Citrus Sinensis ID: 011442
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S746 | 594 | Protein HOTHEAD OS=Arabid | yes | no | 0.993 | 0.811 | 0.729 | 0.0 | |
| Q9SSM2 | 552 | (R)-mandelonitrile lyase- | no | no | 0.913 | 0.802 | 0.435 | 1e-107 | |
| P52707 | 573 | (R)-mandelonitrile lyase | N/A | no | 0.880 | 0.745 | 0.376 | 6e-92 | |
| Q945K2 | 563 | (R)-mandelonitrile lyase | N/A | no | 0.878 | 0.756 | 0.394 | 4e-91 | |
| P52706 | 563 | (R)-mandelonitrile lyase | N/A | no | 0.878 | 0.756 | 0.391 | 7e-91 | |
| O82784 | 574 | (R)-mandelonitrile lyase | N/A | no | 0.876 | 0.740 | 0.385 | 8e-91 | |
| O50048 | 576 | (R)-mandelonitrile lyase | N/A | no | 0.890 | 0.75 | 0.385 | 1e-90 | |
| O24243 | 559 | (R)-mandelonitrile lyase | N/A | no | 0.876 | 0.760 | 0.381 | 7e-88 | |
| Q7X2H8 | 546 | Choline oxidase OS=Arthro | N/A | no | 0.851 | 0.756 | 0.233 | 6e-20 | |
| B9JBA2 | 549 | Choline dehydrogenase OS= | no | no | 0.868 | 0.766 | 0.245 | 1e-18 |
| >sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/484 (72%), Positives = 406/484 (83%), Gaps = 2/484 (0%)
Query: 3 LADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNESF 62
LAD S SASQ F+STDGV NARARVLGGGS INAGFY+RA + F++R GWD KLV ES+
Sbjct: 112 LADISASSASQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESY 171
Query: 63 PWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAA 122
PWVER+IVHQPK WQKALRDSLL+VGV PFNGFTYDH+ GTKIGGTIFDRFGRRHTAA
Sbjct: 172 PWVEREIVHQPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAA 231
Query: 123 ELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVIL 182
ELLA ANPQK+ VLI ATVQKIVFDTSG RP+ GVIFKDE GNQHQA L+ SEVIL
Sbjct: 232 ELLAYANPQKLRVLIYATVQKIVFDTSGTRPRVTGVIFKDEKGNQHQALLSNRKGSEVIL 291
Query: 183 SCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSL 242
S GAIG+PQML LSG+GPK EL++L I VVL+N H+GKGMADNPMN + VPS P+EQSL
Sbjct: 292 SSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSL 351
Query: 243 IETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYI-RN 301
I+TVGITK+GVY+EAS+GFG+S +SIH H+GIMS + STIP KQR PEA Q YI RN
Sbjct: 352 IQTVGITKMGVYVEASTGFGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRN 411
Query: 302 KRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRM 361
K L HEAF G FILEK+A PIS G LSL+NTNVDDNPSV+FNYF HP+DL+RCV+ +R+
Sbjct: 412 KYQL-HEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRL 470
Query: 362 AAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHY 421
+K+V S FLNYTQCD+++V +L+ SV+AN+NL PK NDTKS+ QFCKDTV+TIWHY
Sbjct: 471 VSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHY 530
Query: 422 HGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481
HGGC VGKVVS KVLG+DRLRV+DGST+DESPGTNPQ T++MMGRYMGVKILR+RLG
Sbjct: 531 HGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590
Query: 482 AAGV 485
AGV
Sbjct: 591 KAGV 594
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Probable FAD-dependent enzyme. Involved in regulating post-genital organ fusion. Required to limit cellular interactions between contacting epidermal cells during floral development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1 | Back alignment and function description |
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| >sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1 | Back alignment and function description |
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| >sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1 | Back alignment and function description |
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| >sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1 | Back alignment and function description |
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| >sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7X2H8|CHOX_ARTGO Choline oxidase OS=Arthrobacter globiformis GN=codA PE=1 SV=1 | Back alignment and function description |
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| >sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=betA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | ||||||
| 255572947 | 597 | glucose-methanol-choline (gmc) oxidoredu | 0.997 | 0.810 | 0.793 | 0.0 | |
| 224128496 | 591 | predicted protein [Populus trichocarpa] | 1.0 | 0.820 | 0.787 | 0.0 | |
| 224134567 | 554 | predicted protein [Populus trichocarpa] | 0.997 | 0.873 | 0.777 | 0.0 | |
| 449458173 | 595 | PREDICTED: protein HOTHEAD-like [Cucumis | 1.0 | 0.815 | 0.771 | 0.0 | |
| 356550436 | 585 | PREDICTED: protein HOTHEAD-like [Glycine | 1.0 | 0.829 | 0.760 | 0.0 | |
| 297743084 | 593 | unnamed protein product [Vitis vinifera] | 1.0 | 0.817 | 0.760 | 0.0 | |
| 225442275 | 584 | PREDICTED: protein HOTHEAD-like [Vitis v | 1.0 | 0.830 | 0.760 | 0.0 | |
| 356526015 | 591 | PREDICTED: protein HOTHEAD-like [Glycine | 1.0 | 0.820 | 0.764 | 0.0 | |
| 356556753 | 585 | PREDICTED: protein HOTHEAD-like [Glycine | 1.0 | 0.829 | 0.756 | 0.0 | |
| 356522196 | 591 | PREDICTED: protein HOTHEAD-like [Glycine | 1.0 | 0.820 | 0.758 | 0.0 |
| >gi|255572947|ref|XP_002527404.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] gi|223533214|gb|EEF34970.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/484 (79%), Positives = 440/484 (90%)
Query: 1 MTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNE 60
+TLADTS SASQYFISTDGVLNARARVLGGG+SINAGFYTRAS++FI+++GWD KLVNE
