987420 0 00111111 111 11 111
Q ss_pred cccccccchhhhH-HHHhccC-----CceEEEecccccCCCCCCcccccccceeeEEccC--CHHHHHHHHHHHHHH
Q 011364 224 KPAFLTVSGQLNA-ETYATAL-----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 292 (487)
Q Consensus 224 ~~~~L~~Spql~l-~ll~~g~-----~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (487)
..|++|-=--+ +.+.... =|+||+|+|||.++. ..+|.+|+.++..-++.. ++.++...++.++..
T Consensus 448 --svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 448 --QVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp --SEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 13555533333 4443221 279999999998765 467889999999776653 577777666665554
|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.052 Score=44.90 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=59.6
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEee
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (487)
++++++..- ..+..|++.|.|.+.-..- . ..++|++| .|+|-++... | ....+++++-|.+.|.
T Consensus 26 ~TV~~a~~~------~Dd~~V~L~G~Iv~~~~~d--~-Y~F~D~TG--~I~VeId~~~--w---~g~~v~p~~~Vri~Ge 89 (109)
T 1nnx_A 26 TTVESAKSL------RDDTWVTLRGNIVERISDD--L-YVFKDASG--TINVDIDHKR--W---NGVTVTPKDTVEIQGE 89 (109)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETT--E-EEEEETTE--EEEEECCGGG--S---TTCCCCTTSCEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEeCCC--e-EEEECCCc--cEEEEEChhh--c---CCcccCCCCEEEEEEE
Confidence 567777653 5678999999998764332 2 45899996 4888776532 2 2113899999999999
Q ss_pred EeecCCCCceEEEEEeEEEEEcc
Q 011364 92 VVPSQGSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 92 ~~~~~~~~~~~el~~~~i~vls~ 114 (487)
+-+.-. ..||.|..|++|.+
T Consensus 90 vDkd~~---~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 90 VDKDWN---SVEIDVKQIRKVNP 109 (109)
T ss_dssp EEEETT---EEEEEEEEEEEC--
T ss_pred ECCCCC---ceEEEEEEEEEccC
Confidence 997542 46899999998753
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.047 Score=50.82 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCce-------eeecCCCcccccCCCCCCCCCCCCCCccccccccCc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFC-------VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~-------vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (487)
.++.+.+|+.|...||.||-|-.+++... .+.|. +.-.|| ++ .+
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~---~~~~~~~~~~~~v~l~NP------------ls----------~e---- 57 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAY---YDGLESYPSKNLVMLLNP------------LS----------AD---- 57 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGG---GTTCSSSCGGGCEEBSSG------------GG----------CS----
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHH---HHhhcccCcCCeEEEeCC------------cc----------hh----
Confidence 45788999999999999999999998532 11110 111111 11 01
Q ss_pred ccccccchhhhH-HHHhc----cCC--ceEEEecccccCCCCCC-----cccccccceeeEEcc-------------CCH
Q 011364 225 PAFLTVSGQLNA-ETYAT----ALS--NVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAF-------------ADL 279 (487)
Q Consensus 225 ~~~L~~Spql~l-~ll~~----g~~--kvfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~~~-------------~~~ 279 (487)
--.|++|-=--+ +.++. +.. |+||||+||+.++.+.. .+..|..+|-+-+++ .|+
T Consensus 58 ~~vmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df 137 (213)
T 3ig2_A 58 LNCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSV 137 (213)
T ss_dssp CCEECSCSHHHHHHHHHHC------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCH
Confidence 114666543333 54443 333 79999999998653211 234578888876655 357
Q ss_pred HHHHHHHHHHHHHH
Q 011364 280 KDDMACATAYLQYV 293 (487)
Q Consensus 280 ~~lm~~~e~li~~~ 293 (487)
.++...+|.++..+
T Consensus 138 ~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 138 YELKAYVENIFKRL 151 (213)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777654
|
| >3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.21 Score=50.57 Aligned_cols=77 Identities=13% Similarity=0.257 Sum_probs=60.5
Q ss_pred CCCEEEEEEEEeee-ec-CCCeEEEEEEcCCCCeeeEEEEeCCccchHh-HhccCCCCCcEEEEEeeEeecCCCCceEEE
Q 011364 28 VGLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (487)
Q Consensus 28 ~~~~V~v~GwV~~i-R~-~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~~~~~~~~~~~~el 104 (487)
....++|.|.|.+. +. .|.-.|+.|.|++ ..|.|++-.....|.. ++. |.+||.|.|.|.+.. + .|
T Consensus 283 ~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~--~~i~c~ayeptk~fr~~vr~--L~~GD~V~v~G~v~~-----g--tL 351 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYDIEGGHVFFEIDTKF--GSVKCAAFEPTKQFRNVIRL--LRKGDVVEVYGSMKK-----D--TI 351 (402)
T ss_dssp TTCEEEEEEEEEEEEEEETTTEEEEEEEETT--EEEEEEECGGGTTHHHHHTT--CCTTCEEEEEEEEET-----T--EE
T ss_pred cCceEEEEEEEecCcEeccCceEEEEEEcCC--CEEEEEEEccchHHHHHHhc--CCCCCEEEEEEeecC-----C--EE
Confidence 34789999999998 54 5778889999986 4699988653334544 456 999999999999765 1 78
Q ss_pred EEeEEEEEccC
Q 011364 105 KVNKIVLVGKS 115 (487)
Q Consensus 105 ~~~~i~vls~~ 115 (487)
.++++++++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999998775
|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.2 Score=48.23 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=65.8
Q ss_pred cceeeccccCCCCC-C-C---CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccch-HhHhccCCCCC
Q 011364 10 KKLKIVDVKGGPNE-G-L---DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTG 83 (487)
Q Consensus 10 ~~~~i~~i~~~~~~-~-~---~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~-~~~~~~~L~~g 83 (487)
+.++|++|++.... + - ...=..|++.|+|.++...+...-+.|.|++| ..|.+.+......- ..... +..|
T Consensus 47 ~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~~~~~~~L~D~TG-~~I~~k~W~~~~~~~~~~~~--~~~G 123 (270)
T 2pi2_A 47 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPE 123 (270)
T ss_dssp EECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTT
T ss_pred EEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEeccceEEEEEECCCC-CEEEEEEEcCcCcccchhhc--CCCC
Confidence 55788888875210 0 0 01114699999999998877666678999997 14888887543210 01234 9999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEcc
Q 011364 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (487)
Q Consensus 84 d~V~V~G~~~~~~~~~~~~el~~~~i~vls~ 114 (487)
++|.|.|.+..-+. ...|.+..|..+..
T Consensus 124 ~yVrV~G~v~~f~g---~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 124 TYVKVAGHLRSFQN---KKSLVAFKIMPLED 151 (270)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEECSC
T ss_pred CEEEEEEEEEecCC---eeEEEEEEEEecCC
Confidence 99999999986542 46777777775544
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.09 Score=48.83 Aligned_cols=120 Identities=15% Similarity=0.070 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~S 231 (487)
.++.+.+|+.|...||.||-|-.+++... .+.|..... .++-...++++ .+ -..|++|
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~---~~~~~~~~~-----~~~v~l~NPls----------~e----~~vmRts 64 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSY---YEGLKSHPR-----EMAVELMNPLS----------QE----LNCMRQT 64 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGG---GTTCSSSCG-----GGCCBCSSBSC----------SS----EEEECSS
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHH---HhhhcccCc-----CCeEEecCCcc----------HH----HHHHHHH
Confidence 46788999999999999999999998532 111100000 00000001111 11 1246665
Q ss_pred hhhhH-HHHh----ccCC--ceEEEecccccCCCCC-----CcccccccceeeEEcc-------------CCHHHHHHHH
Q 011364 232 GQLNA-ETYA----TALS--NVYTFGPTFRAENSNT-----SRHLAEFWMIEPELAF-------------ADLKDDMACA 286 (487)
Q Consensus 232 pql~l-~ll~----~g~~--kvfeI~~~FR~E~~~t-----~rHl~EFtmlE~e~~~-------------~~~~~lm~~~ 286 (487)
-=--+ +.++ .+.. |+||||+||+.++... ..+..|..+|-..+++ .|+.++...+
T Consensus 65 LlpgLL~~~~~N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~v 144 (213)
T 3ica_A 65 LLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVV 144 (213)
T ss_dssp SHHHHHHHHHHHHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHH
Confidence 43333 4433 3444 7999999999764210 1345688888776654 4788888888
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
|.++..+
T Consensus 145 e~ll~~l 151 (213)
T 3ica_A 145 EQVLCRV 151 (213)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8887665
|
| >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.34 Score=44.91 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=58.5
Q ss_pred CCEEEEEEEEeeeecCC--------CeEEEEEEcCCCCe-eeEEEEeCCccchHh----HhccCCCCCcEEEEEeeEeec
Q 011364 29 GLMIVVAGWVRTLRAQS--------SVTFIEVNDGSCLS-NMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVPS 95 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~~g--------~i~Fi~lrD~~~~~-~lQvv~~~~~~~~~~----~~~~~L~~gd~V~V~G~~~~~ 95 (487)
=+.|.|.|.|..++-.- ...|+.|-|+||.. .|.|.++... +.. +.. ...|.+|.|+|++..-
T Consensus 85 I~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~--~~~~gl~l~~--~~~G~iV~VkG~i~~~ 160 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ--FKEVGLTLDK--KNYGKIVELEGEIYNW 160 (220)
T ss_dssp ECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH--HHTTTCCTTS--CCTTCEEEEEEEEEEC
T ss_pred cEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH--hhccCccccc--cCCCeEEEEEEEEEee
Confidence 36799999999997542 45899999999852 4666665321 111 112 4589999999999875
Q ss_pred CC-----CCceEEEEEeEEEEEccC
Q 011364 96 QG-----SKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 96 ~~-----~~~~~el~~~~i~vls~~ 115 (487)
.. +.-.-||.++++.+++..
T Consensus 161 r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 161 YDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccccccceEEEEEEEEEeccC
Confidence 32 111469999999999875
|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
Probab=92.75 E-value=1 Score=37.01 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=56.5
Q ss_pred CCEEEEEEEEeeeec--C-CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE-eeEeecCCCCceEEE
Q 011364 29 GLMIVVAGWVRTLRA--Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVEL 104 (487)
Q Consensus 29 ~~~V~v~GwV~~iR~--~-g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~-G~~~~~~~~~~~~el 104 (487)
++.|.+.|+|.++-. . +....+.|.|.||. |-+++.... .+.. +..|++|.|. |.+..-+ +.++|
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~--I~~t~W~~~----~~~~--~~~G~~V~i~n~~v~~~~---G~~~L 83 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGI--IKFTIWKNA----ELPL--LEQGESYLLRSVVVGEYN---DRFQV 83 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCC--EEEEEEGGG----CCCC--CCTTCEEEEEEEEEEEET---TEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCe--EEEEEECcc----cccc--cCCCCEEEEEEEEEEEEC---CEEEE
Confidence 577999999998854 2 23445788999974 888888632 1234 9999999999 6666543 36899
Q ss_pred EEeEEEEEccCCCC
Q 011364 105 KVNKIVLVGKSDPS 118 (487)
Q Consensus 105 ~~~~i~vls~~~~~ 118 (487)
.+.+...+.+....
T Consensus 84 ~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 84 QVNKNSSIEKLSEP 97 (109)
T ss_dssp EECSSSEEEECSSC
T ss_pred EECCceEEEECCCc
Confidence 98877666665433
|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
Probab=92.43 E-value=0.71 Score=38.48 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=53.0
Q ss_pred CEEEEEEEEeee---e----cCC--CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEE-eeEeecCCCC
Q 011364 30 LMIVVAGWVRTL---R----AQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSK 99 (487)
Q Consensus 30 ~~V~v~GwV~~i---R----~~g--~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~-G~~~~~~~~~ 99 (487)
..|.+.|.|.++ | +.| .+.=+.|.|.|| +|.+.+..... .. +..|++|.|. |.+..-+
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG--~I~~tlW~~~~-----~~--~~~G~vv~i~~g~v~~~~--- 80 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--RVKLTLWGKHA-----GS--IKEGQVVKIENAWTTAFK--- 80 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--EEEEEEEGGGT-----TC--CCTTCEEEEEEEEEEEET---
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCC--EEEEEEECChh-----hc--CCCCCEEEEEeEEEEEeC---
Confidence 358899999887 4 234 355667789997 48888876432 24 8999999999 8776543
Q ss_pred ceEEEEEeEEEEEccCC
Q 011364 100 QKVELKVNKIVLVGKSD 116 (487)
Q Consensus 100 ~~~el~~~~i~vls~~~ 116 (487)
+.++|.+.+...+.++.
T Consensus 81 g~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 81 GQVQLNAGSKTKIAEAS 97 (119)
T ss_dssp TEEEEEECTTCEEEECC
T ss_pred CEEEEEECCCEEEEEcC
Confidence 35889888755555543
|
| >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.11 E-value=1.5 Score=35.82 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=60.6
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeee-----cCCC---eEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQSS---VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR-----~~g~---i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~g 83 (487)
.+|+||... ...|.+.|.|.++- +.|+ +.=+.|.|.|| +|.+.+... . +.+|
T Consensus 4 ~kI~dl~pg--------~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG--~I~~tlW~~--------~--l~~G 63 (106)
T 2k75_A 4 VKIRDVSLS--------TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA--RIRISSFGK--------Q--LQDS 63 (106)
T ss_dssp CCSTTCCTT--------CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC--EEEEEEESS--------C--CCTT
T ss_pred EEHHHcCCC--------CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC--eEEEEEEcC--------c--cCCC
Confidence 356777543 24578888887652 2453 66677889997 488888764 2 8999
Q ss_pred cEEEEE-eeEeecCCCCceEEEEEeEEEEEccCCCCCCCC
Q 011364 84 ASIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (487)
Q Consensus 84 d~V~V~-G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~~ 122 (487)
|+|.+. |.+..-+ +.++|.+.+...+.+.....|+.
