Citrus Sinensis ID: 011375

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
MDAPLAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLKDSRKFRKKHL
ccccccccccccccccEEEEEcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEccccccccccccccccccccHHHHHHccccccccHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccEEEEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccEEEEEccccccEEEEEcccHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHcccEEEEccHHHHHHcc
ccccccccccccccccEEEEHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHHccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccEEccHHHHHHccccHEEEEcccHcHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEHHHHcccccEEEEEcccccEccccHHHHHHHHHHHHHHHHHHHcccEEEEEHHHccHHHHccccEEEEEcccccEEEEEcccHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHcccEEEEEcHHHHHccc
mdaplaawpwdnlgmfKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINqrgvdfkqidnewnwDNFILLQAAIASMGyyifpcseslprwntkgfIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYhslhhsspvpqiptagHATLLEHIVLSAIVAIpilgssiigYGSISLIYGYILMFDFLRCLghcnveiiphrwfetfpflryllytptyhslhhtekdsnfclfMPLFDALGNTLNSKSWEDHKKItsasgenvrvpDFVFLAHVVDvtasmhppfvfrslaslpyspklfmlpfwpLAFSAMFALWAWSKTFLISFYWLRGrlhqtwavprygfqyflpfaqtGINKQIEDAILRADRLGVKVLSLAALnkneslngggtlfvdkhpnlkvRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLKDSRKFRKKHL
mdaplaawpwdnlGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITsasgenvrvpDFVFLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVIlnelpkdvKEVFLTGatsklgraiALYLCRKrvrvlkdsrkfrkkhl
MDAPLAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPilgssiigygsisliygyilMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLKDSRKFRKKHL
****LAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVL***********
*DAPLAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLKDS********
MDAPLAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLKDSRKFRKKHL
***PLAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLKDSRKF*****
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
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MDAPLAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLKDSRKFRKKHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query487 2.2.26 [Sep-21-2011]
Q8H1Z0 632 Protein ECERIFERUM 3 OS=A yes no 0.977 0.753 0.663 0.0
F4HVY0 625 Protein ECERIFERUM 1 OS=A no no 0.958 0.747 0.362 1e-75
F4HVX7 627 Protein CER1-like 1 OS=Ar no no 0.960 0.746 0.345 1e-70
F4IR05 613 Protein CER1-like 2 OS=Ar no no 0.954 0.758 0.350 6e-70
>sp|Q8H1Z0|CER3_ARATH Protein ECERIFERUM 3 OS=Arabidopsis thaliana GN=CER3 PE=1 SV=1 Back     alignment and function desciption
 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/481 (66%), Positives = 376/481 (78%), Gaps = 5/481 (1%)

Query: 1   MDAPLAAWPWDNLGMFKYVLYGPLVGKALYSWVYE-DKRIEYWCLHILIISVLRGLIHIL 59
           M A L+AWPW+N G  KY+LY PL  + +YSWVYE D     WC+HILII  L+ L+H L
Sbjct: 1   MVAFLSAWPWENFGNLKYLLYAPLAAQVVYSWVYEEDISKVLWCIHILIICGLKALVHEL 60

Query: 60  WNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFP----CSESL 115
           W+ F+NMLF+ R  +IN +G+DFKQID+EW+WDN+I+LQA I S+  Y+ P       SL
Sbjct: 61  WSVFNNMLFVTRTLRINPKGIDFKQIDHEWHWDNYIILQAIIVSLICYMSPPLMMMINSL 120

Query: 116 PRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATL 175
           P WNTKG IAL +LHV  SEPLYY LHR FHRN Y F HYHS HHSSPVP   TAG+ATL
Sbjct: 121 PLWNTKGLIALIVLHVTFSEPLYYFLHRSFHRNNYFFTHYHSFHHSSPVPHPMTAGNATL 180

Query: 176 LEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFL 235
           LE+I+L  +  +P++G  + G GS+S IYGY +MFDF+RCLGHCNVEI  H+ FE  P L
Sbjct: 181 LENIILCVVAGVPLIGCCLFGVGSLSAIYGYAVMFDFMRCLGHCNVEIFSHKLFEILPVL 240

Query: 236 RYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFV 295
           RYL+YTPTYHSLHH E  +NFCLFMPLFD LG+T N  SWE  KKI  ++GE  RVP+FV
Sbjct: 241 RYLIYTPTYHSLHHQEMGTNFCLFMPLFDVLGDTQNPNSWELQKKIRLSAGERKRVPEFV 300

Query: 296 FLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWL 355
           FLAH VDV ++MH PFVFRS AS+PY+ ++F+LP WP  F  M  +WAWSKTFL SFY L
Sbjct: 301 FLAHGVDVMSAMHAPFVFRSFASMPYTTRIFLLPMWPFTFCVMLGMWAWSKTFLFSFYTL 360

Query: 356 RGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGG 415
           R  L QTW VPR+GFQYFLPFA  GIN QIE AILRAD++GVKV+SLAALNKNE+LNGGG
Sbjct: 361 RNNLCQTWGVPRFGFQYFLPFATKGINDQIEAAILRADKIGVKVISLAALNKNEALNGGG 420

Query: 416 TLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRV 475
           TLFV+KHP+L+VRVVHGNT TAAVIL E+PKDV EVFLTGATSKLGRAIALYLCR+ VRV
Sbjct: 421 TLFVNKHPDLRVRVVHGNTLTAAVILYEIPKDVNEVFLTGATSKLGRAIALYLCRRGVRV 480