Sbjct: 113 ITLADTSATSASQYFISTDGVLNARARVLGGGTSINAGFYTRASTRFIKKVGWDEKLVNE 172
Query: 61 SFPWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHT 120
S+PWVE+QIVH+PK WQ RDSLLDVGVSP+NGFTYDHIYGTK GGTIFD+FGRRHT
Sbjct: 173 SYPWVEKQIVHKPKVAPWQVTFRDSLLDVGVSPYNGFTYDHIYGTKFGGTIFDQFGRRHT 232
Query: 121 AAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEV 180
AAELLAS NP+ +TVL+ ATVQ+++FDTS K PKAVGV+FKDENGNQHQAFLA NP+SE+
Sbjct: 233 AAELLASGNPRLLTVLVHATVQRVLFDTSRKHPKAVGVVFKDENGNQHQAFLANNPRSEI 292
Query: 181 ILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQ 240
ILS GAIGTPQML LSG+GPK EL+K+ I VVLDN +GKGMADNPMN +FVPS +PV Q
Sbjct: 293 ILSSGAIGTPQMLLLSGIGPKDELKKMGIPVVLDNEFVGKGMADNPMNTIFVPSKKPVRQ 352
Query: 241 SLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIR 300
SLI+TVGITK GVYIE+SSGFG+S+DSIHCHHG+MSAEIGQLSTIPPK+RT EAIQ YI+
Sbjct: 353 SLIQTVGITKFGVYIESSSGFGQSKDSIHCHHGMMSAEIGQLSTIPPKKRTLEAIQAYIK 412
Query: 301 NKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVR 360
K+ LPHEAFKGGFILEK+ASPISTG+LSLINTNVDDNPSV+FNYF HP DL+ CV+GVR
Sbjct: 413 RKKDLPHEAFKGGFILEKLASPISTGQLSLINTNVDDNPSVTFNYFKHPEDLRSCVNGVR 472
Query: 361 MAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWH 420
MA KIVQS+HF N+TQCD++++E ILN SV ANVNL+PKH NDTKS+EQFC+DTVI+IWH
Sbjct: 473 MATKIVQSEHFTNFTQCDKQTMEKILNISVVANVNLIPKHPNDTKSIEQFCQDTVISIWH 532
Query: 421 YHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLG 480
YHGGCHVGKVVS ++KVLG+DRLR+VDGST+DESPGTNPQ TVLMMGRYMG+KILR RLG
Sbjct: 533 YHGGCHVGKVVSPDHKVLGVDRLRIVDGSTFDESPGTNPQATVLMMGRYMGLKILRDRLG 592
Query: 481 KAAG 484
K AG
Sbjct: 593 KEAG 596
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128496|ref|XP_002329018.1| predicted protein [Populus trichocarpa] gi|222839689|gb|EEE78012.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224134567|ref|XP_002327436.1| predicted protein [Populus trichocarpa] gi|222835990|gb|EEE74411.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449458173|ref|XP_004146822.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus] gi|449515708|ref|XP_004164890.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356550436|ref|XP_003543593.1| PREDICTED: protein HOTHEAD-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297743084|emb|CBI35951.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225442275|ref|XP_002275841.1| PREDICTED: protein HOTHEAD-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356526015|ref|XP_003531615.1| PREDICTED: protein HOTHEAD-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356556753|ref|XP_003546687.1| PREDICTED: protein HOTHEAD-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356522196|ref|XP_003529733.1| PREDICTED: protein HOTHEAD-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | ||||||
| TAIR|locus:2032627 | 594 | HTH "HOTHEAD" [Arabidopsis tha | 0.993 | 0.811 | 0.729 | 8.3e-193 | |
| TAIR|locus:2034705 | 572 | AT1G12570 [Arabidopsis thalian | 0.969 | 0.821 | 0.539 | 1e-130 | |
| TAIR|locus:2173068 | 586 | AT5G51950 [Arabidopsis thalian | 0.977 | 0.808 | 0.524 | 3.6e-128 | |
| TAIR|locus:2078441 | 577 | AT3G56060 [Arabidopsis thalian | 0.971 | 0.816 | 0.504 | 1e-123 | |
| TAIR|locus:2173053 | 582 | AT5G51930 [Arabidopsis thalian | 0.948 | 0.790 | 0.490 | 2.4e-115 | |
| TAIR|locus:2032642 | 552 | AT1G73050 [Arabidopsis thalian | 0.527 | 0.463 | 0.490 | 1.4e-101 | |
| TAIR|locus:2035830 | 501 | AT1G14190 [Arabidopsis thalian | 0.486 | 0.471 | 0.429 | 2.3e-88 | |
| UNIPROTKB|Q945K2 | 563 | MDL2 "(R)-mandelonitrile lyase | 0.476 | 0.410 | 0.453 | 2.7e-86 | |
| TAIR|locus:505006121 | 503 | AT1G14185 [Arabidopsis thalian | 0.597 | 0.576 | 0.387 | 3.6e-78 | |
| UNIPROTKB|G4NA69 | 609 | MGG_15347 "Choline dehydrogena | 0.731 | 0.582 | 0.263 | 1.9e-19 |
| TAIR|locus:2032627 HTH "HOTHEAD" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1868 (662.6 bits), Expect = 8.3e-193, P = 8.3e-193
Identities = 353/484 (72%), Positives = 406/484 (83%)
Query: 3 LADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNESF 62
LAD S SASQ F+STDGV NARARVLGGGS INAGFY+RA + F++R GWD KLV ES+
Sbjct: 112 LADISASSASQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESY 171
Query: 63 PWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAA 122
PWVER+IVHQPK WQKALRDSLL+VGV PFNGFTYDH+ GTKIGGTIFDRFGRRHTAA
Sbjct: 172 PWVEREIVHQPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAA 231
Query: 123 ELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVIL 182
ELLA ANPQK+ VLI ATVQKIVFDTSG RP+ GVIFKDE GNQHQA L+ SEVIL
Sbjct: 232 ELLAYANPQKLRVLIYATVQKIVFDTSGTRPRVTGVIFKDEKGNQHQALLSNRKGSEVIL 291
Query: 183 SCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSL 242
S GAIG+PQML LSG+GPK EL++L I VVL+N H+GKGMADNPMN + VPS P+EQSL
Sbjct: 292 SSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSL 351
Query: 243 IETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYI-RN 301
I+TVGITK+GVY+EAS+GFG+S +SIH H+GIMS + STIP KQR PEA Q YI RN
Sbjct: 352 IQTVGITKMGVYVEASTGFGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRN 411
Query: 302 KRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRM 361
K L HEAF G FILEK+A PIS G LSL+NTNVDDNPSV+FNYF HP+DL+RCV+ +R+
Sbjct: 412 KYQL-HEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRL 470
Query: 362 AAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHY 421
+K+V S FLNYTQCD+++V +L+ SV+AN+NL PK NDTKS+ QFCKDTV+TIWHY