T Consensus 64 dvv~i~ng~v~~~~---g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 64 DVVRIDNARVAQFN---GYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEEEEEEEET---TEEEEEECTTSEEEECCSCCCCS
T ss_pred CEEEEEeeEEeEEC---CEEEEEECCcEEEEECCCCCccc
Confidence 999999 7775542 36899998776666665445654
|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.34 Score=40.24 Aligned_cols=92 Identities=9% Similarity=0.125 Sum_probs=63.4
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCC
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLI 80 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L 80 (487)
-+.|++|... ....+|+|||.++ |. .|++.=++|.|.+| .|++++..+..+ | ... |
T Consensus 4 ~~~Is~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f--~~~--l 69 (114)
T 1ynx_A 4 IFAIEQLSPY--------QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFATKF--NEI--L 69 (114)
T ss_dssp BCCGGGCCTT--------TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHHHHH--HHH--S
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHHHHH--Hhh--c
Confidence 4567788654 1347899999865 21 35777788999997 699999765322 2 124 9
Q ss_pred CCCcEEEEEeeEeec-CCC----CceEEEEEeEEEEEccCC
Q 011364 81 TTGASIWIQGNVVPS-QGS----KQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 81 ~~gd~V~V~G~~~~~-~~~----~~~~el~~~~i~vls~~~ 116 (487)
..|+++.+.+--++. ... ...+||....-+.+.+|.
T Consensus 70 ~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 70 QEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp CSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred ccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 999999999954433 211 347899888777777774
|
| >3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A | Back alignment and structure |
|---|
Probab=90.92 E-value=0.83 Score=38.38 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=48.6
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
..|+.|++-|+|.+++..|+..- |.++.+ +.++|.++.... .. + +.+|.|.|++.. ...|.+
T Consensus 20 fvgk~VrivGkV~~~~~~g~~~~--l~s~Dg-~~Vtv~l~~p~~-----~~--l--~~~vEViG~V~~------~~tI~~ 81 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGKMFI--LSDGEG-KNGTIELMEPLD-----EE--I--SGIVEVVGRVTA------KATILC 81 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSSEEE--EECTTS-CEEEEECSSCCS-----SC--C--CSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEEE--EEeCCC-CEEEEEeCCCCC-----cc--c--CcEEEEEEEECC------CCeEEE
Confidence 68999999999999998776443 443333 357777765211 01 3 559999999974 245777
Q ss_pred eEEEEEccC
Q 011364 107 NKIVLVGKS 115 (487)
Q Consensus 107 ~~i~vls~~ 115 (487)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 777766654
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.97 Score=50.09 Aligned_cols=107 Identities=12% Similarity=0.018 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C-CCCCceeeecCCCcccccCCCCCCCCCCCCCCccccccccCcc
Q 011364 150 VRNALAYATHKFFQENGFIWISSPIITASDCE---G-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (487)
Q Consensus 150 ~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (487)
-..++.+.+|+.|...||.|+-|-.+++..-- + ..+.+.+ .|| ++ .++
T Consensus 490 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L--~NP------------is----------~d~---- 541 (785)
T 1b7y_B 490 APYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLL--LNP------------LA----------PEK---- 541 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEE--SSC------------SS----------TTS----
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEE--cCC------------Cc----------hhh----
Confidence 35668889999999999999998888875310 0 1122222 111 11 111
Q ss_pred cccccchhhhH-HHHhc----c-CC--ceEEEecccccCCCCCCcccccccceeeEEcc------------CCHHHHHHH
Q 011364 226 AFLTVSGQLNA-ETYAT----A-LS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDDMAC 285 (487)
Q Consensus 226 ~~L~~Spql~l-~ll~~----g-~~--kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~------------~~~~~lm~~ 285 (487)
..|++|-=--+ +.+.. + .. |+||||+||| + +|+.||..-++. .|+.++...
T Consensus 542 svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~ 612 (785)
T 1b7y_B 542 AALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGY 612 (785)
T ss_dssp SEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHH
Confidence 13555433333 43332 3 33 7999999999 2 789999977665 479999999
Q ss_pred HHHHHHHH
Q 011364 286 ATAYLQYV 293 (487)
Q Consensus 286 ~e~li~~~ 293 (487)
+|.++..+
T Consensus 613 le~ll~~l 620 (785)
T 1b7y_B 613 LEALFARL 620 (785)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999876
|
| >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A | Back alignment and structure |
|---|
Probab=90.37 E-value=0.68 Score=38.55 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=40.8
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCCC
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p~ 121 (487)
++||+...... .++. |+.|+-|.|+|.+.........++|+++.|+.|+.....-|+
T Consensus 49 i~vv~~Gk~AE--~~~~--l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLAL--LLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEETHHHH--HHTT--CCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEhHHHH--hhhc--cCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCCc
Confidence 78888765332 2345 999999999999997533335799999999999876544454
|
| >4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=88.93 E-value=1.1 Score=37.12 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=43.9
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
..|+.|++-|+|.+.+. + . +.|....+ +.++|.++... . +..+.+|.|.|++.....+-|...|.+
T Consensus 16 ~~g~~VrivGkV~~~~g-~--~-~~l~s~d~-~~Vtv~l~~~~-------~--~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVTG-N--T-LLMQTSDL-GNVEIAMTPDS-------D--VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp GTTSEEEEEEEEEEEET-T--E-EEEECTTS-CEEEEECCSSC-------C--GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred hCCCeEEEEEEEeeeCC-C--E-EEEEeCCC-CEEEEEeCCCC-------C--cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 68999999999999995 2 3 34664433 35777666431 2 556899999999985432212345544
Q ss_pred e
Q 011364 107 N 107 (487)
Q Consensus 107 ~ 107 (487)
.
T Consensus 82 ~ 82 (114)
T 4gop_A 82 F 82 (114)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C | Back alignment and structure |
|---|
Probab=84.10 E-value=5.6 Score=34.25 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=46.0
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEE
Q 011364 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (487)
Q Consensus 26 ~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~ 105 (487)
...|+.|++-|+|.++-..|+.. .++...+ ..|+|.++... . -..+-+|.|.|+|.. +..|.
T Consensus 40 ~fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg-~~VtV~l~~pL-------~--~~~~~~VEViG~V~~------~~tI~ 101 (142)
T 2pi2_E 40 QFIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATIL 101 (142)
T ss_dssp GSTTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEE
T ss_pred hhCCCEEEEEEEEeEEcCCCCEE--EEEeCCC-cEEEEEeCCCC-------C--ccCCCEEEEEEEECC------CCcEE
Confidence 36899999999999995445433 4554443 35666665321 1 234779999999954 23466
Q ss_pred EeEEEEEcc
Q 011364 106 VNKIVLVGK 114 (487)
Q Consensus 106 ~~~i~vls~ 114 (487)
+..+.-++.
T Consensus 102 ~~~~~~fGd 110 (142)
T 2pi2_E 102 CTSYVQFKE 110 (142)
T ss_dssp EEEEEECCC
T ss_pred EEEEEecCC
Confidence 666655554
|
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A | Back alignment and structure |
|---|
Probab=82.26 E-value=2.4 Score=39.75 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=62.8
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhH-hccC
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGL 79 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~-~~~~ 79 (487)
..+.|++|... ...++|+|||.++ |. .|++.=++|.|.+| .|++++.....+ .+ ..
T Consensus 7 ~~~~I~~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~--~~~~~-- 72 (246)
T 1jmc_A 7 KVVPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVD--KFFPL-- 72 (246)
T ss_dssp CBCCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHH--HHGGG--
T ss_pred ceEEHHHCCCC--------CCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHHH--Hhhhh--
Confidence 44668888654 2357999999876 32 24666678999997 599999864321 12 23
Q ss_pred CCCCcEEEEEeeEeecCC-----CCceEEEEEeEEEEEccCC
Q 011364 80 ITTGASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 80 L~~gd~V~V~G~~~~~~~-----~~~~~el~~~~i~vls~~~ 116 (487)
|..|+++.+++--++... ..+.+||....-+.+.+|.
T Consensus 73 l~~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 73 IEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CCTTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred cccCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 999999999995443321 1347899887666666664
|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
Probab=81.81 E-value=1.3 Score=51.03 Aligned_cols=80 Identities=10% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCCCEEEEEEEEeeeecC----C-CeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCce
Q 011364 27 RVGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~----g-~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~ 101 (487)
..|+.|+|+|.|.+++.. | .++|+.|.|.+| .+.|++-++. |+..+. .|..+.+|.|+|++.... .
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg--~~evvvf~~~--~~~~~~-~l~~~~~~~v~G~v~~~~----~ 1110 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETG--ALEVVVFGRA--YEGVSP-KLKEDIPLLVLAEVEKGE----E 1110 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTE--EEEEC----------------CTTCEEEEEEEEC--------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCC--CEEEEEcHHH--HHHHHH-HhccCCEEEEEEEEEECC----C
Confidence 357889999999988752 2 499999999996 4888887653 333332 389999999999998643 3
Q ss_pred EEEEEeEEEEEccC
Q 011364 102 VELKVNKIVLVGKS 115 (487)
Q Consensus 102 ~el~~~~i~vls~~ 115 (487)
+.|.+.++.-++.+
T Consensus 1111 ~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1111 LRVLAQAVWTLEEV 1124 (1220)
T ss_dssp -CEEEEEEEEHHHH
T ss_pred cEEEEeeeecHHHH
Confidence 67888888766544
|
| >1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1 | Back alignment and structure |
|---|
Probab=80.90 E-value=13 Score=31.58 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=54.3
Q ss_pred CCCCCEEEEEEEEe--ee-ec--CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCc
Q 011364 26 DRVGLMIVVAGWVR--TL-RA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (487)
Q Consensus 26 ~~~~~~V~v~GwV~--~i-R~--~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~ 100 (487)
...++.|+|.|.|. ++ |. ...+.|. |.|+. ..|.|....-.++ +++.|.-|.|+|++...
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~--~~v~V~Y~GilPD-------lFrEGqgVVa~G~l~~~----- 89 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTFT-IYDAE--GSVDVSYEGILPD-------LFREGQGVVVQGELEKG----- 89 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEEE-EECSS--CEEEEEEESCCCT-------TCCTTSEEEEEEEECSS-----
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEEE-EEeCC--cEEEEEECCCCCc-------cccCCCeEEEEEEECCC-----
Confidence 35789999999999 45 43 2358875 78975 4688888765443 27889999999999642
Q ss_pred eEEEEEeEEEEEccCCCCC
Q 011364 101 KVELKVNKIVLVGKSDPSY 119 (487)
Q Consensus 101 ~~el~~~~i~vls~~~~~~ 119 (487)
-.+.+++ ||.||+..|
T Consensus 90 -g~F~A~e--VLAKhdekY 105 (136)
T 1sr3_A 90 -NHILAKE--VLAKHDENY 105 (136)
T ss_dssp -SEEEESS--CBCCSCCCC
T ss_pred -CeEEEEE--EEecCCCCC
Confidence 1345554 899997553
|
| >3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} | Back alignment and structure |
|---|
Probab=80.51 E-value=2.6 Score=34.23 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=35.4
Q ss_pred eEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEE
Q 011364 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (487)
Q Consensus 61 lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vl 112 (487)
++|++..+.. + +.. |+.|+-|.|+|.+....-+...+.+|+++|+.+
T Consensus 55 i~vv~~gk~A--e-~~~--l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQA--E-EWQ--YRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHH--H-HST--TCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHh--h-hhc--cCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 5666654322 2 445 999999999999998765545799999999876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 487 | ||||
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 2e-67 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 2e-65 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 6e-61 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 3e-57 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 5e-56 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 4e-55 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 7e-52 | |
| d1n9wa1 | 93 | b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) | 2e-12 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 8e-11 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 5e-09 | |
| d1l0wa1 | 104 | b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS | 2e-05 | |
| d1c0aa1 | 106 | b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS | 6e-05 |
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 216 bits (551), Expect = 2e-67
Identities = 92/348 (26%), Positives = 144/348 (41%), Gaps = 50/348 (14%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
++ R A +V+ AL ++ F I +P + + EG F V
Sbjct: 3 YVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV------ 56
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRA 255
D+FEK A+L S QL + VY P +R
Sbjct: 57 ------------------------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRM 92
Query: 256 ENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEK 314
E +TSRHL E+ ++ E+ F ++D M A L ++ L+ +++
Sbjct: 93 EEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPS 152
Query: 315 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFG 371
+D +L++ +A +L K E G DL E ER L E E +G
Sbjct: 153 ---------FPQDIPRLTHAEAKRIL-----KEELGYPVGQDLSEEAERLLGEYAKERWG 198
Query: 372 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 431
+ V+ YP+ ++ FY +DG T + L+ R E+ G QR R E L L
Sbjct: 199 SDWLFVTRYPRSVRPFYTYPEEDGTTRS--FDLLFRGLEITSGGQRIHRYEELLESLKAK 256
Query: 432 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 479
++ +++ YL++ YG PH GF +G ERL Q G+ N+R A FP
Sbjct: 257 GMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 211 bits (537), Expect = 2e-65
Identities = 70/356 (19%), Positives = 117/356 (32%), Gaps = 77/356 (21%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIW----ISSPIITASDCEGAGEQFCVTT 191
+ + ++ + FF + GF W I SPI + AGE
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGE------ 55
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-NAETYATALSNVYTFG 250
G+ + + LT S L A L ++
Sbjct: 56 ---------------------GMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLS 94
Query: 251 PTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 308
P R E+ + RH EF ++ E+ A ++D M + + R + +
Sbjct: 95 PNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKT 154
Query: 309 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE 368
+ + FE+ SE +
Sbjct: 155 KRF---------------------------------EVFEY---------SEVLEEFGSD 172
Query: 369 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 428
+ + I + + DG +L GE+ G +RE E + ++
Sbjct: 173 EKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKI 232
Query: 429 DELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 483
+ LN DS+ YL++ G + P AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 233 RKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPG 288
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 201 bits (511), Expect = 6e-61
Identities = 83/355 (23%), Positives = 141/355 (39%), Gaps = 38/355 (10%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
+ RT T A+ R++ + ++ F + +P + + EG F V
Sbjct: 32 VIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------ 85
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFR 254
+F+ A+L S Q N + A VY GP FR
Sbjct: 86 ------------------------TYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFR 121
Query: 255 AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQY-VVRYILDNCKEDMDFFNTWIE 313
AENSNT RH+ EF ++ E+AF + ++ + L + + +++
Sbjct: 122 AENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYP 181
Query: 314 KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373
++ + V+L+Y + IE+L A K+ + + + L + +
Sbjct: 182 ---VEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGK-LVRDKYDTD 237
Query: 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKL 433
I+ +P EI+ FY + + R E++ G+QR L+ R+ L
Sbjct: 238 FYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGL 297
Query: 434 NRD--SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486
+ + Y D YG PHAG G+G ER+V F ++NIR A FPR P +
Sbjct: 298 SPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLR 352
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 191 bits (486), Expect = 3e-57