Query: 476 L 476
           L
Sbjct: 481 L 481
Involved in cuticule membrane and wax production, and in the typhine and sopropollenin biosynthesis of pollen. May act as an aldehyde-generating acyl-CoA reductase.
Arabidopsis thaliana (taxid: 3702)
>sp|F4HVY0|CER1_ARATH Protein ECERIFERUM 1 OS=Arabidopsis thaliana GN=CER1 PE=1 SV=1 Back     alignment and function description
>sp|F4HVX7|CERL1_ARATH Protein CER1-like 1 OS=Arabidopsis thaliana GN=At1g02190 PE=2 SV=1 Back     alignment and function description
>sp|F4IR05|CERL2_ARATH Protein CER1-like 2 OS=Arabidopsis thaliana GN=At2g37700 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query487
225445726 632 PREDICTED: protein WAX2 isoform 2 [Vitis 0.987 0.761 0.715 0.0
225445728 630 PREDICTED: protein WAX2 isoform 1 [Vitis 0.983 0.760 0.711 0.0
356547835 629 PREDICTED: protein WAX2-like [Glycine ma 0.975 0.755 0.703 0.0
356562514 632 PREDICTED: protein WAX2-like [Glycine ma 0.975 0.751 0.695 0.0
297793287 632 hypothetical protein ARALYDRAFT_495876 [ 0.977 0.753 0.667 0.0
312281577 631 unnamed protein product [Thellungiella h 0.977 0.754 0.675 0.0
224143851 652 predicted protein [Populus trichocarpa] 0.991 0.740 0.648 0.0
30696940 632 protein WAX2 [Arabidopsis thaliana] gi|7 0.977 0.753 0.663 0.0
224088374 633 predicted protein [Populus trichocarpa] 0.991 0.763 0.666 0.0
255574595578 sterol desaturase, putative [Ricinus com 0.987 0.832 0.646 0.0
>gi|225445726|ref|XP_002270946.1| PREDICTED: protein WAX2 isoform 2 [Vitis vinifera] gi|297743728|emb|CBI36611.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/485 (71%), Positives = 407/485 (83%), Gaps = 4/485 (0%)

Query: 3   APLAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVLRGLIHILWNS 62
           A L+AWPW+NLG FKY+LYGP +GK LYS  +ED + + WCLHILI+  LRGLIH  W S
Sbjct: 5   AVLSAWPWENLGTFKYLLYGPFIGKLLYSKFHEDAQTDTWCLHILILCALRGLIHQSWCS 64

Query: 63  FSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKG 122
           +SNMLFL R R+I ++GVDFKQID EW+WDNFILLQA IAS+ +YIFP    LP WNT+G
Sbjct: 65  YSNMLFLTRNRRIQKQGVDFKQIDREWDWDNFILLQALIASVAFYIFPFLSDLPVWNTRG 124

Query: 123 FIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLS 182
            IA  ILH+ VSEPLYY +HR FH N YLF  YHSLHH+S V Q  TAG AT LEH++LS
Sbjct: 125 VIAALILHIGVSEPLYYWVHRCFHGN-YLFTRYHSLHHASTVTQSFTAGSATFLEHLILS 183

Query: 183 AIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTP 242
           A+V IP+LGSS++G+GSIS+IYGY+L+FDFLRCLGH NVE++PH  F  FPFL+YL+YTP
Sbjct: 184 AVVGIPVLGSSLMGFGSISMIYGYVLIFDFLRCLGHSNVEVVPHAMFHAFPFLKYLIYTP 243

Query: 243 TYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVD 302
           TYHSLHHTE  +NFCLFMPLFDALGNT+N KSWE HKKITS +G+  RVPDFVFLAHVVD
Sbjct: 244 TYHSLHHTEMGTNFCLFMPLFDALGNTMNCKSWELHKKITSDTGKYGRVPDFVFLAHVVD 303

Query: 303 VTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQT 362
           V +++H PFVFRS  SLP++ ++F+LP WP AF  M  +WAWSKTFL++FY LRGRLHQT
Sbjct: 304 VISALHVPFVFRSFGSLPFATRIFLLPLWPQAFVIMLLMWAWSKTFLVTFYNLRGRLHQT 363

Query: 363 WAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLFVDKH 422
           WAVPR+GFQYFLPFA  GIN QIE AILRADRLGVKV+SLAALNKNE+LNGGGTLFVDKH
Sbjct: 364 WAVPRFGFQYFLPFATEGINNQIEQAILRADRLGVKVISLAALNKNEALNGGGTLFVDKH 423

Query: 423 PNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK---DS 479
           PNLKVRVVHGNT TAAVIL+E+P+ VKEVFLTGATSKLGRAIALYLC+++VRVL     +
Sbjct: 424 PNLKVRVVHGNTLTAAVILHEIPQGVKEVFLTGATSKLGRAIALYLCQRKVRVLMLTLST 483