Sbjct: 471 VSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHY 530
Query: 422 HGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481
HGGC VGKVVS KVLG+DRLRV+DGST+DESPGTNPQ T++MMGRYMGVKILR+RLG
Sbjct: 531 HGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590
Query: 482 AAGV 485
AGV
Sbjct: 591 KAGV 594
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| TAIR|locus:2034705 AT1G12570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2173068 AT5G51950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2078441 AT3G56060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2173053 AT5G51930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2032642 AT1G73050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2035830 AT1G14190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q945K2 MDL2 "(R)-mandelonitrile lyase 2" [Prunus dulcis (taxid:3755)] | Back alignment and assigned GO terms |
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| TAIR|locus:505006121 AT1G14185 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G4NA69 MGG_15347 "Choline dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9S746 | HTH_ARATH | No assigned EC number | 0.7293 | 0.9938 | 0.8114 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_970020 | aldehyde-lyase/mandelonitrile lyase (592 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 485 | |||
| PLN02785 | 587 | PLN02785, PLN02785, Protein HOTHEAD | 0.0 | |
| COG2303 | 542 | COG2303, BetA, Choline dehydrogenase and related f | 3e-31 | |
| pfam05199 | 139 | pfam05199, GMC_oxred_C, GMC oxidoreductase | 7e-24 | |
| TIGR01810 | 532 | TIGR01810, betA, choline dehydrogenase | 4e-23 | |
| PRK02106 | 560 | PRK02106, PRK02106, choline dehydrogenase; Validat | 4e-17 | |
| pfam00732 | 218 | pfam00732, GMC_oxred_N, GMC oxidoreductase | 5e-17 | |
| TIGR03970 | 487 | TIGR03970, Rv0697, dehydrogenase, Rv0697 family | 1e-14 | |
| PRK02106 | 560 | PRK02106, PRK02106, choline dehydrogenase; Validat | 1e-08 |
| >gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD | Back alignment and domain information |
|---|
Score = 972 bits (2515), Expect = 0.0
Identities = 385/485 (79%), Positives = 433/485 (89%)
Query: 1 MTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNE 60
+ LADTSP SASQ FISTDGV+NARARVLGGG+ INAGFY+RAS++FI++ GWDAKLVNE
Sbjct: 103 IGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNE 162
Query: 61 SFPWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHT 120
S+PWVERQIVH PK WQ ALRDSLL+VGVSPFNGFTYDH+YGTK+GGTIFD FGRRHT
Sbjct: 163 SYPWVERQIVHWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHT 222
Query: 121 AAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEV 180
AAELLA+ NP K+ VL+ ATVQKIVFDTSGKRP+A GVIFKDENGNQHQAFL+ N SE+
Sbjct: 223 AAELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEI 282
Query: 181 ILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQ 240
ILS GAIG+PQML LSG+GPK EL+K I VVL N H+GKGMADNPMN++FVPS PVEQ
Sbjct: 283 ILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQ 342
Query: 241 SLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIR 300
SLI+TVGITK+GVYIEASSGFG+S DSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQ YI
Sbjct: 343 SLIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIH 402
Query: 301 NKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVR 360
K+ LPHEAF GGFILEKIA PISTG LSLINTNVDDNPSV+FNYF HP DL+RCV G+R
Sbjct: 403 RKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIR 462
Query: 361 MAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWH 420
KIV++ HF N+TQCD++++E +LN SV+AN+NL+PKHTNDTKSLEQFCKDTVITIWH
Sbjct: 463 TIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIWH 522
Query: 421 YHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLG 480
YHGGCHVGKVV YKVLG+ RLRV+DGST+DESPGTNPQ TV+MMGRYMGVKILR+RLG
Sbjct: 523 YHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLG 582
Query: 481 KAAGV 485
+AAGV
Sbjct: 583 RAAGV 587
|
Length = 587 |
| >gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase | Back alignment and domain information |
|---|
| >gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase | Back alignment and domain information |
|---|
| >gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family | Back alignment and domain information |
|---|
| >gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| PLN02785 | 587 | Protein HOTHEAD | 100.0 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 100.0 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 100.0 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 100.0 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 100.0 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 100.0 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 100.0 | |
| PF05199 | 144 | GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078 | 100.0 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.15 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 95.79 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 95.78 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 95.54 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 95.42 | |