Identities = 78/374 (20%), Positives = 130/374 (34%), Gaps = 64/374 (17%)
Query: 120 PIQKKRVSREFLRTKA-HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
P+ V+ E R K +L R + R + +F ++GF+ I +P++T +
Sbjct: 3 PLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA 62
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
EGA + S+ K L S QL +
Sbjct: 63 TPEGARDYLV----------------------------PSRVHKGKFYALPQSPQLFKQL 94
Query: 239 YATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 297
+ Y FR E+ R EF I+ E +F A ++++
Sbjct: 95 LMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLW--- 150
Query: 298 LDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL 357
L+ D+ F R + + + ++ W D
Sbjct: 151 LEVKGVDLGDFPVMTFAEAERRYGSDKP----------------DLRDESKWAPLWVIDF 194
Query: 358 ---QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 414
+ + E LT PK++ A ++ + A DM++ E+ GG
Sbjct: 195 PMFEDDGEGGLTAMHH------PFTSPKDMTAAELKAAPENAVANAYDMVING-YEVGGG 247
Query: 415 SQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 470
S R + + L +N R+ + + LD YG+ PHAG G +RL TG +
Sbjct: 248 SVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTD 307
Query: 471 NIRDAIPFPRTPGS 484
NIRD I FP+T +
Sbjct: 308 NIRDVIAFPKTTAA 321
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 187 bits (476), Expect = 5e-56
Identities = 103/372 (27%), Positives = 160/372 (43%), Gaps = 42/372 (11%)
Query: 117 PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176
P P K + + + R A+ ++R+++ A FF ENGFI I +P I
Sbjct: 3 PLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKII 62
Query: 177 ASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-N 235
A+ EG E F +FE+ AFL S QL
Sbjct: 63 ATATEGGTELFP------------------------------MKYFEEDAFLAESPQLYK 92
Query: 236 AETYATALSNVYTFGPTFRAENSNTSRHLAEFWMI-EPELAFADLKDDMACATAYLQYVV 294
A+ L VY P FRAE NT+RHL E W I D ++ M+ + + +
Sbjct: 93 EIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAI 152
Query: 295 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 354
Y+ ++ +++D N +E+ + F ++SY A+E+L K+ +
Sbjct: 153 NYVREHNAKELDILNFELEEPKLP---------FPRVSYDKALEILGDLGKEIPWGEDID 203
Query: 355 CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 414
+ + +Y+ E + YP E K FY+ + D+ + L R E+ G
Sbjct: 204 TEGERLLGKYMMEN-ENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSG 262
Query: 415 SQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 474
QRE R + L ++ E LN +S+ +YL YG PH GFGLG ERL++ + NIR+
Sbjct: 263 GQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIRE 322
Query: 475 AIPFPRTPGSVE 486
I FPR +
Sbjct: 323 VILFPRDRRRLT 334
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 185 bits (471), Expect = 4e-55
Identities = 60/356 (16%), Positives = 108/356 (30%), Gaps = 46/356 (12%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
+ VR+ + A +F GF+ + +P++ + F
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH-------- 66
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
+ + +L ++ +L +
Sbjct: 67 --------------------NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI 106
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 319
+ RH EF M+E +A+AD D + + + + + +L K K
Sbjct: 107 SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKL 166
Query: 320 LSTVA------ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEHERYLTEEAFGG 372
A E D L DA + L + WG + +E + E
Sbjct: 167 TMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGLGRIVTEIFDEVAEAHL-I 224
Query: 373 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432
P +++YP E+ R + + + + E+ G E R E
Sbjct: 225 QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG-REIGNGFSELNDAEDQAERFQEQV 283
Query: 433 LNRDS--------YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 480
+ + Y+ YG P AG G+G +R++ T IRD I FP
Sbjct: 284 NAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPA 339
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 177 bits (450), Expect = 7e-52
Identities = 72/379 (18%), Positives = 123/379 (32%), Gaps = 63/379 (16%)
Query: 117 PSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169
P +P+ S E +L R R+R+ + A F GF+
Sbjct: 2 PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQ 61
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229
+ +P +T S EGA + + L
Sbjct: 62 VETPFLTKSTPEGARDFLV----------------------------PYRHEPGLFYALP 93
Query: 230 VSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288
S QL + A L + FR E+ +F ++ E++F +++D +
Sbjct: 94 QSPQLFKQMLMVAGLDRYFQIARCFRDEDLRA-DRQPDFTQLDLEMSFVEVEDVLELNER 152
Query: 289 YLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE 348
+ +V R L ++ E Y L + +F
Sbjct: 153 LMAHVFREALGVELPLPFPRLSYEEAMER---------------YGSDKPDLRREGFRFL 197
Query: 349 FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 408
++V + E E T S +P++ + + D GR A LV
Sbjct: 198 WVVDFPLLEWDEEEEAWTYM----HHPFTSPHPED---LPLLEKDPGRVRALAYDLVLNG 250
Query: 409 GELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQ 464
E+ GGS R L + + + ++L+ YG+ PH G G +RL+
Sbjct: 251 VEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLA 310
Query: 465 FATGVENIRDAIPFPRTPG 483
TG +IR+ I FP+
Sbjct: 311 LMTGSPSIREVIAFPKNKE 329
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 61.0 bits (148), Expect = 2e-12
Identities = 12/95 (12%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85
VG + + G++ R + F+ + D S + + +
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPES-----------A 58
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+ ++G VV + + +E++ ++ ++ + P
Sbjct: 59 LRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 56.6 bits (136), Expect = 8e-11
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + + + + +
Sbjct: 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI-TAPKKKVDPELFKLIPKLRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSD 116
++G V + +K E+ KIV++ +++
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAE 102
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.4 bits (125), Expect = 5e-09
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q + + F+ + + L
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANK 75
Query: 68 DAEGYDQ--VKSGLITTGASIWIQGNVVPS-----QGSKQKVELKVNKIVLVGKSDP 117
+ +G + + + ++G V + Q +E+ + KI + ++
Sbjct: 76 EGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L + + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVA----HPASPAYATAERVRPEWVVR 70
Query: 88 IQGNVVPSQGSKQK-----VELKVNKIVLVGKS 115
+G V + VE++++ + ++ ++
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (93), Expect = 6e-05
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R S+ FI++ D + + + + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRA---DALKLASELRNEFCIQ 70
Query: 88 IQGNVVPSQGSKQ-------KVELKVNKIVLVGKSD 116
+ G V ++E+ + + ++ ++D
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.85 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.83 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.83 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.81 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.81 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.73 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 99.67 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 98.71 | |
| d12asa_ | 327 | Asparagine synthetase {Escherichia coli [TaxId: 56 | 98.62 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 98.49 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 98.41 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 98.35 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 97.96 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.72 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.65 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 97.54 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 97.47 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.3 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 96.82 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 96.82 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 96.28 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 95.61 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 94.96 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 94.88 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 94.35 | |
| d2pi2e1 | 115 | Replication protein A 14 KDa (RPA14) subunit {Huma | 91.99 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 88.27 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 86.56 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 84.86 | |
| d1g5ha2 | 290 | The aaRS-like accessory subunit of mitochondrial p | 81.99 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-78 Score=616.69 Aligned_cols=321 Identities=26% Similarity=0.438 Sum_probs=270.3
Q ss_pred ChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCC
Q 011364 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206 (487)
Q Consensus 127 ~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~ 206 (487)
+.|...++||||+|++.++++|++||+|++++|+||.++||+||+||+|++++|||++++|.++
T Consensus 23 ~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~eg~~~~f~~~---------------- 86 (353)
T d1eova2 23 NLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVT---------------- 86 (353)
T ss_dssp CHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEE----------------
T ss_pred CHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcchhccccce----------------
Confidence 4566668999999999999999999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCccccccccCcccccccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccCC-HHHHHH
Q 011364 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMA 284 (487)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~ 284 (487)
+++.++||++|||+|| +++++|++||||||||||||++++.||||||||||||++|+| ++++|+
T Consensus 87 --------------~~~~~~yL~~Spel~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~ 152 (353)
T d1eova2 87 --------------YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLD 152 (353)
T ss_dssp --------------ETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHH
T ss_pred --------------eeCCcceeccchhhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHH
Confidence 5577889999999998 688999999999999999999988899999999999999997 899999
Q ss_pred HHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHH--
Q 011364 285 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE-- 362 (487)
Q Consensus 285 ~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e-- 362 (487)
++|++++++++.+...+...+......... .........++.++++.||++.+++.+..... ..++....+
T Consensus 153 ~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ri~~~ea~~~l~~~~~~~~~----~~~~~~~~~~~ 225 (353)
T d1eova2 153 TLSELFVFIFSELPKRFAHEIELVRKQYPV---EEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGD----FEDLSTENEKF 225 (353)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHSCC---CCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCT----TCCCCHHHHHH
T ss_pred HHHHHHhhhccccchhhhhhhhhhcccCcc---ceeeccCCCceeeeehHhhHHHHHHHhhhccc----ccccchhhHHH
Confidence 999999999999887665444332221110 00111234578899999999999887554322 233444333
Q ss_pred --hhhhhccccCccEEEEecCCcCccccccccC-CCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCccc--
Q 011364 363 --RYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS-- 437 (487)
Q Consensus 363 --~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~-- 437 (487)
+.+.+.+ ...++||+|||.+++|||++.++ ++++++|||||++|+ ||+||++|++++++|+++++..|++++.
T Consensus 226 l~~~i~~~~-~~~~~~i~~~P~~~~p~~~~~~~~~~~~a~rfeL~~~G~-El~nG~~e~~d~~~~~~r~~~~~~~~~~~~ 303 (353)
T d1eova2 226 LGKLVRDKY-DTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPG 303 (353)
T ss_dssp HHHHHHHHS-CCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTT
T ss_pred HHHHHHhhc-cCCcccccCCcHHHhhhhhCCChhhhhhhhceeeeeece-EEcceecccCCHHHHHHHHHHcCCChhhhH
Confidence 3333333 32578899999999999977554 556899999999995 9999999999999999999999988764
Q ss_pred HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 438 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 438 ~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
++|||+|++||+|||||||||||||+|++||.+|||||++|||++++|.
T Consensus 304 ~~~yl~al~~G~PP~~G~glGiDRL~m~l~~~~~Irdvi~FPr~~~~~~ 352 (353)
T d1eova2 304 LKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLR 352 (353)
T ss_dssp THHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBTTBCC
T ss_pred HHHHHHHhHcCCCCCceeeeHHHHHHHHHhCCCcHHheeCCCCCCCCCC
Confidence 7999999999999999999999999999999999999999999999985
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=8.2e-74 Score=580.21 Aligned_cols=315 Identities=34% Similarity=0.566 Sum_probs=272.0
Q ss_pred ChhhhhhcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCC
Q 011364 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206 (487)
Q Consensus 127 ~~~~~r~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~ 206 (487)
+.++..++||||+|++.++++|++||+|+++||+||.++||+||+||+|++++++|++++|.+
T Consensus 13 ~~~~r~~~R~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~----------------- 75 (335)
T d1b8aa2 13 ELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM----------------- 75 (335)
T ss_dssp CHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEE-----------------
T ss_pred CHHHHhhchhheeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCchhhhhccc-----------------
Confidence 455556899999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCccccccccCcccccccchhhhH-HHHhccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHH
Q 011364 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMA 284 (487)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~L~~Spql~l-~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~ 284 (487)
.++++++||++|||+|| +++++|++||||||||||||++++.||++||||+|+|+++. +++++|+
T Consensus 76 -------------~~~~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~ 142 (335)
T d1b8aa2 76 -------------KYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMS 142 (335)
T ss_dssp -------------EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHH
T ss_pred -------------cccccccccccChHHHHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHH
Confidence 23467889999999999 58899999999999999999998889999999998888875 8999999
Q ss_pred HHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHH---
Q 011364 285 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH--- 361 (487)
Q Consensus 285 ~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~--- 361 (487)
++++++..+.+.+...+..++++++... ...+.+|+++++.||++++++.+.++ .++.++....
T Consensus 143 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~r~~~~e~~~~l~~~~~~~----~~~~~~~~~~~~~ 209 (335)
T d1b8aa2 143 FLERLVAHAINYVREHNAKELDILNFEL---------EEPKLPFPRVSYDKALEILGDLGKEI----PWGEDIDTEGERL 209 (335)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHTTCCC---------CCCCSSCCEEEHHHHHHHHHHTTCCC----CTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchhhhhcccc---------ccCCCCcccccHHHHHHHHHhhcccc----Ccccccccccccc
Confidence 9999999999998766554444332211 12457899999999999998876553 3455555443
Q ss_pred -HhhhhhccccCccEEEEecCCcCccccccccCC-CCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHH
Q 011364 362 -ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 439 (487)
Q Consensus 362 -e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~ 439 (487)
+.++.+.... .|+||+|||.+++|||+..+++ +.++++||||++|+ ||+||++|++++++|+++++..|++++.++
T Consensus 210 ~~~~~~~~~~~-~~~fi~~~P~~~~pl~~~~~~~~~~~a~rfel~~~G~-El~nG~~e~~~~~~~~~r~~~~~~~~e~~e 287 (335)
T d1b8aa2 210 LGKYMMENENA-PLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPESFE 287 (335)
T ss_dssp HHHHHHHHHCC-SEEEEESCBGGGSCTTBCEETTEEEEESEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGH
T ss_pred eeeeeeccccc-ccceeecChHHhhhccccccCCCcHHHHhhccccCce-eeecccchhcCHHHHHHHHHHcCCCHHHHH
Confidence 3344443333 6789999999999999776543 46788999999997 999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011364 440 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 486 (487)
Q Consensus 440 ~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~~ 486 (487)
|||+|++||+|||||||||+|||+|++||.+|||||++|||++++|.
T Consensus 288 ~yl~al~~G~Pp~~G~glGiDRLvm~l~~~~~IrdVi~FPr~~~~~~ 334 (335)
T d1b8aa2 288 FYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 334 (335)
T ss_dssp HHHHTTSBCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred HHHHHhhcCCCCCceeeeHHHHHHHHHhCCCcHHheEcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999984
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=2.2e-73 Score=578.44 Aligned_cols=309 Identities=20% Similarity=0.319 Sum_probs=251.8
Q ss_pred hhhhhcccccC-CChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCC
Q 011364 129 EFLRTKAHLRP-RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207 (487)
Q Consensus 129 ~~~r~~r~l~~-R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~ 207 (487)
+...+|||||+ |++.++++|++||++++++|+||.++||+||+||+|++++|+|++++|.+.