Query: 480 RKFRK 484
            +F+K
Sbjct: 484 ERFQK 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445728|ref|XP_002270904.1| PREDICTED: protein WAX2 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356547835|ref|XP_003542310.1| PREDICTED: protein WAX2-like [Glycine max] Back     alignment and taxonomy information
>gi|356562514|ref|XP_003549515.1| PREDICTED: protein WAX2-like [Glycine max] Back     alignment and taxonomy information
>gi|297793287|ref|XP_002864528.1| hypothetical protein ARALYDRAFT_495876 [Arabidopsis lyrata subsp. lyrata] gi|297310363|gb|EFH40787.1| hypothetical protein ARALYDRAFT_495876 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|312281577|dbj|BAJ33654.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|224143851|ref|XP_002325096.1| predicted protein [Populus trichocarpa] gi|222866530|gb|EEF03661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30696940|ref|NP_200588.2| protein WAX2 [Arabidopsis thaliana] gi|75151993|sp|Q8H1Z0.1|CER3_ARATH RecName: Full=Protein ECERIFERUM 3; AltName: Full=Protein FACELESS POLLEN 1; AltName: Full=Protein WAX2; AltName: Full=Protein YORE-YORE gi|22900949|gb|AAN06975.1| cuticle protein [Arabidopsis thaliana] gi|37051339|dbj|BAC81644.1| YORE-YORE protein [Arabidopsis thaliana] gi|40714041|dbj|BAD06945.1| faceless pollen-1 [Arabidopsis thaliana] gi|332009570|gb|AED96953.1| protein WAX2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224088374|ref|XP_002308430.1| predicted protein [Populus trichocarpa] gi|222854406|gb|EEE91953.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255574595|ref|XP_002528208.1| sterol desaturase, putative [Ricinus communis] gi|223532369|gb|EEF34165.1| sterol desaturase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query487
TAIR|locus:2174368 632 CER3 "ECERIFERUM 3" [Arabidops 0.977 0.753 0.642 6.2e-172
UNIPROTKB|Q6ETL8 628 P0544B02.10 "Os02g0178800 prot 0.981 0.761 0.550 3.4e-141
UNIPROTKB|Q7XDI3 621 Os10g0471100 "CER1 protein, pu 0.969 0.760 0.347 3e-78
TAIR|locus:2040666 613 AT2G37700 "AT2G37700" [Arabido 0.952 0.756 0.343 1.8e-71
TAIR|locus:2204813 627 AT1G02190 "AT1G02190" [Arabido 0.958 0.744 0.331 6.1e-71
UNIPROTKB|Q109K1 595 LOC_Os10g33250 "CER1 protein, 0.665 0.544 0.329 5.8e-50
TAIR|locus:2174368 CER3 "ECERIFERUM 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1671 (593.3 bits), Expect = 6.2e-172, P = 6.2e-172
 Identities = 309/481 (64%), Positives = 363/481 (75%)

Query:     1 MDAPLAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEY-WCLHILIISVLRGLIHIL 59
             M A L+AWPW+N G  KY+LY PL  + +YSWVYE+   +  WC+HILII  L+ L+H L
Sbjct:     1 MVAFLSAWPWENFGNLKYLLYAPLAAQVVYSWVYEEDISKVLWCIHILIICGLKALVHEL 60

Query:    60 WNSFSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFP----CSESL 115
             W+ F+NMLF+ R  +IN +G+DFKQID+EW+WDN+I+LQA I S+  Y+ P       SL
Sbjct:    61 WSVFNNMLFVTRTLRINPKGIDFKQIDHEWHWDNYIILQAIIVSLICYMSPPLMMMINSL 120

Query:   116 PRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATL 175
             P WNTKG IAL +LHV  SEPLYY LHR FHRN Y F HYHS HHSSPVP   TAG+ATL
Sbjct:   121 PLWNTKGLIALIVLHVTFSEPLYYFLHRSFHRNNYFFTHYHSFHHSSPVPHPMTAGNATL 180

Query:   176 LEHIVLSAIVAIPXXXXXXXXXXXXXXXXXXXXMFDFLRCLGHCNVEIIPHRWFETFPFL 235
             LE+I+L  +  +P                    MFDF+RCLGHCNVEI  H+ FE  P L
Sbjct:   181 LENIILCVVAGVPLIGCCLFGVGSLSAIYGYAVMFDFMRCLGHCNVEIFSHKLFEILPVL 240

Query:   236 RYLLYTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFV 295
             RYL+YTPTYHSLHH E  +NFCLFMPLFD LG+T N  SWE  KKI  ++GE  RVP+FV
Sbjct:   241 RYLIYTPTYHSLHHQEMGTNFCLFMPLFDVLGDTQNPNSWELQKKIRLSAGERKRVPEFV 300

Query:   296 FLAHVVDVTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWL 355
             FLAH VDV ++MH PFVFRS AS+PY+ ++F+LP WP  F  M  +WAWSKTFL SFY L
Sbjct:   301 FLAHGVDVMSAMHAPFVFRSFASMPYTTRIFLLPMWPFTFCVMLGMWAWSKTFLFSFYTL 360

Query:   356 RGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGG 415
             R  L QTW VPR+GFQYFLPFA  GIN QIE AILRAD++GVKV+SLAALNKNE+LNGGG
Sbjct:   361 RNNLCQTWGVPRFGFQYFLPFATKGINDQIEAAILRADKIGVKVISLAALNKNEALNGGG 420

Query:   416 TLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRV 475
             TLFV+KHP+L+VRVVHGNT TAAVIL E+PKDV EVFLTGATSKLGRAIALYLCR+ VRV
Sbjct:   421 TLFVNKHPDLRVRVVHGNTLTAAVILYEIPKDVNEVFLTGATSKLGRAIALYLCRRGVRV 480

Query:   476 L 476
             L
Sbjct:   481 L 481
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=ISS
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0010025 "wax biosynthetic process" evidence=IMP
GO:0016020 "membrane" evidence=ISS
GO:0042335 "cuticle development" evidence=RCA;IMP
GO:0048235 "pollen sperm cell differentiation" evidence=IMP
GO:0005886 "plasma membrane" evidence=IDA
GO:0006723 "cuticle hydrocarbon biosynthetic process" evidence=IMP
GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA
GO:0043447 "alkane biosynthetic process" evidence=IDA
UNIPROTKB|Q6ETL8 P0544B02.10 "Os02g0178800 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XDI3 Os10g0471100 "CER1 protein, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2040666 AT2G37700 "AT2G37700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204813 AT1G02190 "AT1G02190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q109K1 LOC_Os10g33250 "CER1 protein, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H1Z0CER3_ARATHNo assigned EC number0.66320.97740.7531yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query487
PLN02869 620 PLN02869, PLN02869, fatty aldehyde decarbonylase 1e-112
pfam04116114 pfam04116, FA_hydroxylase, Fatty acid hydroxylase 2e-13
COG3000271 COG3000, ERG3, Sterol desaturase [Lipid metabolism 2e-13
pfam12076 164 pfam12076, Wax2_C, WAX2 C-terminal domain 6e-07
>gnl|CDD|166510 PLN02869, PLN02869, fatty aldehyde decarbonylase Back     alignment and domain information 
 Score =  344 bits (883), Expect = e-112
 Identities = 191/491 (38%), Positives = 274/491 (55%), Gaps = 19/491 (3%)