| PRK07121 | 492 | hypothetical protein; Validated | 95.03 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 94.77 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 94.65 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 94.64 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 94.42 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 94.06 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 94.03 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 93.91 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 93.81 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.35 | |
| PRK05675 | 570 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.19 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 92.91 | |
| TIGR01816 | 565 | sdhA_forward succinate dehydrogenase, flavoprotein | 92.86 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 92.86 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 92.69 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 92.51 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 92.18 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 92.18 | |
| PLN02815 | 594 | L-aspartate oxidase | 92.1 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 92.09 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 92.06 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 91.83 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 91.81 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 91.69 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 91.36 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 91.33 | |
| TIGR03377 | 516 | glycerol3P_GlpA glycerol-3-phosphate dehydrogenase | 91.06 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 90.98 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 90.95 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 90.48 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 90.15 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 89.8 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 89.8 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 89.7 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 89.53 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 89.49 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 89.39 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 89.2 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 89.17 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 88.84 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 88.54 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 88.49 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 88.42 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 88.41 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 88.08 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 87.04 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 86.63 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 86.43 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 85.88 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 85.8 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 85.66 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 84.21 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 83.65 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 83.23 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 83.16 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 82.52 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 81.56 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 81.5 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 81.09 |
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-88 Score=711.16 Aligned_cols=484 Identities=80% Similarity=1.279 Sum_probs=362.3
Q ss_pred CCCCCCCCCcccccccCCceeecCcccccchhhhcccccccCChhhhhcCCCChhhhccccccchhccccCCCchhhHHH
Q 011442 2 TLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQEGWQKA 81 (485)
Q Consensus 2 ~~~~~~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~~~gW~~~~l~~~~~~~e~~~~~~~~~~~~~~~ 81 (485)
++.+.++.+.||.+.+++++.++|||+|||||+||+|+|.|+++++|+..||+|+++++||+++|+.+...|...++...
T Consensus 104 ~~~d~~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 183 (587)
T PLN02785 104 GLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAA 183 (587)
T ss_pred cccccCCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHH
Confidence 34577888999999999999999999999999999999999999998888999999999999999876555667789999
Q ss_pred HHHHHHhCCCCCCCCCccCCCCceeeeeeEEcCCCccccHHHhhhhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEE
Q 011442 82 LRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFK 161 (485)
Q Consensus 82 ~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~R~sa~~~l~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~ 161 (485)
|.+++.++|++++|++..++..|...|.+++++.|.|++++.+++.++++||+|+++++|+||+|+++++..+|+||+|.
T Consensus 184 ~~~a~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~ 263 (587)
T PLN02785 184 LRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFK 263 (587)
T ss_pred HHHHHHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEE
Confidence 99999999998888776776666666767766789999999877777889999999999999999864333589999998
Q ss_pred eCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCccccccCccCCCceeeecCCCcccch
Q 011442 162 DENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQS 241 (485)
Q Consensus 162 ~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp~VG~nl~dH~~~~~~~~~~~~~~~~ 241 (485)
+.+|+.+++....+++||||||||+|+||+|||+|||||+++|+++||++++|+|+||+||||||...+.+..+.+....