T Consensus 3 ~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~----------------- 65 (342)
T d1e1oa2 3 EVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH----------------- 65 (342)
T ss_dssp THHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-----------------
T ss_pred HhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeec-----------------
Confidence 34448999999 888999999999999999999999999999999999999999999999652
Q ss_pred CCCCCCCccccccccCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEccCCHHHHHHHH
Q 011364 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
.++++.++||+||||+||| ++++|++||||||||||+|++ ++||+|||||||||++|+|++|+|+++
T Consensus 66 -----------~~~~~~~~yL~~Spql~~k~~l~~g~~~vf~i~p~FR~E~~-~~rHl~EFtmlE~e~a~~~~~d~m~~~ 133 (342)
T d1e1oa2 66 -----------HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELT 133 (342)
T ss_dssp -----------ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCC-CC-CCSEEEEEEEEEESCCHHHHHHHH
T ss_pred -----------ccCCCcccccchhhHHHHHHHhhhcccceeeeccccccccc-cccchHHHHHHHHHHHhhhhhhHHHhh
Confidence 2577899999999999996 789999999999999999988 679999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHH-------------------HHhcccc
Q 011364 287 TAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL-------------------IKAKKKF 347 (487)
Q Consensus 287 e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l-------------------~~~~~~~ 347 (487)
|+|+++++..+.+.+........ .....+++++++.+++..+ +..+...
T Consensus 134 e~l~~~i~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (342)
T d1e1oa2 134 ESLFRTLAQEVLGTTKVTYGEHV------------FDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITV 201 (342)
T ss_dssp HHHHHHHHHHHHSSSEEEETTEE------------EETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHhCcchhhccchh------------cccCCchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHcCCCc
Confidence 99999999999877643221110 0122344555555554432 2223322
Q ss_pred cccccccc-ccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHH
Q 011364 348 EFLVKWGC-DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEG 426 (487)
Q Consensus 348 ~~~~~~~~-~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~ 426 (487)
+ ..||. ++.++....+++.++. +|+||+|||.+++|||++.++++.++++|||+++|+ ||+||++|+++++++.+
T Consensus 202 ~--~~~~~~~~~~~~~~~~~~~~~~-~p~fi~~~P~~~~~f~~~~~~~~~~~~~fdl~~~g~-El~~G~~r~~d~~~~~~ 277 (342)
T d1e1oa2 202 E--KSWGLGRIVTEIFDEVAEAHLI-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAE 277 (342)
T ss_dssp C--TTCCHHHHHHHHHHHHTGGGCC-SCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHH
T ss_pred c--cccchhHHHHHHHHHhhHhhcc-CCCcCCCCccccChhhccccccchhhhhhhcccCCE-eecCCccccCCHHHHHH
Confidence 2 23432 2333444555666666 899999999999999998888888999999999995 99999999999999988
Q ss_pred HHHH------cCCCccc--HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011364 427 RLDE------LKLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 482 (487)
Q Consensus 427 ~~~~------~g~~~~~--~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~ 482 (487)
++++ .+.++.. ++|||+|++||+|||||||||+|||+|++||.+|||||++|||..
T Consensus 278 r~~~~~~~~~~~~~~~~~~d~~yl~a~~~G~pPh~G~glG~dRlvm~l~g~~nIrdvi~FPr~r 341 (342)
T d1e1oa2 278 RFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMR 341 (342)
T ss_dssp HHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCC
T ss_pred HHHHHHHHHhcCcchhhhhhHHHHHHhhCCCCCccchhHHHHHHHHHHhCCCcHHHhccCCCCC
Confidence 8753 2333322 389999999999999999999999999999999999999999964
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=100.00 E-value=3.1e-73 Score=568.42 Aligned_cols=299 Identities=29% Similarity=0.460 Sum_probs=224.5
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCC
Q 011364 134 KAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (487)
Q Consensus 134 ~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (487)
|||||+|++.++++|++||+|+++||+||.++||+||+||+|++++++|++++|.+
T Consensus 1 yR~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~------------------------ 56 (304)
T d1n9wa2 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV------------------------ 56 (304)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC----------------------------------------
T ss_pred CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCCCCCceECC------------------------
Confidence 68999999999999999999999999999999999999999999999998888854
Q ss_pred CccccccccCcccccccchhhhHHHHhccCCceEEEecccccCCCCCCcccccccceeeEEccC-CHHHHHHHHHHHHHH
Q 011364 214 LIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQY 292 (487)
Q Consensus 214 ~~~~~~~~~~~~~~L~~Spql~l~ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~ 292 (487)
+|+++++||++|||+|||++++|++||||||||||+|++.++||+|||||||||++|. +++++|+++|++++.
T Consensus 57 ------~~~~~~~~L~~Spel~k~ll~~g~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~ 130 (304)
T d1n9wa2 57 ------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAE 130 (304)
T ss_dssp ------------------CHHHHHHHHHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHH
T ss_pred ------cccccchhccccHHHHHHHhhcccccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999987889999999999999986 688999999999999
Q ss_pred HHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhh----hhc
Q 011364 293 VVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL----TEE 368 (487)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l----~e~ 368 (487)
++..+.+.+...+..++... .....+++++++.||+++++.... ..++.++....++.+ .+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~l~~~~~~~ 196 (304)
T d1n9wa2 131 MLEEALNTAGDEIRLLGATW---------PSFPQDIPRLTHAEAKRILKEELG-----YPVGQDLSEEAERLLGEYAKER 196 (304)
T ss_dssp HHHHHHHHSHHHHHHTTCCC---------CCCSSSCCEEEHHHHHHHHHHTSC-----CCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhccce---------ecccchhhhhhHHHHHHHHHHHhC-----CCcCCCccHHHHHHHHHHHHhh
Confidence 99998877655554433211 123457788999999998876411 234455555555544 333
Q ss_pred cccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 011364 369 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG 448 (487)
Q Consensus 369 ~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G 448 (487)
... .|+||+|||.+++|||+... ++++++|||||++|+ ||+||++|++++++|.+++++.|++++.++|||+|+++|
T Consensus 197 ~~~-~~~fi~~~P~~~~p~~~~~~-~~~~a~rfel~~~G~-El~nG~~e~~d~~~l~~r~~~~~~~~e~~~~yl~al~~G 273 (304)
T d1n9wa2 197 WGS-DWLFVTRYPRSVRPFYTYPE-EDGTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYG 273 (304)
T ss_dssp TCC-SEEEEECCBGGGSCTTBCBC-TTSBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBC
T ss_pred cCC-ceEEEeCChhhhCchhhccc-ccceeehhccccCcE-EEeccccccCCHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 444 79999999999999997543 456889999999997 999999999999999999999999999999999999999
Q ss_pred CCCccceeccHHHHHHHHcCCCCcccccccC
Q 011364 449 SVPHAGFGLGFERLVQFATGVENIRDAIPFP 479 (487)
Q Consensus 449 ~pP~~G~giGidRL~m~l~g~~~Irdv~~FP 479 (487)
+|||||||||+|||+|++||.+|||||++||
T Consensus 274 ~PP~~G~glGiDRL~m~l~g~~~Irdv~~FP 304 (304)
T d1n9wa2 274 MPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304 (304)
T ss_dssp CCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC
T ss_pred CCCCceeehHHHHHHHHHhCCCcHHheecCC
Confidence 9999999999999999999999999999999
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=5.2e-72 Score=570.09 Aligned_cols=312 Identities=22% Similarity=0.332 Sum_probs=256.2
Q ss_pred CCCCCccccC------hhhhh-hcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceee
Q 011364 118 SYPIQKKRVS------REFLR-TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT 190 (487)
Q Consensus 118 ~~p~~~~~~~------~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt 190 (487)
++|++.++++ .+++| ++||||+|++..+++||+||+|++++|+||.++||+||+||+|++++|+|++..|.++
T Consensus 3 ~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~~ 82 (356)
T d1l0wa3 3 PFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPY 82 (356)
T ss_dssp SSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEEC
T ss_pred CcccCcccccccccccCHHHHhhchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCcccccchhhh
Confidence 4788765332 22355 9999999999999999999999999999999999999999999999999999877542
Q ss_pred ecCCCcccccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccc
Q 011364 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWM 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtm 269 (487)
.++++.++||++|||+||| ++++|++|||+|+||||||++ ++||+|||||
T Consensus 83 ----------------------------~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~-~t~H~~EFtm 133 (356)
T d1l0wa3 83 ----------------------------RHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDL-RADRQPDFTQ 133 (356)
T ss_dssp ----------------------------TTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCC-CSSCCSEEEE
T ss_pred ----------------------------hcccccccCCCcChhHHHHHhhhcccCcEEEEecccccccc-CCcchhhhhH
Confidence 2467889999999999996 789999999999999999999 5689999999
Q ss_pred eeeEEccCCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccc-
Q 011364 270 IEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE- 348 (487)
Q Consensus 270 lE~e~~~~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~- 348 (487)
||||++|+|++++|+++|+|++++++.+.+.+ ...+|++++|.+|+..+........
T Consensus 134 LE~e~~~~~~~~~m~~~E~li~~v~~~~~~~~----------------------~~~~f~r~~~~~a~~~~~~~~~~l~~ 191 (356)
T d1l0wa3 134 LDLEMSFVEVEDVLELNERLMAHVFREALGVE----------------------LPLPFPRLSYEEAMERYGSDKPDLRR 191 (356)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHHTCCC----------------------CCSSCCEEEHHHHHHHHSSSSCCCSC
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCC----------------------CCCCCCcchHHhhHHHHhcCcHhHHH
Confidence 99999999999999999999999998876432 3457899999999887643221111
Q ss_pred --cccccccccch--HHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHH
Q 011364 349 --FLVKWGCDLQS--EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYL 424 (487)
Q Consensus 349 --~~~~~~~~l~~--~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~ 424 (487)
....|+.++.. ..+......+ . .|+|+++||...+++++ +++...+++||||++|+ ||+||++|++++++|
T Consensus 192 ~~~~~~~~~d~~~~~~~~~~~~~~~-~-~~~f~~~~p~~~~~~~~--~~~~~~a~~FdL~~~G~-ElanG~~r~~d~~~~ 266 (356)
T d1l0wa3 192 EGFRFLWVVDFPLLEWDEEEEAWTY-M-HHPFTSPHPEDLPLLEK--DPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQ 266 (356)
T ss_dssp CSCCEEEEECCBSBCCCTTTSCCCB-S-SCTTBCBCSTTTTHHHH--CGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHH
T ss_pred Hhhhhhhccccccccccchhcceee-e-eCCcccCChhhhchhhc--CCCcceeeeeecccCCE-EeeccEEEeCcHHHH
Confidence 11223333211 0111101111 2 58899999998876543 33455788999999997 999999999999999
Q ss_pred HHHHHHcCCCcc----cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 425 EGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 425 ~~~~~~~g~~~~----~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
.++++..|++++ .++|||+|++||+|||||||||+|||+|++||.+|||||++|||+++++
T Consensus 267 ~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Irdvi~FPR~~~r~ 331 (356)
T d1l0wa3 267 ARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGK 331 (356)
T ss_dssp HHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSC
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHhhCCCCCcceEEEcHHHHHHHHcCCCcHHheecCCCCCCCC
Confidence 999999888764 3789999999999999999999999999999999999999999999976
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-72 Score=567.68 Aligned_cols=311 Identities=23% Similarity=0.324 Sum_probs=256.2
Q ss_pred CCCCccccChhhhh-hcccccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcc
Q 011364 119 YPIQKKRVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197 (487)
Q Consensus 119 ~p~~~~~~~~~~~r-~~r~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~ 197 (487)
+|++.+..+.+..| ++||||+|++..+++|++||+|++++|+||.++||+||+||+|++++|+|++..|..+
T Consensus 2 lP~~~~~~~~~e~Rl~~R~LdLr~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~------- 74 (346)
T d1c0aa3 2 LPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPS------- 74 (346)
T ss_dssp CSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEEC-------
T ss_pred CCCCCCCCCCHHHHhhchHHhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcccccccccc-------
Confidence 57765544444555 9999999999999999999999999999999999999999999999999998877542
Q ss_pred cccCCCCCCCCCCCCCCccccccccCcccccccchhhhHH-HHhccCCceEEEecccccCCCCCCcccccccceeeEEcc
Q 011364 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (487)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (487)
..+++.++||++|||+||| ++++|++||||||||||||++ +.+|+|||||||||++|
T Consensus 75 ---------------------~~~~~~~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~-~~~H~~EFtmLE~e~a~ 132 (346)
T d1c0aa3 75 ---------------------RVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDL-RADRQPEFTQIDVETSF 132 (346)
T ss_dssp ---------------------SSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCC-BTTBCSEEEEEEEEEES
T ss_pred ---------------------ccCCCccccCCcCHHHHHHHHhhcCCCceEEEeeecccccc-CchhhhHhhhhcccccc
Confidence 1345788899999999996 788999999999999999999 56777999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccc----cc
Q 011364 277 ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL----VK 352 (487)
Q Consensus 277 ~~~~~lm~~~e~li~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~----~~ 352 (487)
+|++++|+++|+|+++++..+.+.+ ..+|+++++.|++..+......+... ..
T Consensus 133 ~~~~~~m~~~E~li~~l~~~~~~~~-----------------------~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 189 (346)
T d1c0aa3 133 MTAPQVREVMEALVRHLWLEVKGVD-----------------------LGDFPVMTFAEAERRYGSDKPDLRDESKWAPL 189 (346)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSCC-----------------------CCSCCEEEHHHHHHHHSCSSCCTTCSSCCCEE
T ss_pred ccHhHhHHHHHHHHHHHHHHHhCCc-----------------------CCccceeeHHHHHHHhcccccchhhHhhhhhh
Confidence 9999999999999999998876431 13678899999876553221111111 11
Q ss_pred cccccchHHHhhhhhccccCccEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcC
Q 011364 353 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 432 (487)
Q Consensus 353 ~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g 432 (487)
|+.++... + ...+.... .+++++++|...+|+++..++++.++++||||++|+ ||+||++|+++++++++++++.|
T Consensus 190 ~~~~~~~~-~-~~~~~~l~-~~~~~~~~p~~~~~~~~~~~~~~~~a~~fdl~~~G~-El~nG~~rl~d~~~~~~r~~~~~ 265 (346)
T d1c0aa3 190 WVIDFPMF-E-DDGEGGLT-AMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILG 265 (346)
T ss_dssp EEECCBSE-E-ECSSSCEE-ESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTT
T ss_pred cccccccc-c-hhccccee-eeEeeccccchhhHHHhccCCccccccccccCcCCE-EEechhhhhchHHHHHHHHHHhC
Confidence 22222110 0 01111122 456677889999999988788888999999999996 99999999999999999999999
Q ss_pred CCc----ccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011364 433 LNR----DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 485 (487)
Q Consensus 433 ~~~----~~~~~yl~~~~~G~pP~~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~~ 485 (487)
+++ +.++|||+|++||+|||||||||+|||+|++||.+|||||++|||+++..