Query: 5   LAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKRIEYWCLHILIISVL--RGLIHILWNS 62
           L  WPW  LG FKYV+  P V  ++YS+V +D++ E    + LI   L  R L + LW S
Sbjct: 8   LTDWPWKPLGSFKYVVLAPWVIHSIYSFVVKDEK-ERDLSYFLIFPFLLWRMLHNQLWIS 66

Query: 63  FSNMLFLNRARQINQRGVDFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKG 122
            S         +I  +G++F+Q+D E NWD+ IL    +  +GY I P +  +P W T G
Sbjct: 67  LSRYRTAKGNNRIVDKGIEFEQVDRERNWDDQILFNGILFYVGYMILPGASHMPLWRTDG 126

Query: 123 FIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHHSSPVPQIPTAGHATLLEHIVLS 182
            +   +LH+   E LYY LHR  H + YL+  YHS HHSS V +  T+      EHI   
Sbjct: 127 VLITILLHMGPVEFLYYWLHRALHHH-YLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYF 185

Query: 183 AIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLLYTP 242
            + AIP+L +   G  SI+  +GYI   DF+  +GHCN E+IP   F  FP L+YL+YTP
Sbjct: 186 LLFAIPLLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTP 245

Query: 243 TYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVD 302
           +YHSLHHT+  +N+ LFMP++D +  T++  S   ++K      E   +PD V L H+  
Sbjct: 246 SYHSLHHTQFRTNYSLFMPIYDYIYGTMDKSSDTLYEKSLKRPEE---IPDVVHLTHLTT 302

Query: 303 VTASMHPPFVFRSLASLPYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLH-- 360
             +  H    F SLAS PY  K ++   WP+   +M   W + +TF++     R R +  
Sbjct: 303 PDSIYHLRLGFASLASKPYISKWYLRLMWPVTSWSMMLTWIYGRTFVLE----RNRFNKL 358

Query: 361 --QTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKVLSLAALNKNESLNGGGTLF 418
             QTW +P+Y  QY L +    IN  IE+AIL AD+ GVKVLSL  LN+ E LN  G L+
Sbjct: 359 NLQTWVIPKYKIQYLLKWQNESINSLIEEAILEADKRGVKVLSLGLLNQGEELNRYGELY 418

Query: 419 VDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRV--- 475
           + ++P LK++VV G++   AV+LN +PK   +V   G  SK+   IA  LC++ ++V   
Sbjct: 419 IHRNPKLKIKVVDGSSLAVAVVLNSIPKGTTQVLFRGNLSKVAYFIASALCQRGIQVATF 478

Query: 476 -LKDSRKFRKK 485
              +  K  KK
Sbjct: 479 REDEYEKLNKK 489

Length = 620
>gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily Back     alignment and domain information
>gnl|CDD|225546 COG3000, ERG3, Sterol desaturase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|192933 pfam12076, Wax2_C, WAX2 C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 487
PLN02869 620 fatty aldehyde decarbonylase 100.0
KOG0873283 consensus C-4 sterol methyl oxidase [Lipid transpo 100.0
COG3000271 ERG3 Sterol desaturase [Lipid metabolism] 99.96
KOG0872312 consensus Sterol C5 desaturase [Lipid transport an 99.87
KOG0874287 consensus Sphingolipid hydroxylase [Lipid transpor 99.85
PF04116114 FA_hydroxylase: Fatty acid hydroxylase superfamily 99.72
PLN02434237 fatty acid hydroxylase 99.09
PRK14982 340 acyl-ACP reductase; Provisional 98.49
KOG0539240 consensus Sphingolipid fatty acid hydroxylase [Lip 97.75
PRK07424406 bifunctional sterol desaturase/short chain dehydro 97.54
PLN02601303 beta-carotene hydroxylase 97.53
COG5322 351 Predicted dehydrogenase [General function predicti 95.5
PRK06196 315 oxidoreductase; Provisional 93.45
KOG1208 314 consensus Dehydrogenases with different specificit 92.84
KOG1014 312 consensus 17 beta-hydroxysteroid dehydrogenase typ 92.7
PLN03209 576 translocon at the inner envelope of chloroplast su 92.26
PF10520178 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme 91.66
PLN02780 320 ketoreductase/ oxidoreductase 91.16
PRK05866 293 short chain dehydrogenase; Provisional 90.18
PLN02695 370 GDP-D-mannose-3',5'-epimerase 89.33
PRK07985 294 oxidoreductase; Provisional 88.82
PRK07424 406 bifunctional sterol desaturase/short chain dehydro 88.7
PLN02657 390 3,8-divinyl protochlorophyllide a 8-vinyl reductas 87.57
PRK06128 300 oxidoreductase; Provisional 87.04
PLN02686 367 cinnamoyl-CoA reductase 85.86
cd01078 194 NAD_bind_H4MPT_DH NADP binding domain of methylene 85.78
PRK09496 453 trkA potassium transporter peripheral membrane com 85.6
PLN02166 436 dTDP-glucose 4,6-dehydratase 85.57
COG1484 254 DnaC DNA replication protein [DNA replication, rec 85.51
PRK05579 399 bifunctional phosphopantothenoylcysteine decarboxy 85.11
PRK06484 520 short chain dehydrogenase; Validated 83.05
PRK12548 289 shikimate 5-dehydrogenase; Provisional 81.96
PRK00258 278 aroE shikimate 5-dehydrogenase; Reviewed 81.8
PLN02572 442 UDP-sulfoquinovose synthase 81.7
PRK07201 657 short chain dehydrogenase; Provisional 81.59
PLN02206 442 UDP-glucuronate decarboxylase 80.57
PF01488135 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; 80.43
>PLN02869 fatty aldehyde decarbonylase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-160  Score=1278.03  Aligned_cols=480  Identities=38%  Similarity=0.694  Sum_probs=460.1