T Consensus 264 ~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~ 343 (587)
T PLN02785 264 DENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQS 343 (587)
T ss_pred ECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhh
Confidence 76676665432223569999999999999999999999999999999999999999999999999988877765543211
Q ss_pred hHHhhcchhhhhHHHhcCCCCCCCCCccccccccccccccccCCCCCCCChHHHHHHhhhccCCCccccccceeeecccc
Q 011442 242 LIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIAS 321 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (485)
..+..+....+.|.....++......+......+....+.+...++....++.+..++.....++...+..+.++..+++
T Consensus 344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 423 (587)
T PLN02785 344 LIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAG 423 (587)
T ss_pred hHhhhhhhccccceecccccccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEEecC
Confidence 11111111111221111121111000000000111111111112222222222222221111111111222344566789
Q ss_pred cCceeEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhccccCCCCCCC
Q 011442 322 PISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHT 401 (485)
Q Consensus 322 P~srG~V~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 401 (485)
|.|||+|+|+|+||.+.|.|+++|+.+|.|++.++++++.+++++++.+++.+......+..++.+..+..|.+..|...
T Consensus 424 P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 503 (587)
T PLN02785 424 PISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHT 503 (587)
T ss_pred CCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999888776421000001111111111222334445
Q ss_pred CCHHHHHHHHHhhcccccccccccccCcccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 011442 402 NDTKSLEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481 (485)
Q Consensus 402 ~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~~~ 481 (485)
.+|++|++|+|+...+.||++|||+||+|||+++||||++|||||||||||.+|++||++|+||||||+|++|+++++++
T Consensus 504 ~~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~ 583 (587)
T PLN02785 504 NDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGR 583 (587)
T ss_pred CCHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 011442 482 AAGV 485 (485)
Q Consensus 482 ~~~~ 485 (485)
+++|
T Consensus 584 ~~~~ 587 (587)
T PLN02785 584 AAGV 587 (587)
T ss_pred hcCC
Confidence 8876
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
| >PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
| >TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E | Back alignment and domain information |
|---|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
| >TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit | Back alignment and domain information |
|---|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 485 | ||||
| 3gdn_A | 521 | Almond Hydroxynitrile Lyase In Complex With Benzald | 1e-91 | ||
| 1ju2_A | 536 | Crystal Structure Of The Hydroxynitrile Lyase From | 1e-91 | ||
| 3red_A | 521 | 3.0 A Structure Of The Prunus Mume Hydroxynitrile L | 1e-91 | ||
| 3nne_A | 546 | Crystal Structure Of Choline Oxidase S101a Mutant L | 2e-21 | ||
| 2jbv_A | 546 | Crystal Structure Of Choline Oxidase Reveals Insigh | 4e-21 | ||
| 3ljp_A | 546 | Crystal Structure Of Choline Oxidase V464a Mutant L | 1e-20 | ||
| 3fim_B | 566 | Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu | 1e-18 | ||
| 3q9t_A | 577 | Crystal Structure Analysis Of Formate Oxidase Lengt | 8e-15 | ||
| 1cf3_A | 583 | Glucose Oxidase From Apergillus Niger Length = 583 | 2e-09 | ||
| 3t37_A | 526 | Crystal Structure Of Pyridoxine 4-Oxidase From Meso | 8e-09 | ||
| 1gpe_A | 587 | Glucose Oxidase From Penicillium Amagasakiense Leng | 4e-07 |
| >pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521 | Back alignment and structure |
|
| >pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536 | Back alignment and structure |
| >pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521 | Back alignment and structure |
| >pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546 | Back alignment and structure |
| >pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546 | Back alignment and structure |
| >pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546 | Back alignment and structure |
| >pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566 | Back alignment and structure |
| >pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577 | Back alignment and structure |
| >pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583 | Back alignment and structure |
| >pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526 | Back alignment and structure |
| >pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536 | Back alignment and structure |
|---|
Score = 457 bits (1179), Expect = e-158
Identities = 173/486 (35%), Positives = 257/486 (52%), Gaps = 41/486 (8%)
Query: 1 MTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIER--MGWDAKLV 58
+ ++ + F+S DG+ N R RVLGG S INAG Y RA++ + WD LV
Sbjct: 75 NLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLV 134
Query: 59 NESFPWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRR 118
N+++ WVE IV++P + WQ + + L+ GV P +GF+ DH GT+I G+ FD G R
Sbjct: 135 NQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTR 194
Query: 119 HTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKS 178
H A ELL N + V + A+V+KI+F A GVI++D NG HQAF+ K
Sbjct: 195 HAADELLNKGNSNNLRVGVHASVEKIIFSN-APGLTATGVIYRDSNGTPHQAFV--RSKG 251
Query: 179 EVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPV 238
EVI+S G IGTPQ+L LSGVGP++ L LNI VVL + ++G+ + DNP N + + P+
Sbjct: 252 EVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPI 311
Query: 239 EQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDY 298
E +++ +GI+ D C + P
Sbjct: 312 EPTIVTVLGIS---------------NDFYQCSFSSLPFTTPPFGFFPSSSY-------- 348
Query: 299 IRNKRTLPHEAFKGGFILEKIASPISTGELSLIN-TNVDDNPSVSFNYFSHPLDLKRCVD 357
P K+A P+S G L+L + +NV +P+V FNY+S+ DL CV
Sbjct: 349 -------PLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVS 401
Query: 358 GVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVIT 417
G++ +++ + Y + +PK D + E FC+++V +
Sbjct: 402 GMKKIGELLSTDALKPYKVE-----DLPGVEGFNILGIPLPKDQTDDAAFETFCRESVAS 456
Query: 418 IWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQ 477
WHYHGGC VGKV+ +++V GI+ LRVVDGST+ +P ++PQG LM+GRY+G+KIL++
Sbjct: 457 YWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQE 516
Query: 478 RLGKAA 483
R
Sbjct: 517 RSASDL 522
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583 | Back alignment and structure |