T Consensus 266 ~~~~~~~e~~~~ylda~~~G~PP~~G~glGldRL~m~l~g~~~Irdvi~FPRt~~~~ 322 (346)
T d1c0aa3 266 INEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAA 322 (346)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTSC
T ss_pred ccccchHHHHHHHHHHHHCCCCCceeEeEHHHHHHHHHcCCCcHHheecCCCCCCCC
Confidence 987 56889999999999999999999999999999999999999999999743
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-69 Score=537.63 Aligned_cols=283 Identities=24% Similarity=0.374 Sum_probs=236.4
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 137 l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
||+|++..+++|++||+|++++|+||.++||+||+||+|++........++. +... .
T Consensus 3 l~l~~~~~~~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~-~~~~----------------------~ 59 (293)
T d1nnha_ 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG-EGME----------------------P 59 (293)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC-CCCC----------------------C
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCcccc-Cccc----------------------c
Confidence 7899999999999999999999999999999999999999764432222211 1110 1
Q ss_pred ccccccCcccccccchhhhHH-HHhccCCceEEEecccccCCC--CCCcccccccceeeEEccCCHHHHHHHHHHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 293 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l~-ll~~g~~kvfeI~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~ 293 (487)
.+.+||++++||++|||+||| ++++|++||||||||||||+. +|.||||||||||||++|+|++|+|+++|++++++
T Consensus 60 ~~~~~~~~~~yL~~SPel~lk~lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~ 139 (293)
T d1nnha_ 60 AEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGL 139 (293)
T ss_dssp CEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCceeecccChhhhHHHHHHhccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 235789999999999999996 889999999999999999964 46799999999999999999999999999999999
Q ss_pred HHHhhccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCc
Q 011364 294 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 373 (487)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~ 373 (487)
++.+.+.+..++. ...+|++++|.||++.+ |.|.. ..+. +. .
T Consensus 140 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~eal~~~-------------g~d~~------~~~~-~~-~ 181 (293)
T d1nnha_ 140 FRKAEEWTGREFP-----------------KTKRFEVFEYSEVLEEF-------------GSDEK------ASQE-ME-E 181 (293)
T ss_dssp HHHHHHHHSSCCC-----------------CCSSCEEEEHHHHHHHT-------------SSHHH------HHHH-CS-S
T ss_pred HHHHHHHhCcccc-----------------cCCccccccHHhhhccc-------------Ccccc------cccc-cc-c
Confidence 9987654332221 23478899999987532 21111 1111 23 7
Q ss_pred cEEEEecCCcCccccccccCCCCceEEEEEEecCeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcC-CCCc
Q 011364 374 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPH 452 (487)
Q Consensus 374 p~fi~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G-~pP~ 452 (487)
|+|++|||. +||++.+++...+.+|+++++|. ||+||++|++|+++|++++++.|++++.++|||+|++|| ||||
T Consensus 182 p~~~~~~p~---~f~~~~~~~~~~~~~~~l~~~g~-Elang~~el~d~~~~~~r~~~~gl~~e~~~~yl~a~~~G~mPP~ 257 (293)
T d1nnha_ 182 PFWIINIPR---EFYDREVDGFWRNYDLILPYGYG-EVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPS 257 (293)
T ss_dssp CEEEECCCC---CTTBCEETTEECEEEEEETTTTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCE
T ss_pred ceeccccch---hhcccccccccccceeEecccCc-ccccccccccCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 999999994 58877665555677899999995 999999999999999999999999999999999999999 8999
Q ss_pred cceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011364 453 AGFGLGFERLVQFATGVENIRDAIPFPRTPGS 484 (487)
Q Consensus 453 ~G~giGidRL~m~l~g~~~Irdv~~FPr~~~~ 484 (487)
||||||+|||+|+++|.+|||||++|||+||.
T Consensus 258 ~G~glGiDRL~m~l~g~~~Irdv~~FPR~~g~ 289 (293)
T d1nnha_ 258 AGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 289 (293)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTS
T ss_pred CeEeehHHHHHHHHhCCCcHHheecCCCCCCC
Confidence 99999999999999999999999999999985
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.85 E-value=2.1e-21 Score=160.60 Aligned_cols=97 Identities=16% Similarity=0.282 Sum_probs=88.2
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhHhccCCCCCcEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSGLITTGASI 86 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~~~~~L~~gd~V 86 (487)
|+|+|.||.+. +.|+.|+|+|||+++|.+|+++|++|||++| .+|||++++.. .|+.++. |+.||+|
T Consensus 3 RTh~~~el~~~------~~G~~V~v~Gwv~~~R~~g~i~Fi~LrD~sg--~iQ~v~~~~~~~~~~~~~~~~--l~~es~v 72 (103)
T d1b8aa1 3 RTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDG--IVQITAPKKKVDPELFKLIPK--LRSEDVV 72 (103)
T ss_dssp CSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSCHHHHHHGGG--CCTTCEE
T ss_pred cccChhhCChh------HCCCEEEEEEEEehhccCCCcEEEEEEcCCE--eeeEEEeccccchhhhhHHhh--CCcceEE
Confidence 78999999875 7899999999999999999999999999997 49999997653 2677778 9999999
Q ss_pred EEEeeEeecCCCCceEEEEEeEEEEEccCC
Q 011364 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 87 ~V~G~~~~~~~~~~~~el~~~~i~vls~~~ 116 (487)
.|+|++.+++.+++++||++++++|||+|+
T Consensus 73 ~V~G~v~~~~~~~~~iEi~v~~i~ils~a~ 102 (103)
T d1b8aa1 73 AVEGVVNFTPKAKLGFEILPEKIVVLNRAE 102 (103)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEECBC
T ss_pred EEEEEEEECCCCCccEEEEeeEEEEEEecC
Confidence 999999999988888999999999999986
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.83 E-value=1.4e-20 Score=155.39 Aligned_cols=98 Identities=18% Similarity=0.353 Sum_probs=87.7
Q ss_pred ccceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEE
Q 011364 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (487)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V 88 (487)
.|+|+|.||.+. +.|+.|+|+|||+++|++|+++|++|||++|. +||+++.+...|+.+++ |+.||+|.|
T Consensus 2 ~RTh~~geL~~~------~~g~~V~l~GWV~~~R~~g~i~Fi~LRD~~G~--iQ~v~~~~~~~~~~~~~--l~~Es~I~V 71 (104)
T d1l0wa1 2 RRTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRA 71 (104)
T ss_dssp CCSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEE
T ss_pred ccccccccCChH------HCCCEEEEEEEEEehhcCCCeEEEEEECCCCc--eEEecccchhHHHHHhh--cCcccEEEE
Confidence 578999999864 89999999999999999999999999999974 99999987777888888 999999999
Q ss_pred EeeEeecCC-----CCceEEEEEeEEEEEccCC
Q 011364 89 QGNVVPSQG-----SKQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 89 ~G~~~~~~~-----~~~~~el~~~~i~vls~~~ 116 (487)
+|+|.+++. .++++||++++++|||+|.
T Consensus 72 ~G~V~~r~~~n~~~~tG~iEi~v~~i~iL~~ak 104 (104)
T d1l0wa1 72 KGLVRLRPEPNPRLATGRVEVELSALEVLAEAK 104 (104)
T ss_dssp EEEEEECSSCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EEEEeeCCccCCCCCCCCEEEEEeEEEEEEcCC
Confidence 999987664 2457999999999999983
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.83 E-value=2.9e-20 Score=150.87 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=81.6
Q ss_pred ceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEe
Q 011364 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (487)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G 90 (487)
++.|+||.+ +.|++|+|+|||+++|.+||++|++|||++|. +||+++... . ++.||+|.|+|
T Consensus 2 R~~I~dl~~-------~~g~~V~v~GwV~~~R~~gk~~Fi~LrD~sg~--iQ~v~~~~~-------~--~~~e~~v~v~G 63 (93)
T d1n9wa1 2 RVLVRDLKA-------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLK-------L--PLPESALRVRG 63 (93)
T ss_dssp BCCGGGGGG-------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEESCC-------C--CCTTCEEEEEE
T ss_pred cEEhHHhhh-------cCCCEEEEEEEEEeEEeCCCcEEEEEEcCCcc--ceEEecccc-------c--cccceEEEEEE
Confidence 356888843 68999999999999999999999999999974 999998752 4 88999999999
Q ss_pred eEeecCCCCceEEEEEeEEEEEccCCCCCC
Q 011364 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (487)
Q Consensus 91 ~~~~~~~~~~~~el~~~~i~vls~~~~~~p 120 (487)
++.+++.+++++||++++++||++|..++|
T Consensus 64 ~v~~~~~~~~~~Ei~v~~i~il~~a~~plP 93 (93)
T d1n9wa1 64 LVVENAKAPGGLEVQAKEVEVLSPALEPTP 93 (93)
T ss_dssp EEEECTTSTTSEEEEEEEEEEEECCCSCCC
T ss_pred EEEECCCCCCCEEEEEeEEEEEecCCCCCC
Confidence 999999888899999999999999985555
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=4.4e-20 Score=153.23 Aligned_cols=97 Identities=18% Similarity=0.367 Sum_probs=84.6
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc-chHhHhccCCCCCcEEEE
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWI 88 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~-~~~~~~~~~L~~gd~V~V 88 (487)
|+|+|.||... ++|+.|+|+|||+++|.+|+++|++|||++|. +||++..+.. .++.++. |+.||+|.|
T Consensus 2 Rth~cgeL~~~------~~g~~V~v~GWv~~~R~~g~i~Fi~LRD~~G~--~Q~v~~~~~~~~~~~~~~--l~~Es~v~V 71 (106)
T d1c0aa1 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQV 71 (106)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred CceEcccCChH------HCCCEEEEEEEEEEeeeCCCcEEEEEEcCCeE--EeEEecccchhHHHHHHh--hCccceEEE
Confidence 78999999864 89999999999999999999999999999974 9999986653 3555677 999999999
Q ss_pred EeeEeecCCC-------CceEEEEEeEEEEEccCC
Q 011364 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 89 ~G~~~~~~~~-------~~~~el~~~~i~vls~~~ 116 (487)
+|+|.+++.+ ++++||++++++|||+|+
T Consensus 72 ~G~V~~r~~~~~n~~~~tg~iEi~v~~i~vl~~ad 106 (106)
T d1c0aa1 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106 (106)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EeEEeccCccccCCCCCCCcEEEEEeEEEEEeCCC
Confidence 9999987653 357999999999999984
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.81 E-value=2.5e-20 Score=162.79 Aligned_cols=112 Identities=19% Similarity=0.296 Sum_probs=94.8
Q ss_pred CCCCccccceeeccccCCCCCC----CCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCcc---chHhH
Q 011364 3 SKVGEFRKKLKIVDVKGGPNEG----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV 75 (487)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~~----~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~---~~~~~ 75 (487)
|++++|.++++++++.+.|+.. .+..+..|+|+|||+++|.+||++|++|+|.+| +||++++.+.. .|+.+
T Consensus 24 pYP~~~~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~Gk~~F~~i~D~~g--~iQi~~~~~~~~~~~~~~~ 101 (143)
T d1e1oa1 24 AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQ 101 (143)
T ss_dssp SSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHHT
T ss_pred CCCCCCcCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccCCeeEEEEEeCCc--eEEEEEccccchhhhHHHH
Confidence 7899999999999999876531 112367899999999999999999999999996 69999997642 35543
Q ss_pred -hccCCCCCcEEEEEeeEeecCCCCceEEEEEeEEEEEccCCCCCC
Q 011364 76 -KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (487)
Q Consensus 76 -~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~i~vls~~~~~~p 120 (487)
+. |+.||+|+|+|.+.+|+++ +++|.|+++++|+||..++|
T Consensus 102 ~k~--ld~GDiIgv~G~~~~TktG--Elsi~~~~~~lLsK~l~PLP 143 (143)
T d1e1oa1 102 FKK--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALRPLP 143 (143)
T ss_dssp GGG--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSSCCC
T ss_pred Hhc--CCcccEEEeecccEECCCC--cEEEEeeEEEEeccccCCCC
Confidence 55 9999999999999999876 89999999999999985544
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.7e-17 Score=143.51 Aligned_cols=99 Identities=17% Similarity=0.300 Sum_probs=82.1
Q ss_pred cceeeccccCCCCCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCCCCeeeEEEEeCCcc------chHhHhccCCCC
Q 011364 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE------GYDQVKSGLITT 82 (487)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g-~i~Fi~lrD~~~~~~lQvv~~~~~~------~~~~~~~~~L~~ 82 (487)
.+..+.|+... ++.|+.|+|+|||+++|.+| +++|++|||++| .+|+++..+.. .++.++. |+.
T Consensus 22 ~r~~i~dl~~~-----~~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg--~iQ~~v~~~~~~~~~~~~~~~~~~--l~~ 92 (134)
T d1eova1 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LNL 92 (134)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred EEEEeccccch-----hcCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCC--cEEEEEEeccccchhHHHHHHHhc--CCC
Confidence 44566676553 57899999999999999997 699999999996 59999997542 1344667 999
Q ss_pred CcEEEEEeeEeecCCC-----CceEEEEEeEEEEEccCCC
Q 011364 83 GASIWIQGNVVPSQGS-----KQKVELKVNKIVLVGKSDP 117 (487)
Q Consensus 83 gd~V~V~G~~~~~~~~-----~~~~el~~~~i~vls~~~~ 117 (487)
||+|.|+|+|.+++.. .+++||++++|+|||+|..