Q ss_pred             CCCCCCCCCccCCCceEEehhHHHHHHHHHhhhcccc-CcchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCCC
Q 011375            2 DAPLAAWPWDNLGMFKYVLYGPLVGKALYSWVYEDKR-IEYWCLHILIISVLRGLIHILWNSFSNMLFLNRARQINQRGV   80 (487)
Q Consensus         2 ~~~l~~wpw~~lg~~ky~l~~P~~~~~~~~~~~~~~~-~~~w~l~il~~~l~r~l~~~~wi~~~r~~~~~~k~KIq~~~~   80 (487)
                      ||+||+|||++||+|||++++|+|++++|++..++.. .|.||+++++++++|++++|+|++++|++.+++++||++|++
T Consensus         5 pg~lt~wpW~~lG~~Ky~~~~p~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~l~~q~W~s~sr~~~~~~~~ri~~~~i   84 (620)
T PLN02869          5 PGILTDWPWKPLGSFKYVVLAPWVIHSIYSFVVKDEKERDLSYFLIFPFLLWRMLHNQLWISLSRYRTAKGNNRIVDKGI   84 (620)
T ss_pred             CcccccCcccccCCeeeeeehHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeeeccCC
Confidence            8999999999999999999999999999998877554 445999999999999999999999999999999999999999


Q ss_pred             ChhhhhHHHhchhhHHHHHHHHHHHhhhccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCcchHhHHhhccCC
Q 011375           81 DFKQIDNEWNWDNFILLQAAIASMGYYIFPCSESLPRWNTKGFIALQILHVAVSEPLYYVLHRHFHRNKYLFIHYHSLHH  160 (487)
Q Consensus        81 ~~~qi~rE~~~~n~ills~li~~~~~~~~p~~~~lP~W~~~gli~~~ll~~l~~Df~~Yw~HRllH~~~~ly~r~Hk~HH  160 (487)
                      +|||+|||++||||+|++++++++++..+|..+.+|.|+++|++..+++|+++.|++|||+||++|++ ++||++|++||
T Consensus        85 ~f~QvDre~~wDd~iil~~l~~~~~~~~~p~~~~~P~W~~~g~l~~~Llhv~~~Df~fYW~HRllH~~-~LYwr~HkvHH  163 (620)
T PLN02869         85 EFEQVDRERNWDDQILFNGILFYVGYMILPGASHMPLWRTDGVLITILLHMGPVEFLYYWLHRALHHH-YLYSRYHSHHH  163 (620)
T ss_pred             CceeeccccccchHHHHHHHHHHHHHHhhhhhhcCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHhhcc
Confidence            99999999999999999999999999889999999999999999999999999999999999999999 99999999999


Q ss_pred             CCCCCCcccccccCh-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcccceeecCCCcccccccccccc
Q 011375          161 SSPVPQIPTAGHATL-LEHIVLSAIVAIPILGSSIIGYGSISLIYGYILMFDFLRCLGHCNVEIIPHRWFETFPFLRYLL  239 (487)
Q Consensus       161 ss~~p~~~ta~~~hp-lE~ll~~~~~~iPll~~~llG~~s~~~i~~y~~~~~~~~~~~Hsn~e~~P~~~~~~~p~l~~li  239 (487)
                      ++++|+|+|+.. || .|.+.+.+++.+|+++..++|..++.++++|+++.++.++++|||+|++|+++++.+|+++|++
T Consensus       164 ss~~~~P~Ts~~-HP~~E~L~y~ll~~IPLllli~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll  242 (620)
T PLN02869        164 SSIVTEPITSVI-HPFAEHIAYFLLFAIPLLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLM  242 (620)
T ss_pred             CCCCCCchhhhc-CcHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcccccCccccccchhccCCcchhee
Confidence            999999999974 65 5778777777889987767777788899999999999999999999999999988889999999


Q ss_pred             CCchhhhhhhcCCCCCcccCchhHHhhcCCCCCCCcchhhhhhccCCCCcCCCCEEEeeeccccccccCcccchhhcccC
Q 011375          240 YTPTYHSLHHTEKDSNFCLFMPLFDALGNTLNSKSWEDHKKITSASGENVRVPDFVFLAHVVDVTASMHPPFVFRSLASL  319 (487)
Q Consensus       240 ~tp~~H~lHH~~~~~NYG~~~~lWDrLfGT~~~~~~~~~~~~~~~~~~~~~~pd~VfLah~~~~~s~~h~~~~~~~~~~~  319 (487)
                      +||++|++||+++++|||.+|++||++|||+++++++.+++...  +.|+ +||+|||||+||++|+||+||||||+||+
T Consensus       243 ~TPsfHdlHHs~fd~NYGlfF~~WDrLFGT~d~~s~~l~e~~~~--~~~~-~pd~V~l~H~t~~~s~~h~~~~~~s~as~  319 (620)
T PLN02869        243 YTPSYHSLHHTQFRTNYSLFMPIYDYIYGTMDKSSDTLYEKSLK--RPEE-IPDVVHLTHLTTPDSIYHLRLGFASLASK  319 (620)
T ss_pred             cCchHHhHHhccCCcCcccchHHHHhccCCCCCCchhHHHHhhc--Cccc-CCCEEEEeccCCHHHhhccchHHHHhccC
Confidence            99999999999999999999999999999999999999999887  5444 99999999999999999999999999999