|---|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587 | Back alignment and structure |
|---|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577 | Back alignment and structure |
|---|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526 | Back alignment and structure |
|---|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566 | Back alignment and structure |
|---|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546 | Back alignment and structure |
|---|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546 | Back alignment and structure |
|---|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623 | Back alignment and structure |
|---|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 | Back alignment and structure |
|---|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 | Back alignment and structure |
|---|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 100.0 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 100.0 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 100.0 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 100.0 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 100.0 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 100.0 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 100.0 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 100.0 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 100.0 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 100.0 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 100.0 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 96.04 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 94.24 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 93.77 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 93.51 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 93.48 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 93.19 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 92.48 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 92.45 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 91.46 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 91.31 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 90.83 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 90.33 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 89.7 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 87.73 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 87.26 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 86.47 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 86.22 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 85.85 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 85.59 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 85.5 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 85.31 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 84.82 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 84.64 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 84.12 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 83.51 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 83.46 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 81.48 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 80.91 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 80.17 |
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-83 Score=677.65 Aligned_cols=448 Identities=20% Similarity=0.301 Sum_probs=330.5
Q ss_pred CCCCCCcccccccCCceeecCcccccchhhhcccccccCChhh---h----hcCCCChhhhccccccchhcccc------
Q 011442 5 DTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQF---I----ERMGWDAKLVNESFPWVERQIVH------ 71 (485)
Q Consensus 5 ~~~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~---~----~~~gW~~~~l~~~~~~~e~~~~~------ 71 (485)
+....|+||+.++++.+.|+|||+|||||+||+|+|+|+++++ | ++.||+|++++|||+|+|+....
T Consensus 60 ~w~~~t~pq~~~~~r~~~~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~ 139 (566)
T 3fim_B 60 DWNYTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNT 139 (566)
T ss_dssp BCCCBCCCCGGGTTCCCBCCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCC
T ss_pred ccccccccCCCCCCceEeccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccc
Confidence 4567899999999999999999999999999999999999854 3 35789999999999999986421
Q ss_pred --------C-----------CCchhhHHHHHHHHHhC--CCCCCCCCccCCCCceeeeeeEE---cCCCccccHHH-hhh
Q 011442 72 --------Q-----------PKQEGWQKALRDSLLDV--GVSPFNGFTYDHIYGTKIGGTIF---DRFGRRHTAAE-LLA 126 (485)
Q Consensus 72 --------~-----------~~~~~~~~~~~~~~~~~--G~~~~~~~~~~~~~g~~~g~~~~---~~~g~R~sa~~-~l~ 126 (485)
+ +...+....|.++++++ |++ ++ .|.+.+...|+... +.+|+|++++. ||.
T Consensus 140 ~~~~~~~~hG~~Gp~~v~~~~~~~~~~~~~~~a~~~~~~G~~-~~---~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayL~ 215 (566)
T 3fim_B 140 SGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFF-FN---PDMGTGHPLGISWSIASVGNGQRSSSSTAYLR 215 (566)
T ss_dssp TTTSCGGGSCBSSSEEEBSCSSCCTHHHHHHHHHHHTHHHHC-BC---SCGGGSCCCEEEECCBSEETTEECCHHHHTHH
T ss_pred cccCCccccCCCCCeeeecCCCCCHHHHHHHHHHHHHhcCCC-cc---CCCCCCCcceEEeeeeecCCCEEcCHHHHHhh
Confidence 0 12356778899999999 985 22 23333443443221 24799999987 875
Q ss_pred h-cCCCCeEEEccceEEEEEeecC-CCCCeEEEEEEEeCCC-CeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHH
Q 011442 127 S-ANPQKITVLIRATVQKIVFDTS-GKRPKAVGVIFKDENG-NQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAE 203 (485)
Q Consensus 127 ~-~~~~nl~v~~~~~V~rI~~~~~-~~~~~a~GV~~~~~~g-~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~ 203 (485)
. ..++||+|+++++|+||+|+.+ ++.++|+||+|.+.+| +.++++| +||||||||+|+||||||+|||||+++
T Consensus 216 p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A----~kEVILsAGai~SPqlL~lSGIGp~~~ 291 (566)
T 3fim_B 216 PAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCA----KKEVVLSAGSVGTPILLQLSGIGDEND 291 (566)
T ss_dssp HHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEE----EEEEEECCHHHHHHHHHHHTTEECHHH
T ss_pred hhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEe----eeEEEEecCCcCChHHHHhcCCCChHH
Confidence 4 4789999999999999999821 1114899999986556 7777874 699999999999999999999999999
Q ss_pred hhhcCCceeecCccccccCccCCCceeeecCCCcccch-h-HH-hhcchhhhhHHHhcCCCCCCCCCcccccccccccc-
Q 011442 204 LEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQS-L-IE-TVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEI- 279 (485)
Q Consensus 204 L~~~GI~~v~dlp~VG~nl~dH~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~- 279 (485)
|+++||++++|||+||+|||||+.+.+.+..+.+.... . .. .........|...+.|+...... ....++....