T Consensus 93 es~V~V~G~v~~~~~~~~~~~~~~~Ei~v~~i~vls~a~~ 132 (134)
T d1eova1 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132 (134)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCS
T ss_pred CCEEEEEEEEEeCCccCCCCCCCcEEEEEEEEEEEeCCCC
Confidence 9999999999998643 5789999999999999973
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=7e-17 Score=153.56 Aligned_cols=215 Identities=19% Similarity=0.214 Sum_probs=128.0
Q ss_pred HHHHHHHHHhhhcCCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCC---CccccccccCccccc
Q 011364 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG---LIDWSQDFFEKPAFL 228 (487)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L 228 (487)
+.+++.|+++|.+.||-|++.|.+.+. .+....++.+++|++++.-+.+--+.++ ...+..+ .....-|
T Consensus 20 ~~~~~~i~~if~~~GF~~~~gp~ies~-------~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~-~~~~~lL 91 (266)
T d1jjca_ 20 TLMERELVEIFRALGYQAVEGPEVESE-------FFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEE-VEGRLLL 91 (266)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEH-------HHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCE-ECSCEEE
T ss_pred HHHHHHHHHHHHHcCCeEeeCCccccc-------hhhhhcccCCcccchhcccceEEEecccccccCccccc-chhhhhh
Confidence 347888999999999999999988753 1222445555555544322211100000 0000000 1122345
Q ss_pred ccchhhhH-HHHhccCC--ceEEEecccccCCCCCCcccccccceeeEEcc--CCHHHHHHHHHHHHHHHHHHhhccCcc
Q 011364 229 TVSGQLNA-ETYATALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVVRYILDNCKE 303 (487)
Q Consensus 229 ~~Spql~l-~ll~~g~~--kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~~~~~~~~~~~~ 303 (487)
++-.--+. +.|..+.. |++.+|+|||+|.. +.+|.|+|+|+|.-... .++.+++..++.+++.++..
T Consensus 92 RTHTS~~q~r~~~~~~~p~~~~~~g~VyRrd~i-D~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~~f~~------- 163 (266)
T d1jjca_ 92 RTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGP------- 163 (266)
T ss_dssp CSSSTHHHHHHHHHSCSSEEEEEEEEEECCSCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHHCT-------
T ss_pred ccCCcHHHHHHHhccCCCceEEecccceecCCC-CCcccccceeeeeeeccccccHHHHHHHHHHHHHHhcCC-------
Confidence 54444444 55655553 78999999999998 79999999999976654 24555555554444443210
Q ss_pred ccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccchHHHhhhhhccccCccEEEEecCCc
Q 011364 304 DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 383 (487)
Q Consensus 304 ~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~~~~e~~l~e~~~~~~p~fi~~~P~~ 383 (487)
+. ... +.+.++
T Consensus 164 ------------------------------------------~~--~~R------------~~p~yF------------- 174 (266)
T d1jjca_ 164 ------------------------------------------DS--KVR------------FQPVYF------------- 174 (266)
T ss_dssp ------------------------------------------TC--CEE------------EEECCC-------------
T ss_pred ------------------------------------------Cc--EEE------------EecccC-------------
Confidence 00 001 112222
Q ss_pred CccccccccCCCCceEEEEEEec---CeeeeechhHhhchHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCc----c--c
Q 011364 384 IKAFYMRQNDDGRTVAAMDMLVP---RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPH----A--G 454 (487)
Q Consensus 384 ~~pf~~~~~~~~~~~~~fdl~~~---G~~El~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pP~----~--G 454 (487)
||+.+ +...|++++ ++=||+|+++-. .+.++..|++++ +.|.+|- . .
T Consensus 175 --PFTeP-------S~Ev~v~~~~~~~WlEilG~Gmv~------p~vL~~~gi~~~---------~~g~~~~~~~~~g~A 230 (266)
T d1jjca_ 175 --PFVEP-------GAQFAVWWPEGGKWLELGGAGMVH------PKVFQAVDAYRE---------RLGLPPAYRGVTGFA 230 (266)
T ss_dssp --TTEEE-------EEEEEEEEGGGTEEEEEEEEEEEC------HHHHHHHHHHHH---------TTTCCCCCTTCEEEE
T ss_pred --CCccC-------CcceEEEEeecCCcceEEeecccC------HHHHHhcCCchh---------hccCCccccCCeEEE
Confidence 78754 344666664 355999999877 445555444332 3466552 2 6
Q ss_pred eeccHHHHHHHHcCCCCcccc
Q 011364 455 FGLGFERLVQFATGVENIRDA 475 (487)
Q Consensus 455 ~giGidRL~m~l~g~~~Irdv 475 (487)
||||+|||+|++.|+++||+.
T Consensus 231 fGlGlERlAMl~~gI~DIR~f 251 (266)
T d1jjca_ 231 FGLGVERLAMLRYGIPDIRYF 251 (266)
T ss_dssp EEEEHHHHHHHHHTCSCGGGT
T ss_pred EeecHHHHHHHHcCCChHHHH
Confidence 799999999999999999973
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=98.71 E-value=6.8e-08 Score=94.05 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC------CCC----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 147 VARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~------~eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
-.+.+..+.+.+++.|...||.||.||++...+ +.+ ..+.|.+.+.+
T Consensus 14 ~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~~----------------------- 70 (318)
T d1z7ma1 14 QVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE----------------------- 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecCC-----------------------
Confidence 466777899999999999999999999996432 111 11234432221
Q ss_pred ccccccCccccccc--chhhhHHHHhc----cCCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 217 WSQDFFEKPAFLTV--SGQLNAETYAT----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 217 ~~~~~~~~~~~L~~--Spql~l~ll~~----g~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
|+.+.|+. .+++. |+.+. ...|+|++|+|||+|.. ..-+..||+|+.+|.-+.+
T Consensus 71 ------g~~l~LRpD~T~~ia-R~~~~~~~~~~~r~~Y~g~vfR~~~~-~~~r~rE~~Q~g~EiiG~~ 130 (318)
T d1z7ma1 71 ------GQSITLRYDFTLPLV-RLYSQIKDSTSARYSYFGKIFRKEKR-HKGRSTENYQIGIELFGES 130 (318)
T ss_dssp ------CCEEEECCCSHHHHH-HHHHTCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred ------ccEEEeeccccchHH-HHHHHhcccCCcccccccceeEEccc-cccccchhhhhheeccccc
Confidence 23333321 12332 33222 24589999999999976 3445679999999987765
|
| >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Asparagine synthetase species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=5.7e-07 Score=84.18 Aligned_cols=275 Identities=15% Similarity=0.101 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhhhc-----CCeEEEeCCeeeccCCCCCCCCceeeecCCCcccccCCCCCCCCCCCCCCccccc-cccCc
Q 011364 151 RNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ-DFFEK 224 (487)
Q Consensus 151 Rs~i~~~iR~ff~~-----~gF~EV~TP~L~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 224 (487)
....+..|+++|.. .+.++|..|+++....+-. +.+.-+.. |+ .++. +.-+.
T Consensus 5 tq~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlN-DnLnG~Er----------pV-----------~F~ik~~~~~ 62 (327)
T d12asa_ 5 KQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQ-DNLSGAEK----------AV-----------QVKVKALPDA 62 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCS-CCTTTTCC----------CC-----------EECCSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCcEEecCCeEEcCCCCcc-cCCCCeee----------ee-----------EEecCCCCCC
Confidence 44566777777754 6999999999998654211 11110000 00 0000 01133
Q ss_pred ccccccchhhhHHHHhc--cCC---ceEEEeccccc-CCCCCCcccccccceeeEEccCCHHHHHHHHHHHHHHHHHHhh
Q 011364 225 PAFLTVSGQLNAETYAT--ALS---NVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 298 (487)
Q Consensus 225 ~~~L~~Spql~l~ll~~--g~~---kvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~~~ 298 (487)
.+-..+|---|||+... +|. .+|+=..+.|. |+.-+..|.-=.-|-|||.....-+.-++...+.++.+++.+.
T Consensus 63 ~~EiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~DEd~ldn~HSiyVDQWDWEkvI~~~dR~l~~Lk~tV~~Iy~~ik 142 (327)
T d12asa_ 63 QFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIK 142 (327)
T ss_dssp CEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHH
T ss_pred eeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCcccCCCceeEEEcccchhhhcCccccCHHHHHHHHHHHHHHHH
Confidence 33455666667775443 554 59998888887 5533799999999999999876544445555556665555553
Q ss_pred ccCccccccccccccchhhhhhhhhhcCCCcccCHHHHHHHHHHhccccccccccccccc-hHHHhhhhhccccCccEEE
Q 011364 299 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPVIV 377 (487)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~~~~l~-~~~e~~l~e~~~~~~p~fi 377 (487)
.....-...++ +...+...+.=+|-+|..+.+ + +++ .+.|..++..+ +.|||
T Consensus 143 ~te~~v~~~y~----------~~~~Lp~~I~FitsqeL~~~Y-------P-------~Lt~keRE~~i~ke~---gAVFi 195 (327)
T d12asa_ 143 ATEAAVSEEFG----------LAPFLPDQIHFVHSQELLSRY-------P-------DLDAKGRERAIAKDL---GAVFL 195 (327)
T ss_dssp HHHHHHHHHSC----------CCCCSCSSCEEEEHHHHHHHS-------S-------SSCHHHHHHHHHHHH---SEEEE
T ss_pred HHHHHHHHhCC----------cccCCCCceEEEehHHHHHHC-------C-------CCChHHHHHHHHHHh---CcEEE
Confidence 22100000000 001111111123333332221 0 122 23444455444 35676
Q ss_pred EecCCcCc---cccccccCCCCce---------EEEEEEec------CeeeeechhHhhchHHHHHHHHHHcCCCcc-cH
Q 011364 378 SDYPKEIK---AFYMRQNDDGRTV---------AAMDMLVP------RIGELIGGSQREERLEYLEGRLDELKLNRD-SY 438 (487)
Q Consensus 378 ~~~P~~~~---pf~~~~~~~~~~~---------~~fdl~~~------G~~El~~G~~r~~~~~~~~~~~~~~g~~~~-~~ 438 (487)
+.--..++ |--.+.++-+.+. .+=|+++- .+ ||.+-+.|... +.+.++++..|-+.. .+
T Consensus 196 ~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDIlvw~~vl~~a~-ElSSMGIRVd~-~~L~~QL~~~~~~~r~~l 273 (327)
T d12asa_ 196 VGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAF-ELSSMGIRVDA-DTLKHQLALTGDEDRLEL 273 (327)
T ss_dssp ECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEE-EEEEEEEBCCH-HHHHHHHHHHTCTTGGGS
T ss_pred EecCCcCCCCCcCCCCCCCCCcccCcccccccCccceEEEechhcCcee-eeecceeEECH-HHHHHHHHHcCChhhhcC
Confidence 65333221 1111111111122 46666653 47 99999999955 888888887665432 23
Q ss_pred HHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCcccccc
Q 011364 439 WWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 477 (487)
Q Consensus 439 ~~yl~~~~~G-~pP~~G~giGidRL~m~l~g~~~Irdv~~ 477 (487)
. |-.++-.| +|-+-|.|||=.||||+|++..+|-+|++
T Consensus 274 ~-~Hk~ll~~~LP~TIGGGIGQSRlcM~lL~KaHIGEVQa 312 (327)
T d12asa_ 274 E-WHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQA 312 (327)
T ss_dssp H-HHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSC
T ss_pred H-HHHHHHcCCCCccccccccHHHHHHHHHccCcccceee
Confidence 3 56665556 99999999999999999999999999976
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=4.7e-07 Score=88.08 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CCC----CCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.+.|..+.+.+++.|...||.+|.||++...+. +.. ...+...+
T Consensus 14 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d------------------------ 69 (322)
T d1kmma2 14 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED------------------------ 69 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEEC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhh------------------------
Confidence 34567788999999999999999999999976431 100 11121111
Q ss_pred cccccccCcccccccc--hhhhHHHHhcc------CCceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 216 DWSQDFFEKPAFLTVS--GQLNAETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~S--pql~l~ll~~g------~~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
.-|+.+-|+.- ++.. +.++.. --|+|++|+|||.+..... ..-||+|+.+|.-+.+
T Consensus 70 -----~~g~~l~Lr~D~T~~ia-R~~~~~~~~~~~p~r~~y~g~v~r~~~~~~g-r~re~~Q~g~EiiG~~ 133 (322)
T d1kmma2 70 -----RNGDSLTLRPEGTAGCV-RAGIEHGLLYNQEQRLWYIGPMFRHERPQKG-RYRQFHQLGCEVFGLQ 133 (322)
T ss_dssp -----TTSCEEEECSCSHHHHH-HHHHHTTCSTTCCEEEEEEEEEECCCCCBTT-BCSEEEEEEEEEESCC
T ss_pred -----cccccccccccccchhh-HHHHhhhhhhhhhhhHhhcccccccCCCCCC-ccchhhhhhHHHhccc
Confidence 11333333322 2222 333221 2378999999999977433 4479999999987764
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.41 E-value=3.1e-07 Score=89.46 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CC----CCCCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
.-.+.|..+.+.+++.|...||.+|.||++...+. +. ..+.|...+.
T Consensus 14 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~----------------------- 70 (325)
T d1qe0a2 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK----------------------- 70 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhcc-----------------------
Confidence 34677899999999999999999999999976431 00 0112221111
Q ss_pred cccccccCcccccccchhhhH-HHH-hcc----C---CceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETY-ATA----L---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll-~~g----~---~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
-+....|+.....-. +.+ ... . -|+|++|+|||.+.....| .-||+|+.+|.-+.+
T Consensus 71 ------~~~~~~lr~d~t~~~~r~~~~~~~~~~~~~p~R~~Y~g~VfR~~~~~~~~-~rE~~Q~G~EiiG~~ 135 (325)
T d1qe0a2 71 ------GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGR-YRQFNQFGVEAIGAE 135 (325)
T ss_dssp ------HHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred ------ccccccccccccccHHHHHHhhccccccccchhhheecceeeeccccCCc-cceeeecceeecCCc
Confidence 122223333222222 222 111 1 2899999999999774444 479999999998764
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.35 E-value=5e-06 Score=80.64 Aligned_cols=105 Identities=19% Similarity=0.310 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC----CCC------CCCceeeecCCCcccccCCCCCCCCCCCCC
Q 011364 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EGA------GEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (487)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----eg~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (487)
+-.-.+.|..+.+.+++.|...||.||.||++...+. .|. ...|.+.+.