Q ss_pred             CCCCccccccchhHHHHHHHHHHHhccceEEeeeecCCcceeeEEeeccCccccccchhhhhHHHHHHHHHHHhhcCCeE
Q 011375          320 PYSPKLFMLPFWPLAFSAMFALWAWSKTFLISFYWLRGRLHQTWAVPRYGFQYFLPFAQTGINKQIEDAILRADRLGVKV  399 (487)
Q Consensus       320 p~~~~~~~~~~~p~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~pr~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv  399 (487)
                      ||+++||||||||+|+++|+++|+|||||++|+|+|||+++|||+||||||||++|+++|+||++|||||+||||+||||
T Consensus       320 p~~~~~~l~~~wp~~~~~m~~~w~~~~~f~~~~~~~~~~~~~tw~vpr~~~qy~~~~~~~~in~~Ie~ail~ad~~Gvkv  399 (620)
T PLN02869        320 PYISKWYLRLMWPVTSWSMMLTWIYGRTFVLERNRFNKLNLQTWVIPKYKIQYLLKWQNESINSLIEEAILEADKRGVKV  399 (620)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHhCCceEeeeeeccceeeeEEEeccccccccCchhhhhHHHHHHHHHHHHHhcCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccCceeeeecCCCCceEEecCCchhhHHhhhcCCCccceEEEeCCcchHHHHHHHHhhccCcEEEe-c
Q 011375          400 LSLAALNKNESLNGGGTLFVDKHPNLKVRVVHGNTCTAAVILNELPKDVKEVFLTGATSKLGRAIALYLCRKRVRVLK-D  478 (487)
Q Consensus       400 ~sl~~ln~~~~ln~~g~l~~~~~p~l~~rvv~g~~l~~a~v~~~ip~~~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~-~  478 (487)
                      +|||+|||||+|||||||||+|||+|||||||||||||||||||||+|||||||||+|||||||||+|||||||||++ |
T Consensus       400 ~sLg~LNk~~~LN~~G~l~v~k~p~L~vrvv~G~tLtaAvvln~ip~~~~~vfl~G~~sK~~raia~~lc~r~i~~~t~~  479 (620)
T PLN02869        400 LSLGLLNQGEELNRYGELYIHRNPKLKIKVVDGSSLAVAVVLNSIPKGTTQVLFRGNLSKVAYFIASALCQRGIQVATFR  479 (620)
T ss_pred             EechhcchhhhhcCCceEeeecCCCcceEEEeCCchHHHHHHHhcCCCCceEEEecCccHHHHHHHHHHHhcCCeEeecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999766 9


Q ss_pred             hhhhhhcc
Q 011375          479 SRKFRKKH  486 (487)
Q Consensus       479 ~~~~~~~~  486 (487)
                      +|||+|.+
T Consensus       480 ~~~~~~~~  487 (620)
T PLN02869        480 EDEYEKLN  487 (620)
T ss_pred             HHHHHHHH
Confidence            99999764