T Consensus 292 L~~~gI~vv~dlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~--~~~~f~~~~~~ 369 (566)
T 3fim_B 292 LSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIA--NHLAWLRLPSN 369 (566)
T ss_dssp HHHTTCCCSEECTTTTCSBBCCEEECCEEEESCSCSSGGGGTCHHHHHHHHHHHHHHSCSGGGCCSC--SEEEEECCCTT
T ss_pred HhhcCCCceecCcchhhhhhcCccceEEEEeCCCcccchhhcChHHHHHHHHHHHhcCCCCcccChh--hheeeeccccc
Confidence 99999999999999999999999877666554432211 0 00 00112334676667774322110 0011111000
Q ss_pred ----ccccCCCCCCCChHHHHHHhhhccC---C-CccccccceeeecccccCceeEEEecCCCCCCCCeeecCCCCCHhH
Q 011442 280 ----GQLSTIPPKQRTPEAIQDYIRNKRT---L-PHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLD 351 (485)
Q Consensus 280 ----~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P~i~~~y~~~~~D 351 (485)
............+++ +.++..... . ....-...++...+++|+|||+|+|+|+||++.|+|+++|+++|.|
T Consensus 370 ~~~~~~~~~~~~~~~~pd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D 448 (566)
T 3fim_B 370 SSIFQTFPDPAAGPNSAHW-ETIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFD 448 (566)
T ss_dssp CGGGGTSCCCSSSTTSCSE-EEEEESSCCCTTSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSHHH
T ss_pred hhhhhhhccccccCCCCCE-EEEecccchhhcccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCccH
Confidence 000000000111111 001100000 0 0000011235567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccC---
Q 011442 352 LKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG--- 428 (485)
Q Consensus 352 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG--- 428 (485)
++.++++++.+++++++++++.+.. .+ ..|+. ....+|++|++|+|+...+.||++||||||
T Consensus 449 ~~~~~~~~~~~~~i~~~~~~~~~~~------~~------~~P~~---~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~ 513 (566)
T 3fim_B 449 IFTMIQAVKSNLRFLSGQAWADFVI------RP------FDPRL---RDPTDDAAIESYIRDNANTIFHPVGTASMSPRG 513 (566)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTEE------EE------SSGGG---SCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTT
T ss_pred HHHHHHHHHHHHHHHhCcccCCccc------cc------cCCCc---ccccchHHHHHHHhhcccccccccCccccCCcc
Confidence 9999999999999999998887752 11 01220 235689999999999999999999999998
Q ss_pred ---cccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011442 429 ---KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478 (485)
Q Consensus 429 ---~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~ 478 (485)
+|||++|||||++|||||||||||+++++||++|+||||||+||.|++++
T Consensus 514 ~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~~ 566 (566)
T 3fim_B 514 ASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKADQ 566 (566)
T ss_dssp CSSCSBCTTCBBTTCBSEEECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHTC
T ss_pred cCCccCCCCCeEccCCCcEEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhcC
Confidence 79999999999999999999999999999999999999999999998764
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 485 | ||||
| d1ju2a2 | 170 | d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond | 4e-37 | |
| d1ju2a1 | 351 | c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase { | 8e-31 | |
| d1ju2a1 | 351 | c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase { | 6e-10 | |
| d1cf3a1 | 385 | c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper | 2e-19 | |
| d1cf3a1 | 385 | c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper | 2e-04 | |
| d1gpea1 | 391 | c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic | 2e-14 | |
| d1gpea1 | 391 | c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic | 2e-04 | |
| d1kdga1 | 360 | c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain | 3e-12 | |
| d1kdga1 | 360 | c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain | 0.001 | |
| d2f5va1 | 379 | c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W | 5e-11 | |
| d2f5va1 | 379 | c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W | 6e-04 | |
| d3coxa1 | 370 | c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of | 8e-11 | |
| d1n4wa1 | 367 | c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of | 5e-10 | |
| d1cf3a2 | 196 | d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus | 4e-06 | |
| d1gpea2 | 196 | d.16.1.1 (A:329-524) Glucose oxidase {Penicillium | 2e-04 | |
| d1kdga2 | 181 | d.16.1.1 (A:513-693) Flavoprotein domain of flavoc | 7e-04 |
| >d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FAD-linked reductases, C-terminal domain superfamily: FAD-linked reductases, C-terminal domain family: GMC oxidoreductases domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Score = 132 bits (332), Expect = 4e-37
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 36/204 (17%)
Query: 222 MADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQ 281
+ DNP N + + P+E +++ +GI+ D C +
Sbjct: 2 LHDNPRNFINILPPNPIEPTIVTVLGISN---------------DFYQCSFSSL------ 40
Query: 282 LSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSL-INTNVDDNPS 340
T + + LP+ F K+A P+S G L+L ++NV +P+
Sbjct: 41 -------PFTTPPFGFFPSSSYPLPNSTF--AHFASKVAGPLSYGSLTLKSSSNVRVSPN 91
Query: 341 VSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKH 400
V FNY+S+ DL CV G++ +++ + Y + +PK
Sbjct: 92 VKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVE-----DLPGVEGFNILGIPLPKD 146
Query: 401 TNDTKSLEQFCKDTVITIWHYHGG 424
D + E FC+++V + WHYHGG
Sbjct: 147 QTDDAAFETFCRESVASYWHYHGG 170
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 | Back information, alignment and structure |
|---|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 | Back information, alignment and structure |
|---|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 | Back information, alignment and structure |
|---|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 | Back information, alignment and structure |
|---|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 | Back information, alignment and structure |
|---|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 | Back information, alignment and structure |
|---|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 | Back information, alignment and structure |