T Consensus 12 ~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~--------------------- 70 (324)
T d1h4vb2 12 FGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR--------------------- 70 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECT---------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhcc---------------------
Confidence 3456778889999999999999999999999976431 011 112222111
Q ss_pred CccccccccCcccccccc--hhhhHHHHhcc---CC---ceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 214 LIDWSQDFFEKPAFLTVS--GQLNAETYATA---LS---NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 214 ~~~~~~~~~~~~~~L~~S--pql~l~ll~~g---~~---kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
-|+...|+.- ++....+.... .. |.|++|+|||.+... .-..-||+|+.+|.-+.+
T Consensus 71 --------~g~~l~LRpD~T~~iar~~~~~~~~~~~~p~r~~Y~g~VfR~~~~~-~gr~re~~Q~g~EiiG~~ 134 (324)
T d1h4vb2 71 --------GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSE 134 (324)
T ss_dssp --------TSCEEEECCCSHHHHHHHHHHTTGGGSSSSEEEEEEEEEECCCCC-----CCEEEEEEEEEESCC
T ss_pred --------CCcccccccccccHHHHHHHHhhhhhhchhhhheeeCcccccCccc-CCCcceeccccccccCCC
Confidence 1333333321 22222233232 22 899999999999773 445589999999987764
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.96 E-value=7.5e-06 Score=78.29 Aligned_cols=118 Identities=12% Similarity=0.090 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC-CC-------CCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GA-------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e-g~-------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
.-.+++.+|.+.+|+.+.+.||.||.||.|.+.... +. .+.|.++...
T Consensus 28 ~G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~------------------------ 83 (291)
T d1nyra4 28 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLD------------------------ 83 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEET------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEeecc------------------------
Confidence 346788899999999999999999999999996431 11 1122111000
Q ss_pred cccccCcccccccchhhhHHHHhcc-------CC-ceEEEecccccCCCCCCc----ccccccceeeEEccCCHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNAETYATA-------LS-NVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMAC 285 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l~ll~~g-------~~-kvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm~~ 285 (487)
-+.+.+|....+-..-++... +. |+||+++|||+|.+ +.. =.-||+|.|.+. |++.++..+.
T Consensus 84 ----~~~~~~L~pt~e~~~~~~~~~~~~sy~dLPlr~~~~~~~fR~E~~-~~~~Gl~Rvr~F~~~d~~~-f~~~eq~~~e 157 (291)
T d1nyra4 84 ----ETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS-GAVSGLQRVRGMTLNDSHI-FVRPDQIKEE 157 (291)
T ss_dssp ----TTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT-TTCBTTTBCSEEEEEEEEE-EECGGGHHHH
T ss_pred ----ccccccccccchhHHHHhhhcEeccccccceEEeeccceeecCCC-cccccccceeeeeeeehee-ecCCcccHHH
Confidence 034567877787776433222 22 89999999999975 222 235999999986 5666666666
Q ss_pred HHHHHHHH
Q 011364 286 ATAYLQYV 293 (487)
Q Consensus 286 ~e~li~~~ 293 (487)
+++++..+
T Consensus 158 ~~~~~~~~ 165 (291)
T d1nyra4 158 FKRVVNMI 165 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=1.9e-05 Score=75.34 Aligned_cols=118 Identities=12% Similarity=0.124 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCCC---C-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
.-.+++.+|.+.+|+.+.+.||.||.||.|.+..-- | ..+.|.++.
T Consensus 28 ~G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~-------------------------- 81 (291)
T d1qf6a4 28 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS-------------------------- 81 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEE--------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhccccc--------------------------
Confidence 356778899999999999999999999999985320 1 001221110
Q ss_pred cccccCcccccccchhhhH-HHHhcc------C-CceEEEecccccCCC---CCCcccccccceeeEEccCCHHHHHHHH
Q 011364 218 SQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS---NTSRHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 218 ~~~~~~~~~~L~~Spql~l-~ll~~g------~-~kvfeI~~~FR~E~~---~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
-+.+.+|....+-.. .+...- + -|+||+++|||+|.. .+-.=.-||+|-|.+. |..-++.++.+
T Consensus 82 ----~~~~~~L~Pt~e~~~~~~~~~~~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~~e~~~~e~ 156 (291)
T d1qf6a4 82 ----ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEV 156 (291)
T ss_dssp ----TTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHH
T ss_pred ----cchhhcccccCcHHHHHHHHccccchhhcCeeEeecceeeecccccccccccccccceecccee-EecchhhHHHH
Confidence 034456777777665 443322 2 289999999999953 1222456999999998 67667777777
Q ss_pred HHHHHHHH
Q 011364 287 TAYLQYVV 294 (487)
Q Consensus 287 e~li~~~~ 294 (487)
+++++.+.
T Consensus 157 ~~~~~~~~ 164 (291)
T d1qf6a4 157 NGCIRLVY 164 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765544
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.65 E-value=0.00015 Score=67.92 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCC--------CCceeeecCCCcccccCCCCCCCCCCCCCCc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG--------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~--------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (487)
-.-.+++.+|.+.+++.+.+.||.||.||+|..... ...+ +.|.+.....
T Consensus 37 P~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~--------------------- 95 (272)
T d1hc7a2 37 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGG--------------------- 95 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESS---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeecccc---------------------
Confidence 446788999999999999999999999999887543 2221 1222211110
Q ss_pred cccccccCcccccccchhhhH-HHHhcc------CC-ceEEEecccccCCCCCC-cccccccceeeEEccCCHHHHHHHH
Q 011364 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------LS-NVYTFGPTFRAENSNTS-RHLAEFWMIEPELAFADLKDDMACA 286 (487)
Q Consensus 216 ~~~~~~~~~~~~L~~Spql~l-~ll~~g------~~-kvfeI~~~FR~E~~~t~-rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (487)
+--+.+.+|..+.+-.. .+.... +. |+||+++|||+|..... .=.-+|+|.+.+....+..+.....
T Consensus 96 ----~~~~~~~~L~pt~e~~~~~~~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~~~~~~~~ 171 (272)
T d1hc7a2 96 ----EELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEV 171 (272)
T ss_dssp ----SEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHH
T ss_pred ----ccccchhhcccccccceeehhhceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcccccchhHH
Confidence 01123456777776555 332222 22 89999999999964211 1124789999998777877777666
Q ss_pred HHHHHHH
Q 011364 287 TAYLQYV 293 (487)
Q Consensus 287 e~li~~~ 293 (487)
++.+...
T Consensus 172 ~~~~~~~ 178 (272)
T d1hc7a2 172 RRMLSIY 178 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.54 E-value=0.00017 Score=69.58 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC------CC-CCCCceeeecCCCcccccCCCCCCCCCCCCCCccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (487)
-+-.+.+..+...+++.|.+.||.+|.||++...+. +. ..+.|.+++.+
T Consensus 15 p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~------------------------ 70 (327)
T d1wu7a2 15 PEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKG------------------------ 70 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhccc------------------------
Confidence 446677889999999999999999999999866431 11 22345443322
Q ss_pred cccccCccccccc--chhhhHHHHhc--c--C-CceEEEecccccCCCCCCcccccccceeeEEccCC
Q 011364 218 SQDFFEKPAFLTV--SGQLNAETYAT--A--L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (487)
Q Consensus 218 ~~~~~~~~~~L~~--Spql~l~ll~~--g--~-~kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (487)
|+.+.|+. .|+.. ++++. . . -|+|++++|||.+.. ..-+.-||+|+.+|.-+.+
T Consensus 71 -----g~~l~LRpD~T~~ia-r~~~~~~~~~~p~k~~y~g~VfR~~~~-~~g~~re~~Q~G~EiiG~~ 131 (327)
T d1wu7a2 71 -----GREVTLIPEATPSTV-RMVTSRKDLQRPLRWYSFPKVWRYEEP-QAGRYREHYQFNADIFGSD 131 (327)
T ss_dssp -----SCEEEECSCSHHHHH-HHHTTCTTCCSSEEEEECCEEECCCCS-CSSCCSEEEEEEEEEESCC
T ss_pred -----chhhcccccccchhh-hHhhhhhhccccceeeccCcceecccc-ccCCcchhhhhhhhhcCCc
Confidence 22222221 12222 22222 1 2 389999999999977 4455679999999998765
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.47 E-value=0.00015 Score=70.31 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhh--hcCCeEEEeCCeeeccCC---CCCCCCceeeecCCCcccccCCCCCC---CCCCCCCCccc
Q 011364 146 AVARVRNALAYATHKFF--QENGFIWISSPIITASDC---EGAGEQFCVTTLIPSSREAAESPVDA---IPKTKDGLIDW 217 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff--~~~gF~EV~TP~L~~~~~---eg~~~~F~vt~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 217 (487)
.-.++|.+|.+.+|+.| .+.|+.||.||+|++..- .|--+.|. ...-........+.... ...+.-+..
T Consensus 37 ~G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~-d~m~~~~~~~~~~~~~~~~~~~~~~~~~~-- 113 (331)
T d1b76a2 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFA-DPMVDNAKARYWTPPRYFNMMFQDLRGPR-- 113 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCE-EEECBSSSCBCCCCCEEEECCEEEECSSS--
T ss_pred cHHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccC-CceeeecccccccCccchhhccccccccc--
Confidence 35778899999999987 478999999999998532 01101111 00000000000000000 000000000
Q ss_pred cccccCcccccc--cchhhhH---HHHh-c--cCC-ceEEEecccccCCCCCCcc---cccccceeeEEccCCHHHHHHH
Q 011364 218 SQDFFEKPAFLT--VSGQLNA---ETYA-T--ALS-NVYTFGPTFRAENSNTSRH---LAEFWMIEPELAFADLKDDMAC 285 (487)
Q Consensus 218 ~~~~~~~~~~L~--~Spql~l---~ll~-~--g~~-kvfeI~~~FR~E~~~t~rH---l~EFtmlE~e~~~~~~~~lm~~ 285 (487)
..-+...||+ +++..+. +... + .+. +++|||+|||||-+ .... .=||||.|+|. |++-++..+.
T Consensus 114 --~~~~~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s-~~~gl~RvReFtq~D~~~-F~~~~q~~~~ 189 (331)
T d1b76a2 114 --GGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-PRNFIFRVREFEQMEIEY-FVRPGEDEYW 189 (331)
T ss_dssp --CCGGGEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSS-CCTTTTSCSEEEEEEEEE-EECGGGHHHH
T ss_pred --cccCCcccccCcchhhHHHHHHhHHhccccccchhhhhccceeccccc-ccccccccchhhhhhhhh-hcCCcchhHH
Confidence 0002233443 3333332 2222 2 233 79999999999965 3322 24999999987 7787777777
Q ss_pred HHHHHHHHHHHhhc
Q 011364 286 ATAYLQYVVRYILD 299 (487)
Q Consensus 286 ~e~li~~~~~~~~~ 299 (487)
....+..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~ 203 (331)
T d1b76a2 190 HRYWVEERLKWWQE 203 (331)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666543
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=97.30 E-value=0.00073 Score=63.22 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC----CC-----CCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
.-.+++.+|.+.+|+.+.+.||.||.||+|.+..- .+ ..+.|.++....
T Consensus 33 ~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~---------------------- 90 (268)
T d1nj8a3 33 YGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGK---------------------- 90 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSS----------------------
T ss_pred cHHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEecccc----------------------
Confidence 35678899999999999999999999999876321 01 112232221110
Q ss_pred ccccccCcccccccchhhhH-HHHhccC-------CceEEEecccccCCCCCCc---cccccccee-eEEccCCHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSNTSR---HLAEFWMIE-PELAFADLKDDMA 284 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~~g~-------~kvfeI~~~FR~E~~~t~r---Hl~EFtmlE-~e~~~~~~~~lm~ 284 (487)
+=-+.+.+|....+-.. .+..... =|+||+++|||+|.. ..+ =.-||+++| .+....+-++..+
T Consensus 91 ---~~~~~~~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~-~~~GllR~reF~~~dd~~~~~~~~~~~~~ 166 (268)
T d1nj8a3 91 ---TQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK-HTRPLIRLREIMTFKEAHTAHSTKEEAEN 166 (268)
T ss_dssp ---SEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS-CCBTTTBCSBCSCEEEEEEEESSHHHHHH
T ss_pred ---ccchhhhhcccCCCchhHHhhhhhccchhhhheEEeecccccccccc-ccccceeEEEEeeechhceeccccchhhH
Confidence 00023356776666655 4443321 289999999999943 221 245898665 5665667776666
Q ss_pred HHHHHHH
Q 011364 285 CATAYLQ 291 (487)
Q Consensus 285 ~~e~li~ 291 (487)
..+.++.
T Consensus 167 ~~~~~~~ 173 (268)
T d1nj8a3 167 QVKEAIS 173 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=96.82 E-value=0.0048 Score=58.65 Aligned_cols=119 Identities=20% Similarity=0.298 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccCC-CCCCCC--ceeeecCCCcccccCCCCCCCCCCCCCCccccccc
Q 011364 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQ--FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (487)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~~-eg~~~~--F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (487)
-...++.-.+++.+.+++.++||.||.+|.|..... +|++.. |. .+.
T Consensus 53 g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~------------------------------~~~ 102 (311)
T d1seta2 53 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYR------------------------------DQV 102 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTG------------------------------GGS
T ss_pred CHHHHHHHHHHHHHHHhhhcccceEEeechhhccchhhhcccccccc------------------------------ccc
Confidence 456677788999999999999999999999998643 222211 10 011
Q ss_pred c---CcccccccchhhhHH-HHhc------cCC-ceEEEecccccCCCC------CCcccccccceeeEEc-cCCHHHHH
Q 011364 222 F---EKPAFLTVSGQLNAE-TYAT------ALS-NVYTFGPTFRAENSN------TSRHLAEFWMIEPELA-FADLKDDM 283 (487)
Q Consensus 222 ~---~~~~~L~~Spql~l~-ll~~------g~~-kvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~-~~~~~~lm 283 (487)
| +.+.||.-..|..+= +... .+. |+++.++|||.|... +--...+|+.+|.... ..+.++..
T Consensus 103 y~~~~~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~ 182 (311)
T d1seta2 103 WAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASD 182 (311)
T ss_dssp CBBTTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHH
T ss_pred ccccccceeecccccchhhhhhhhhhhhhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccch
Confidence 1 345678766776653 2211 122 799999999999532 2224569999997654 33677777
Q ss_pred HHHHHHHHHH
Q 011364 284 ACATAYLQYV 293 (487)
Q Consensus 284 ~~~e~li~~~ 293 (487)
+..++++...
T Consensus 183 ~~~~~~~~~~ 192 (311)
T d1seta2 183 RAFQELLENA 192 (311)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 7777777654
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=96.82 E-value=0.0019 Score=60.09 Aligned_cols=119 Identities=14% Similarity=0.121 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeCCeeeccC-CC--------CCCCCceeeecCCCcccccCCCCCCCCCCCCCCcc
Q 011364 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD-CE--------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (487)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~gF~EV~TP~L~~~~-~e--------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (487)
.=.+++.+|.+.+|+.+ ++||.||.||.|.+.. .. -..+.|.++....