>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism] Back     alignment and domain information
>COG3000 ERG3 Sterol desaturase [Lipid metabolism] Back     alignment and domain information
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism] Back     alignment and domain information
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases Back     alignment and domain information
>PLN02434 fatty acid hydroxylase Back     alignment and domain information
>PRK14982 acyl-ACP reductase; Provisional Back     alignment and domain information
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism] Back     alignment and domain information
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated Back     alignment and domain information
>PLN02601 beta-carotene hydroxylase Back     alignment and domain information
>COG5322 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>PRK06196 oxidoreductase; Provisional Back     alignment and domain information
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] Back     alignment and domain information
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional Back     alignment and domain information
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1 Back     alignment and domain information
>PLN02780 ketoreductase/ oxidoreductase Back     alignment and domain information
>PRK05866 short chain dehydrogenase; Provisional Back     alignment and domain information
>PLN02695 GDP-D-mannose-3',5'-epimerase Back     alignment and domain information
>PRK07985 oxidoreductase; Provisional Back     alignment and domain information
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated Back     alignment and domain information
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase Back     alignment and domain information
>PRK06128 oxidoreductase; Provisional Back     alignment and domain information
>PLN02686 cinnamoyl-CoA reductase Back     alignment and domain information
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase Back     alignment and domain information
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed Back     alignment and domain information
>PLN02166 dTDP-glucose 4,6-dehydratase Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>PRK06484 short chain dehydrogenase; Validated Back     alignment and domain information
>PRK12548 shikimate 5-dehydrogenase; Provisional Back     alignment and domain information
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed Back     alignment and domain information
>PLN02572 UDP-sulfoquinovose synthase Back     alignment and domain information
>PRK07201 short chain dehydrogenase; Provisional Back     alignment and domain information
>PLN02206 UDP-glucuronate decarboxylase Back     alignment and domain information
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query487
3qvo_A 236 NMRA family protein; structural genomics, PSI-biol 94.76
3e8x_A 236 Putative NAD-dependent epimerase/dehydratase; stru 94.53
3ppi_A 281 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de 93.03
3rkr_A 262 Short chain oxidoreductase; rossmann fold; HET: NA 92.98
3orf_A 251 Dihydropteridine reductase; alpha-beta-alpha sandw 92.71
3ctm_A 279 Carbonyl reductase; alcohol dehydrogenase, short-c 92.58
1vl8_A 267 Gluconate 5-dehydrogenase; TM0441, structural geno 92.56
3o38_A 266 Short chain dehydrogenase; tuberculosis, ortholog 92.55
1xu9_A 286 Corticosteroid 11-beta-dehydrogenase, isozyme 1; h 92.43
3sju_A 279 Keto reductase; short-chain dehydrogenase, oxidore 92.34
2b4q_A 276 Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier 92.33
2rhc_B 277 Actinorhodin polyketide ketoreductase; oxidoreduct 92.28
1xg5_A 279 ARPG836; short chain dehydrogenase, human, SGC, st 92.27
4dyv_A 272 Short-chain dehydrogenase/reductase SDR; structura 92.24
2nwq_A 272 Probable short-chain dehydrogenase; oxidoreductase 92.21
1ae1_A 273 Tropinone reductase-I; oxidoreductase, tropane alk 92.19
2c07_A 285 3-oxoacyl-(acyl-carrier protein) reductase; oxidor 92.13
3tjr_A 301 Short chain dehydrogenase; structural genomics, se 92.13
1yb1_A 272 17-beta-hydroxysteroid dehydrogenase type XI; shor 92.1
4dry_A 281 3-oxoacyl-[acyl-carrier-protein] reductase; struct 92.1
3r1i_A 276 Short-chain type dehydrogenase/reductase; structur 92.01
2nm0_A 253 Probable 3-oxacyl-(acyl-carrier-protein) reductas; 91.98
3grp_A 266 3-oxoacyl-(acyl carrierprotein) reductase; structu 91.95
3ftp_A 270 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid 91.9
3gvc_A 277 Oxidoreductase, probable short-chain type dehydrog 91.88
4iin_A 271 3-ketoacyl-acyl carrier protein reductase (FABG); 91.82
4ibo_A 271 Gluconate dehydrogenase; enzyme function initiativ 91.64
3rih_A 293 Short chain dehydrogenase or reductase; structural 91.6
4e3z_A 272 Putative oxidoreductase protein; PSI-biology, stru 91.59
1w6u_A 302 2,4-dienoyl-COA reductase, mitochondrial precursor 91.56
4imr_A 275 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor 91.47
4dqx_A 277 Probable oxidoreductase protein; structural genomi 91.4
3gem_A 260 Short chain dehydrogenase; structural genomics, AP 91.35
3ruf_A 351 WBGU; rossmann fold, UDP-hexose 4-epimerase, isome 91.31
3cxt_A 291 Dehydrogenase with different specificities; rossma 91.28
4fc7_A 277 Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman 91.19
3gk3_A 269 Acetoacetyl-COA reductase; acetoacetyl-CO reductas 91.17
3v8b_A 283 Putative dehydrogenase, possibly 3-oxoacyl-[acyl- 91.15
4iiu_A 267 3-oxoacyl-[acyl-carrier protein] reductase; struct 91.13
1xhl_A 297 Short-chain dehydrogenase/reductase family member 90.97
1ja9_A 274 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p 90.96
3uf0_A 273 Short-chain dehydrogenase/reductase SDR; gluconate 90.85
4dmm_A 269 3-oxoacyl-[acyl-carrier-protein] reductase; rossma 90.71
3un1_A 260 Probable oxidoreductase; structural genomics, PSI- 90.7
4fgs_A 273 Probable dehydrogenase protein; PSI-biology, nysgr 90.67
3ijr_A 291 Oxidoreductase, short chain dehydrogenase/reducta; 90.5
3ic5_A118 Putative saccharopine dehydrogenase; structural ge 90.4
3uxy_A 266 Short-chain dehydrogenase/reductase SDR; structura 90.38
2q1w_A 333 Putative nucleotide sugar epimerase/ dehydratase; 90.18
2x9g_A 288 PTR1, pteridine reductase; short chain dehydrogena 90.15
3v2g_A 271 3-oxoacyl-[acyl-carrier-protein] reductase; struct 90.14
3kvo_A 346 Hydroxysteroid dehydrogenase-like protein 2; HSDL2 90.11
3v2h_A 281 D-beta-hydroxybutyrate dehydrogenase; structural g 90.07
1sny_A 267 Sniffer CG10964-PA; alpha and beta protein, rossma 89.84
2b69_A 343 UDP-glucuronate decarboxylase 1; UDP-glucoronic ac 89.73
4egb_A 346 DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce 89.62
3u5t_A 267 3-oxoacyl-[acyl-carrier-protein] reductase; struct 89.53
4da9_A 280 Short-chain dehydrogenase/reductase; structural ge 89.5
1n7h_A 381 GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, 89.48
1g0o_A 283 Trihydroxynaphthalene reductase; protein-NADPH-act 89.44
3slg_A 372 PBGP3 protein; structural genomics, seattle struct 89.38
1sb8_A 352 WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN 89.31
2qhx_A 328 Pteridine reductase 1; oxidoreductase, short-chain 89.21
2c5a_A 379 GDP-mannose-3', 5'-epimerase; short chain dehydrat 89.08
1lu9_A 287 Methylene tetrahydromethanopterin dehydrogenase; a 89.05
1t2a_A 375 GDP-mannose 4,6 dehydratase; structural genomics c 89.03
3r3s_A 294 Oxidoreductase; structural genomics, csgid, center 88.88
2p91_A 285 Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD 88.86
3nzo_A 399 UDP-N-acetylglucosamine 4,6-dehydratase; structura 88.63
2gn4_A 344 FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann 88.44
3t7c_A 299 Carveol dehydrogenase; structural genomics, seattl 88.37
3k31_A 296 Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI 88.29
3grk_A 293 Enoyl-(acyl-carrier-protein) reductase (NADH); ssg 88.07
3oec_A 317 Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; 87.93
2q1s_A 377 Putative nucleotide sugar epimerase/ dehydratase; 87.5
4f6c_A 427 AUSA reductase domain protein; thioester reductase 87.44
2x6t_A 357 ADP-L-glycero-D-manno-heptose-6-epimerase; isomera 87.18
3rku_A 287 Oxidoreductase YMR226C; substrate fingerprint, sho 86.98
3qlj_A 322 Short chain dehydrogenase; structural genomics, se 86.88
3nrc_A 280 Enoyl-[acyl-carrier-protein] reductase (NADH); ros 86.79
3oh8_A 516 Nucleoside-diphosphate sugar epimerase (SULA FAMI; 86.51
2g1u_A155 Hypothetical protein TM1088A; structural genomics, 85.15
3s8m_A 422 Enoyl-ACP reductase; rossmann fold, oxidoreductase 84.09
4dqv_A 478 Probable peptide synthetase NRP (peptide synthase; 83.82
3zu3_A 405 Putative reductase YPO4104/Y4119/YP_4011; oxidored 83.76
4f6l_B 508 AUSA reductase domain protein; thioester reductase 82.68
3u0b_A 454 Oxidoreductase, short chain dehydrogenase/reducta 82.22
4eue_A 418 Putative reductase CA_C0462; TER, biofuel, synthet 80.81
1nvt_A 287 Shikimate 5'-dehydrogenase; structural genomics, P 80.4
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Back     alignment and structure
Probab=94.76  E-value=0.023  Score=53.23  Aligned_cols=31  Identities=23%  Similarity=0.403  Sum_probs=28.6