|---|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 | Back information, alignment and structure |
|---|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 | Back information, alignment and structure |
|---|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 | Back information, alignment and structure |
|---|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370 | Back information, alignment and structure |
|---|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367 | Back information, alignment and structure |
|---|
| >d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196 | Back information, alignment and structure |
|---|
| >d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196 | Back information, alignment and structure |
|---|
| >d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 100.0 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 100.0 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 100.0 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 100.0 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 99.97 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 99.96 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 99.95 | |
| d1ju2a2 | 170 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 99.7 | |
| d1kdga2 | 181 | Flavoprotein domain of flavocytochrome cellobiose | 99.66 | |
| d1cf3a2 | 196 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 99.64 | |
| d1gpea2 | 196 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 99.63 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 97.29 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 96.87 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 96.7 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 95.36 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.8 | |
| d2f5va2 | 198 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 93.92 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.83 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 91.95 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 91.4 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 90.79 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 89.73 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 89.14 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 86.67 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 84.51 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 83.35 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 80.05 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 80.03 |
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=100.00 E-value=1.5e-49 Score=401.26 Aligned_cols=209 Identities=26% Similarity=0.343 Sum_probs=166.0
Q ss_pred CCCCcccccccCCceeecCcccccchhhhcccccccCChhhhh-------cCCCChhhhccccccchhcccc--------
Q 011442 7 SPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIVH-------- 71 (485)
Q Consensus 7 ~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~-------~~gW~~~~l~~~~~~~e~~~~~-------- 71 (485)
+..|+|| ++++.+.++|||+|||||+||+|+|+|+++.+|+ ..+|+|++++|||+|+|.....
T Consensus 84 ~~~t~p~--~~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~ 161 (391)
T d1gpea1 84 NYLTVPL--INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAG 161 (391)
T ss_dssp CEECCCC--TTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHT
T ss_pred Cceeeec--CCCcEeeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccc
Confidence 4456676 7899999999999999999999999999986543 3689999999999999975321
Q ss_pred ---------------------CCCchhhHHHHHHHHHhCCCCCCCCCccCCCCceeee----eeEEcCCCccccHHH-hh
Q 011442 72 ---------------------QPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIG----GTIFDRFGRRHTAAE-LL 125 (485)
Q Consensus 72 ---------------------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~g----~~~~~~~g~R~sa~~-~l 125 (485)
.....+..+.|.++++++|++..+ +.+.+...+ +...+.++.|++++. ++
T Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~----~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~ 237 (391)
T d1gpea1 162 HSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQ----DFLCGHPRGVSMIMNNLDENQVRVDAARAWL 237 (391)
T ss_dssp CCCCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSC----CTTSSCCCEEECCEESBCTTCCBCCHHHHHT
T ss_pred cCccccccCCCCcccccccccccccCHHHHHHHHHHHhcCCceee----ccccCcccccccccceeeccccccchhhhcc
Confidence 012346678899999999986322 222222222 122234566776665 54
Q ss_pred -hhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHh
Q 011442 126 -ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAEL 204 (485)
Q Consensus 126 -~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L 204 (485)
+.+.++||+|+++++|+||+|+......||+||+|.+.+|..++++| +||||||||||+||+|||+|||||+++|
T Consensus 238 ~p~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A----~keVILaAGai~SP~LLl~SGIGp~~~L 313 (391)
T d1gpea1 238 LPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFA----KHEVLLAAGSAISPLILEYSGIGLKSVL 313 (391)
T ss_dssp TTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEE----EEEEEECSCTTTHHHHHHHTTEECHHHH
T ss_pred CccccchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEe----CCEEEEecchhcchHHHHhcCCCcHHHH
Confidence 45678999999999999999986543469999999876777777875 6999999999999999999999999999
Q ss_pred hhcCCceeecCc-cccccCccC
Q 011442 205 EKLNISVVLDNA-HIGKGMADN 225 (485)
Q Consensus 205 ~~~GI~~v~dlp-~VG~nl~dH 225 (485)
+++||++++||| |||+|||||
T Consensus 314 ~~~gI~~v~dlP~Gvg~nl~dh 335 (391)
T d1gpea1 314 DQANVTQLLDLPVGICSMMSRE 335 (391)
T ss_dssp HHTTCCCSEECCTTCTCBSCGG
T ss_pred HHCCCCEEEECCcccccccccC
Confidence 999999999999 799999998
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
| >d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
| >d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
| >d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
| >d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
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| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
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| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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