T Consensus 31 ~G~~i~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~---------------------- 87 (265)
T d1nj1a3 31 HGFMIRKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGL---------------------- 87 (265)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETT----------------------
T ss_pred cHHHHHHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeeccCc----------------------
Confidence 34577888999999876 5699999999886532 11 1124454432110
Q ss_pred ccccccCcccccccchhhhH-HHHhcc------CC-ceEEEecccccCCCCCCc---cccccccee-eEEccCCHHHHHH
Q 011364 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------LS-NVYTFGPTFRAENSNTSR---HLAEFWMIE-PELAFADLKDDMA 284 (487)
Q Consensus 217 ~~~~~~~~~~~L~~Spql~l-~ll~~g------~~-kvfeI~~~FR~E~~~t~r---Hl~EFtmlE-~e~~~~~~~~lm~ 284 (487)
+=-+.+.+|+...+-+. .++... +. |+||+++|||+|.. ..+ =.-|||++| .+....+-++...
T Consensus 88 ---~~~~~~~~L~pt~~~~~~~~~~~~~~SyrdLPlr~~q~~~~fR~E~~-~~~Gl~R~reF~~~~d~~~~~~~~~~~~~ 163 (265)
T d1nj1a3 88 ---SKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETK-HTRPLIRVREITTFKEAHTIHATASEAEE 163 (265)
T ss_dssp ---EEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCS-CCBTTTBCSEEEEEEEEEEEESSHHHHHH
T ss_pred ---cccceeEEeecccccceEEeeeeeeccccccceEEEeeccceeeecc-cCcCCEEEEEEEEeccceeecCCHHHHHH
Confidence 00024456777777665 443332 22 79999999999943 221 245998665 5555567666655
Q ss_pred HHHHHHH
Q 011364 285 CATAYLQ 291 (487)
Q Consensus 285 ~~e~li~ 291 (487)
..+.++.
T Consensus 164 e~~~~~~ 170 (265)
T d1nj1a3 164 QVERAVE 170 (265)
T ss_dssp HHHHHHH
T ss_pred HhhhhHH
Confidence 4444443
|
| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 32 KDa subunit (RPA32) fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.018 Score=47.11 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=54.8
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEEeE
Q 011364 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (487)
Q Consensus 30 ~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~~~ 108 (487)
..|++.|+|.++....+.+-..|.|++|. .+.|....+... ...... +..|++|.|.|.++.-.. ...|.+..
T Consensus 29 ~~V~iVG~V~~i~~~~t~~~y~idDgTG~-~i~v~~w~~~~~~~~~~~~--i~~g~yVrV~G~lk~f~~---~~~i~~~~ 102 (128)
T d2pi2a1 29 SQVTIVGIIRHAEKAPTNIVYKIDDMTAA-PMDVRQWVDTDDTSSENTV--VPPETYVKVAGHLRSFQN---KKSLVAFK 102 (128)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEECSSSS-CEEEEEECC-------CCC--CCTTCEEEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEEEEEecCCEEEEEEECCCCC-cEEEEEECCCCCCcccccc--ccCCCEEEEEEEEEeeCC---eEEEEEEE
Confidence 56999999999998866666689999972 588877754321 112234 999999999999986532 35677777
Q ss_pred EEEEc
Q 011364 109 IVLVG 113 (487)
Q Consensus 109 i~vls 113 (487)
+..+.
T Consensus 103 i~~v~ 107 (128)
T d2pi2a1 103 IMPLE 107 (128)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 66443
|
| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Hypothetical protein YgiW family: Hypothetical protein YgiW domain: Hypothetical protein YgiW species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.024 Score=44.60 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=58.4
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEee
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (487)
.++++++.. ..+..|++.|.|.+.-..-+. .++|++| .|+|-++.+. |.- .. +++++-|.+.|.
T Consensus 25 ~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d~Y---~F~D~TG--~I~VeId~~~--w~g-~~--v~p~~kV~i~Ge 88 (106)
T d1nnxa_ 25 TTVESAKSL------RDDTWVTLRGNIVERISDDLY---VFKDASG--TINVDIDHKR--WNG-VT--VTPKDTVEIQGE 88 (106)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETTEE---EEEETTE--EEEEECCGGG--STT-CC--CCTTSCEEEEEE
T ss_pred EhHHHHhhC------cCCCeEEEEEEEEEEeCCceE---EEECCCC--cEEEEEChhh--cCC-cc--cCCCCEEEEEEE
Confidence 455565543 456789999999877655433 3699996 4888776532 211 13 999999999999
Q ss_pred EeecCCCCceEEEEEeEEEEE
Q 011364 92 VVPSQGSKQKVELKVNKIVLV 112 (487)
Q Consensus 92 ~~~~~~~~~~~el~~~~i~vl 112 (487)
+-+.- + ..||.|+.|++|
T Consensus 89 vDk~~-~--~~eIdV~~I~~l 106 (106)
T d1nnxa_ 89 VDKDW-N--SVEIDVKQIRKV 106 (106)
T ss_dssp EEEET-T--EEEEEEEEEEEC
T ss_pred EcCCC-C--ceEEEEEEEEEC
Confidence 99763 2 479999999875
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=94.96 E-value=0.03 Score=51.89 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=31.6
Q ss_pred ceEEEecccccCCCCCCcccccccceeeEEccCC-H---HHHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQYV 293 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~lm~~~e~li~~~ 293 (487)
|+|.+|+|||.++. +.-||+|+-+|.-+.+ . -|++.++-+.++.+
T Consensus 72 k~~Y~g~VfR~~~~----~~re~~Q~G~EiiG~~~~~aD~Evi~l~~~~l~~l 120 (275)
T d1usya_ 72 KVWYADFVYRYSGS----DLVAEYQLGLEKVPRNSLDDSLEVLEIIVESASEF 120 (275)
T ss_dssp EEECCEEEEEEETT----EEEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEeeEEEeCCC----cccceeecCceeechhhHHHHHHHHHHHHHHHHhh
Confidence 89999999998754 2469999999886643 2 34555555555443
|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Archaeal ssDNA-binding protein species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.88 E-value=0.05 Score=43.45 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=58.5
Q ss_pred eeccccCCCCCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCC
Q 011364 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (487)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~V~v~GwV~~i---R~------~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~g 83 (487)
+|+||... ...|.|.|+|.++ |. .|++..+.|.|.+| ++.+++.... ... |..|
T Consensus 4 kI~dL~pg--------~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG--~i~~~~W~~~-----~~~--l~~G 66 (115)
T d1o7ia_ 4 KVGNLKPN--------MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--RVKLTLWGKH-----AGS--IKEG 66 (115)
T ss_dssp CGGGCCTT--------CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--EEEEEEEGGG-----TTC--CCTT
T ss_pred cHHHCCCC--------CCCEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCCC--eEEEEEeccc-----ccc--CCCC
Confidence 56777653 2448999999987 33 24678888999996 5999888532 234 9999
Q ss_pred cEEEEEeeEeecCCCCceEEEEEeEEEEEccC
Q 011364 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (487)
Q Consensus 84 d~V~V~G~~~~~~~~~~~~el~~~~i~vls~~ 115 (487)
|+|.++|--.+... +.+||.+.+-..+.++
T Consensus 67 dvv~i~na~v~~~~--g~~el~~~~~s~i~~~ 96 (115)
T d1o7ia_ 67 QVVKIENAWTTAFK--GQVQLNAGSKTKIAEA 96 (115)
T ss_dssp CEEEEEEEEEEEET--TEEEEEECTTCEEEEC
T ss_pred CEEEEeeEEEEEEC--CeEEEEECCCeEEEEC
Confidence 99999875554433 3689998754444443
|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=0.037 Score=44.29 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=62.1
Q ss_pred eeeccccCCCCCCCCCCCCEEEEEEEEeee---e---c---CCCeEEEEEEcCCCCeeeEEEEeCCccc-hHhHhccCCC
Q 011364 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R---A---QSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLIT 81 (487)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~V~v~GwV~~i---R---~---~g~i~Fi~lrD~~~~~~lQvv~~~~~~~-~~~~~~~~L~ 81 (487)
+.|++|... ...++|.|||.++ | . .|++.-++|.|.+| .|++++..+..+ | -.. |+
T Consensus 3 ~PI~~L~p~--------~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G--~I~~t~~~~~~~~f--~~~--l~ 68 (116)
T d1jmca1 3 VPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVDKF--FPL--IE 68 (116)
T ss_dssp CCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHHHH--GGG--CC
T ss_pred EeHHHcCCC--------CCCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCC--CEEEEEchhhhhhh--Hhh--cc
Confidence 457777653 2457899999754 2 2 25677888999997 499999865321 2 124 99
Q ss_pred CCcEEEEEee-EeecCC----CCceEEEEEeEEEEEccCC
Q 011364 82 TGASIWIQGN-VVPSQG----SKQKVELKVNKIVLVGKSD 116 (487)
Q Consensus 82 ~gd~V~V~G~-~~~~~~----~~~~~el~~~~i~vls~~~ 116 (487)
.|++..++|- |..... ..+.+||....-+.+.+|+
T Consensus 69 ~G~vy~i~~~~V~~~~~~y~~~~~~yei~f~~~T~I~~~~ 108 (116)
T d1jmca1 69 VNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 108 (116)
T ss_dssp TTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred cCCEEEEcceEEEEccCcEeccCCcEEEEECCCcEEEECC
Confidence 9999999985 433322 2346899988777777764
|
| >d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 14 KDa (RPA14) subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.22 Score=39.59 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=49.5
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecCCCCceEEEEE
Q 011364 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~~g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~~~~~~~el~~ 106 (487)
+.|+.|++-|+|.+++..|+.. .+++..+ ..++|.+.... . ...+.+|.|.|++.. +..|.+
T Consensus 18 ~~Gk~V~ivGkV~~v~~~g~~~--~~~s~D~-~~V~v~l~~~~-------~--~~~~~~vEViG~V~~------~~sI~~ 79 (115)
T d2pi2e1 18 FIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATILC 79 (115)
T ss_dssp STTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEE--EEEcCCC-CEEEEEeCCCC-------C--CccCCeEEEEEEECC------CCcEEE
Confidence 7899999999999999887543 4665544 34666555431 2 677889999999943 245677
Q ss_pred eEEEEEcc
Q 011364 107 NKIVLVGK 114 (487)
Q Consensus 107 ~~i~vls~ 114 (487)
..+.-++.
T Consensus 80 ~~~~~fg~ 87 (115)
T d2pi2e1 80 TSYVQFKE 87 (115)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 77665553
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=88.27 E-value=0.18 Score=48.59 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=26.7
Q ss_pred ceEEEecccccCCCCCCcc----cccccceeeEEccCCHHHH
Q 011364 245 NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (487)
Q Consensus 245 kvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (487)
-|.|||+|||||= ++|+ .-||||+|+|. |++-.+-
T Consensus 211 GiAQIGk~FRNEI--sPr~~l~R~REF~q~EiE~-Fv~P~~~ 249 (394)
T d1atia2 211 GIAQIGKAFRNEI--TPRNFIFRVREFEQMEIEY-FVRPGED 249 (394)
T ss_dssp EEEEEEEEEBCCS--SCCTGGGSCSEEEEEEEEE-EECGGGH
T ss_pred eeeeecccccccc--CcccCCcccccceeeeeEE-EEeCCcc
Confidence 4899999999993 4443 47999999997 6665443
|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RecG "wedge" domain domain: RecG "wedge" domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.56 E-value=0.58 Score=39.71 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=43.3
Q ss_pred CCCCEEEEEEEEeeeec--C--CCeEEEEEEcCCCCeeeEEEEeCCccchHhHhccCCCCCcEEEEEeeEeecC
Q 011364 27 RVGLMIVVAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (487)
Q Consensus 27 ~~~~~V~v~GwV~~iR~--~--g~i~Fi~lrD~~~~~~lQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~~~~~~ 96 (487)
..|+.|+|.|.|.+.+. . .++.-+.+.|++| .|.++.-...-....+ . ..+|+.|.|+|++..+.
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~~~~~v~D~~g--~i~l~fFn~~~~~~~~-k--~~~G~~v~v~Gkvk~~~ 126 (180)
T d1gm5a2 58 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLV--HVPLKWFNQDYLQTYL-K--QLTGKEVFVTGTVKSNA 126 (180)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSC--CEEEEECSCCTTHHHH-H--TTCSSCEEEEEEECSCC
T ss_pred CcceeeeeeeEEEeeccccccccceeEEEEEeccc--eEEEEEeCcHHHHHHH-h--hhcCceEEEEEEEeecc
Confidence 34678999999987643 2 2444577889986 4888766532111112 2 45799999999997653
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=84.86 E-value=0.58 Score=40.77 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=22.2
Q ss_pred HHHHHHHhhhcCCeEEEeCCeeeccC
Q 011364 154 LAYATHKFFQENGFIWISSPIITASD 179 (487)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TP~L~~~~ 179 (487)
..+.+|++|...||.||-|-.+++..
T Consensus 20 ~~~~ir~~L~~~Gf~Ev~tysf~s~~ 45 (207)
T d1jjcb5 20 KEQRLREVLSGLGFQEVYTYSFMDPE 45 (207)
T ss_dssp HHHHHHHHHHHHTCEECCCCSEECTT
T ss_pred HHHHHHHHHHHCCcchhcCCCcCCHH
Confidence 45678999999999999999998743
|
| >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.99 E-value=0.59 Score=43.09 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=34.2
Q ss_pred ceEEEecccccCCCC-CCcc----cccccceeeEEccCCHHHHHHHHHHHHHHHHH
Q 011364 245 NVYTFGPTFRAENSN-TSRH----LAEFWMIEPELAFADLKDDMACATAYLQYVVR 295 (487)
Q Consensus 245 kvfeI~~~FR~E~~~-t~rH----l~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~ 295 (487)
++-|||+|||+|... ++++ .-||||+|++. |++-++..+..+.++.....
T Consensus 141 ~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~-F~~pe~~~~~~~~~~~~~~~ 195 (290)
T d1g5ha2 141 GLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHRLL 195 (290)
T ss_dssp EEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccccccCCcccccceeeEeEeeeeEE-EeCCcchHHHHHHHHHHHHH
Confidence 799999999966321 1221 24999999987 78888877776666665543
|