Q ss_pred             ccceEEEeCCcchHHHHHHHHhhccC-cEEEe
Q 011375          447 DVKEVFLTGATSKLGRAIALYLCRKR-VRVLK  477 (487)
Q Consensus       447 ~~~~v~l~g~~~k~~~a~a~~lc~~~-~~v~~  477 (487)
                      ..|.|++||++|.+|++||..|.++| .+|..
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~   53 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTL   53 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEE
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEE
Confidence            45789999999999999999999999 88887
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Back     alignment and structure
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Back     alignment and structure
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Back     alignment and structure
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Back     alignment and structure
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Back     alignment and structure
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Back     alignment and structure
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Back     alignment and structure
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Back     alignment and structure
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Back     alignment and structure
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Back     alignment and structure
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Back     alignment and structure
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Back     alignment and structure
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Back     alignment and structure
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Back     alignment and structure
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Back     alignment and structure
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Back     alignment and structure
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Back     alignment and structure
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Back     alignment and structure
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Back     alignment and structure
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Back     alignment and structure
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Back     alignment and structure
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Back     alignment and structure
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Back     alignment and structure
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A Back     alignment and structure
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} Back     alignment and structure
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Back     alignment and structure
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Back     alignment and structure
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Back     alignment and structure
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} Back     alignment and structure
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Back     alignment and structure
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Back     alignment and structure
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Back     alignment and structure
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Back     alignment and structure
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Back     alignment and structure
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* Back     alignment and structure
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Back     alignment and structure
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Back     alignment and structure
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 Back     alignment and structure
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Back     alignment and structure
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Back     alignment and structure
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Back     alignment and structure
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Back     alignment and structure
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Back     alignment and structure
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Back     alignment and structure
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Back     alignment and structure
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Back     alignment and structure
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Back     alignment and structure
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Back     alignment and structure
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Back     alignment and structure
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Back     alignment and structure
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Back     alignment and structure
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Back     alignment and structure
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Back     alignment and structure
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Back     alignment and structure
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Back     alignment and structure
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Back     alignment and structure
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Back     alignment and structure
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Back     alignment and structure
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Back     alignment and structure
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Back     alignment and structure
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Back     alignment and structure
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Back     alignment and structure
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} Back     alignment and structure
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Back     alignment and structure
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Back     alignment and structure
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* Back     alignment and structure
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* Back     alignment and structure
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Back     alignment and structure
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Back     alignment and structure
>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} Back     alignment and structure
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Back     alignment and structure
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Back     alignment and structure
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* Back     alignment and structure
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Back     alignment and structure
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Back     alignment and structure
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} Back     alignment and structure
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* Back     alignment and structure
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} Back     alignment and structure
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A Back     alignment and structure
>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* Back     alignment and structure
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query487
d1luaa1 191 Methylene-tetrahydromethanopterin dehydrogenase {M 93.04
d1w6ua_ 294 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H 92.69
d2jfga193 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 82.14
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.04  E-value=0.039  Score=48.59  Aligned_cols=35  Identities=20%  Similarity=0.163  Sum_probs=30.8

Q ss_pred             cceEEEeCCcchHHHHHHHHhhccCcEEEe---chhhh
Q 011375          448 VKEVFLTGATSKLGRAIALYLCRKRVRVLK---DSRKF  482 (487)
Q Consensus       448 ~~~v~l~g~~~k~~~a~a~~lc~~~~~v~~---~~~~~  482 (487)
                      =|.|++||++|=+|+++|..|.++|.+|.+   +.|+-
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~   60 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA   60 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHH
Confidence            368999999999999999999999999999   44443
>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Back     information, alignment and structure
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure